Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0362220 | XP_003600264.2 | 93.600 | 250 | 14 | 1 | 1 | 250 | 1 | 248 | 5.97e-171 | 495 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0362220 | sp|Q9SJ41|C3H18_ARATH | 33.977 | 259 | 146 | 10 | 1 | 247 | 1 | 246 | 1.21e-32 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0362220 | G7J214 | 93.600 | 250 | 14 | 1 | 1 | 250 | 1 | 248 | 2.85e-171 | 495 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0362220 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0362220 | MtrunA17_Chr3g0101151 | 93.600 | 250 | 14 | 1 | 1 | 250 | 1 | 248 | 5.49e-175 | 495 |
| Msa0362220 | MtrunA17_Chr5g0445571 | 50.730 | 274 | 108 | 8 | 1 | 250 | 1 | 271 | 2.84e-75 | 241 |
| Msa0362220 | MtrunA17_Chr4g0020571 | 28.774 | 212 | 119 | 5 | 1 | 184 | 1 | 208 | 3.29e-13 | 70.5 |
| Msa0362220 | MtrunA17_Chr3g0090551 | 32.609 | 138 | 86 | 1 | 1 | 131 | 1 | 138 | 1.39e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0362220 | AT3G52980.1 | 32.727 | 275 | 116 | 9 | 1 | 247 | 1 | 234 | 9.46e-35 | 130 |
| Msa0362220 | AT2G05160.3 | 33.977 | 259 | 146 | 10 | 1 | 247 | 1 | 246 | 7.20e-34 | 130 |
| Msa0362220 | AT2G05160.2 | 33.977 | 259 | 146 | 10 | 1 | 247 | 1 | 246 | 1.23e-33 | 130 |
| Msa0362220 | AT2G05160.1 | 33.977 | 259 | 146 | 10 | 1 | 247 | 1 | 246 | 1.23e-33 | 130 |
| Msa0362220 | AT3G51950.1 | 33.161 | 193 | 99 | 6 | 1 | 184 | 1 | 172 | 2.50e-20 | 92.0 |
| Msa0362220 | AT3G51950.3 | 33.161 | 193 | 99 | 6 | 1 | 184 | 1 | 172 | 2.50e-20 | 92.0 |
| Msa0362220 | AT3G51950.2 | 33.161 | 193 | 99 | 6 | 1 | 184 | 1 | 172 | 2.50e-20 | 92.0 |
| Msa0362220 | AT3G51950.4 | 33.161 | 193 | 99 | 6 | 1 | 184 | 1 | 172 | 2.50e-20 | 92.0 |
| Msa0362220 | AT3G63450.3 | 52.381 | 63 | 30 | 0 | 1 | 63 | 1 | 63 | 4.08e-13 | 70.1 |
| Msa0362220 | AT3G63450.4 | 52.381 | 63 | 30 | 0 | 1 | 63 | 1 | 63 | 4.08e-13 | 70.1 |
| Msa0362220 | AT3G63450.5 | 52.381 | 63 | 30 | 0 | 1 | 63 | 1 | 63 | 4.08e-13 | 70.1 |
| Msa0362220 | AT3G63450.2 | 52.381 | 63 | 30 | 0 | 1 | 63 | 1 | 63 | 4.13e-13 | 70.1 |
| Msa0362220 | AT3G63450.1 | 52.381 | 63 | 30 | 0 | 1 | 63 | 1 | 63 | 4.13e-13 | 70.1 |
| Msa0362220 | AT3G63450.7 | 52.381 | 63 | 30 | 0 | 1 | 63 | 1 | 63 | 4.19e-13 | 69.7 |
| Msa0362220 | AT3G21100.4 | 33.803 | 142 | 76 | 3 | 1 | 124 | 1 | 142 | 1.80e-11 | 65.5 |
| Msa0362220 | AT3G21100.3 | 33.803 | 142 | 76 | 3 | 1 | 124 | 1 | 142 | 1.80e-11 | 65.5 |
| Msa0362220 | AT3G21100.2 | 33.803 | 142 | 76 | 3 | 1 | 124 | 1 | 142 | 1.95e-11 | 65.5 |
| Msa0362220 | AT3G21100.1 | 33.803 | 142 | 76 | 3 | 1 | 124 | 1 | 142 | 1.95e-11 | 65.5 |
Find 55 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTTCTACGTCTTATTTAT+AGG | 0.197027 | 3_1:-53084505 | Msa0362220:CDS |
| GCGACATGAATCTCAGTTTA+TGG | 0.216308 | 3_1:-53084579 | Msa0362220:CDS |
| TGCTAAATTAGCTTCGTTTC+CGG | 0.258908 | 3_1:-53085460 | Msa0362220:CDS |
| ATGATCTTTGTAGCATGTTC+TGG | 0.302836 | 3_1:+53085522 | None:intergenic |
| TCTGCCTTTCCCATGAATTT+CGG | 0.323570 | 3_1:+53084627 | None:intergenic |
| GTGCCTATTGTCATAAATTC+TGG | 0.329465 | 3_1:+53085291 | None:intergenic |
| ACCATGATGCAGATTGTAAT+AGG | 0.338016 | 3_1:+53085323 | None:intergenic |
| ACTTGCCGAAGAAGAATTTC+CGG | 0.355656 | 3_1:+53085362 | None:intergenic |
| GATCCGTGAAGTTGCCCTTA+AGG | 0.356297 | 3_1:-53085430 | Msa0362220:CDS |
| GGAAGTGAAGCAATTGATAT+AGG | 0.377638 | 3_1:+53084886 | None:intergenic |
| ATATTATCATAAGTATAAAA+AGG | 0.383017 | 3_1:-53084857 | Msa0362220:intron |
| GACATAGTCTCTCATATGTA+TGG | 0.411648 | 3_1:-53085006 | Msa0362220:CDS |
| ATTTCAGCAAAGGATATTGC+AGG | 0.419277 | 3_1:-53085074 | Msa0362220:CDS |
| CAAACCCGTTCTGCATTGTT+CGG | 0.429946 | 3_1:-53085258 | Msa0362220:CDS |
| GACGAACAAGCGATGTCGCC+TGG | 0.435445 | 3_1:-53084964 | Msa0362220:CDS |
| TACGTCTTATTTATAGGAGT+CGG | 0.436904 | 3_1:-53084499 | Msa0362220:CDS |
| ACGTCTTATTTATAGGAGTC+GGG | 0.437880 | 3_1:-53084498 | Msa0362220:CDS |
| CCGTTCTGCATTGTTCGGTT+CGG | 0.440992 | 3_1:-53085253 | Msa0362220:CDS |
| TCTAGTTGCGCCAGTGATCC+AGG | 0.441853 | 3_1:+53084946 | None:intergenic |
| CTGATGAAGGAAAAGATCAT+TGG | 0.442608 | 3_1:-53084454 | Msa0362220:CDS |
| AGTCCAGAATTTATGACAAT+AGG | 0.443283 | 3_1:-53085294 | Msa0362220:CDS |
| AGCGATGTCGCCTGGATCAC+TGG | 0.443823 | 3_1:-53084956 | Msa0362220:CDS |
| GCAGGCATGGAAATAGTTGT+AGG | 0.444946 | 3_1:-53085056 | Msa0362220:CDS |
| CCATGATGCAGATTGTAATA+GGG | 0.449338 | 3_1:+53085324 | None:intergenic |
| GAACATGCTACAAAGATCAT+TGG | 0.453611 | 3_1:-53085519 | Msa0362220:CDS |
| GGAAGATGCGCCGAAATTCA+TGG | 0.459292 | 3_1:-53084637 | Msa0362220:CDS |
| GTGCCCTCTGTTGAAATTGT+CGG | 0.461289 | 3_1:-53084419 | Msa0362220:CDS |
| CGAACCGAACAATGCAGAAC+GGG | 0.462640 | 3_1:+53085254 | None:intergenic |
| CTCGTCCGGAAATTCTTCTT+CGG | 0.465272 | 3_1:-53085367 | Msa0362220:CDS |
| TGGCCTTAAGGGCAACTTCA+CGG | 0.473570 | 3_1:+53085427 | None:intergenic |
| CAAAACTGAGCTTCAAAAGA+TGG | 0.480853 | 3_1:-53085406 | Msa0362220:CDS |
| CAGCTCATGATGTTGCCAAC+TGG | 0.486377 | 3_1:-53084547 | Msa0362220:CDS |
| ATCAATTGCTTCACTTCCAA+TGG | 0.488882 | 3_1:-53084881 | Msa0362220:CDS |
| GCTCGCCGCTATCTTGCATA+AGG | 0.491407 | 3_1:+53085490 | None:intergenic |
| TCAGCCGTAGCCAATTTGAA+TGG | 0.493639 | 3_1:-53085153 | Msa0362220:CDS |
| TACTTATGATAATATGCCAT+TGG | 0.499102 | 3_1:+53084865 | None:intergenic |
| AAGAGCATTGCTCCTGATGA+AGG | 0.502297 | 3_1:-53084467 | Msa0362220:CDS |
| AGCAAAGGATATTGCAGGCA+TGG | 0.511519 | 3_1:-53085069 | Msa0362220:CDS |
| CCCTATTACAATCTGCATCA+TGG | 0.512386 | 3_1:-53085324 | Msa0362220:CDS |
| CAGTTGGCAACATCATGAGC+TGG | 0.520489 | 3_1:+53084548 | None:intergenic |
| ACTTCACGGATCAAATTATC+CGG | 0.521367 | 3_1:+53085441 | None:intergenic |
| AGTTGTAGGTTCTATCATCA+TGG | 0.533176 | 3_1:-53085042 | Msa0362220:CDS |
| TGGATATTTCTGAATGTACA+AGG | 0.547604 | 3_1:-53085575 | Msa0362220:CDS |
| GCAATCATAGTTATCAGTAG+TGG | 0.553497 | 3_1:+53085200 | None:intergenic |
| ACGAGATCGATAATCTCGTC+CGG | 0.562404 | 3_1:-53085381 | Msa0362220:CDS |
| TATCCGACAATTTCAACAGA+GGG | 0.572959 | 3_1:+53084416 | None:intergenic |
| GAAGATGCGCCGAAATTCAT+GGG | 0.574373 | 3_1:-53084636 | Msa0362220:CDS |
| CTTAAGTGTTGAATACCAGT+TGG | 0.575343 | 3_1:+53084532 | None:intergenic |
| TGCGCCGAAATTCATGGGAA+AGG | 0.582391 | 3_1:-53084631 | Msa0362220:CDS |
| ACATGTCACTATTTCAGCAA+AGG | 0.593665 | 3_1:-53085084 | Msa0362220:CDS |
| AGTTGGCAACATCATGAGCT+GGG | 0.603196 | 3_1:+53084549 | None:intergenic |
| CCGAACCGAACAATGCAGAA+CGG | 0.655557 | 3_1:+53085253 | None:intergenic |
| TTATCCGACAATTTCAACAG+AGG | 0.674007 | 3_1:+53084415 | None:intergenic |
| AGAACGGGTTTGATGTTCAG+TGG | 0.674415 | 3_1:+53085269 | None:intergenic |
| TATCTCCTTATGCAAGATAG+CGG | 0.677531 | 3_1:-53085495 | Msa0362220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATCATAAGTATAAAA+AGG | - | chr3_1:53085134-53085153 | Msa0362220:CDS | 10.0% |
| !! | ATATTATCATAAGTATAAAA+AGG | - | chr3_1:53085134-53085153 | Msa0362220:CDS | 10.0% |
| !!! | TTGTTACTTTAATCTAGTTT+TGG | - | chr3_1:53085330-53085349 | Msa0362220:CDS | 20.0% |
| !!! | TTGTTACTTTAATCTAGTTT+TGG | - | chr3_1:53085330-53085349 | Msa0362220:CDS | 20.0% |
| !!! | AAATAGTGACATGTTTTGAA+TGG | + | chr3_1:53084901-53084920 | None:intergenic | 25.0% |
| ! | TACTTATGATAATATGCCAT+TGG | + | chr3_1:53085129-53085148 | None:intergenic | 25.0% |
| !!! | TTACTTTAATCTAGTTTTGG+CGG | - | chr3_1:53085333-53085352 | Msa0362220:CDS | 25.0% |
| !!! | AAGTTCTACGTCTTATTTAT+AGG | - | chr3_1:53085486-53085505 | Msa0362220:CDS | 25.0% |
| !!! | AAATAGTGACATGTTTTGAA+TGG | + | chr3_1:53084901-53084920 | None:intergenic | 25.0% |
| ! | TACTTATGATAATATGCCAT+TGG | + | chr3_1:53085129-53085148 | None:intergenic | 25.0% |
| !!! | TTACTTTAATCTAGTTTTGG+CGG | - | chr3_1:53085333-53085352 | Msa0362220:CDS | 25.0% |
| !!! | AAGTTCTACGTCTTATTTAT+AGG | - | chr3_1:53085486-53085505 | Msa0362220:CDS | 25.0% |
| ! | TGGATATTTCTGAATGTACA+AGG | - | chr3_1:53084416-53084435 | Msa0362220:CDS | 30.0% |
| AGTCCAGAATTTATGACAAT+AGG | - | chr3_1:53084697-53084716 | Msa0362220:intron | 30.0% | |
| ! | TTTTCCATTCAAATTGGCTA+CGG | + | chr3_1:53084845-53084864 | None:intergenic | 30.0% |
| GCCAATTTGAATGGAAAAAT+CGG | - | chr3_1:53084847-53084866 | Msa0362220:intron | 30.0% | |
| !! | ACCGATTTTTCCATTCAAAT+TGG | + | chr3_1:53084851-53084870 | None:intergenic | 30.0% |
| TGAATGGAAAAATCGGTAAA+AGG | - | chr3_1:53084854-53084873 | Msa0362220:intron | 30.0% | |
| !! | AAAAAGGTGTTATAAGCAGA+AGG | - | chr3_1:53085150-53085169 | Msa0362220:CDS | 30.0% |
| !! | TACGTCTTATTTATAGGAGT+CGG | - | chr3_1:53085492-53085511 | Msa0362220:CDS | 30.0% |
| ! | TGGATATTTCTGAATGTACA+AGG | - | chr3_1:53084416-53084435 | Msa0362220:CDS | 30.0% |
| AGTCCAGAATTTATGACAAT+AGG | - | chr3_1:53084697-53084716 | Msa0362220:intron | 30.0% | |
| ! | TTTTCCATTCAAATTGGCTA+CGG | + | chr3_1:53084845-53084864 | None:intergenic | 30.0% |
| GCCAATTTGAATGGAAAAAT+CGG | - | chr3_1:53084847-53084866 | Msa0362220:intron | 30.0% | |
| !! | ACCGATTTTTCCATTCAAAT+TGG | + | chr3_1:53084851-53084870 | None:intergenic | 30.0% |
| TGAATGGAAAAATCGGTAAA+AGG | - | chr3_1:53084854-53084873 | Msa0362220:intron | 30.0% | |
| !! | AAAAAGGTGTTATAAGCAGA+AGG | - | chr3_1:53085150-53085169 | Msa0362220:CDS | 30.0% |
| !! | TACGTCTTATTTATAGGAGT+CGG | - | chr3_1:53085492-53085511 | Msa0362220:CDS | 30.0% |
| ATGATCTTTGTAGCATGTTC+TGG | + | chr3_1:53084472-53084491 | None:intergenic | 35.0% | |
| GAACATGCTACAAAGATCAT+TGG | - | chr3_1:53084472-53084491 | Msa0362220:CDS | 35.0% | |
| TATCTCCTTATGCAAGATAG+CGG | - | chr3_1:53084496-53084515 | Msa0362220:CDS | 35.0% | |
| ! | TGCTAAATTAGCTTCGTTTC+CGG | - | chr3_1:53084531-53084550 | Msa0362220:CDS | 35.0% |
| ACTTCACGGATCAAATTATC+CGG | + | chr3_1:53084553-53084572 | None:intergenic | 35.0% | |
| !!! | CATCTTTTGAAGCTCAGTTT+TGG | + | chr3_1:53084587-53084606 | None:intergenic | 35.0% |
| CAAAACTGAGCTTCAAAAGA+TGG | - | chr3_1:53084585-53084604 | Msa0362220:CDS | 35.0% | |
| CCATGATGCAGATTGTAATA+GGG | + | chr3_1:53084670-53084689 | None:intergenic | 35.0% | |
| ACCATGATGCAGATTGTAAT+AGG | + | chr3_1:53084671-53084690 | None:intergenic | 35.0% | |
| GTGCCTATTGTCATAAATTC+TGG | + | chr3_1:53084703-53084722 | None:intergenic | 35.0% | |
| GCAATCATAGTTATCAGTAG+TGG | + | chr3_1:53084794-53084813 | None:intergenic | 35.0% | |
| ACATGTCACTATTTCAGCAA+AGG | - | chr3_1:53084907-53084926 | Msa0362220:CDS | 35.0% | |
| ATTTCAGCAAAGGATATTGC+AGG | - | chr3_1:53084917-53084936 | Msa0362220:CDS | 35.0% | |
| AGTTGTAGGTTCTATCATCA+TGG | - | chr3_1:53084949-53084968 | Msa0362220:CDS | 35.0% | |
| GACATAGTCTCTCATATGTA+TGG | - | chr3_1:53084985-53085004 | Msa0362220:CDS | 35.0% | |
| !!! | GTCGAGCTTTTAAAACAAAG+AGG | - | chr3_1:53085078-53085097 | Msa0362220:CDS | 35.0% |
| GGAAGTGAAGCAATTGATAT+AGG | + | chr3_1:53085108-53085127 | None:intergenic | 35.0% | |
| ATCAATTGCTTCACTTCCAA+TGG | - | chr3_1:53085110-53085129 | Msa0362220:CDS | 35.0% | |
| AAGCTCTGTCAAATTGTAGT+CGG | + | chr3_1:53085208-53085227 | None:intergenic | 35.0% | |
| TCCGATTGCGAAATAGTATT+CGG | - | chr3_1:53085232-53085251 | Msa0362220:CDS | 35.0% | |
| ATAGTATTCGGCTAATTGAC+AGG | - | chr3_1:53085244-53085263 | Msa0362220:CDS | 35.0% | |
| !! | CTTAAGTGTTGAATACCAGT+TGG | + | chr3_1:53085462-53085481 | None:intergenic | 35.0% |
| !! | ACGTCTTATTTATAGGAGTC+GGG | - | chr3_1:53085493-53085512 | Msa0362220:CDS | 35.0% |
| ! | CAATGATCTTTTCCTTCATC+AGG | + | chr3_1:53085539-53085558 | None:intergenic | 35.0% |
| CTGATGAAGGAAAAGATCAT+TGG | - | chr3_1:53085537-53085556 | Msa0362220:CDS | 35.0% | |
| TATCCGACAATTTCAACAGA+GGG | + | chr3_1:53085578-53085597 | None:intergenic | 35.0% | |
| TTATCCGACAATTTCAACAG+AGG | + | chr3_1:53085579-53085598 | None:intergenic | 35.0% | |
| ATGATCTTTGTAGCATGTTC+TGG | + | chr3_1:53084472-53084491 | None:intergenic | 35.0% | |
| GAACATGCTACAAAGATCAT+TGG | - | chr3_1:53084472-53084491 | Msa0362220:CDS | 35.0% | |
| TATCTCCTTATGCAAGATAG+CGG | - | chr3_1:53084496-53084515 | Msa0362220:CDS | 35.0% | |
| ! | TGCTAAATTAGCTTCGTTTC+CGG | - | chr3_1:53084531-53084550 | Msa0362220:CDS | 35.0% |
| ACTTCACGGATCAAATTATC+CGG | + | chr3_1:53084553-53084572 | None:intergenic | 35.0% | |
| !!! | CATCTTTTGAAGCTCAGTTT+TGG | + | chr3_1:53084587-53084606 | None:intergenic | 35.0% |
| CAAAACTGAGCTTCAAAAGA+TGG | - | chr3_1:53084585-53084604 | Msa0362220:CDS | 35.0% | |
| CCATGATGCAGATTGTAATA+GGG | + | chr3_1:53084670-53084689 | None:intergenic | 35.0% | |
| ACCATGATGCAGATTGTAAT+AGG | + | chr3_1:53084671-53084690 | None:intergenic | 35.0% | |
| GTGCCTATTGTCATAAATTC+TGG | + | chr3_1:53084703-53084722 | None:intergenic | 35.0% | |
| GCAATCATAGTTATCAGTAG+TGG | + | chr3_1:53084794-53084813 | None:intergenic | 35.0% | |
| ACATGTCACTATTTCAGCAA+AGG | - | chr3_1:53084907-53084926 | Msa0362220:CDS | 35.0% | |
| ATTTCAGCAAAGGATATTGC+AGG | - | chr3_1:53084917-53084936 | Msa0362220:CDS | 35.0% | |
| AGTTGTAGGTTCTATCATCA+TGG | - | chr3_1:53084949-53084968 | Msa0362220:CDS | 35.0% | |
| GACATAGTCTCTCATATGTA+TGG | - | chr3_1:53084985-53085004 | Msa0362220:CDS | 35.0% | |
| !!! | GTCGAGCTTTTAAAACAAAG+AGG | - | chr3_1:53085078-53085097 | Msa0362220:CDS | 35.0% |
| GGAAGTGAAGCAATTGATAT+AGG | + | chr3_1:53085108-53085127 | None:intergenic | 35.0% | |
| ATCAATTGCTTCACTTCCAA+TGG | - | chr3_1:53085110-53085129 | Msa0362220:CDS | 35.0% | |
| AAGCTCTGTCAAATTGTAGT+CGG | + | chr3_1:53085208-53085227 | None:intergenic | 35.0% | |
| TCCGATTGCGAAATAGTATT+CGG | - | chr3_1:53085232-53085251 | Msa0362220:CDS | 35.0% | |
| ATAGTATTCGGCTAATTGAC+AGG | - | chr3_1:53085244-53085263 | Msa0362220:CDS | 35.0% | |
| !! | CTTAAGTGTTGAATACCAGT+TGG | + | chr3_1:53085462-53085481 | None:intergenic | 35.0% |
| !! | ACGTCTTATTTATAGGAGTC+GGG | - | chr3_1:53085493-53085512 | Msa0362220:CDS | 35.0% |
| ! | CAATGATCTTTTCCTTCATC+AGG | + | chr3_1:53085539-53085558 | None:intergenic | 35.0% |
| CTGATGAAGGAAAAGATCAT+TGG | - | chr3_1:53085537-53085556 | Msa0362220:CDS | 35.0% | |
| TATCCGACAATTTCAACAGA+GGG | + | chr3_1:53085578-53085597 | None:intergenic | 35.0% | |
| TTATCCGACAATTTCAACAG+AGG | + | chr3_1:53085579-53085598 | None:intergenic | 35.0% | |
| !!! | AAGCTCAGTTTTGGCCTTAA+GGG | + | chr3_1:53084578-53084597 | None:intergenic | 40.0% |
| ACTTGCCGAAGAAGAATTTC+CGG | + | chr3_1:53084632-53084651 | None:intergenic | 40.0% | |
| ! | TTCTTCTTCGGCAAGTTTTC+AGG | - | chr3_1:53084636-53084655 | Msa0362220:CDS | 40.0% |
| CCCTATTACAATCTGCATCA+TGG | - | chr3_1:53084667-53084686 | Msa0362220:intron | 40.0% | |
| GCCGAATACTATTTCGCAAT+CGG | + | chr3_1:53085236-53085255 | None:intergenic | 40.0% | |
| TCTGCCTTTCCCATGAATTT+CGG | + | chr3_1:53085367-53085386 | None:intergenic | 40.0% | |
| GCGACATGAATCTCAGTTTA+TGG | - | chr3_1:53085412-53085431 | Msa0362220:CDS | 40.0% | |
| !!! | AAGCTCAGTTTTGGCCTTAA+GGG | + | chr3_1:53084578-53084597 | None:intergenic | 40.0% |
| ACTTGCCGAAGAAGAATTTC+CGG | + | chr3_1:53084632-53084651 | None:intergenic | 40.0% | |
| ! | TTCTTCTTCGGCAAGTTTTC+AGG | - | chr3_1:53084636-53084655 | Msa0362220:CDS | 40.0% |
| CCCTATTACAATCTGCATCA+TGG | - | chr3_1:53084667-53084686 | Msa0362220:intron | 40.0% | |
| GCCGAATACTATTTCGCAAT+CGG | + | chr3_1:53085236-53085255 | None:intergenic | 40.0% | |
| TCTGCCTTTCCCATGAATTT+CGG | + | chr3_1:53085367-53085386 | None:intergenic | 40.0% | |
| GCGACATGAATCTCAGTTTA+TGG | - | chr3_1:53085412-53085431 | Msa0362220:CDS | 40.0% | |
| !!! | GAAGCTCAGTTTTGGCCTTA+AGG | + | chr3_1:53084579-53084598 | None:intergenic | 45.0% |
| ACGAGATCGATAATCTCGTC+CGG | - | chr3_1:53084610-53084629 | Msa0362220:CDS | 45.0% | |
| CTCGTCCGGAAATTCTTCTT+CGG | - | chr3_1:53084624-53084643 | Msa0362220:CDS | 45.0% | |
| ! | AGAACGGGTTTGATGTTCAG+TGG | + | chr3_1:53084725-53084744 | None:intergenic | 45.0% |
| CAAACCCGTTCTGCATTGTT+CGG | - | chr3_1:53084733-53084752 | Msa0362220:intron | 45.0% | |
| TCAGCCGTAGCCAATTTGAA+TGG | - | chr3_1:53084838-53084857 | Msa0362220:intron | 45.0% | |
| AGCAAAGGATATTGCAGGCA+TGG | - | chr3_1:53084922-53084941 | Msa0362220:CDS | 45.0% | |
| GCAGGCATGGAAATAGTTGT+AGG | - | chr3_1:53084935-53084954 | Msa0362220:CDS | 45.0% | |
| GAAGATGCGCCGAAATTCAT+GGG | - | chr3_1:53085355-53085374 | Msa0362220:CDS | 45.0% | |
| AGTTGGCAACATCATGAGCT+GGG | + | chr3_1:53085445-53085464 | None:intergenic | 45.0% | |
| !! | AAGAGCATTGCTCCTGATGA+AGG | - | chr3_1:53085524-53085543 | Msa0362220:CDS | 45.0% |
| GTGCCCTCTGTTGAAATTGT+CGG | - | chr3_1:53085572-53085591 | Msa0362220:CDS | 45.0% | |
| !!! | GAAGCTCAGTTTTGGCCTTA+AGG | + | chr3_1:53084579-53084598 | None:intergenic | 45.0% |
| ACGAGATCGATAATCTCGTC+CGG | - | chr3_1:53084610-53084629 | Msa0362220:CDS | 45.0% | |
| CTCGTCCGGAAATTCTTCTT+CGG | - | chr3_1:53084624-53084643 | Msa0362220:CDS | 45.0% | |
| ! | AGAACGGGTTTGATGTTCAG+TGG | + | chr3_1:53084725-53084744 | None:intergenic | 45.0% |
| CAAACCCGTTCTGCATTGTT+CGG | - | chr3_1:53084733-53084752 | Msa0362220:intron | 45.0% | |
| TCAGCCGTAGCCAATTTGAA+TGG | - | chr3_1:53084838-53084857 | Msa0362220:intron | 45.0% | |
| AGCAAAGGATATTGCAGGCA+TGG | - | chr3_1:53084922-53084941 | Msa0362220:CDS | 45.0% | |
| GCAGGCATGGAAATAGTTGT+AGG | - | chr3_1:53084935-53084954 | Msa0362220:CDS | 45.0% | |
| GAAGATGCGCCGAAATTCAT+GGG | - | chr3_1:53085355-53085374 | Msa0362220:CDS | 45.0% | |
| AGTTGGCAACATCATGAGCT+GGG | + | chr3_1:53085445-53085464 | None:intergenic | 45.0% | |
| !! | AAGAGCATTGCTCCTGATGA+AGG | - | chr3_1:53085524-53085543 | Msa0362220:CDS | 45.0% |
| GTGCCCTCTGTTGAAATTGT+CGG | - | chr3_1:53085572-53085591 | Msa0362220:CDS | 45.0% | |
| GATCCGTGAAGTTGCCCTTA+AGG | - | chr3_1:53084561-53084580 | Msa0362220:CDS | 50.0% | |
| ! | TGGCCTTAAGGGCAACTTCA+CGG | + | chr3_1:53084567-53084586 | None:intergenic | 50.0% |
| CGAACCGAACAATGCAGAAC+GGG | + | chr3_1:53084740-53084759 | None:intergenic | 50.0% | |
| CCGAACCGAACAATGCAGAA+CGG | + | chr3_1:53084741-53084760 | None:intergenic | 50.0% | |
| CCGTTCTGCATTGTTCGGTT+CGG | - | chr3_1:53084738-53084757 | Msa0362220:intron | 50.0% | |
| GGAAGATGCGCCGAAATTCA+TGG | - | chr3_1:53085354-53085373 | Msa0362220:CDS | 50.0% | |
| TGCGCCGAAATTCATGGGAA+AGG | - | chr3_1:53085360-53085379 | Msa0362220:CDS | 50.0% | |
| CAGTTGGCAACATCATGAGC+TGG | + | chr3_1:53085446-53085465 | None:intergenic | 50.0% | |
| CAGCTCATGATGTTGCCAAC+TGG | - | chr3_1:53085444-53085463 | Msa0362220:CDS | 50.0% | |
| GATCCGTGAAGTTGCCCTTA+AGG | - | chr3_1:53084561-53084580 | Msa0362220:CDS | 50.0% | |
| ! | TGGCCTTAAGGGCAACTTCA+CGG | + | chr3_1:53084567-53084586 | None:intergenic | 50.0% |
| CGAACCGAACAATGCAGAAC+GGG | + | chr3_1:53084740-53084759 | None:intergenic | 50.0% | |
| CCGAACCGAACAATGCAGAA+CGG | + | chr3_1:53084741-53084760 | None:intergenic | 50.0% | |
| CCGTTCTGCATTGTTCGGTT+CGG | - | chr3_1:53084738-53084757 | Msa0362220:intron | 50.0% | |
| GGAAGATGCGCCGAAATTCA+TGG | - | chr3_1:53085354-53085373 | Msa0362220:CDS | 50.0% | |
| TGCGCCGAAATTCATGGGAA+AGG | - | chr3_1:53085360-53085379 | Msa0362220:CDS | 50.0% | |
| CAGTTGGCAACATCATGAGC+TGG | + | chr3_1:53085446-53085465 | None:intergenic | 50.0% | |
| CAGCTCATGATGTTGCCAAC+TGG | - | chr3_1:53085444-53085463 | Msa0362220:CDS | 50.0% | |
| GCTCGCCGCTATCTTGCATA+AGG | + | chr3_1:53084504-53084523 | None:intergenic | 55.0% | |
| TCTAGTTGCGCCAGTGATCC+AGG | + | chr3_1:53085048-53085067 | None:intergenic | 55.0% | |
| !! | CATGTCGTTGGCTCTCAGCT+AGG | + | chr3_1:53085179-53085198 | None:intergenic | 55.0% |
| CTAGCTGAGAGCCAACGACA+TGG | - | chr3_1:53085177-53085196 | Msa0362220:CDS | 55.0% | |
| AGTCGGACTTGCCATGTCGT+TGG | + | chr3_1:53085191-53085210 | None:intergenic | 55.0% | |
| GCTCGCCGCTATCTTGCATA+AGG | + | chr3_1:53084504-53084523 | None:intergenic | 55.0% | |
| TCTAGTTGCGCCAGTGATCC+AGG | + | chr3_1:53085048-53085067 | None:intergenic | 55.0% | |
| !! | CATGTCGTTGGCTCTCAGCT+AGG | + | chr3_1:53085179-53085198 | None:intergenic | 55.0% |
| CTAGCTGAGAGCCAACGACA+TGG | - | chr3_1:53085177-53085196 | Msa0362220:CDS | 55.0% | |
| AGTCGGACTTGCCATGTCGT+TGG | + | chr3_1:53085191-53085210 | None:intergenic | 55.0% | |
| GACGAACAAGCGATGTCGCC+TGG | - | chr3_1:53085027-53085046 | Msa0362220:CDS | 60.0% | |
| AGCGATGTCGCCTGGATCAC+TGG | - | chr3_1:53085035-53085054 | Msa0362220:CDS | 60.0% | |
| GACGAACAAGCGATGTCGCC+TGG | - | chr3_1:53085027-53085046 | Msa0362220:CDS | 60.0% | |
| AGCGATGTCGCCTGGATCAC+TGG | - | chr3_1:53085035-53085054 | Msa0362220:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 53084415 | 53085598 | 53084415 | ID=Msa0362220;Name=Msa0362220 |
| chr3_1 | mRNA | 53084415 | 53085598 | 53084415 | ID=Msa0362220-mRNA-1;Parent=Msa0362220;Name=Msa0362220-mRNA-1;_AED=0.44;_eAED=0.51;_QI=0|0|0|1|1|1|2|0|330 |
| chr3_1 | exon | 53084858 | 53085598 | 53084858 | ID=Msa0362220-mRNA-1:exon:9635;Parent=Msa0362220-mRNA-1 |
| chr3_1 | exon | 53084415 | 53084666 | 53084415 | ID=Msa0362220-mRNA-1:exon:9634;Parent=Msa0362220-mRNA-1 |
| chr3_1 | CDS | 53084858 | 53085598 | 53084858 | ID=Msa0362220-mRNA-1:cds;Parent=Msa0362220-mRNA-1 |
| chr3_1 | CDS | 53084415 | 53084666 | 53084415 | ID=Msa0362220-mRNA-1:cds;Parent=Msa0362220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
