AlfalfaGEDB | Msa0363000

M. sativa cultivar zhongmu-4 / Msa0363000

KEGG: -
GO: -
PFAM: PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0363000	AES68952.1	90.213	797	75	1	88	881	27	823	0.0	1496

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0363000	sp\|O81832\|Y4729_ARATH	48.571	770	342	8	93	852	27	752	0.0	749

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0363000	G7IYX8	90.213	797	75	1	88	881	27	823	0.0	1496

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0363000	MtrunA17_Chr3g0084441	90.213	797	75	1	88	881	27	823	0.0	1496
Msa0363000	MtrunA17_Chr3g0084451	87.624	808	85	5	83	881	22	823	0.0	1454
Msa0363000	MtrunA17_Chr3g0084411	81.955	798	131	6	92	881	28	820	0.0	1357
Msa0363000	MtrunA17_Chr3g0084411	84.091	44	7	0	1	44	20	63	3.39e-16	83.6
Msa0363000	MtrunA17_Chr3g0084491	81.694	803	129	8	83	881	35	823	0.0	1340
Msa0363000	MtrunA17_Chr3g0084431	81.658	796	130	4	89	881	28	810	0.0	1318
Msa0363000	MtrunA17_Chr3g0084431	70.213	47	11	1	1	44	20	66	2.05e-11	68.2
Msa0363000	MtrunA17_Chr3g0084691	78.424	825	130	9	89	881	28	836	0.0	1308
Msa0363000	MtrunA17_Chr3g0084691	70.213	47	11	1	1	44	20	66	2.95e-11	67.4
Msa0363000	MtrunA17_Chr3g0084421	82.542	779	124	4	111	881	9	783	0.0	1306

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0363000	AT4G27290.2	48.840	776	377	8	93	852	27	798	765
Msa0363000	AT4G27290.1	48.571	770	342	8	93	852	27	752	749
Msa0363000	AT4G27300.1	46.724	809	396	14	90	881	25	815	704
Msa0363000	AT4G21380.1	43.527	811	422	10	103	881	44	850	686
Msa0363000	AT1G65790.1	44.815	810	406	12	104	881	43	843	682
Msa0363000	AT1G65800.1	43.704	810	419	14	104	881	43	847	659
Msa0363000	AT1G11340.1	41.849	822	437	12	92	881	21	833	645
Msa0363000	AT1G11410.1	40.789	836	435	12	92	881	24	845	621
Msa0363000	AT1G11410.4	40.789	836	435	12	92	881	31	852	621
Msa0363000	AT1G11410.3	40.772	829	431	12	99	881	7	821	617

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Find 166 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCACAGATGACATGTT+AGG	0.562151	3_1:-55065300	None:intergenic
AAAATATTACTAGGGCGTAA+TGG	0.477204	3_1:+55063808	Msa0363000:intron
AAACAAGGGTTTCATTAAAT+TGG	0.147619	3_1:-55059253	None:intergenic
AAACAGCAGCGGTGAGAATG+AGG	0.556242	3_1:+55062157	Msa0363000:CDS
AAACCAAAATCTGCTATCTT+TGG	0.231728	3_1:-55064279	None:intergenic
AAAGTAATCCAAGCTTCTGT+TGG	0.546128	3_1:-55064002	None:intergenic
AAATCTGATGTTTATAGTTT+TGG	0.221512	3_1:+55064806	Msa0363000:CDS
AACATCGGCACAAGGAACCG+AGG	0.668089	3_1:+55063868	Msa0363000:CDS
AACCAAAATCTGCTATCTTT+GGG	0.378597	3_1:-55064278	None:intergenic
AACCCGGGTTCACTTGGTTT+CGG	0.385247	3_1:-55065348	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGAAAAAACCTGCTTCAA+AGG	-	chr3_1:55059291-55059310	None:intergenic	30.0%
AACACTTTCCATTGCAAAAT+TGG	-	chr3_1:55059483-55059502	None:intergenic	30.0%
ATTTCTTAACAAGTTCCCTT+AGG	+	chr3_1:55059820-55059839	Msa0363000:intron	30.0%
TATGCTAACAAGTATCCTAA+GGG	-	chr3_1:55059838-55059857	None:intergenic	30.0%
ATATGCTAACAAGTATCCTA+AGG	-	chr3_1:55059839-55059858	None:intergenic	30.0%
CAAATCTTTGCTTAGATGTA+TGG	+	chr3_1:55060039-55060058	Msa0363000:intron	30.0%
AGATGTATGGCTTAATAAAG+TGG	+	chr3_1:55060052-55060071	Msa0363000:intron	30.0%
GAAGATAAGGTCAAACTTAA+AGG	+	chr3_1:55060251-55060270	Msa0363000:intron	30.0%
GTCCAAAACATGATCTATAA+TGG	-	chr3_1:55060401-55060420	None:intergenic	30.0%
CATTAGACTTAGAGAAATGT+GGG	-	chr3_1:55060522-55060541	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	55059206	55065464	55059206	ID=Msa0363000;Name=Msa0363000
chr3_1	mRNA	55059206	55065464	55059206	ID=Msa0363000-mRNA-1;Parent=Msa0363000;Name=Msa0363000-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0\|0.5\|0.33\|0.88\|1\|1\|9\|0\|881
chr3_1	exon	55059206	55059338	55059206	ID=Msa0363000-mRNA-1:exon:9964;Parent=Msa0363000-mRNA-1
chr3_1	exon	55060992	55061119	55060992	ID=Msa0363000-mRNA-1:exon:9965;Parent=Msa0363000-mRNA-1
chr3_1	exon	55061810	55063019	55061810	ID=Msa0363000-mRNA-1:exon:9966;Parent=Msa0363000-mRNA-1
chr3_1	exon	55063298	55063414	55063298	ID=Msa0363000-mRNA-1:exon:9967;Parent=Msa0363000-mRNA-1
chr3_1	exon	55063580	55063734	55063580	ID=Msa0363000-mRNA-1:exon:9968;Parent=Msa0363000-mRNA-1
chr3_1	exon	55063821	55064031	55063821	ID=Msa0363000-mRNA-1:exon:9969;Parent=Msa0363000-mRNA-1
chr3_1	exon	55064124	55064361	55064124	ID=Msa0363000-mRNA-1:exon:9970;Parent=Msa0363000-mRNA-1
chr3_1	exon	55064760	55064910	55064760	ID=Msa0363000-mRNA-1:exon:9971;Parent=Msa0363000-mRNA-1
chr3_1	exon	55065162	55065464	55065162	ID=Msa0363000-mRNA-1:exon:9972;Parent=Msa0363000-mRNA-1
chr3_1	CDS	55059206	55059338	55059206	ID=Msa0363000-mRNA-1:cds;Parent=Msa0363000-mRNA-1
chr3_1	CDS	55060992	55061119	55060992	ID=Msa0363000-mRNA-1:cds;Parent=Msa0363000-mRNA-1
chr3_1	CDS	55061810	55063019	55061810	ID=Msa0363000-mRNA-1:cds;Parent=Msa0363000-mRNA-1
chr3_1	CDS	55063298	55063414	55063298	ID=Msa0363000-mRNA-1:cds;Parent=Msa0363000-mRNA-1
chr3_1	CDS	55063580	55063734	55063580	ID=Msa0363000-mRNA-1:cds;Parent=Msa0363000-mRNA-1
chr3_1	CDS	55063821	55064031	55063821	ID=Msa0363000-mRNA-1:cds;Parent=Msa0363000-mRNA-1
chr3_1	CDS	55064124	55064361	55064124	ID=Msa0363000-mRNA-1:cds;Parent=Msa0363000-mRNA-1
chr3_1	CDS	55064760	55064910	55064760	ID=Msa0363000-mRNA-1:cds;Parent=Msa0363000-mRNA-1
chr3_1	CDS	55065162	55065464	55065162	ID=Msa0363000-mRNA-1:cds;Parent=Msa0363000-mRNA-1

Gene Sequence

>Msa0363000

ATGCCCACTTTCTCTAAACTGAACACTCTTACACCAAATCTGTTTATCCAATTTAATGAAACCCTTGTTTCTGCTGCTGGAACCTTTGAAGCAGGTTTTTTCAATTTTGGAGATCCACAACGCCAATACTTCGTTGTTGGACTCAGGAAACCTAGTTTTGTGAAAGATGCAGACAGCAGCGGTGAGAATGAGGATTTGTTGTGGGAAAGTTTTGATTATCCTGGTAATAATAATAATAATAATAATAATAAGAACAACAACAAAACATTTACTACTATTGCTCCAAATCAGTTTATGCAATACGGCGATACACTTGTTTCTTCAGCTGGAATGTATGAAGCGGGATTTTTCAACTTTGGAGATCCAGAACGTCAATACTTCAGTATATGGTACAAGAACATATCACCAAGGACAATTGTGTGGGTTGCCAACAGAAATACTCCTACGCAAAACTCAACAGCAATGCTGAAACTCAATGATCAAGGAAGTCTTGTTATTCTTGATGGTTCCAAAGGTGTCATATGGAACTCCAATTCATCAAGAACTGCGACGATGAAATCAGTTATTGTGCAGCTGTTGGATTCAGGAAACCTTGTTGTGAAAGATGCAAACAGCAGCGGTGAGAATGAGGATTTGTTGTGGGAAAGTTTTGATTATCCTGGTAACACTTTCCTTGCGGGAATGAAGCTGAAAAGTAATTTAGTTACTGGTCCATATAGATATCTCACATCTTGGAGAAGCCTTGAAGATCCTGCTGAAGGTGAGTGTTCATATAAGATAGATACGCATGGTTTTCCTCAACAGGTTACTACAAAGGGAGCAAAAGTTCTGTATAGAGGAGGGTCATGGAATGGATTTCTTTTCACTGGTGTTTCTTGGCAAAGAATGCACAGAGTCTTGAATTTCTCAGTAGTGTTCACTGACAAAGAATTCTCTTATCAATATGAAACTAGGAACAGTTCAATTATTACTAGAATGGAGCTAGATCCATCTGGAAATTCACGTCGTCTTCTATGGTCAGATAGTACACAACTTTGGAAGGCTATATCTTCTAGTCCTGCAGACCAGTGTGATGCGTATGAAATGTGTGGTATCAATTCTAACTGCAATGGTGATATATGTGAATGCTTAGAAGGTTTCATTCCAAAATTTCAACTAGAGTGGGAGTCATCAAATCGGTCTGGTGGATGTGTAAGAAAAACACGTTTAAATTGTCCCCATGGAGATGGATTTTTGAAGTACACAAACATGAAGTTGCCAGATACATCATCATCATGGTATAACAAGAGCTTGAGCCTTGAGGAATGTAAGACAAAGTGTTTGAAAAACTGTAATTGCACTGCATATGCAAATTCAGATATCAGCTATGGTGGGAGTGGCTGCTTACTCTGGTTTGACGACATTGTGGACATGAGAAAACATCAAGACCAAGGACAAGACATTTACATACGGCTGGCATCTTCAGAACTTGATCATGAAGAGAATAAGCGGAAATTGAAGCTTGCCGGGACTCTTGCAGGAGTTATTGCATTTATTATAGTAATAACCGTTCTCGTTTTGATCACATCAGCATATAGAAAGAAGCTTGGGTATATAAAAAAGTTATTTCTCTGGAAGCACAAGAAGGAGAAGGAATATGGTGATTTGGCAACAATATTTGATTTTTCAACCATCACTAATGCAACAAATAATTTCTCTATCAGAAACAAGTTGGGAGAAGGTGGTTTTGGACCAGTGTACAAGGGCGTAATGGTTGACGGCCAAGAGATTGCTGTTAAGAGGCTTTCTAAAACATCGGCACAAGGAACCGAGGAGTTCAAAAATGAAGTAAACTTGATGGCAACGCTTCAACACCGTAATCTTGTAAAACTTCTTGGTTGTTCTATTCGACAAGATGAAAAGTTGTTGATCTATGAATTCATGGCCAACAGAAGCTTGGATTACTTTATTTTTGATACTATGCGAAGCAAATTGCTAAATTGGATTAAGCGCCTGGAAATTATTGATGGAATTGCTCGAGGGCTGTTGTATCTTCATCAAGATTCTACACTAAGAATCATACATAGAGATATGAAAACAAGCAATATTCTTCTTGATATTGATATGATCCCAAAGATAGCAGATTTTGGTTTAGCCAGATCATTTAAGGGAGACGAAGCAGAGGCTAATACAAATAGATTGATCGGATCATATGGATATATGCCTCCAGAATATGCAGCGGATGGATCCTTCTCAATAAAATCTGATGTTTATAGTTTTGGAGTCATTGTACTTGAGATAATTAGCGGTAGAAAGAATCATGGATTTCGTGACCCTCTACATCGTCTTAACCTTCTTGGTCATGCATGGAGACTATGGATTGAAGAAAGACCACTGGAATTAATTGCTGACATATTATATGATGATGAGGCCATATGTACAGAAATAATAAGATTTATTCATGTGGGTTTATTGTGTGTACAACAGAAACCAGAAAATAGGCCTAACATGTCATCTGTGGTTTTTATGTTAAAGGGTGAAAAGTTACTTCCGAAACCAAGTGAACCCGGGTTCTACGCAGCAAGCGATAATAAAAATAGCATTAAATCTTCATCTAAAGAGTGTTCAATAAATGAAGCTTCAATCTCATTATTAGAGGCCCGATAG

Protein sequence

>Msa0363000

MPTFSKLNTLTPNLFIQFNETLVSAAGTFEAGFFNFGDPQRQYFVVGLRKPSFVKDADSSGENEDLLWESFDYPGNNNNNNNNKNNNKTFTTIAPNQFMQYGDTLVSSAGMYEAGFFNFGDPERQYFSIWYKNISPRTIVWVANRNTPTQNSTAMLKLNDQGSLVILDGSKGVIWNSNSSRTATMKSVIVQLLDSGNLVVKDANSSGENEDLLWESFDYPGNTFLAGMKLKSNLVTGPYRYLTSWRSLEDPAEGECSYKIDTHGFPQQVTTKGAKVLYRGGSWNGFLFTGVSWQRMHRVLNFSVVFTDKEFSYQYETRNSSIITRMELDPSGNSRRLLWSDSTQLWKAISSSPADQCDAYEMCGINSNCNGDICECLEGFIPKFQLEWESSNRSGGCVRKTRLNCPHGDGFLKYTNMKLPDTSSSWYNKSLSLEECKTKCLKNCNCTAYANSDISYGGSGCLLWFDDIVDMRKHQDQGQDIYIRLASSELDHEENKRKLKLAGTLAGVIAFIIVITVLVLITSAYRKKLGYIKKLFLWKHKKEKEYGDLATIFDFSTITNATNNFSIRNKLGEGGFGPVYKGVMVDGQEIAVKRLSKTSAQGTEEFKNEVNLMATLQHRNLVKLLGCSIRQDEKLLIYEFMANRSLDYFIFDTMRSKLLNWIKRLEIIDGIARGLLYLHQDSTLRIIHRDMKTSNILLDIDMIPKIADFGLARSFKGDEAEANTNRLIGSYGYMPPEYAADGSFSIKSDVYSFGVIVLEIISGRKNHGFRDPLHRLNLLGHAWRLWIEERPLELIADILYDDEAICTEIIRFIHVGLLCVQQKPENRPNMSSVVFMLKGEKLLPKPSEPGFYAASDNKNSIKSSSKECSINEASISLLEAR*