AlfalfaGEDB | Msa0363740

M. sativa cultivar zhongmu-4 / Msa0363740

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0363740	XP_039687179.1	35.349	215	75	4	538	691	10	221	1.52e-18	102
Msa0363740	XP_039687179.1	37.952	166	61	6	588	746	284	414	3.85e-12	82.4
Msa0363740	XP_039687179.1	81.801	544	66	5	17	527	10	553	0.0	817

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0363740	sp\|Q5Z4U5\|GAT20_ORYSJ	42.276	123	53	5	17	126	212	329	3.06e-16	84.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0363740	G7IV09	36.702	188	84	4	538	691	10	196	2.13e-17	97.8
Msa0363740	G7IV09	37.952	166	61	6	588	746	259	389	1.88e-12	82.4
Msa0363740	G7IV09	71.986	564	60	6	17	527	10	528	0.0	714

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TFs/TRs:

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Gene ID	Type	Classification
Msa0363740	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0363740	MtrunA17_Chr3g0102511	71.631	564	60	7	17	527	10	526	0.0	705
Msa0363740	MtrunA17_Chr3g0102511	35.638	188	84	5	538	691	10	194	3.65e-18	88.6
Msa0363740	MtrunA17_Chr3g0102511	37.952	166	61	6	588	746	257	387	3.47e-16	82.4
Msa0363740	MtrunA17_Chr3g0132751	50.920	163	56	3	18	177	163	304	2.63e-38	146
Msa0363740	MtrunA17_Chr3g0132751	55.147	136	39	1	552	665	195	330	1.31e-34	135
Msa0363740	MtrunA17_Chr4g0049741	50.000	96	43	3	18	112	140	231	1.42e-19	90.9
Msa0363740	MtrunA17_Chr4g0049741	38.596	114	54	4	557	655	175	287	9.12e-14	73.2
Msa0363740	MtrunA17_Chr5g0427661	43.750	96	48	2	18	110	167	259	3.93e-16	79.7
Msa0363740	MtrunA17_Chr5g0427661	40.964	83	42	2	559	638	203	281	8.23e-12	66.6
Msa0363740	MtrunA17_Chr3g0132761	41.975	81	44	1	18	98	164	241	8.29e-13	70.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0363740	AT3G21175.2	43.678	87	44	1	18	99	173	259	9.45e-14	73.2
Msa0363740	AT3G21175.2	62.791	43	16	0	559	601	217	259	5.27e-11	64.7
Msa0363740	AT3G21175.1	43.678	87	44	1	18	99	175	261	9.51e-14	73.2
Msa0363740	AT3G21175.1	62.791	43	16	0	559	601	219	261	5.23e-11	64.7
Msa0363740	AT1G51600.1	62.791	43	16	0	57	99	223	265	1.89e-13	72.4
Msa0363740	AT1G51600.1	62.791	43	16	0	559	601	223	265	7.09e-12	67.4
Msa0363740	AT1G51600.2	62.791	43	16	0	57	99	223	265	1.89e-13	72.4
Msa0363740	AT1G51600.2	62.791	43	16	0	559	601	223	265	7.09e-12	67.4
Msa0363740	AT4G24470.1	58.140	43	18	0	57	99	214	256	1.09e-11	67.0
Msa0363740	AT4G24470.1	43.056	72	36	1	559	630	214	280	6.17e-11	64.7

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Find 191 sgRNAs with CRISPR-Local

Find 1383 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGTCATCGGAATCTC+AGG	0.454040	3_1:-56397370	None:intergenic
AAAACATTATGTAATGCATG+CGG	0.668222	3_1:+56378393	Msa0363740:CDS
AAACGCTTCAAGAAAAGTCC+TGG	0.483720	3_1:+56391525	Msa0363740:CDS
AAACTTAGAGATCTCAGTAA+GGG	0.647846	3_1:+56378961	Msa0363740:CDS
AAATACCTCAATGTATGCAA+AGG	0.597141	3_1:-56397540	None:intergenic
AACACTTCTCAAATGCGTCC+CGG	0.512353	3_1:+56391683	Msa0363740:CDS
AACTCACAAAGATGTAGGAT+TGG	0.459534	3_1:-56378213	None:intergenic
AAGCGTTTAAACTGCCTATC+AGG	0.314872	3_1:-56391510	None:intergenic
AATACTCCTTTAATGCGCCA+TGG	0.575594	3_1:+56378357	Msa0363740:CDS
AATCACACTTAGAAGAATCA+CGG	0.610038	3_1:-56378160	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CGTTGAAAAATCTCACAAAA+TGG	-	chr3_1:56376455-56376474	None:intergenic	30.0%
ATGGACAAACAATATAAGAG+AGG	-	chr3_1:56376575-56376594	None:intergenic	30.0%
GCTCTAACACATTTCAATAT+AGG	-	chr3_1:56376714-56376733	None:intergenic	30.0%
CAATATAGGAAACAAGTAAC+TGG	-	chr3_1:56376937-56376956	None:intergenic	30.0%
CATAAGCGTGAATTCAAAAA+AGG	-	chr3_1:56377356-56377375	None:intergenic	30.0%
AACTTCAAGTACATAAAACG+TGG	-	chr3_1:56377559-56377578	None:intergenic	30.0%
GAGAATTGAGAATGTAAAAG+GGG	+	chr3_1:56377790-56377809	Msa0363740:intron	30.0%
ATTTCTCAGCAACTAAAGTA+AGG	+	chr3_1:56377915-56377934	Msa0363740:intron	30.0%
ACATAATGCATAGTTGTTGA+TGG	+	chr3_1:56377946-56377965	Msa0363740:intron	30.0%
AATCACACTTAGAAGAATCA+CGG	-	chr3_1:56378163-56378182	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	56376190	56397569	56376190	ID=Msa0363740;Name=Msa0363740
chr3_1	mRNA	56376190	56397569	56376190	ID=Msa0363740-mRNA-1;Parent=Msa0363740;Name=Msa0363740-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0\|0.6\|0.57\|0.96\|0.8\|0.84\|26\|231\|746
chr3_1	exon	56376190	56376198	56376190	ID=Msa0363740-mRNA-1:exon:10377;Parent=Msa0363740-mRNA-1
chr3_1	exon	56377647	56377687	56377647	ID=Msa0363740-mRNA-1:exon:10378;Parent=Msa0363740-mRNA-1
chr3_1	exon	56378118	56378228	56378118	ID=Msa0363740-mRNA-1:exon:10379;Parent=Msa0363740-mRNA-1
chr3_1	exon	56378323	56378434	56378323	ID=Msa0363740-mRNA-1:exon:10380;Parent=Msa0363740-mRNA-1
chr3_1	exon	56378958	56379017	56378958	ID=Msa0363740-mRNA-1:exon:10381;Parent=Msa0363740-mRNA-1
chr3_1	exon	56380020	56380079	56380020	ID=Msa0363740-mRNA-1:exon:10382;Parent=Msa0363740-mRNA-1
chr3_1	exon	56381366	56381428	56381366	ID=Msa0363740-mRNA-1:exon:10383;Parent=Msa0363740-mRNA-1
chr3_1	exon	56381513	56381584	56381513	ID=Msa0363740-mRNA-1:exon:10384;Parent=Msa0363740-mRNA-1
chr3_1	exon	56382554	56382616	56382554	ID=Msa0363740-mRNA-1:exon:10385;Parent=Msa0363740-mRNA-1
chr3_1	exon	56382701	56382775	56382701	ID=Msa0363740-mRNA-1:exon:10386;Parent=Msa0363740-mRNA-1
chr3_1	exon	56382883	56382948	56382883	ID=Msa0363740-mRNA-1:exon:10387;Parent=Msa0363740-mRNA-1
chr3_1	exon	56383032	56383106	56383032	ID=Msa0363740-mRNA-1:exon:10388;Parent=Msa0363740-mRNA-1
chr3_1	exon	56383218	56383283	56383218	ID=Msa0363740-mRNA-1:exon:10389;Parent=Msa0363740-mRNA-1
chr3_1	exon	56383368	56383439	56383368	ID=Msa0363740-mRNA-1:exon:10390;Parent=Msa0363740-mRNA-1
chr3_1	exon	56383647	56383706	56383647	ID=Msa0363740-mRNA-1:exon:10391;Parent=Msa0363740-mRNA-1
chr3_1	exon	56383791	56383871	56383791	ID=Msa0363740-mRNA-1:exon:10392;Parent=Msa0363740-mRNA-1
chr3_1	exon	56385372	56385618	56385372	ID=Msa0363740-mRNA-1:exon:10393;Parent=Msa0363740-mRNA-1
chr3_1	exon	56385628	56385874	56385628	ID=Msa0363740-mRNA-1:exon:10394;Parent=Msa0363740-mRNA-1
chr3_1	exon	56391467	56391553	56391467	ID=Msa0363740-mRNA-1:exon:10395;Parent=Msa0363740-mRNA-1
chr3_1	exon	56391649	56391760	56391649	ID=Msa0363740-mRNA-1:exon:10396;Parent=Msa0363740-mRNA-1
chr3_1	exon	56392252	56392311	56392252	ID=Msa0363740-mRNA-1:exon:10397;Parent=Msa0363740-mRNA-1
chr3_1	exon	56393420	56393494	56393420	ID=Msa0363740-mRNA-1:exon:10398;Parent=Msa0363740-mRNA-1
chr3_1	exon	56393623	56393703	56393623	ID=Msa0363740-mRNA-1:exon:10399;Parent=Msa0363740-mRNA-1
chr3_1	exon	56395520	56395594	56395520	ID=Msa0363740-mRNA-1:exon:10400;Parent=Msa0363740-mRNA-1
chr3_1	exon	56395723	56395803	56395723	ID=Msa0363740-mRNA-1:exon:10401;Parent=Msa0363740-mRNA-1
chr3_1	exon	56397249	56397569	56397249	ID=Msa0363740-mRNA-1:exon:10402;Parent=Msa0363740-mRNA-1
chr3_1	CDS	56376190	56376198	56376190	ID=Msa0363740-mRNA-1:cds;Parent=Msa0363740-mRNA-1
chr3_1	CDS	56377647	56377687	56377647	ID=Msa0363740-mRNA-1:cds;Parent=Msa0363740-mRNA-1
chr3_1	CDS	56378118	56378228	56378118	ID=Msa0363740-mRNA-1:cds;Parent=Msa0363740-mRNA-1
chr3_1	CDS	56378323	56378434	56378323	ID=Msa0363740-mRNA-1:cds;Parent=Msa0363740-mRNA-1
chr3_1	CDS	56378958	56379017	56378958	ID=Msa0363740-mRNA-1:cds;Parent=Msa0363740-mRNA-1
chr3_1	CDS	56380020	56380079	56380020	ID=Msa0363740-mRNA-1:cds;Parent=Msa0363740-mRNA-1
chr3_1	CDS	56381366	56381428	56381366	ID=Msa0363740-mRNA-1:cds;Parent=Msa0363740-mRNA-1
chr3_1	CDS	56381513	56381584	56381513	ID=Msa0363740-mRNA-1:cds;Parent=Msa0363740-mRNA-1
chr3_1	CDS	56382554	56382616	56382554	ID=Msa0363740-mRNA-1:cds;Parent=Msa0363740-mRNA-1
chr3_1	CDS	56382701	56382775	56382701	ID=Msa0363740-mRNA-1:cds;Parent=Msa0363740-mRNA-1
chr3_1	CDS	56382883	56382948	56382883	ID=Msa0363740-mRNA-1:cds;Parent=Msa0363740-mRNA-1
chr3_1	CDS	56383032	56383106	56383032	ID=Msa0363740-mRNA-1:cds;Parent=Msa0363740-mRNA-1
chr3_1	CDS	56383218	56383283	56383218	ID=Msa0363740-mRNA-1:cds;Parent=Msa0363740-mRNA-1
chr3_1	CDS	56383368	56383439	56383368	ID=Msa0363740-mRNA-1:cds;Parent=Msa0363740-mRNA-1
chr3_1	CDS	56383647	56383706	56383647	ID=Msa0363740-mRNA-1:cds;Parent=Msa0363740-mRNA-1
chr3_1	CDS	56383791	56383871	56383791	ID=Msa0363740-mRNA-1:cds;Parent=Msa0363740-mRNA-1
chr3_1	CDS	56385372	56385618	56385372	ID=Msa0363740-mRNA-1:cds;Parent=Msa0363740-mRNA-1
chr3_1	CDS	56385628	56385874	56385628	ID=Msa0363740-mRNA-1:cds;Parent=Msa0363740-mRNA-1
chr3_1	CDS	56391467	56391553	56391467	ID=Msa0363740-mRNA-1:cds;Parent=Msa0363740-mRNA-1
chr3_1	CDS	56391649	56391760	56391649	ID=Msa0363740-mRNA-1:cds;Parent=Msa0363740-mRNA-1
chr3_1	CDS	56392252	56392311	56392252	ID=Msa0363740-mRNA-1:cds;Parent=Msa0363740-mRNA-1
chr3_1	CDS	56393420	56393494	56393420	ID=Msa0363740-mRNA-1:cds;Parent=Msa0363740-mRNA-1
chr3_1	CDS	56393623	56393703	56393623	ID=Msa0363740-mRNA-1:cds;Parent=Msa0363740-mRNA-1
chr3_1	CDS	56395520	56395594	56395520	ID=Msa0363740-mRNA-1:cds;Parent=Msa0363740-mRNA-1
chr3_1	CDS	56395723	56395803	56395723	ID=Msa0363740-mRNA-1:cds;Parent=Msa0363740-mRNA-1
chr3_1	CDS	56397249	56397338	56397249	ID=Msa0363740-mRNA-1:cds;Parent=Msa0363740-mRNA-1
chr3_1	three_prime_UTR	56397339	56397569	56397339	ID=Msa0363740-mRNA-1:three_prime_utr;Parent=Msa0363740-mRNA-1

Gene Sequence

>Msa0363740

ATGACTAAAGTAGCACTTAGCAGCAATAACTTTTGCAAAACTAGGGGATTGATGCGTCAAAAGAATAGGCAGTTTAAATTCTTGAAGAAAAGCCGTGATTCTTCTAAGTGTGATTCAACACTGAGTGCTGGTCGAGATGGCTCTCCCAATCCTACATCTTTACGTAGATGTCAACATTGTGTAGTCAACGAAGATAATACTCCTTTAATGCGCCATGGGCCAGCTGGAGCAAAAACATTATGTAATGCATGCGGCATCGTTTGGGCCAAAAAGAGGAAACTTAGAGATCTCAGTAAGGGACAAATAATTCTCTCTGTTGAGCAAAGTGATCTGGATGCTCTAATTGATGTCAATGTTGTTGAAGGAGAATTGCCTGCCATCCAAAATGAACAAGATCCTCTTGTTGATGTCAATATTGCTGTTCTTGAAGAATTGTCTGTCATCCAAAATGAACAGGTTATCTCTGAAGATCCTTCCAGAGCCGTCGCCGGTAAAGGTTCAAATAATAAATTAAACCCTTGTGATGAGGATCCTCTTATTGATGTCAATATTATTGCTTTTGGAGAATTGCCTGTCATCCAAAATGAACAAGGTATTTCTGAAGATCCTTCCAAAACCATCACTGTTGAAGGTTCAAATAATCACACATTAAACCCCTTTGACGAGGATCCTCTTTTTGATGTCAATATCACTGTTCATGATGGAAAATTGCCTTTCATCCAAAATGAACATGGTATTTCTGAAGATCCTTCCAAAGCCATAGTTGGTGAAAGAGCATATAATCATGCATTAAACCTCTGTGACGAGGATCCTCTTATTGATGTCAATATTACTGTTCTTGAAAGAGAATTGCCTGTCATCCACAATGAACAAGGTATTTCTGAAGATCCTTCCAGAGCCCTCGTTGTTGAAGGTTCAAATAATCATGCTTTAAACCCCTGTGAGGATGCTCTAATTGATGTCAATGTTGTTGAAGGAGAATTGCTTGCTACCCAAAAGGAACAAGGTATTTCTGAAGATCCTTCCAAAGACATCATTGTTGAACGTGAAGGTTCAAGTACTCATGCATTAAACCCCTGTGACAAGCCAAGGAAGAGCTACACATTTTCAGAGATTATAGCAACGGTGGAGTCATTGTTGGCATTTCTCGATAAGAACTTGCCATCTGCCTCGGAGGTAGACTACACCTCGAGTCAAGCGAAGTATAGAAGGATTGTGCTCGAGACTACAACTGTGACAGGGCAGACTGTCCGCAATGACATCACTAGGAGGATGTTGGATCTTCCTGTGCCTTCACAGCAGATTATAGAGGGATGGTTGGATGTTTTGGCAAAGACACCTTCTGAGGTCTCGTCTGAGAGACCACTCCGTACTACGTTCTCTGAACCTCCAAGGAGTAGGGAGACATTTGTTCATCCTGCCACTCCTAGAAGTGTTGCAGCTGCTGCTGGGAATGAGGTTGGGCCATCCACCTCTAAGGTGGTTCAGGAGGAGCCAGTGGGTGAAGAGGTTCCTGTGGTTGTTCCTGAGCCTGTTGCTTCTCCTCAGTTAAACAGCATTCATAGCAGTCACCTGATTCAGATGCTGCGTCACAAGGATGGGCGGTTACGCTTCAAGCGAAGTCCTGATAGGCAGTTTAAACGCTTCAAGAAAAGTCCTGGTTCTTTACGTAGATGTCAACATTGTGGACTCGACGAAAATAACACTTCTCAAATGCGTCCCGGGCCAGCTGGAAGATTTACTCTATGTAATACATGCGGCGTCACGTGGGCCAAAAAGGGGATACTTAGAGATCTCAGTAAGAGACGAAGAACTCATTCTGTTGATCAAAGTGGTCTGGGTATTTCTGAAGACCCTTCCAAGCTCATTGTTGCCGATGGTTCGAACAATCATGCATTGAACCCCGTTGAAGAGGAATTGCCTGAATCTTCAGAACACCCAACAAACACTCTACCATTAGGAATTGTTCATTCTTCAGAAAATGATGATGGACAGAGTATTTCCGAAGATCCTTCCAAGGCCACAACTACTGAAGGTTTGGATTATCATGCATTGAACCCTATTGAAAAGGAATTGCCCGAATCTTCAGAACACCCAACAAACACACTACCGTTAGGAATTGATCATTCTTCAGAAAATGATGATGTCCAGCCGATGAAGAGATACTTGTTTTCAGAGTTTGTGGCAACAGCAGAGTCGTTTTTGGCATTTCTCAACGAGGACTTGCCATCTTTCTCGTAG

Protein sequence

>Msa0363740

MTKVALSSNNFCKTRGLMRQKNRQFKFLKKSRDSSKCDSTLSAGRDGSPNPTSLRRCQHCVVNEDNTPLMRHGPAGAKTLCNACGIVWAKKRKLRDLSKGQIILSVEQSDLDALIDVNVVEGELPAIQNEQDPLVDVNIAVLEELSVIQNEQVISEDPSRAVAGKGSNNKLNPCDEDPLIDVNIIAFGELPVIQNEQGISEDPSKTITVEGSNNHTLNPFDEDPLFDVNITVHDGKLPFIQNEHGISEDPSKAIVGERAYNHALNLCDEDPLIDVNITVLERELPVIHNEQGISEDPSRALVVEGSNNHALNPCEDALIDVNVVEGELLATQKEQGISEDPSKDIIVEREGSSTHALNPCDKPRKSYTFSEIIATVESLLAFLDKNLPSASEVDYTSSQAKYRRIVLETTTVTGQTVRNDITRRMLDLPVPSQQIIEGWLDVLAKTPSEVSSERPLRTTFSEPPRSRETFVHPATPRSVAAAAGNEVGPSTSKVVQEEPVGEEVPVVVPEPVASPQLNSIHSSHLIQMLRHKDGRLRFKRSPDRQFKRFKKSPGSLRRCQHCGLDENNTSQMRPGPAGRFTLCNTCGVTWAKKGILRDLSKRRRTHSVDQSGLGISEDPSKLIVADGSNNHALNPVEEELPESSEHPTNTLPLGIVHSSENDDGQSISEDPSKATTTEGLDYHALNPIEKELPESSEHPTNTLPLGIDHSSENDDVQPMKRYLFSEFVATAESFLAFLNEDLPSFS*