AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0364040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0364040 MtrunA17_Chr3g0103391 80.851 329 8 2 1 274 1 329 0.0 509
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0364040 AT5G12840.4 39.844 256 91 8 16 213 17 267 4.54e-40 140
Msa0364040 AT5G12840.2 39.844 256 91 8 16 213 17 267 4.54e-40 140
Msa0364040 AT5G12840.5 39.689 257 91 9 16 213 17 268 2.39e-38 136
Msa0364040 AT5G12840.3 39.689 257 91 9 16 213 17 268 2.39e-38 136
Msa0364040 AT5G12840.1 39.689 257 91 9 16 213 17 268 2.39e-38 136
Msa0364040 AT3G20910.1 38.356 219 50 9 116 274 110 303 4.69e-26 104

Find 130 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTATCAGGATCCATATTA+TGG 0.185298 3_1:+56728628 Msa0364040:CDS
GTATATCCTAGTGATATATT+TGG 0.239472 3_1:+56730288 Msa0364040:three_prime_UTR
TACCAAACTCTCTTGTTTCT+TGG 0.260579 3_1:+56730585 Msa0364040:three_prime_UTR
CCTCGGTTGATTTGCAGTTT+CGG 0.272870 3_1:-56727301 None:intergenic
TTCCTCATTCATCTCACTAT+TGG 0.285307 3_1:-56727484 None:intergenic
TTGATTTGCAGTTTCGGACT+TGG 0.313960 3_1:-56727295 None:intergenic
GTGGAAGAAGGGGACTGTTC+AGG 0.315135 3_1:+56730159 Msa0364040:CDS
GTTTGTTCTGTAAACTTAAC+TGG 0.315292 3_1:+56730608 Msa0364040:three_prime_UTR
ACCAAACTCTCTTGTTTCTT+GGG 0.332279 3_1:+56730586 Msa0364040:three_prime_UTR
TATGCAATCTTCAAGGTATC+AGG 0.338770 3_1:+56730128 Msa0364040:CDS
ATATGCCGGCAAATCATTCT+TGG 0.341646 3_1:+56730347 Msa0364040:three_prime_UTR
TTCTAAAGCACCTGATTGAT+TGG 0.345684 3_1:-56727544 None:intergenic
CCAGACATTGTTTGCGCTAC+AGG 0.346287 3_1:-56727393 None:intergenic
GTAGTCAACTTCAGCTGATA+TGG 0.354835 3_1:+56730517 Msa0364040:three_prime_UTR
CAAAGACTGGCCTTCCTCAT+TGG 0.355087 3_1:-56727460 None:intergenic
TCGCATGTTGGGAGAATTCC+AGG 0.360834 3_1:-56730046 None:intergenic
GCAAGAGGATCAAACGAAAA+TGG 0.361215 3_1:+56730075 Msa0364040:CDS
TTCTTCTTGATAGGAAATTA+CGG 0.368800 3_1:+56727699 Msa0364040:intron
GCATACCATTGTTGTTGTTA+TGG 0.371144 3_1:-56730110 None:intergenic
ACCCAAGAAACAAGAGAGTT+TGG 0.375454 3_1:-56730587 None:intergenic
ATGTGCTACAAATCCTTATC+AGG 0.378434 3_1:+56728615 Msa0364040:CDS
GTACCTTACCTTGGTTATCT+TGG 0.390733 3_1:+56730318 Msa0364040:three_prime_UTR
CTTGCATCTTGTCGCATGTT+GGG 0.394811 3_1:-56730057 None:intergenic
ATGGTGTGAATGATATAATA+TGG 0.403792 3_1:+56730387 Msa0364040:three_prime_UTR
CTTATCAGGATCCATATTAT+GGG 0.407754 3_1:+56728629 Msa0364040:CDS
TCGCAATCAATTAGTTCATC+TGG 0.408092 3_1:+56729991 Msa0364040:CDS
GAAAACTGATGGTGAGGCCT+CGG 0.419006 3_1:+56729936 Msa0364040:CDS
GAGGCCTCGGGAAAGGATAA+TGG 0.429841 3_1:+56729949 Msa0364040:CDS
AAAAGCCAAGAATGATTTGC+CGG 0.433683 3_1:-56730352 None:intergenic
CCTGTAGCGCAAACAATGTC+TGG 0.435636 3_1:+56727393 Msa0364040:CDS
ACAATCAAGAGAGGATGAAT+TGG 0.445592 3_1:-56727418 None:intergenic
TCCTCTCTTGATTGTCCCAA+TGG 0.445841 3_1:+56727426 Msa0364040:CDS
GGGGAGAAGAATGGTGATTG+GGG 0.447626 3_1:+56730411 Msa0364040:three_prime_UTR
TGTCTAGATTCATGAAGATA+TGG 0.448950 3_1:-56729865 None:intergenic
CCATAATATGGATCCTGATA+AGG 0.451848 3_1:-56728628 None:intergenic
CTTCAGACTCTGCGGAAACC+TGG 0.454407 3_1:+56730028 Msa0364040:CDS
TGGTGTGAATGATATAATAT+GGG 0.455479 3_1:+56730388 Msa0364040:three_prime_UTR
TCTAAAGCACCTGATTGATT+GGG 0.457401 3_1:-56727543 None:intergenic
CCTCTGCGATGCCTCGTTCG+AGG 0.460703 3_1:-56730202 None:intergenic
TCTTGCATCTTGTCGCATGT+TGG 0.462937 3_1:-56730058 None:intergenic
TGATTTGCAGTTTCGGACTT+GGG 0.466356 3_1:-56727294 None:intergenic
TGGAAGAAGGGGACTGTTCA+GGG 0.467131 3_1:+56730160 Msa0364040:CDS
TTGAGAAGGGCAAGAGGCAC+CGG 0.467176 3_1:+56729898 Msa0364040:CDS
CCTGCTGCTCCCAATCAATC+AGG 0.469165 3_1:+56727534 Msa0364040:CDS
CCTGATTGATTGGGAGCAGC+AGG 0.471231 3_1:-56727534 None:intergenic
ATTGAAATTGAAAATTCAAA+GGG 0.474297 3_1:-56726302 None:intergenic
AATTGAAATTGAAAATTCAA+AGG 0.477666 3_1:-56726303 None:intergenic
ATTGATTGCGACGACAAGAC+TGG 0.480972 3_1:-56729979 None:intergenic
GCTGATATGGATGGATGGTC+AGG 0.495169 3_1:+56730530 Msa0364040:three_prime_UTR
ACTCCTCAGCTGGAACTTGT+TGG 0.498120 3_1:+56727786 Msa0364040:CDS
TCGGGAAAGGATAATGGCTC+TGG 0.498937 3_1:+56729955 Msa0364040:CDS
ATTGGATTCTGAATCACCAT+TGG 0.502864 3_1:-56727442 None:intergenic
CAGGGTGAAAGAGTGGAAGA+AGG 0.503255 3_1:+56730147 Msa0364040:CDS
AAAGAGAGAGAGAAAGAGAG+AGG 0.503374 3_1:+56726261 Msa0364040:five_prime_UTR
TTGGATTCTGAATCACCATT+GGG 0.505994 3_1:-56727441 None:intergenic
GTTCTGTAAACTTAACTGGT+TGG 0.508613 3_1:+56730612 Msa0364040:three_prime_UTR
TTTCTTTGCAAATCGTCCTC+CGG 0.509061 3_1:-56729917 None:intergenic
AAAACTGATGGTGAGGCCTC+GGG 0.514204 3_1:+56729937 Msa0364040:CDS
GAACCTTGGTGGCGTGGTGT+TGG 0.516801 3_1:+56727363 Msa0364040:CDS
CCTCACACAGACTCCTCAGC+TGG 0.517659 3_1:+56727776 Msa0364040:CDS
ACCATTGTTGTTGTTATGGT+AGG 0.521132 3_1:-56730106 None:intergenic
AGGGTGAAAGAGTGGAAGAA+GGG 0.525419 3_1:+56730148 Msa0364040:CDS
ACAATGGTATGCAATCTTCA+AGG 0.528717 3_1:+56730121 Msa0364040:CDS
AGCTTATCCTCACCAGCCGT+TGG 0.530288 3_1:+56728663 Msa0364040:CDS
AAGAGAGAGAGAAAGAGAGA+GGG 0.531234 3_1:+56726262 Msa0364040:five_prime_UTR
TGATGGTGAGGCCTCGGGAA+AGG 0.531610 3_1:+56729942 Msa0364040:CDS
GTGGTGTTTATTCTGAACCT+TGG 0.535143 3_1:+56727349 Msa0364040:CDS
CTATCCTCCCATGCAGGAAG+GGG 0.545157 3_1:-56730248 None:intergenic
ATCTATCCTCCCATGCAGGA+AGG 0.546592 3_1:-56730250 None:intergenic
TCTCACTATTGGACAAAGAC+TGG 0.550556 3_1:-56727473 None:intergenic
TCTATCCTCCCATGCAGGAA+GGG 0.550690 3_1:-56730249 None:intergenic
CAGCATCTATCCTCCCATGC+AGG 0.556616 3_1:-56730254 None:intergenic
GACATCAGCATGCTTTGAGA+AGG 0.559068 3_1:+56729884 Msa0364040:CDS
GGTGAATGAGTACCTTACCT+TGG 0.559324 3_1:+56730309 Msa0364040:three_prime_UTR
CATTCACCAAATATATCACT+AGG 0.561969 3_1:-56730294 None:intergenic
GGGAGGATAGATGCTGAGGT+TGG 0.566065 3_1:+56730261 Msa0364040:three_prime_UTR
CAGGTTTCCGCAGAGTCTGA+AGG 0.567519 3_1:-56730027 None:intergenic
GATCCTCATTCCTTTCAGCC+CGG 0.568473 3_1:+56727327 Msa0364040:CDS
ATAAACACCACCGGGCTGAA+AGG 0.570819 3_1:-56727337 None:intergenic
CTGCCAAGATAACCAAGGTA+AGG 0.572997 3_1:-56730321 None:intergenic
ATGCACTTACCTGAGGAAGA+AGG 0.575777 3_1:-56726386 None:intergenic
TCACATACCAACGGCTGGTG+AGG 0.579630 3_1:-56728670 None:intergenic
AAGGTATCAGGGTGAAAGAG+TGG 0.579884 3_1:+56730140 Msa0364040:CDS
GTGTTTATTCTGAACCTTGG+TGG 0.581264 3_1:+56727352 Msa0364040:CDS
AGGTTCAGAATAAACACCAC+CGG 0.582494 3_1:-56727346 None:intergenic
GGAAGATGATGATGCTGCTA+AGG 0.583652 3_1:+56727503 Msa0364040:CDS
TCAACTTCAGCTGATATGGA+TGG 0.586528 3_1:+56730521 Msa0364040:three_prime_UTR
TAATGTCACATACCAACGGC+TGG 0.588332 3_1:-56728675 None:intergenic
TATTCTGAACCTTGGTGGCG+TGG 0.589853 3_1:+56727357 Msa0364040:CDS
TGCAAAGAAAACTGATGGTG+AGG 0.591393 3_1:+56729930 Msa0364040:CDS
CTTCAGCTGATATGGATGGA+TGG 0.591845 3_1:+56730525 Msa0364040:three_prime_UTR
GGATCAAACGAAAATGGTGG+TGG 0.592838 3_1:+56730081 Msa0364040:CDS
GTGTGAATGATATAATATGG+GGG 0.597919 3_1:+56730390 Msa0364040:three_prime_UTR
ATGCAATCTTCAAGGTATCA+GGG 0.599536 3_1:+56730129 Msa0364040:CDS
GGAAATTACGGACAAGAACA+AGG 0.600249 3_1:+56727711 Msa0364040:intron
TTATCAGGATCCATATTATG+GGG 0.600718 3_1:+56728630 Msa0364040:CDS
TATCTTGGCAGTATATATGC+CGG 0.601362 3_1:+56730333 Msa0364040:three_prime_UTR
CCTCATTCCTTTCAGCCCGG+TGG 0.605967 3_1:+56727330 Msa0364040:CDS
CATGCTTTGAGAAGGGCAAG+AGG 0.607747 3_1:+56729892 Msa0364040:CDS
ATCCTCCCATGCAGGAAGGG+GGG 0.608555 3_1:-56730246 None:intergenic
TATCCTCCCATGCAGGAAGG+GGG 0.610586 3_1:-56730247 None:intergenic
GTCCAATAGTGAGATGAATG+AGG 0.611764 3_1:+56727482 Msa0364040:CDS
GGTGTGAATGATATAATATG+GGG 0.614073 3_1:+56730389 Msa0364040:three_prime_UTR
GATTCAGAATCCAATGAGGA+AGG 0.616324 3_1:+56727450 Msa0364040:CDS
ACATCAGCATGCTTTGAGAA+GGG 0.618856 3_1:+56729885 Msa0364040:CDS
GACTGTTCAGGGCAGCTACG+TGG 0.623934 3_1:+56730171 Msa0364040:CDS
TCCTACCATAACAACAACAA+TGG 0.624469 3_1:+56730105 Msa0364040:CDS
CGATTTGCAAAGAAAACTGA+TGG 0.624607 3_1:+56729925 Msa0364040:CDS
CCACCGGGCTGAAAGGAATG+AGG 0.626610 3_1:-56727330 None:intergenic
AGAAGGGCAAGAGGCACCGG+AGG 0.637214 3_1:+56729901 Msa0364040:CDS
TGTGAATGATATAATATGGG+GGG 0.639434 3_1:+56730391 Msa0364040:three_prime_UTR
GGGTGAAAGAGTGGAAGAAG+GGG 0.642943 3_1:+56730149 Msa0364040:CDS
CCAGCTGAGGAGTCTGTGTG+AGG 0.649225 3_1:-56727776 None:intergenic
GGTTCAGAATAAACACCACC+GGG 0.650774 3_1:-56727345 None:intergenic
AGAGCCATTATCCTTTCCCG+AGG 0.653284 3_1:-56729953 None:intergenic
ACCATTGGGACAATCAAGAG+AGG 0.663692 3_1:-56727427 None:intergenic
TGGAAGCATCTCCTCGAACG+AGG 0.669556 3_1:+56730191 Msa0364040:CDS
AAGGAATGAGGATCTGACCT+CGG 0.671701 3_1:-56727318 None:intergenic
GCATGGGAGGATAGATGCTG+AGG 0.673206 3_1:+56730257 Msa0364040:three_prime_UTR
TGACCAACAAGTTCCAGCTG+AGG 0.675734 3_1:-56727789 None:intergenic
TTGAAATTGAAAATTCAAAG+GGG 0.682647 3_1:-56726301 None:intergenic
GTGAATGATATAATATGGGG+GGG 0.684869 3_1:+56730392 Msa0364040:three_prime_UTR
TATCAGGATCCATATTATGG+GGG 0.690554 3_1:+56728631 Msa0364040:CDS
AGAGGATCAAACGAAAATGG+TGG 0.692972 3_1:+56730078 Msa0364040:CDS
AACATGCGACAAGATGCAAG+AGG 0.706089 3_1:+56730060 Msa0364040:CDS
TATCCAACACCACGCCACCA+AGG 0.707510 3_1:-56727366 None:intergenic
TGGTGATTCAGAATCCAATG+AGG 0.715370 3_1:+56727446 Msa0364040:CDS
CCTCGAACGAGGCATCGCAG+AGG 0.718093 3_1:+56730202 Msa0364040:CDS
ATATACTGCCAAGATAACCA+AGG 0.721400 3_1:-56730326 None:intergenic
CCGAAACTGCAAATCAACCG+AGG 0.722272 3_1:+56727301 Msa0364040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTACTAACAATTAAAT+AGG + chr3_1:56727577-56727596 Msa0364040:intron 10.0%
!!! TATAAATGTTTCTAATATAT+TGG + chr3_1:56729292-56729311 Msa0364040:intron 10.0%
!!! TTACATTTTTTTTTTTTTGA+AGG - chr3_1:56729442-56729461 None:intergenic 10.0%
!! ATTGAAATTGAAAATTCAAA+GGG - chr3_1:56726305-56726324 None:intergenic 15.0%
!! AATTGAAATTGAAAATTCAA+AGG - chr3_1:56726306-56726325 None:intergenic 15.0%
!!! TTGTAGGTTTTTTTATTTTT+TGG + chr3_1:56727004-56727023 Msa0364040:intron 15.0%
!!! TGTAGGTTTTTTTATTTTTT+GGG + chr3_1:56727005-56727024 Msa0364040:intron 15.0%
!! AAGTATATAAAAGTTAACAT+GGG + chr3_1:56727093-56727112 Msa0364040:intron 15.0%
!! AAAAAATAACAATAAAGCTT+AGG - chr3_1:56727833-56727852 None:intergenic 15.0%
!!! TTTTTTAGTAATAAGTCATA+AGG - chr3_1:56728188-56728207 None:intergenic 15.0%
!! TTGAAATTGAAAATTCAAAG+GGG - chr3_1:56726304-56726323 None:intergenic 20.0%
!!! TTTTTTTCAATACGAAAAAG+AGG + chr3_1:56726598-56726617 Msa0364040:intron 20.0%
!! AGATTTACAACTCTAATATA+TGG + chr3_1:56727068-56727087 Msa0364040:intron 20.0%
!! CAAGTATATAAAAGTTAACA+TGG + chr3_1:56727092-56727111 Msa0364040:intron 20.0%
!!! ACTATACTTGTAATTTTTGT+AGG + chr3_1:56727254-56727273 Msa0364040:intron 20.0%
!!! CTATACTTGTAATTTTTGTA+GGG + chr3_1:56727255-56727274 Msa0364040:intron 20.0%
!!! ACCAAATACTATTGATTTAA+AGG + chr3_1:56727655-56727674 Msa0364040:intron 20.0%
!!! GTTTTTTTTTTCTTCTTGAT+AGG + chr3_1:56727690-56727709 Msa0364040:intron 20.0%
!!! TCAAATCAGTAATTTTATTC+TGG + chr3_1:56727903-56727922 Msa0364040:intron 20.0%
!!! ATAATGAGAATTTTATTCCT+AGG + chr3_1:56728083-56728102 Msa0364040:intron 20.0%
!!! GAATTTTTAAGAAAAGTGTT+TGG + chr3_1:56728105-56728124 Msa0364040:intron 20.0%
!!! TTATGTTAATTTTTACAACC+TGG + chr3_1:56728218-56728237 Msa0364040:intron 20.0%
!!! TATGTTAATTTTTACAACCT+GGG + chr3_1:56728219-56728238 Msa0364040:intron 20.0%
!! TTAAAAAAAAATCAAGAACG+TGG + chr3_1:56728299-56728318 Msa0364040:intron 20.0%
!! AAATAAAAAAATCAAGAACG+TGG + chr3_1:56728362-56728381 Msa0364040:intron 20.0%
!!! ATTTTTATTCCCATGAAATA+GGG - chr3_1:56728419-56728438 None:intergenic 20.0%
!! ATCAAGAAAATAGAACAAAA+TGG - chr3_1:56728727-56728746 None:intergenic 20.0%
!!! TGTTCTATTTTCTTGATTAA+TGG + chr3_1:56728730-56728749 Msa0364040:intron 20.0%
!! TCTTGATTAATGGTAATATT+TGG + chr3_1:56728740-56728759 Msa0364040:intron 20.0%
!!! GGATATTTGTCTTTTTTATA+TGG + chr3_1:56729125-56729144 Msa0364040:intron 20.0%
!! CTGCTTAAAAAAAAAATCAA+AGG - chr3_1:56729332-56729351 None:intergenic 20.0%
!! CATCTAATTTAATGTTTAGA+TGG + chr3_1:56729507-56729526 Msa0364040:intron 20.0%
!!! TTTACTACATAAACTTTTTG+TGG + chr3_1:56729685-56729704 Msa0364040:intron 20.0%
!!! TTACTACATAAACTTTTTGT+GGG + chr3_1:56729686-56729705 Msa0364040:intron 20.0%
! ATCATAAGACTCAAAAATCT+AGG + chr3_1:56726353-56726372 Msa0364040:five_prime_UTR 25.0%
! TCATAAGACTCAAAAATCTA+GGG + chr3_1:56726354-56726373 Msa0364040:five_prime_UTR 25.0%
!!! TTTTTTGGGAATATAGTTGT+AGG + chr3_1:56727019-56727038 Msa0364040:intron 25.0%
! TTGTAACTCTTGATTGAATA+AGG + chr3_1:56727121-56727140 Msa0364040:intron 25.0%
! TAGGTGAAAAATAAACAGAT+TGG + chr3_1:56727596-56727615 Msa0364040:intron 25.0%
! GCCTTTAAATCAATAGTATT+TGG - chr3_1:56727659-56727678 None:intergenic 25.0%
! TTCTTCTTGATAGGAAATTA+CGG + chr3_1:56727699-56727718 Msa0364040:intron 25.0%
! ATTCGTGCATATAATTTCAA+TGG + chr3_1:56727943-56727962 Msa0364040:intron 25.0%
!! AATTCTCATTATGTTTTCCT+GGG - chr3_1:56728075-56728094 None:intergenic 25.0%
!! AAATTCTCATTATGTTTTCC+TGG - chr3_1:56728076-56728095 None:intergenic 25.0%
!! CACTTTTCTTAAAAATTCCT+AGG - chr3_1:56728103-56728122 None:intergenic 25.0%
!! CATTTTTATTCCCATGAAAT+AGG - chr3_1:56728420-56728439 None:intergenic 25.0%
! ATAAAAATGACGAGAATGTA+AGG + chr3_1:56728431-56728450 Msa0364040:intron 25.0%
! GGAACAAAAATAATATGTCT+AGG - chr3_1:56728484-56728503 None:intergenic 25.0%
! AAAGAATTGGAAGAATACTA+GGG - chr3_1:56728585-56728604 None:intergenic 25.0%
! AAAAGAATTGGAAGAATACT+AGG - chr3_1:56728586-56728605 None:intergenic 25.0%
!! TATGATATTTTCCTTTCCTT+TGG + chr3_1:56729103-56729122 Msa0364040:intron 25.0%
!! ATGATATTTTCCTTTCCTTT+GGG + chr3_1:56729104-56729123 Msa0364040:intron 25.0%
! AAAAAAGACAAATATCCCAA+AGG - chr3_1:56729122-56729141 None:intergenic 25.0%
!!! TGTCTTTTTTATATGGAGAA+AGG + chr3_1:56729132-56729151 Msa0364040:intron 25.0%
! AAAAAAAATCAAAGGCTCTA+TGG - chr3_1:56729324-56729343 None:intergenic 25.0%
!! TTTCTCATTTTACATGAATG+TGG - chr3_1:56729741-56729760 None:intergenic 25.0%
! GTATATCCTAGTGATATATT+TGG + chr3_1:56730288-56730307 Msa0364040:three_prime_UTR 25.0%
! ATGGTGTGAATGATATAATA+TGG + chr3_1:56730387-56730406 Msa0364040:three_prime_UTR 25.0%
! TGGTGTGAATGATATAATAT+GGG + chr3_1:56730388-56730407 Msa0364040:three_prime_UTR 25.0%
! CAAAAATGAGAAAAGATTGA+AGG - chr3_1:56730475-56730494 None:intergenic 25.0%
! TCGTTTTCTGATGCTTATTA+GGG + chr3_1:56726453-56726472 Msa0364040:intron 30.0%
AATCACAGAATTGTTTGACT+CGG - chr3_1:56726526-56726545 None:intergenic 30.0%
CATAAGGCATAACAGAATTT+CGG - chr3_1:56726747-56726766 None:intergenic 30.0%
ACAGAATCACATGAAACATA+AGG - chr3_1:56726763-56726782 None:intergenic 30.0%
!!! ACAACTTTTCAGGTCATATT+TGG - chr3_1:56726790-56726809 None:intergenic 30.0%
AAATATGACCTGAAAAGTTG+TGG + chr3_1:56726789-56726808 Msa0364040:intron 30.0%
TACAACTATAACCAAGTGAT+TGG - chr3_1:56726989-56727008 None:intergenic 30.0%
AATCACTTGGTTATAGTTGT+AGG + chr3_1:56726988-56727007 Msa0364040:intron 30.0%
! CCAGTTTTCTTTTAGCATAA+GGG + chr3_1:56727214-56727233 Msa0364040:intron 30.0%
TAACAATAAAGCTTAGGCAA+AGG - chr3_1:56727827-56727846 None:intergenic 30.0%
CTTAACAACTTGAAAGCAAT+TGG - chr3_1:56727863-56727882 None:intergenic 30.0%
! GGTTGTCAATTTTTATTCCT+AGG + chr3_1:56728126-56728145 Msa0364040:intron 30.0%
! ACTTCTTTGAAAAGAATCCT+AGG - chr3_1:56728146-56728165 None:intergenic 30.0%
! TAGGATTCTTTTCAAAGAAG+TGG + chr3_1:56728145-56728164 Msa0364040:intron 30.0%
! AGGATTCTTTTCAAAGAAGT+GGG + chr3_1:56728146-56728165 Msa0364040:intron 30.0%
! AATTTTACTATTGTGTTCCC+AGG - chr3_1:56728239-56728258 None:intergenic 30.0%
TGGGAACACAATAGTAAAAT+TGG + chr3_1:56728238-56728257 Msa0364040:intron 30.0%
! ATGAGTTTTTATCAAGAACG+TGG + chr3_1:56728267-56728286 Msa0364040:intron 30.0%
AAAAAAATCAAGAACGTGGT+TGG + chr3_1:56728303-56728322 Msa0364040:intron 30.0%
AATACCTATGTTTGGTAGAA+AGG - chr3_1:56728505-56728524 None:intergenic 30.0%
GAAAGAAGAATACCTATGTT+TGG - chr3_1:56728513-56728532 None:intergenic 30.0%
GAGATAAAAAACACATTCCT+GGG - chr3_1:56728548-56728567 None:intergenic 30.0%
AGAGATAAAAAACACATTCC+TGG - chr3_1:56728549-56728568 None:intergenic 30.0%
AAGAATTGGAAGAATACTAG+GGG - chr3_1:56728584-56728603 None:intergenic 30.0%
CTTATCAGGATCCATATTAT+GGG + chr3_1:56728629-56728648 Msa0364040:CDS 30.0%
TTATCAGGATCCATATTATG+GGG + chr3_1:56728630-56728649 Msa0364040:CDS 30.0%
AGATTAATGTCACATACCAA+CGG - chr3_1:56728682-56728701 None:intergenic 30.0%
! TTAATCTGTTACTTGCTTCA+AGG + chr3_1:56728695-56728714 Msa0364040:intron 30.0%
GAAGCTCATAAAATCTAGAA+AGG + chr3_1:56729052-56729071 Msa0364040:intron 30.0%
GTCGTATGAAATTGTGAAAA+AGG - chr3_1:56729168-56729187 None:intergenic 30.0%
TCCATATAAAGACTAAGCAA+CGG - chr3_1:56729190-56729209 None:intergenic 30.0%
CCATTAATATGCTGTATTGA+CGG + chr3_1:56729367-56729386 Msa0364040:intron 30.0%
! TTGTTGCTTGTTTCAAAAGT+GGG - chr3_1:56729487-56729506 None:intergenic 30.0%
TGCACAAATGTCAAGAAAAA+TGG + chr3_1:56729635-56729654 Msa0364040:intron 30.0%
TGTCTAGATTCATGAAGATA+TGG - chr3_1:56729868-56729887 None:intergenic 30.0%
CATTCACCAAATATATCACT+AGG - chr3_1:56730297-56730316 None:intergenic 30.0%
GGTGTGAATGATATAATATG+GGG + chr3_1:56730389-56730408 Msa0364040:three_prime_UTR 30.0%
GTGTGAATGATATAATATGG+GGG + chr3_1:56730390-56730409 Msa0364040:three_prime_UTR 30.0%
TGTGAATGATATAATATGGG+GGG + chr3_1:56730391-56730410 Msa0364040:three_prime_UTR 30.0%
!! CATTTTGTACAGAGTTTTAG+TGG + chr3_1:56730495-56730514 Msa0364040:three_prime_UTR 30.0%
GTTTGTTCTGTAAACTTAAC+TGG + chr3_1:56730608-56730627 Msa0364040:three_prime_UTR 30.0%
!!! TTCTTTTTTCCTTCTTCCTC+AGG + chr3_1:56726377-56726396 Msa0364040:five_prime_UTR 35.0%
!! GTCGTTTTCTGATGCTTATT+AGG + chr3_1:56726452-56726471 Msa0364040:intron 35.0%
TCTGATGCTTATTAGGGATT+AGG + chr3_1:56726459-56726478 Msa0364040:intron 35.0%
CTGATGCTTATTAGGGATTA+GGG + chr3_1:56726460-56726479 Msa0364040:intron 35.0%
GTTCTGTGTGAATTCTTGTT+TGG + chr3_1:56726555-56726574 Msa0364040:intron 35.0%
CTAGGTTTGATTGTGAATGT+AGG + chr3_1:56726634-56726653 Msa0364040:intron 35.0%
TGATTGTGAATGTAGGTGAA+AGG + chr3_1:56726641-56726660 Msa0364040:intron 35.0%
TAGGTGAAAGGTGGAAAATT+GGG + chr3_1:56726653-56726672 Msa0364040:intron 35.0%
TCTGTTAAACAGAGCTTCAT+AGG + chr3_1:56726702-56726721 Msa0364040:intron 35.0%
! TGTTACAGTTTTTGTTCCTC+CGG + chr3_1:56726817-56726836 Msa0364040:intron 35.0%
TTCCACCTAGAAATCAAACT+CGG + chr3_1:56726914-56726933 Msa0364040:intron 35.0%
CTTCCAAACAATTCGTCTTT+AGG + chr3_1:56726940-56726959 Msa0364040:intron 35.0%
CTACCTAAAGACGAATTGTT+TGG - chr3_1:56726946-56726965 None:intergenic 35.0%
GATCATAATCAATTTCACCG+TGG + chr3_1:56727164-56727183 Msa0364040:intron 35.0%
! GCCAGTTTTCTTTTAGCATA+AGG + chr3_1:56727213-56727232 Msa0364040:intron 35.0%
CCCTTATGCTAAAAGAAAAC+TGG - chr3_1:56727217-56727236 None:intergenic 35.0%
! GTAATTTTTGTAGGGATCTG+AGG + chr3_1:56727263-56727282 Msa0364040:intron 35.0%
ACAATCAAGAGAGGATGAAT+TGG - chr3_1:56727421-56727440 None:intergenic 35.0%
TTGGATTCTGAATCACCATT+GGG - chr3_1:56727444-56727463 None:intergenic 35.0%
ATTGGATTCTGAATCACCAT+TGG - chr3_1:56727445-56727464 None:intergenic 35.0%
TTCCTCATTCATCTCACTAT+TGG - chr3_1:56727487-56727506 None:intergenic 35.0%
! TCTAAAGCACCTGATTGATT+GGG - chr3_1:56727546-56727565 None:intergenic 35.0%
!! TTCTAAAGCACCTGATTGAT+TGG - chr3_1:56727547-56727566 None:intergenic 35.0%
! ATTCTTTTCAAAGAAGTGGG+TGG + chr3_1:56728149-56728168 Msa0364040:intron 35.0%
! GTTTTTATCAAGAACGTGGT+TGG + chr3_1:56728271-56728290 Msa0364040:intron 35.0%
GATGGGAAAATTATATTCCC+AGG - chr3_1:56728397-56728416 None:intergenic 35.0%
! ATTTTCCCATCCCTATTTCA+TGG + chr3_1:56728406-56728425 Msa0364040:intron 35.0%
! TTTTCCCATCCCTATTTCAT+GGG + chr3_1:56728407-56728426 Msa0364040:intron 35.0%
TATTCCCATGAAATAGGGAT+GGG - chr3_1:56728414-56728433 None:intergenic 35.0%
TTATTCCCATGAAATAGGGA+TGG - chr3_1:56728415-56728434 None:intergenic 35.0%
ATGTAAGGTAAGTAGATTCC+TGG + chr3_1:56728446-56728465 Msa0364040:intron 35.0%
TGTAAGGTAAGTAGATTCCT+GGG + chr3_1:56728447-56728466 Msa0364040:intron 35.0%
TCTAGGAATAATTAATGCCC+AGG - chr3_1:56728467-56728486 None:intergenic 35.0%
TGTTCCTTTCTACCAAACAT+AGG + chr3_1:56728498-56728517 Msa0364040:intron 35.0%
AGAATTGGAAGAATACTAGG+GGG - chr3_1:56728583-56728602 None:intergenic 35.0%
! TCTTCCAATTCTTTTGATGC+AGG + chr3_1:56728591-56728610 Msa0364040:intron 35.0%
ATGTGCTACAAATCCTTATC+AGG + chr3_1:56728615-56728634 Msa0364040:CDS 35.0%
CCATAATATGGATCCTGATA+AGG - chr3_1:56728631-56728650 None:intergenic 35.0%
CCTTATCAGGATCCATATTA+TGG + chr3_1:56728628-56728647 Msa0364040:CDS 35.0%
TATCAGGATCCATATTATGG+GGG + chr3_1:56728631-56728650 Msa0364040:CDS 35.0%
! TAGGGATATCCTCCTTTTAT+AGG + chr3_1:56728806-56728825 Msa0364040:intron 35.0%
TGTTTAGCGTTCACATAAAC+AGG - chr3_1:56728978-56728997 None:intergenic 35.0%
AACAATACCAAGGAATTCTG+AGG + chr3_1:56728994-56729013 Msa0364040:intron 35.0%
AGACAAATATCCCAAAGGAA+AGG - chr3_1:56729117-56729136 None:intergenic 35.0%
! ACCGTTGCTTAGTCTTTATA+TGG + chr3_1:56729186-56729205 Msa0364040:intron 35.0%
CCGTCAATACAGCATATTAA+TGG - chr3_1:56729370-56729389 None:intergenic 35.0%
! GTTGTTGCTTGTTTCAAAAG+TGG - chr3_1:56729488-56729507 None:intergenic 35.0%
TATCCTTGTCTGCAAGAATT+AGG + chr3_1:56729564-56729583 Msa0364040:intron 35.0%
AAAAATAAGCTCTCAGATGC+AGG + chr3_1:56729592-56729611 Msa0364040:intron 35.0%
GGACTCATGCAAGTAAAAAA+TGG - chr3_1:56729793-56729812 None:intergenic 35.0%
GTCTCACTTGAAACATATTC+TGG - chr3_1:56729814-56729833 None:intergenic 35.0%
CGATTTGCAAAGAAAACTGA+TGG + chr3_1:56729925-56729944 Msa0364040:CDS 35.0%
TCGCAATCAATTAGTTCATC+TGG + chr3_1:56729991-56730010 Msa0364040:CDS 35.0%
TCCTACCATAACAACAACAA+TGG + chr3_1:56730105-56730124 Msa0364040:CDS 35.0%
! ACCATTGTTGTTGTTATGGT+AGG - chr3_1:56730109-56730128 None:intergenic 35.0%
! GCATACCATTGTTGTTGTTA+TGG - chr3_1:56730113-56730132 None:intergenic 35.0%
ACAATGGTATGCAATCTTCA+AGG + chr3_1:56730121-56730140 Msa0364040:CDS 35.0%
! TATGCAATCTTCAAGGTATC+AGG + chr3_1:56730128-56730147 Msa0364040:CDS 35.0%
! ATGCAATCTTCAAGGTATCA+GGG + chr3_1:56730129-56730148 Msa0364040:CDS 35.0%
ATATACTGCCAAGATAACCA+AGG - chr3_1:56730329-56730348 None:intergenic 35.0%
TATCTTGGCAGTATATATGC+CGG + chr3_1:56730333-56730352 Msa0364040:three_prime_UTR 35.0%
! AAAAGCCAAGAATGATTTGC+CGG - chr3_1:56730355-56730374 None:intergenic 35.0%
! GGCTTTTGTTCTTCTGTTAA+TGG + chr3_1:56730368-56730387 Msa0364040:three_prime_UTR 35.0%
GTGAATGATATAATATGGGG+GGG + chr3_1:56730392-56730411 Msa0364040:three_prime_UTR 35.0%
! TACCAAACTCTCTTGTTTCT+TGG + chr3_1:56730585-56730604 Msa0364040:three_prime_UTR 35.0%
! ACCAAACTCTCTTGTTTCTT+GGG + chr3_1:56730586-56730605 Msa0364040:three_prime_UTR 35.0%
GTTCTGTAAACTTAACTGGT+TGG + chr3_1:56730612-56730631 Msa0364040:three_prime_UTR 35.0%
AAAGAGAGAGAGAAAGAGAG+AGG + chr3_1:56726261-56726280 Msa0364040:five_prime_UTR 40.0%
AAGAGAGAGAGAAAGAGAGA+GGG + chr3_1:56726262-56726281 Msa0364040:five_prime_UTR 40.0%
! AGGGTTTTCGTGCTGAATTT+TGG + chr3_1:56726479-56726498 Msa0364040:intron 40.0%
! GGGTTTTCGTGCTGAATTTT+GGG + chr3_1:56726480-56726499 Msa0364040:intron 40.0%
!! AGAATTGTTTGACTCGGACT+CGG - chr3_1:56726520-56726539 None:intergenic 40.0%
! AGAGGATTTTTCTCTGAGCT+AGG + chr3_1:56726616-56726635 Msa0364040:intron 40.0%
TTGTGAATGTAGGTGAAAGG+TGG + chr3_1:56726644-56726663 Msa0364040:intron 40.0%
GTAGGTGAAAGGTGGAAAAT+TGG + chr3_1:56726652-56726671 Msa0364040:intron 40.0%
AGAGCTTCATAGGTAGTGTA+CGG + chr3_1:56726712-56726731 Msa0364040:intron 40.0%
! ACACTATGCCACAACTTTTC+AGG - chr3_1:56726800-56726819 None:intergenic 40.0%
! TTTTTGTTCCTCCGGTTCTT+AGG + chr3_1:56726825-56726844 Msa0364040:intron 40.0%
GCTGATAGGTAAGTAAAGTC+TGG + chr3_1:56726874-56726893 Msa0364040:intron 40.0%
TCCACCTAGAAATCAAACTC+GGG + chr3_1:56726915-56726934 Msa0364040:intron 40.0%
! AGAACCCGAGTTTGATTTCT+AGG - chr3_1:56726922-56726941 None:intergenic 40.0%
CCACAAAATGCAGTAATCCA+CGG - chr3_1:56727184-56727203 None:intergenic 40.0%
! TGATTTGCAGTTTCGGACTT+GGG - chr3_1:56727297-56727316 None:intergenic 40.0%
!! TTGATTTGCAGTTTCGGACT+TGG - chr3_1:56727298-56727317 None:intergenic 40.0%
AGGTTCAGAATAAACACCAC+CGG - chr3_1:56727349-56727368 None:intergenic 40.0%
GTGGTGTTTATTCTGAACCT+TGG + chr3_1:56727349-56727368 Msa0364040:CDS 40.0%
GTGTTTATTCTGAACCTTGG+TGG + chr3_1:56727352-56727371 Msa0364040:CDS 40.0%
TGGTGATTCAGAATCCAATG+AGG + chr3_1:56727446-56727465 Msa0364040:CDS 40.0%
GATTCAGAATCCAATGAGGA+AGG + chr3_1:56727450-56727469 Msa0364040:CDS 40.0%
TCTCACTATTGGACAAAGAC+TGG - chr3_1:56727476-56727495 None:intergenic 40.0%
GTCCAATAGTGAGATGAATG+AGG + chr3_1:56727482-56727501 Msa0364040:CDS 40.0%
GGAAATTACGGACAAGAACA+AGG + chr3_1:56727711-56727730 Msa0364040:intron 40.0%
AGCTTGTAGTTGCATGCATT+TGG + chr3_1:56727983-56728002 Msa0364040:intron 40.0%
! AGGGAGTAATTTTTGCATCC+GGG - chr3_1:56728040-56728059 None:intergenic 40.0%
! CAGGGAGTAATTTTTGCATC+CGG - chr3_1:56728041-56728060 None:intergenic 40.0%
TCCTGGGAAAGTTAATTCCA+GGG - chr3_1:56728059-56728078 None:intergenic 40.0%
TTCCTGGGAAAGTTAATTCC+AGG - chr3_1:56728060-56728079 None:intergenic 40.0%
AAACACATTCCTGGGAATAG+AGG - chr3_1:56728540-56728559 None:intergenic 40.0%
GAATTGGAAGAATACTAGGG+GGG - chr3_1:56728582-56728601 None:intergenic 40.0%
CATGCCTGCATCAAAAGAAT+TGG - chr3_1:56728598-56728617 None:intergenic 40.0%
GTGAACGCTAAACAATACCA+AGG + chr3_1:56728984-56729003 Msa0364040:intron 40.0%
TATATGCGCTGTTGTCTGTA+AGG + chr3_1:56729263-56729282 Msa0364040:intron 40.0%
TGTTTAGATGGATCTGCTGT+TGG + chr3_1:56729519-56729538 Msa0364040:intron 40.0%
ATACACTGGCAAAATTGGAG+TGG - chr3_1:56729714-56729733 None:intergenic 40.0%
GCTACATACACTGGCAAAAT+TGG - chr3_1:56729719-56729738 None:intergenic 40.0%
ATGAATGTGGCTACATACAC+TGG - chr3_1:56729728-56729747 None:intergenic 40.0%
!! ACATCAGCATGCTTTGAGAA+GGG + chr3_1:56729885-56729904 Msa0364040:CDS 40.0%
TTTCTTTGCAAATCGTCCTC+CGG - chr3_1:56729920-56729939 None:intergenic 40.0%
! TGCAAAGAAAACTGATGGTG+AGG + chr3_1:56729930-56729949 Msa0364040:CDS 40.0%
GCAAGAGGATCAAACGAAAA+TGG + chr3_1:56730075-56730094 Msa0364040:CDS 40.0%
AGAGGATCAAACGAAAATGG+TGG + chr3_1:56730078-56730097 Msa0364040:CDS 40.0%
GTACCTTACCTTGGTTATCT+TGG + chr3_1:56730318-56730337 Msa0364040:three_prime_UTR 40.0%
ATATGCCGGCAAATCATTCT+TGG + chr3_1:56730347-56730366 Msa0364040:three_prime_UTR 40.0%
GTAGTCAACTTCAGCTGATA+TGG + chr3_1:56730517-56730536 Msa0364040:three_prime_UTR 40.0%
TCAACTTCAGCTGATATGGA+TGG + chr3_1:56730521-56730540 Msa0364040:three_prime_UTR 40.0%
ACCCAAGAAACAAGAGAGTT+TGG - chr3_1:56730590-56730609 None:intergenic 40.0%
ATGCACTTACCTGAGGAAGA+AGG - chr3_1:56726389-56726408 None:intergenic 45.0%
! ACCCGAGTTTGATTTCTAGG+TGG - chr3_1:56726919-56726938 None:intergenic 45.0%
ACCAAGTGATTGGACTCAAG+TGG - chr3_1:56726979-56726998 None:intergenic 45.0%
!! CCGTGGATTACTGCATTTTG+TGG + chr3_1:56727181-56727200 Msa0364040:intron 45.0%
! CTGCATTTTGTGGCTGTGAT+TGG + chr3_1:56727191-56727210 Msa0364040:intron 45.0%
!! CCTCGGTTGATTTGCAGTTT+CGG - chr3_1:56727304-56727323 None:intergenic 45.0%
AAGGAATGAGGATCTGACCT+CGG - chr3_1:56727321-56727340 None:intergenic 45.0%
GGTTCAGAATAAACACCACC+GGG - chr3_1:56727348-56727367 None:intergenic 45.0%
TCCTCTCTTGATTGTCCCAA+TGG + chr3_1:56727426-56727445 Msa0364040:CDS 45.0%
ACCATTGGGACAATCAAGAG+AGG - chr3_1:56727430-56727449 None:intergenic 45.0%
! GGAAGATGATGATGCTGCTA+AGG + chr3_1:56727503-56727522 Msa0364040:CDS 45.0%
GTAGTTGCATGCATTTGGAC+TGG + chr3_1:56727988-56728007 Msa0364040:intron 45.0%
! TTGCATGCATTTGGACTGGA+TGG + chr3_1:56727992-56728011 Msa0364040:intron 45.0%
! TGCATGCATTTGGACTGGAT+GGG + chr3_1:56727993-56728012 Msa0364040:intron 45.0%
CGGATGCAAAAATTACTCCC+TGG + chr3_1:56728039-56728058 Msa0364040:intron 45.0%
TCCCTGGAATTAACTTTCCC+AGG + chr3_1:56728055-56728074 Msa0364040:intron 45.0%
CATTCCTGGGAATAGAGGTT+GGG - chr3_1:56728535-56728554 None:intergenic 45.0%
ACATTCCTGGGAATAGAGGT+TGG - chr3_1:56728536-56728555 None:intergenic 45.0%
GCAATCATGCCCCCATAATA+TGG - chr3_1:56728643-56728662 None:intergenic 45.0%
TAATGTCACATACCAACGGC+TGG - chr3_1:56728678-56728697 None:intergenic 45.0%
! TGAGGCACTCCTATAAAAGG+AGG - chr3_1:56728818-56728837 None:intergenic 45.0%
! GCATGAGGCACTCCTATAAA+AGG - chr3_1:56728821-56728840 None:intergenic 45.0%
GTGCTAAAGCAGAGCTTGAA+AGG + chr3_1:56729030-56729049 Msa0364040:intron 45.0%
TTAGATGGATCTGCTGTTGG+AGG + chr3_1:56729522-56729541 Msa0364040:intron 45.0%
CAGCCTAATTCTTGCAGACA+AGG - chr3_1:56729570-56729589 None:intergenic 45.0%
!! GACATCAGCATGCTTTGAGA+AGG + chr3_1:56729884-56729903 Msa0364040:CDS 45.0%
ATTGATTGCGACGACAAGAC+TGG - chr3_1:56729982-56730001 None:intergenic 45.0%
! ACTTTTGCCTTCAGACTCTG+CGG + chr3_1:56730020-56730039 Msa0364040:CDS 45.0%
CTTGCATCTTGTCGCATGTT+GGG - chr3_1:56730060-56730079 None:intergenic 45.0%
TCTTGCATCTTGTCGCATGT+TGG - chr3_1:56730061-56730080 None:intergenic 45.0%
AACATGCGACAAGATGCAAG+AGG + chr3_1:56730060-56730079 Msa0364040:CDS 45.0%
GGATCAAACGAAAATGGTGG+TGG + chr3_1:56730081-56730100 Msa0364040:CDS 45.0%
! AAGGTATCAGGGTGAAAGAG+TGG + chr3_1:56730140-56730159 Msa0364040:CDS 45.0%
AGGGTGAAAGAGTGGAAGAA+GGG + chr3_1:56730148-56730167 Msa0364040:CDS 45.0%
GGTGAATGAGTACCTTACCT+TGG + chr3_1:56730309-56730328 Msa0364040:three_prime_UTR 45.0%
CTGCCAAGATAACCAAGGTA+AGG - chr3_1:56730324-56730343 None:intergenic 45.0%
TAATATGGGGGGGAGAAGAA+TGG + chr3_1:56730402-56730421 Msa0364040:three_prime_UTR 45.0%
CTTCAGCTGATATGGATGGA+TGG + chr3_1:56730525-56730544 Msa0364040:three_prime_UTR 45.0%
!! TAGTAAAAAAAAAAAAAATA+TGG - chr3_1:56728785-56728804 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTACTATT+AGG + chr3_1:56728787-56728806 Msa0364040:intron 5.0%
!!! TTTTTTTTTTTTTACTATTA+GGG + chr3_1:56728788-56728807 Msa0364040:intron 5.0%
TCGAAGCATGCACTTACCTG+AGG - chr3_1:56726396-56726415 None:intergenic 50.0%
TTCCTCCGGTTCTTAGGAGA+AGG + chr3_1:56726831-56726850 Msa0364040:intron 50.0%
TCCTCCGGTTCTTAGGAGAA+GGG + chr3_1:56726832-56726851 Msa0364040:intron 50.0%
TCAGCCGAACTCCAGATTGA+GGG - chr3_1:56726859-56726878 None:intergenic 50.0%
ATCAGCCGAACTCCAGATTG+AGG - chr3_1:56726860-56726879 None:intergenic 50.0%
! CAATCTGGAGTTCGGCTGAT+AGG + chr3_1:56726860-56726879 Msa0364040:intron 50.0%
GCCACTTGAGTCCAATCACT+TGG + chr3_1:56726975-56726994 Msa0364040:intron 50.0%
CCGAAACTGCAAATCAACCG+AGG + chr3_1:56727301-56727320 Msa0364040:CDS 50.0%
GATCCTCATTCCTTTCAGCC+CGG + chr3_1:56727327-56727346 Msa0364040:CDS 50.0%
ATAAACACCACCGGGCTGAA+AGG - chr3_1:56727340-56727359 None:intergenic 50.0%
!! TATTCTGAACCTTGGTGGCG+TGG + chr3_1:56727357-56727376 Msa0364040:CDS 50.0%
CCAGACATTGTTTGCGCTAC+AGG - chr3_1:56727396-56727415 None:intergenic 50.0%
CCTGTAGCGCAAACAATGTC+TGG + chr3_1:56727393-56727412 Msa0364040:CDS 50.0%
!! CAAAGACTGGCCTTCCTCAT+TGG - chr3_1:56727463-56727482 None:intergenic 50.0%
ACTCCTCAGCTGGAACTTGT+TGG + chr3_1:56727786-56727805 Msa0364040:CDS 50.0%
TGACCAACAAGTTCCAGCTG+AGG - chr3_1:56727792-56727811 None:intergenic 50.0%
! AGAACGTGGCACTCTTTTCC+TGG + chr3_1:56728376-56728395 Msa0364040:intron 50.0%
! GAACGTGGCACTCTTTTCCT+GGG + chr3_1:56728377-56728396 Msa0364040:intron 50.0%
CTTTCCCAACCTCTATTCCC+AGG + chr3_1:56728528-56728547 Msa0364040:intron 50.0%
AATGCCTTTGCCCCTTGAGA+TGG + chr3_1:56728844-56728863 Msa0364040:intron 50.0%
GTCTTCGCCTCAGAATTCCT+TGG - chr3_1:56729004-56729023 None:intergenic 50.0%
GTTGGAGGCTCAAGGAAGTT+AGG + chr3_1:56729537-56729556 Msa0364040:intron 50.0%
AAGCTCTCAGATGCAGGTAG+TGG + chr3_1:56729598-56729617 Msa0364040:intron 50.0%
!! CATGCTTTGAGAAGGGCAAG+AGG + chr3_1:56729892-56729911 Msa0364040:CDS 50.0%
! GAAAACTGATGGTGAGGCCT+CGG + chr3_1:56729936-56729955 Msa0364040:CDS 50.0%
! AAAACTGATGGTGAGGCCTC+GGG + chr3_1:56729937-56729956 Msa0364040:CDS 50.0%
AGAGCCATTATCCTTTCCCG+AGG - chr3_1:56729956-56729975 None:intergenic 50.0%
! TCGGGAAAGGATAATGGCTC+TGG + chr3_1:56729955-56729974 Msa0364040:CDS 50.0%
TCGCATGTTGGGAGAATTCC+AGG - chr3_1:56730049-56730068 None:intergenic 50.0%
CAGGGTGAAAGAGTGGAAGA+AGG + chr3_1:56730147-56730166 Msa0364040:CDS 50.0%
GGGTGAAAGAGTGGAAGAAG+GGG + chr3_1:56730149-56730168 Msa0364040:CDS 50.0%
TGGAAGAAGGGGACTGTTCA+GGG + chr3_1:56730160-56730179 Msa0364040:CDS 50.0%
TCTATCCTCCCATGCAGGAA+GGG - chr3_1:56730252-56730271 None:intergenic 50.0%
ATCTATCCTCCCATGCAGGA+AGG - chr3_1:56730253-56730272 None:intergenic 50.0%
GGGGGAGAAGAATGGTGATT+GGG + chr3_1:56730410-56730429 Msa0364040:three_prime_UTR 50.0%
GGGGAGAAGAATGGTGATTG+GGG + chr3_1:56730411-56730430 Msa0364040:three_prime_UTR 50.0%
GCTGATATGGATGGATGGTC+AGG + chr3_1:56730530-56730549 Msa0364040:three_prime_UTR 50.0%
CCTCCGGTTCTTAGGAGAAG+GGG + chr3_1:56726833-56726852 Msa0364040:intron 55.0%
TATCCAACACCACGCCACCA+AGG - chr3_1:56727369-56727388 None:intergenic 55.0%
CCTGATTGATTGGGAGCAGC+AGG - chr3_1:56727537-56727556 None:intergenic 55.0%
CCTGCTGCTCCCAATCAATC+AGG + chr3_1:56727534-56727553 Msa0364040:CDS 55.0%
! TTGGACTGGATGGGACTCCT+AGG + chr3_1:56728002-56728021 Msa0364040:intron 55.0%
! TGGACTGGATGGGACTCCTA+GGG + chr3_1:56728003-56728022 Msa0364040:intron 55.0%
!! CCTAGGGGGTGTTTGTTTCC+CGG + chr3_1:56728019-56728038 Msa0364040:intron 55.0%
AGCTTATCCTCACCAGCCGT+TGG + chr3_1:56728663-56728682 Msa0364040:CDS 55.0%
TCACATACCAACGGCTGGTG+AGG - chr3_1:56728673-56728692 None:intergenic 55.0%
!! GGCAAAGGCATTCTGGCATG+AGG - chr3_1:56728836-56728855 None:intergenic 55.0%
!! CTCAAGGGGCAAAGGCATTC+TGG - chr3_1:56728843-56728862 None:intergenic 55.0%
TGAGCCATCTCAAGGGGCAA+AGG - chr3_1:56728851-56728870 None:intergenic 55.0%
GATCTGCTGTTGGAGGCTCA+AGG + chr3_1:56729529-56729548 Msa0364040:intron 55.0%
! TTGAGAAGGGCAAGAGGCAC+CGG + chr3_1:56729898-56729917 Msa0364040:CDS 55.0%
GAGGCCTCGGGAAAGGATAA+TGG + chr3_1:56729949-56729968 Msa0364040:CDS 55.0%
CAGGTTTCCGCAGAGTCTGA+AGG - chr3_1:56730030-56730049 None:intergenic 55.0%
CTTCAGACTCTGCGGAAACC+TGG + chr3_1:56730028-56730047 Msa0364040:CDS 55.0%
GTGGAAGAAGGGGACTGTTC+AGG + chr3_1:56730159-56730178 Msa0364040:CDS 55.0%
!! TGGAAGCATCTCCTCGAACG+AGG + chr3_1:56730191-56730210 Msa0364040:CDS 55.0%
TATCCTCCCATGCAGGAAGG+GGG - chr3_1:56730250-56730269 None:intergenic 55.0%
CTATCCTCCCATGCAGGAAG+GGG - chr3_1:56730251-56730270 None:intergenic 55.0%
CAGCATCTATCCTCCCATGC+AGG - chr3_1:56730257-56730276 None:intergenic 55.0%
GCATGGGAGGATAGATGCTG+AGG + chr3_1:56730257-56730276 Msa0364040:three_prime_UTR 55.0%
GGGAGGATAGATGCTGAGGT+TGG + chr3_1:56730261-56730280 Msa0364040:three_prime_UTR 55.0%
GGGGGGAGAAGAATGGTGAT+TGG + chr3_1:56730409-56730428 Msa0364040:three_prime_UTR 55.0%
CCCCTTCTCCTAAGAACCGG+AGG - chr3_1:56726836-56726855 None:intergenic 60.0%
GGGCCCCTTCTCCTAAGAAC+CGG - chr3_1:56726839-56726858 None:intergenic 60.0%
AGGAGAAGGGGCCCTCAATC+TGG + chr3_1:56726845-56726864 Msa0364040:intron 60.0%
! GGGGCCCTCAATCTGGAGTT+CGG + chr3_1:56726852-56726871 Msa0364040:intron 60.0%
CCACCGGGCTGAAAGGAATG+AGG - chr3_1:56727333-56727352 None:intergenic 60.0%
CCTCATTCCTTTCAGCCCGG+TGG + chr3_1:56727330-56727349 Msa0364040:CDS 60.0%
!! GAACCTTGGTGGCGTGGTGT+TGG + chr3_1:56727363-56727382 Msa0364040:CDS 60.0%
CCAGCTGAGGAGTCTGTGTG+AGG - chr3_1:56727779-56727798 None:intergenic 60.0%
CCTCACACAGACTCCTCAGC+TGG + chr3_1:56727776-56727795 Msa0364040:CDS 60.0%
GGACTGGATGGGACTCCTAG+GGG + chr3_1:56728004-56728023 Msa0364040:intron 60.0%
GACTGGATGGGACTCCTAGG+GGG + chr3_1:56728005-56728024 Msa0364040:intron 60.0%
CCGGGAAACAAACACCCCCT+AGG - chr3_1:56728022-56728041 None:intergenic 60.0%
! TGATGGTGAGGCCTCGGGAA+AGG + chr3_1:56729942-56729961 Msa0364040:CDS 60.0%
GACTGTTCAGGGCAGCTACG+TGG + chr3_1:56730171-56730190 Msa0364040:CDS 60.0%
TAGAGACCCCCCTTCCTGCA+TGG + chr3_1:56730240-56730259 Msa0364040:exon 60.0%
AGAGACCCCCCTTCCTGCAT+GGG + chr3_1:56730241-56730260 Msa0364040:exon 60.0%
ATCCTCCCATGCAGGAAGGG+GGG - chr3_1:56730249-56730268 None:intergenic 60.0%
!! AGAAGGGCAAGAGGCACCGG+AGG + chr3_1:56729901-56729920 Msa0364040:CDS 65.0%
CCTCTGCGATGCCTCGTTCG+AGG - chr3_1:56730205-56730224 None:intergenic 65.0%
!! CCTCGAACGAGGCATCGCAG+AGG + chr3_1:56730202-56730221 Msa0364040:CDS 65.0%
GACCCCCCTTCCTGCATGGG+AGG + chr3_1:56730244-56730263 Msa0364040:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 56726199 56730716 56726199 ID=Msa0364040;Name=Msa0364040
chr3_1 mRNA 56726199 56730716 56726199 ID=Msa0364040-mRNA-1;Parent=Msa0364040;Name=Msa0364040-mRNA-1;_AED=0.22;_eAED=0.22;_QI=212|0.75|1|1|0.75|0.6|5|474|274
chr3_1 exon 56726199 56726398 56726199 ID=Msa0364040-mRNA-1:exon:10582;Parent=Msa0364040-mRNA-1
chr3_1 exon 56727276 56727555 56727276 ID=Msa0364040-mRNA-1:exon:10583;Parent=Msa0364040-mRNA-1
chr3_1 exon 56727712 56727818 56727712 ID=Msa0364040-mRNA-1:exon:10584;Parent=Msa0364040-mRNA-1
chr3_1 exon 56728613 56728684 56728613 ID=Msa0364040-mRNA-1:exon:10585;Parent=Msa0364040-mRNA-1
chr3_1 exon 56729865 56730716 56729865 ID=Msa0364040-mRNA-1:exon:10586;Parent=Msa0364040-mRNA-1
chr3_1 five_prime_UTR 56726199 56726398 56726199 ID=Msa0364040-mRNA-1:five_prime_utr;Parent=Msa0364040-mRNA-1
chr3_1 five_prime_UTR 56727276 56727287 56727276 ID=Msa0364040-mRNA-1:five_prime_utr;Parent=Msa0364040-mRNA-1
chr3_1 CDS 56727288 56727555 56727288 ID=Msa0364040-mRNA-1:cds;Parent=Msa0364040-mRNA-1
chr3_1 CDS 56727712 56727818 56727712 ID=Msa0364040-mRNA-1:cds;Parent=Msa0364040-mRNA-1
chr3_1 CDS 56728613 56728684 56728613 ID=Msa0364040-mRNA-1:cds;Parent=Msa0364040-mRNA-1
chr3_1 CDS 56729865 56730242 56729865 ID=Msa0364040-mRNA-1:cds;Parent=Msa0364040-mRNA-1
chr3_1 three_prime_UTR 56730243 56730716 56730243 ID=Msa0364040-mRNA-1:three_prime_utr;Parent=Msa0364040-mRNA-1
Gene Sequence

>Msa0364040

ATGCAACCCAAGTCCGAAACTGCAAATCAACCGAGGTCAGATCCTCATTCCTTTCAGCCCGGTGGTGTTTATTCTGAACCTTGGTGGCGTGGTGTTGGATACAATCCTGTAGCGCAAACAATGTCTGGTGCCAATTCATCCTCTCTTGATTGTCCCAATGGTGATTCAGAATCCAATGAGGAAGGCCAGTCTTTGTCCAATAGTGAGATGAATGAGGAAGATGATGATGCTGCTAAGGATTCACAGCCTGCTGCTCCCAATCAATCAGGAAATTACGGACAAGAACAAGGAATGCAGAATACTGCATCATCTGCAGTTATTCGCGAAGAATGCCTCACACAGACTCCTCAGCTGGAACTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAGGATCCATATTATGGGGGCATGATTGCAGCTTATCCTCACCAGCCGTTGCCATATCTTCATGAATCTAGACATCAGCATGCTTTGAGAAGGGCAAGAGGCACCGGAGGACGATTTGCAAAGAAAACTGATGGTGAGGCCTCGGGAAAGGATAATGGCTCTGGTCCAGTCTTGTCGTCGCAATCAATTAGTTCATCTGGTTCAGAACTTTTGCCTTCAGACTCTGCGGAAACCTGGAATTCTCCCAACATGCGACAAGATGCAAGAGGATCAAACGAAAATGGTGGTGGCTCCTACCATAACAACAACAATGGTATGCAATCTTCAAGGTATCAGGGTGAAAGAGTGGAAGAAGGGGACTGTTCAGGGCAGCTACGTGGAAGCATCTCCTCGAACGAGGCATCGCAGAGGCGTCTTGCTATTCAGTAG
Protein sequence

>Msa0364040

MQPKSETANQPRSDPHSFQPGGVYSEPWWRGVGYNPVAQTMSGANSSSLDCPNGDSESNEEGQSLSNSEMNEEDDDAAKDSQPAAPNQSGNYGQEQGMQNTASSAVIREECLTQTPQLELVGHSIACATNPYQDPYYGGMIAAYPHQPLPYLHESRHQHALRRARGTGGRFAKKTDGEASGKDNGSGPVLSSQSISSSGSELLPSDSAETWNSPNMRQDARGSNENGGGSYHNNNNGMQSSRYQGERVEEGDCSGQLRGSISSNEASQRRLAIQ*