Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364270 | XP_024634637.2 | 85.017 | 287 | 21 | 1 | 1 | 265 | 1 | 287 | 1.19e-174 | 493 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364270 | G8A2Z5 | 67.845 | 283 | 58 | 3 | 1 | 260 | 1 | 273 | 8.35e-126 | 368 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0364270 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364270 | MtrunA17_Chr3g0103181 | 65.957 | 282 | 70 | 2 | 1 | 260 | 1 | 278 | 1.39e-126 | 360 |
| Msa0364270 | MtrunA17_Chr3g0103171 | 63.462 | 260 | 71 | 2 | 25 | 260 | 5 | 264 | 4.23e-110 | 318 |
| Msa0364270 | MtrunA17_Chr3g0103191 | 65.476 | 252 | 62 | 4 | 1 | 228 | 1 | 251 | 2.19e-108 | 313 |
| Msa0364270 | MtrunA17_Chr3g0103201 | 70.256 | 195 | 57 | 1 | 67 | 260 | 25 | 219 | 3.53e-93 | 273 |
| Msa0364270 | MtrunA17_Chr3g0103161 | 94.488 | 127 | 7 | 0 | 139 | 265 | 1 | 127 | 1.32e-85 | 251 |
| Msa0364270 | MtrunA17_Chr3g0103151 | 76.582 | 158 | 15 | 1 | 1 | 136 | 1 | 158 | 2.35e-81 | 241 |
| Msa0364270 | MtrunA17_Chr8g0390841 | 30.573 | 314 | 146 | 9 | 4 | 260 | 31 | 329 | 1.77e-33 | 127 |
| Msa0364270 | MtrunA17_Chr8g0390841 | 48.438 | 64 | 32 | 1 | 197 | 260 | 454 | 516 | 7.93e-13 | 67.8 |
| Msa0364270 | MtrunA17_Chr1g0163071 | 30.584 | 291 | 139 | 10 | 26 | 260 | 2 | 285 | 1.98e-33 | 123 |
| Msa0364270 | MtrunA17_Chr1g0208771 | 29.236 | 301 | 138 | 11 | 21 | 264 | 10 | 292 | 2.87e-30 | 117 |
| Msa0364270 | MtrunA17_Chr1g0208771 | 37.288 | 118 | 69 | 3 | 152 | 265 | 345 | 461 | 7.10e-14 | 70.9 |
| Msa0364270 | MtrunA17_Chr7g0233561 | 27.575 | 301 | 164 | 10 | 9 | 260 | 15 | 310 | 1.78e-24 | 100 |
| Msa0364270 | MtrunA17_Chr1g0163251 | 27.368 | 285 | 162 | 7 | 12 | 263 | 9 | 281 | 2.77e-23 | 97.8 |
| Msa0364270 | MtrunA17_Chr1g0163131 | 25.497 | 302 | 174 | 8 | 2 | 258 | 8 | 303 | 8.67e-23 | 95.1 |
| Msa0364270 | MtrunA17_Chr3g0131891 | 26.481 | 287 | 175 | 8 | 9 | 260 | 16 | 301 | 1.75e-21 | 92.0 |
| Msa0364270 | MtrunA17_Chr4g0067431 | 27.273 | 297 | 151 | 12 | 10 | 251 | 13 | 299 | 1.15e-19 | 86.7 |
| Msa0364270 | MtrunA17_Chr1g0163181 | 25.503 | 298 | 156 | 10 | 14 | 261 | 11 | 292 | 1.46e-18 | 84.7 |
| Msa0364270 | MtrunA17_Chr1g0163261 | 24.221 | 289 | 175 | 7 | 9 | 263 | 6 | 284 | 2.42e-17 | 80.1 |
| Msa0364270 | MtrunA17_Chr1g0163201 | 24.014 | 279 | 162 | 7 | 25 | 263 | 18 | 286 | 4.83e-16 | 77.0 |
| Msa0364270 | MtrunA17_Chr7g0233571 | 37.255 | 102 | 40 | 2 | 9 | 86 | 7 | 108 | 1.79e-13 | 67.8 |
| Msa0364270 | MtrunA17_Chr1g0163231 | 23.390 | 295 | 166 | 11 | 9 | 263 | 6 | 280 | 6.20e-13 | 67.4 |
| Msa0364270 | MtrunA17_Chr1g0163221 | 24.746 | 295 | 164 | 11 | 10 | 260 | 9 | 289 | 1.00e-12 | 67.4 |
| Msa0364270 | MtrunA17_Chr5g0419201 | 28.931 | 159 | 71 | 6 | 12 | 136 | 16 | 166 | 1.29e-12 | 65.1 |
| Msa0364270 | MtrunA17_Chr3g0077411 | 23.051 | 295 | 162 | 8 | 1 | 260 | 251 | 515 | 2.41e-11 | 63.5 |
| Msa0364270 | MtrunA17_Chr1g0163061 | 35.294 | 102 | 41 | 3 | 10 | 86 | 13 | 114 | 7.99e-11 | 60.8 |
| Msa0364270 | MtrunA17_Chr3g0077451 | 24.900 | 249 | 155 | 9 | 24 | 263 | 10 | 235 | 8.52e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCGTGTTCCAACTTTAAA+TGG | 0.142271 | 3_1:+57035977 | Msa0364270:intron |
| ACATTTCTAGCCTCGCAATA+AGG | 0.295736 | 3_1:-57036070 | None:intergenic |
| TTTCTAGTACTCTTCTGATT+TGG | 0.316148 | 3_1:-57034696 | None:intergenic |
| AGTCTATTTCTACTGCATTC+TGG | 0.324981 | 3_1:-57034590 | None:intergenic |
| AGAGTCCTGATGGTACTAAA+TGG | 0.342374 | 3_1:+57034423 | Msa0364270:CDS |
| CAAGTCTTTGAAGATTAGAT+TGG | 0.343046 | 3_1:-57034129 | None:intergenic |
| GATACATTAACTGTCACTTT+TGG | 0.350344 | 3_1:-57036209 | None:intergenic |
| AATGATAAACAAGAAAGATT+TGG | 0.351442 | 3_1:+57036168 | Msa0364270:CDS |
| CTACTCATTTAGCAGAAAAT+CGG | 0.355466 | 3_1:+57035851 | Msa0364270:CDS |
| ATCAGAAGAGTACTAGAAAA+AGG | 0.373090 | 3_1:+57034700 | Msa0364270:CDS |
| TGGTGAGATTTGGTTTGAAA+AGG | 0.373936 | 3_1:+57034469 | Msa0364270:CDS |
| TGTCTCCTTGTAAACTCATT+TGG | 0.382989 | 3_1:-57034368 | None:intergenic |
| CATTTCTAGCCTCGCAATAA+GGG | 0.387999 | 3_1:-57036069 | None:intergenic |
| TCAATAACCCCATTTAAAGT+TGG | 0.400471 | 3_1:-57035986 | None:intergenic |
| TCCTGAGCTCTAGCTCCCTT+TGG | 0.408256 | 3_1:-57035775 | None:intergenic |
| AAAGAACTACATCATGGAAT+TGG | 0.425827 | 3_1:+57035752 | Msa0364270:CDS |
| AGCGTGTTCCAACTTTAAAT+GGG | 0.429597 | 3_1:+57035978 | Msa0364270:intron |
| GTACTAAATGGAAAGTGTAT+TGG | 0.434686 | 3_1:+57034435 | Msa0364270:CDS |
| CGACCACATAAGAAAGTAAG+AGG | 0.449011 | 3_1:+57034741 | Msa0364270:CDS |
| GTCTTTGAAGATTAGATTGG+AGG | 0.462905 | 3_1:-57034126 | None:intergenic |
| AAGTTTGATGTAGTAATACT+TGG | 0.466742 | 3_1:+57034567 | Msa0364270:CDS |
| TCCACTTTCTCTTGCAAACA+AGG | 0.469074 | 3_1:-57036116 | None:intergenic |
| TCTTGCAAACAAGGACCAAC+CGG | 0.476293 | 3_1:-57036107 | None:intergenic |
| ACTTTCCATTTAGTACCATC+AGG | 0.482876 | 3_1:-57034428 | None:intergenic |
| AATATGTGATGCTGCAGATT+GGG | 0.486365 | 3_1:+57036020 | Msa0364270:CDS |
| ATACCTCTTACTTTCTTATG+TGG | 0.489376 | 3_1:-57034744 | None:intergenic |
| AATGTTCGCCGCCTCTCGGC+CGG | 0.489655 | 3_1:+57036088 | Msa0364270:CDS |
| GGTGAGATTTGGTTTGAAAA+GGG | 0.495938 | 3_1:+57034470 | Msa0364270:CDS |
| TCCTTGTTTGCAAGAGAAAG+TGG | 0.500035 | 3_1:+57036115 | Msa0364270:CDS |
| CTTACTTTCTTATGTGGTCG+AGG | 0.501623 | 3_1:-57034738 | None:intergenic |
| TACTCATTTAGCAGAAAATC+GGG | 0.503743 | 3_1:+57035852 | Msa0364270:CDS |
| TCAAAGACACAAACATCTCC+TGG | 0.512013 | 3_1:-57036145 | None:intergenic |
| AAATATGTGATGCTGCAGAT+TGG | 0.515076 | 3_1:+57036019 | Msa0364270:CDS |
| TAGAAATGTTCGCCGCCTCT+CGG | 0.526048 | 3_1:+57036084 | Msa0364270:CDS |
| ACATCATGGAATTGGCCAAA+GGG | 0.541191 | 3_1:+57035760 | Msa0364270:CDS |
| AAGTATTACTACATCAAACT+TGG | 0.549129 | 3_1:-57034565 | None:intergenic |
| GCCAAAGGGAGCTAGAGCTC+AGG | 0.549833 | 3_1:+57035774 | Msa0364270:CDS |
| TTCGCCGCCTCTCGGCCGGT+TGG | 0.551560 | 3_1:+57036092 | Msa0364270:CDS |
| AAATACCAAATGAGTTTACA+AGG | 0.560882 | 3_1:+57034363 | Msa0364270:CDS |
| ATACTCCATCACCCATGGCT+AGG | 0.561903 | 3_1:+57034065 | None:intergenic |
| TGGTCATACTGATGATGAAT+CGG | 0.562626 | 3_1:+57034653 | Msa0364270:CDS |
| GGTAGCATTTCTCCTAGCCA+TGG | 0.566519 | 3_1:-57034077 | None:intergenic |
| TGCAGATTGGGAAAAGATCA+TGG | 0.571416 | 3_1:+57036032 | Msa0364270:CDS |
| CTGGTGAAAGAACTACATCA+TGG | 0.579498 | 3_1:+57035746 | Msa0364270:CDS |
| AGGACCAACCGGCCGAGAGG+CGG | 0.587468 | 3_1:-57036096 | None:intergenic |
| TCAGGACTCTTGATCAACAC+TGG | 0.588376 | 3_1:-57034410 | None:intergenic |
| GCAGCTGAGGTTATGAAGAC+TGG | 0.589100 | 3_1:+57035727 | Msa0364270:intron |
| AGAGAAAGTGGACTCCAACC+AGG | 0.596756 | 3_1:+57036127 | Msa0364270:CDS |
| AGACACAAACATCTCCTGGT+TGG | 0.603659 | 3_1:-57036141 | None:intergenic |
| GTGTTGATCAAGAGTCCTGA+TGG | 0.607925 | 3_1:+57034413 | Msa0364270:CDS |
| TACATCATGGAATTGGCCAA+AGG | 0.610272 | 3_1:+57035759 | Msa0364270:CDS |
| GTAGCATTTCTCCTAGCCAT+GGG | 0.612967 | 3_1:-57034076 | None:intergenic |
| GAAATTGCTCCCTTATTGCG+AGG | 0.617158 | 3_1:+57036060 | Msa0364270:CDS |
| GCGTGTTCCAACTTTAAATG+GGG | 0.619238 | 3_1:+57035979 | Msa0364270:intron |
| ACAAGGACCAACCGGCCGAG+AGG | 0.636650 | 3_1:-57036099 | None:intergenic |
| GATGATGAGAATGACAATGT+TGG | 0.639579 | 3_1:+57034633 | Msa0364270:CDS |
| AATGAGTTTACAAGGAGACA+TGG | 0.642216 | 3_1:+57034371 | Msa0364270:CDS |
| TCATTTAGCAGAAAATCGGG+TGG | 0.719217 | 3_1:+57035855 | Msa0364270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATAAGTTTTTATTTATAGA+AGG | + | chr3_1:57034282-57034301 | Msa0364270:intron | 15.0% |
| !! | AACATAATAAAATACAAAGA+GGG | - | chr3_1:57035227-57035246 | None:intergenic | 15.0% |
| !! | TAACATAATAAAATACAAAG+AGG | - | chr3_1:57035228-57035247 | None:intergenic | 15.0% |
| !!! | TGTATTTTATTATGTTACTT+TGG | + | chr3_1:57035231-57035250 | Msa0364270:intron | 15.0% |
| !!! | GTATTTTATTATGTTACTTT+GGG | + | chr3_1:57035232-57035251 | Msa0364270:intron | 15.0% |
| !!! | TATTTTATTATGTTACTTTG+GGG | + | chr3_1:57035233-57035252 | Msa0364270:intron | 15.0% |
| !!! | CTTTTCAATATCATTAATAA+AGG | + | chr3_1:57035373-57035392 | Msa0364270:intron | 15.0% |
| !! | AAAACGACTTATAATAAAAT+AGG | + | chr3_1:57035562-57035581 | Msa0364270:intron | 15.0% |
| !! | AAACGACTTATAATAAAATA+GGG | + | chr3_1:57035563-57035582 | Msa0364270:intron | 15.0% |
| !!! | CATAAGTTTTTATTTATAGA+AGG | + | chr3_1:57034282-57034301 | Msa0364270:intron | 15.0% |
| !! | AACATAATAAAATACAAAGA+GGG | - | chr3_1:57035227-57035246 | None:intergenic | 15.0% |
| !! | TAACATAATAAAATACAAAG+AGG | - | chr3_1:57035228-57035247 | None:intergenic | 15.0% |
| !!! | TGTATTTTATTATGTTACTT+TGG | + | chr3_1:57035231-57035250 | Msa0364270:intron | 15.0% |
| !!! | GTATTTTATTATGTTACTTT+GGG | + | chr3_1:57035232-57035251 | Msa0364270:intron | 15.0% |
| !!! | TATTTTATTATGTTACTTTG+GGG | + | chr3_1:57035233-57035252 | Msa0364270:intron | 15.0% |
| !!! | CTTTTCAATATCATTAATAA+AGG | + | chr3_1:57035373-57035392 | Msa0364270:intron | 15.0% |
| !! | AAAACGACTTATAATAAAAT+AGG | + | chr3_1:57035562-57035581 | Msa0364270:intron | 15.0% |
| !! | AAACGACTTATAATAAAATA+GGG | + | chr3_1:57035563-57035582 | Msa0364270:intron | 15.0% |
| !! | TAACTCTAAATAGTAGAAAT+CGG | - | chr3_1:57034170-57034189 | None:intergenic | 20.0% |
| !! | AGAGAATAATACCTAATAAA+GGG | - | chr3_1:57035332-57035351 | None:intergenic | 20.0% |
| !!! | TCCTTTTGACAATTTTTTTT+TGG | + | chr3_1:57035470-57035489 | Msa0364270:intron | 20.0% |
| !! | ACCAAAAAAAAATTGTCAAA+AGG | - | chr3_1:57035474-57035493 | None:intergenic | 20.0% |
| !! | TATATGAGAATTGTGAAAAA+AGG | - | chr3_1:57035829-57035848 | None:intergenic | 20.0% |
| !! | AATGATAAACAAGAAAGATT+TGG | + | chr3_1:57036168-57036187 | Msa0364270:CDS | 20.0% |
| !! | TAACTCTAAATAGTAGAAAT+CGG | - | chr3_1:57034170-57034189 | None:intergenic | 20.0% |
| !! | AGAGAATAATACCTAATAAA+GGG | - | chr3_1:57035332-57035351 | None:intergenic | 20.0% |
| !!! | TCCTTTTGACAATTTTTTTT+TGG | + | chr3_1:57035470-57035489 | Msa0364270:intron | 20.0% |
| !! | ACCAAAAAAAAATTGTCAAA+AGG | - | chr3_1:57035474-57035493 | None:intergenic | 20.0% |
| !! | TATATGAGAATTGTGAAAAA+AGG | - | chr3_1:57035829-57035848 | None:intergenic | 20.0% |
| !! | AATGATAAACAAGAAAGATT+TGG | + | chr3_1:57036168-57036187 | Msa0364270:CDS | 20.0% |
| ! | ATGATCTTGAAAAAATGGAT+GGG | - | chr3_1:57034106-57034125 | None:intergenic | 25.0% |
| ! | AAATACCAAATGAGTTTACA+AGG | + | chr3_1:57034363-57034382 | Msa0364270:CDS | 25.0% |
| ! | GTGTATTGGAAAAAAATCAA+TGG | + | chr3_1:57034449-57034468 | Msa0364270:CDS | 25.0% |
| ! | AAAAAATCAATGGTGAGATT+TGG | + | chr3_1:57034459-57034478 | Msa0364270:CDS | 25.0% |
| ! | TTTACTGAAAATTACTCTCT+TGG | + | chr3_1:57034504-57034523 | Msa0364270:intron | 25.0% |
| ! | AAGTATTACTACATCAAACT+TGG | - | chr3_1:57034568-57034587 | None:intergenic | 25.0% |
| ! | AAGTTTGATGTAGTAATACT+TGG | + | chr3_1:57034567-57034586 | Msa0364270:CDS | 25.0% |
| ! | AAAATGAAATCCAAAGACTT+TGG | - | chr3_1:57034935-57034954 | None:intergenic | 25.0% |
| ! | ATTAGTCACATTTAACAACA+TGG | + | chr3_1:57035060-57035079 | Msa0364270:intron | 25.0% |
| !!! | TTTTAGGTGAAGCAAATTAA+TGG | - | chr3_1:57035152-57035171 | None:intergenic | 25.0% |
| !!! | TTAATTTGCTTCACCTAAAA+AGG | + | chr3_1:57035152-57035171 | Msa0364270:intron | 25.0% |
| !!! | AATGCTTGTTTTACCTTTTT+AGG | - | chr3_1:57035168-57035187 | None:intergenic | 25.0% |
| ! | GAGAGAATAATACCTAATAA+AGG | - | chr3_1:57035333-57035352 | None:intergenic | 25.0% |
| !!! | AGTCGTTTTGACAAATTTTT+TGG | - | chr3_1:57035551-57035570 | None:intergenic | 25.0% |
| ! | ATGATCTTGAAAAAATGGAT+GGG | - | chr3_1:57034106-57034125 | None:intergenic | 25.0% |
| ! | AAATACCAAATGAGTTTACA+AGG | + | chr3_1:57034363-57034382 | Msa0364270:CDS | 25.0% |
| ! | GTGTATTGGAAAAAAATCAA+TGG | + | chr3_1:57034449-57034468 | Msa0364270:CDS | 25.0% |
| ! | AAAAAATCAATGGTGAGATT+TGG | + | chr3_1:57034459-57034478 | Msa0364270:CDS | 25.0% |
| ! | TTTACTGAAAATTACTCTCT+TGG | + | chr3_1:57034504-57034523 | Msa0364270:intron | 25.0% |
| ! | AAGTATTACTACATCAAACT+TGG | - | chr3_1:57034568-57034587 | None:intergenic | 25.0% |
| ! | AAGTTTGATGTAGTAATACT+TGG | + | chr3_1:57034567-57034586 | Msa0364270:CDS | 25.0% |
| ! | AAAATGAAATCCAAAGACTT+TGG | - | chr3_1:57034935-57034954 | None:intergenic | 25.0% |
| ! | ATTAGTCACATTTAACAACA+TGG | + | chr3_1:57035060-57035079 | Msa0364270:intron | 25.0% |
| !!! | TTTTAGGTGAAGCAAATTAA+TGG | - | chr3_1:57035152-57035171 | None:intergenic | 25.0% |
| !!! | TTAATTTGCTTCACCTAAAA+AGG | + | chr3_1:57035152-57035171 | Msa0364270:intron | 25.0% |
| !!! | AATGCTTGTTTTACCTTTTT+AGG | - | chr3_1:57035168-57035187 | None:intergenic | 25.0% |
| ! | GAGAGAATAATACCTAATAA+AGG | - | chr3_1:57035333-57035352 | None:intergenic | 25.0% |
| !!! | AGTCGTTTTGACAAATTTTT+TGG | - | chr3_1:57035551-57035570 | None:intergenic | 25.0% |
| GATGATCTTGAAAAAATGGA+TGG | - | chr3_1:57034107-57034126 | None:intergenic | 30.0% | |
| ! | CAAGTCTTTGAAGATTAGAT+TGG | - | chr3_1:57034132-57034151 | None:intergenic | 30.0% |
| AAAAATTTAAGTGCCCAAGT+TGG | - | chr3_1:57034338-57034357 | None:intergenic | 30.0% | |
| ! | GTACTAAATGGAAAGTGTAT+TGG | + | chr3_1:57034435-57034454 | Msa0364270:CDS | 30.0% |
| !! | TTGGTGGTGTTTGAATATAA+AGG | + | chr3_1:57034537-57034556 | Msa0364270:intron | 30.0% |
| ! | TTTCTAGTACTCTTCTGATT+TGG | - | chr3_1:57034699-57034718 | None:intergenic | 30.0% |
| !! | ATCAGAAGAGTACTAGAAAA+AGG | + | chr3_1:57034700-57034719 | Msa0364270:CDS | 30.0% |
| ATACCTCTTACTTTCTTATG+TGG | - | chr3_1:57034747-57034766 | None:intergenic | 30.0% | |
| ! | AAGAAAGTAAGAGGTATGTA+TGG | + | chr3_1:57034750-57034769 | Msa0364270:intron | 30.0% |
| TATAGTATGTCACACTCTAT+TGG | - | chr3_1:57034995-57035014 | None:intergenic | 30.0% | |
| GTCATCTTTGGTTAGAAATA+AGG | - | chr3_1:57035031-57035050 | None:intergenic | 30.0% | |
| AAATGTGACTAATCAAGCTA+AGG | - | chr3_1:57035053-57035072 | None:intergenic | 30.0% | |
| AGAAAAAGCCAACATGTTAT+TGG | + | chr3_1:57035105-57035124 | Msa0364270:intron | 30.0% | |
| AAAACAAGCATTCAATCTCA+TGG | + | chr3_1:57035176-57035195 | Msa0364270:intron | 30.0% | |
| TTCCTATCATACCCTTTATT+AGG | + | chr3_1:57035318-57035337 | Msa0364270:intron | 30.0% | |
| ! | TACCTAATAAAGGGTATGAT+AGG | - | chr3_1:57035323-57035342 | None:intergenic | 30.0% |
| AAAGAACTACATCATGGAAT+TGG | + | chr3_1:57035752-57035771 | Msa0364270:CDS | 30.0% | |
| ! | GATTTTCTGCTAAATGAGTA+GGG | - | chr3_1:57035852-57035871 | None:intergenic | 30.0% |
| CTACTCATTTAGCAGAAAAT+CGG | + | chr3_1:57035851-57035870 | Msa0364270:CDS | 30.0% | |
| TACTCATTTAGCAGAAAATC+GGG | + | chr3_1:57035852-57035871 | Msa0364270:CDS | 30.0% | |
| ! | TCAATAACCCCATTTAAAGT+TGG | - | chr3_1:57035989-57036008 | None:intergenic | 30.0% |
| GATGATCTTGAAAAAATGGA+TGG | - | chr3_1:57034107-57034126 | None:intergenic | 30.0% | |
| ! | CAAGTCTTTGAAGATTAGAT+TGG | - | chr3_1:57034132-57034151 | None:intergenic | 30.0% |
| AAAAATTTAAGTGCCCAAGT+TGG | - | chr3_1:57034338-57034357 | None:intergenic | 30.0% | |
| ! | GTACTAAATGGAAAGTGTAT+TGG | + | chr3_1:57034435-57034454 | Msa0364270:CDS | 30.0% |
| !! | TTGGTGGTGTTTGAATATAA+AGG | + | chr3_1:57034537-57034556 | Msa0364270:intron | 30.0% |
| ! | TTTCTAGTACTCTTCTGATT+TGG | - | chr3_1:57034699-57034718 | None:intergenic | 30.0% |
| !! | ATCAGAAGAGTACTAGAAAA+AGG | + | chr3_1:57034700-57034719 | Msa0364270:CDS | 30.0% |
| ATACCTCTTACTTTCTTATG+TGG | - | chr3_1:57034747-57034766 | None:intergenic | 30.0% | |
| ! | AAGAAAGTAAGAGGTATGTA+TGG | + | chr3_1:57034750-57034769 | Msa0364270:intron | 30.0% |
| TATAGTATGTCACACTCTAT+TGG | - | chr3_1:57034995-57035014 | None:intergenic | 30.0% | |
| GTCATCTTTGGTTAGAAATA+AGG | - | chr3_1:57035031-57035050 | None:intergenic | 30.0% | |
| AAATGTGACTAATCAAGCTA+AGG | - | chr3_1:57035053-57035072 | None:intergenic | 30.0% | |
| AGAAAAAGCCAACATGTTAT+TGG | + | chr3_1:57035105-57035124 | Msa0364270:intron | 30.0% | |
| AAAACAAGCATTCAATCTCA+TGG | + | chr3_1:57035176-57035195 | Msa0364270:intron | 30.0% | |
| TTCCTATCATACCCTTTATT+AGG | + | chr3_1:57035318-57035337 | Msa0364270:intron | 30.0% | |
| ! | TACCTAATAAAGGGTATGAT+AGG | - | chr3_1:57035323-57035342 | None:intergenic | 30.0% |
| AAAGAACTACATCATGGAAT+TGG | + | chr3_1:57035752-57035771 | Msa0364270:CDS | 30.0% | |
| ! | GATTTTCTGCTAAATGAGTA+GGG | - | chr3_1:57035852-57035871 | None:intergenic | 30.0% |
| CTACTCATTTAGCAGAAAAT+CGG | + | chr3_1:57035851-57035870 | Msa0364270:CDS | 30.0% | |
| TACTCATTTAGCAGAAAATC+GGG | + | chr3_1:57035852-57035871 | Msa0364270:CDS | 30.0% | |
| ! | TCAATAACCCCATTTAAAGT+TGG | - | chr3_1:57035989-57036008 | None:intergenic | 30.0% |
| CTTGAAAAAATGGATGGGAA+AGG | - | chr3_1:57034101-57034120 | None:intergenic | 35.0% | |
| GGAGGATGATCTTGAAAAAA+TGG | - | chr3_1:57034111-57034130 | None:intergenic | 35.0% | |
| ! | GTCTTTGAAGATTAGATTGG+AGG | - | chr3_1:57034129-57034148 | None:intergenic | 35.0% |
| GAATACTAATTTGACACCGT+TGG | + | chr3_1:57034304-57034323 | Msa0364270:intron | 35.0% | |
| TGTCTCCTTGTAAACTCATT+TGG | - | chr3_1:57034371-57034390 | None:intergenic | 35.0% | |
| AATGAGTTTACAAGGAGACA+TGG | + | chr3_1:57034371-57034390 | Msa0364270:CDS | 35.0% | |
| ACTTTCCATTTAGTACCATC+AGG | - | chr3_1:57034431-57034450 | None:intergenic | 35.0% | |
| !! | TGGTGAGATTTGGTTTGAAA+AGG | + | chr3_1:57034469-57034488 | Msa0364270:CDS | 35.0% |
| !! | GGTGAGATTTGGTTTGAAAA+GGG | + | chr3_1:57034470-57034489 | Msa0364270:CDS | 35.0% |
| !! | AGATTTGGTTTGAAAAGGGT+TGG | + | chr3_1:57034474-57034493 | Msa0364270:intron | 35.0% |
| GAAAATTACTCTCTTGGACA+TGG | + | chr3_1:57034510-57034529 | Msa0364270:intron | 35.0% | |
| !! | AGTCTATTTCTACTGCATTC+TGG | - | chr3_1:57034593-57034612 | None:intergenic | 35.0% |
| GATGATGAGAATGACAATGT+TGG | + | chr3_1:57034633-57034652 | Msa0364270:CDS | 35.0% | |
| ! | TGGTCATACTGATGATGAAT+CGG | + | chr3_1:57034653-57034672 | Msa0364270:CDS | 35.0% |
| ! | CGGTTGAGATTTTAGATGAA+TGG | + | chr3_1:57034673-57034692 | Msa0364270:CDS | 35.0% |
| ATGTCTATGACCAAAGTCTT+TGG | + | chr3_1:57034922-57034941 | Msa0364270:intron | 35.0% | |
| AATCAAGCTAAGGTCATCTT+TGG | - | chr3_1:57035043-57035062 | None:intergenic | 35.0% | |
| ! | CGATTTTCTGCTAAATGAGT+AGG | - | chr3_1:57035853-57035872 | None:intergenic | 35.0% |
| AGCGTGTTCCAACTTTAAAT+GGG | + | chr3_1:57035978-57035997 | Msa0364270:intron | 35.0% | |
| AAATATGTGATGCTGCAGAT+TGG | + | chr3_1:57036019-57036038 | Msa0364270:CDS | 35.0% | |
| AATATGTGATGCTGCAGATT+GGG | + | chr3_1:57036020-57036039 | Msa0364270:CDS | 35.0% | |
| CTTGAAAAAATGGATGGGAA+AGG | - | chr3_1:57034101-57034120 | None:intergenic | 35.0% | |
| GGAGGATGATCTTGAAAAAA+TGG | - | chr3_1:57034111-57034130 | None:intergenic | 35.0% | |
| ! | GTCTTTGAAGATTAGATTGG+AGG | - | chr3_1:57034129-57034148 | None:intergenic | 35.0% |
| GAATACTAATTTGACACCGT+TGG | + | chr3_1:57034304-57034323 | Msa0364270:intron | 35.0% | |
| TGTCTCCTTGTAAACTCATT+TGG | - | chr3_1:57034371-57034390 | None:intergenic | 35.0% | |
| AATGAGTTTACAAGGAGACA+TGG | + | chr3_1:57034371-57034390 | Msa0364270:CDS | 35.0% | |
| ACTTTCCATTTAGTACCATC+AGG | - | chr3_1:57034431-57034450 | None:intergenic | 35.0% | |
| !! | TGGTGAGATTTGGTTTGAAA+AGG | + | chr3_1:57034469-57034488 | Msa0364270:CDS | 35.0% |
| !! | GGTGAGATTTGGTTTGAAAA+GGG | + | chr3_1:57034470-57034489 | Msa0364270:CDS | 35.0% |
| !! | AGATTTGGTTTGAAAAGGGT+TGG | + | chr3_1:57034474-57034493 | Msa0364270:intron | 35.0% |
| GAAAATTACTCTCTTGGACA+TGG | + | chr3_1:57034510-57034529 | Msa0364270:intron | 35.0% | |
| !! | AGTCTATTTCTACTGCATTC+TGG | - | chr3_1:57034593-57034612 | None:intergenic | 35.0% |
| GATGATGAGAATGACAATGT+TGG | + | chr3_1:57034633-57034652 | Msa0364270:CDS | 35.0% | |
| ! | TGGTCATACTGATGATGAAT+CGG | + | chr3_1:57034653-57034672 | Msa0364270:CDS | 35.0% |
| ! | CGGTTGAGATTTTAGATGAA+TGG | + | chr3_1:57034673-57034692 | Msa0364270:CDS | 35.0% |
| ATGTCTATGACCAAAGTCTT+TGG | + | chr3_1:57034922-57034941 | Msa0364270:intron | 35.0% | |
| AATCAAGCTAAGGTCATCTT+TGG | - | chr3_1:57035043-57035062 | None:intergenic | 35.0% | |
| ! | CGATTTTCTGCTAAATGAGT+AGG | - | chr3_1:57035853-57035872 | None:intergenic | 35.0% |
| AGCGTGTTCCAACTTTAAAT+GGG | + | chr3_1:57035978-57035997 | Msa0364270:intron | 35.0% | |
| AAATATGTGATGCTGCAGAT+TGG | + | chr3_1:57036019-57036038 | Msa0364270:CDS | 35.0% | |
| AATATGTGATGCTGCAGATT+GGG | + | chr3_1:57036020-57036039 | Msa0364270:CDS | 35.0% | |
| AGAGTCCTGATGGTACTAAA+TGG | + | chr3_1:57034423-57034442 | Msa0364270:CDS | 40.0% | |
| CTTACTTTCTTATGTGGTCG+AGG | - | chr3_1:57034741-57034760 | None:intergenic | 40.0% | |
| CGACCACATAAGAAAGTAAG+AGG | + | chr3_1:57034741-57034760 | Msa0364270:CDS | 40.0% | |
| GAGGTATGTATGGATGAGTT+AGG | + | chr3_1:57034760-57034779 | Msa0364270:intron | 40.0% | |
| ATGTATGGATGAGTTAGGCT+TGG | + | chr3_1:57034765-57034784 | Msa0364270:intron | 40.0% | |
| GTAGGATGCCAATAACATGT+TGG | - | chr3_1:57035116-57035135 | None:intergenic | 40.0% | |
| ACATGTTATTGGCATCCTAC+TGG | + | chr3_1:57035116-57035135 | Msa0364270:intron | 40.0% | |
| ! | TCATGATGCTTGACGTTTTC+AGG | - | chr3_1:57035621-57035640 | None:intergenic | 40.0% |
| CTCAGCTGCATATATTTGTG+TGG | - | chr3_1:57035716-57035735 | None:intergenic | 40.0% | |
| CACACAAATATATGCAGCTG+AGG | + | chr3_1:57035714-57035733 | Msa0364270:intron | 40.0% | |
| CTGGTGAAAGAACTACATCA+TGG | + | chr3_1:57035746-57035765 | Msa0364270:CDS | 40.0% | |
| TACATCATGGAATTGGCCAA+AGG | + | chr3_1:57035759-57035778 | Msa0364270:CDS | 40.0% | |
| ACATCATGGAATTGGCCAAA+GGG | + | chr3_1:57035760-57035779 | Msa0364270:CDS | 40.0% | |
| TCATTTAGCAGAAAATCGGG+TGG | + | chr3_1:57035855-57035874 | Msa0364270:CDS | 40.0% | |
| CAGCGTGTTCCAACTTTAAA+TGG | + | chr3_1:57035977-57035996 | Msa0364270:intron | 40.0% | |
| GCGTGTTCCAACTTTAAATG+GGG | + | chr3_1:57035979-57035998 | Msa0364270:intron | 40.0% | |
| TGCAGATTGGGAAAAGATCA+TGG | + | chr3_1:57036032-57036051 | Msa0364270:CDS | 40.0% | |
| !! | CATTTCTAGCCTCGCAATAA+GGG | - | chr3_1:57036072-57036091 | None:intergenic | 40.0% |
| !! | ACATTTCTAGCCTCGCAATA+AGG | - | chr3_1:57036073-57036092 | None:intergenic | 40.0% |
| ! | TCCTTGTTTGCAAGAGAAAG+TGG | + | chr3_1:57036115-57036134 | Msa0364270:CDS | 40.0% |
| TCCACTTTCTCTTGCAAACA+AGG | - | chr3_1:57036119-57036138 | None:intergenic | 40.0% | |
| TCAAAGACACAAACATCTCC+TGG | - | chr3_1:57036148-57036167 | None:intergenic | 40.0% | |
| AGAGTCCTGATGGTACTAAA+TGG | + | chr3_1:57034423-57034442 | Msa0364270:CDS | 40.0% | |
| CTTACTTTCTTATGTGGTCG+AGG | - | chr3_1:57034741-57034760 | None:intergenic | 40.0% | |
| CGACCACATAAGAAAGTAAG+AGG | + | chr3_1:57034741-57034760 | Msa0364270:CDS | 40.0% | |
| GAGGTATGTATGGATGAGTT+AGG | + | chr3_1:57034760-57034779 | Msa0364270:intron | 40.0% | |
| ATGTATGGATGAGTTAGGCT+TGG | + | chr3_1:57034765-57034784 | Msa0364270:intron | 40.0% | |
| GTAGGATGCCAATAACATGT+TGG | - | chr3_1:57035116-57035135 | None:intergenic | 40.0% | |
| ACATGTTATTGGCATCCTAC+TGG | + | chr3_1:57035116-57035135 | Msa0364270:intron | 40.0% | |
| ! | TCATGATGCTTGACGTTTTC+AGG | - | chr3_1:57035621-57035640 | None:intergenic | 40.0% |
| CTCAGCTGCATATATTTGTG+TGG | - | chr3_1:57035716-57035735 | None:intergenic | 40.0% | |
| CACACAAATATATGCAGCTG+AGG | + | chr3_1:57035714-57035733 | Msa0364270:intron | 40.0% | |
| CTGGTGAAAGAACTACATCA+TGG | + | chr3_1:57035746-57035765 | Msa0364270:CDS | 40.0% | |
| TACATCATGGAATTGGCCAA+AGG | + | chr3_1:57035759-57035778 | Msa0364270:CDS | 40.0% | |
| ACATCATGGAATTGGCCAAA+GGG | + | chr3_1:57035760-57035779 | Msa0364270:CDS | 40.0% | |
| TCATTTAGCAGAAAATCGGG+TGG | + | chr3_1:57035855-57035874 | Msa0364270:CDS | 40.0% | |
| CAGCGTGTTCCAACTTTAAA+TGG | + | chr3_1:57035977-57035996 | Msa0364270:intron | 40.0% | |
| GCGTGTTCCAACTTTAAATG+GGG | + | chr3_1:57035979-57035998 | Msa0364270:intron | 40.0% | |
| TGCAGATTGGGAAAAGATCA+TGG | + | chr3_1:57036032-57036051 | Msa0364270:CDS | 40.0% | |
| !! | CATTTCTAGCCTCGCAATAA+GGG | - | chr3_1:57036072-57036091 | None:intergenic | 40.0% |
| !! | ACATTTCTAGCCTCGCAATA+AGG | - | chr3_1:57036073-57036092 | None:intergenic | 40.0% |
| ! | TCCTTGTTTGCAAGAGAAAG+TGG | + | chr3_1:57036115-57036134 | Msa0364270:CDS | 40.0% |
| TCCACTTTCTCTTGCAAACA+AGG | - | chr3_1:57036119-57036138 | None:intergenic | 40.0% | |
| TCAAAGACACAAACATCTCC+TGG | - | chr3_1:57036148-57036167 | None:intergenic | 40.0% | |
| !! | CAAGTTGGTCAGTAAGCCAA+CGG | - | chr3_1:57034323-57034342 | None:intergenic | 45.0% |
| ! | GTTGGCTTACTGACCAACTT+GGG | + | chr3_1:57034322-57034341 | Msa0364270:intron | 45.0% |
| TCAGGACTCTTGATCAACAC+TGG | - | chr3_1:57034413-57034432 | None:intergenic | 45.0% | |
| ! | GTGTTGATCAAGAGTCCTGA+TGG | + | chr3_1:57034413-57034432 | Msa0364270:CDS | 45.0% |
| ! | ATGGATGAGTTAGGCTTGGT+CGG | + | chr3_1:57034769-57034788 | Msa0364270:intron | 45.0% |
| GAAATTGCTCCCTTATTGCG+AGG | + | chr3_1:57036060-57036079 | Msa0364270:CDS | 45.0% | |
| TCTTGCAAACAAGGACCAAC+CGG | - | chr3_1:57036110-57036129 | None:intergenic | 45.0% | |
| AGACACAAACATCTCCTGGT+TGG | - | chr3_1:57036144-57036163 | None:intergenic | 45.0% | |
| !! | CAAGTTGGTCAGTAAGCCAA+CGG | - | chr3_1:57034323-57034342 | None:intergenic | 45.0% |
| ! | GTTGGCTTACTGACCAACTT+GGG | + | chr3_1:57034322-57034341 | Msa0364270:intron | 45.0% |
| TCAGGACTCTTGATCAACAC+TGG | - | chr3_1:57034413-57034432 | None:intergenic | 45.0% | |
| ! | GTGTTGATCAAGAGTCCTGA+TGG | + | chr3_1:57034413-57034432 | Msa0364270:CDS | 45.0% |
| ! | ATGGATGAGTTAGGCTTGGT+CGG | + | chr3_1:57034769-57034788 | Msa0364270:intron | 45.0% |
| GAAATTGCTCCCTTATTGCG+AGG | + | chr3_1:57036060-57036079 | Msa0364270:CDS | 45.0% | |
| TCTTGCAAACAAGGACCAAC+CGG | - | chr3_1:57036110-57036129 | None:intergenic | 45.0% | |
| AGACACAAACATCTCCTGGT+TGG | - | chr3_1:57036144-57036163 | None:intergenic | 45.0% | |
| !! | CGTTGGCTTACTGACCAACT+TGG | + | chr3_1:57034321-57034340 | Msa0364270:intron | 50.0% |
| CTCTCTTGGACATGGCTGTT+TGG | + | chr3_1:57034518-57034537 | Msa0364270:intron | 50.0% | |
| TCTTGGACATGGCTGTTTGG+TGG | + | chr3_1:57034521-57034540 | Msa0364270:intron | 50.0% | |
| AATGGCAGCTATGCACCAGT+AGG | - | chr3_1:57035134-57035153 | None:intergenic | 50.0% | |
| GCAGCTGAGGTTATGAAGAC+TGG | + | chr3_1:57035727-57035746 | Msa0364270:intron | 50.0% | |
| TAGAAATGTTCGCCGCCTCT+CGG | + | chr3_1:57036084-57036103 | Msa0364270:CDS | 50.0% | |
| ! | AGAGAAAGTGGACTCCAACC+AGG | + | chr3_1:57036127-57036146 | Msa0364270:CDS | 50.0% |
| !! | CGTTGGCTTACTGACCAACT+TGG | + | chr3_1:57034321-57034340 | Msa0364270:intron | 50.0% |
| CTCTCTTGGACATGGCTGTT+TGG | + | chr3_1:57034518-57034537 | Msa0364270:intron | 50.0% | |
| TCTTGGACATGGCTGTTTGG+TGG | + | chr3_1:57034521-57034540 | Msa0364270:intron | 50.0% | |
| AATGGCAGCTATGCACCAGT+AGG | - | chr3_1:57035134-57035153 | None:intergenic | 50.0% | |
| GCAGCTGAGGTTATGAAGAC+TGG | + | chr3_1:57035727-57035746 | Msa0364270:intron | 50.0% | |
| TAGAAATGTTCGCCGCCTCT+CGG | + | chr3_1:57036084-57036103 | Msa0364270:CDS | 50.0% | |
| ! | AGAGAAAGTGGACTCCAACC+AGG | + | chr3_1:57036127-57036146 | Msa0364270:CDS | 50.0% |
| ! | TCCTGAGCTCTAGCTCCCTT+TGG | - | chr3_1:57035778-57035797 | None:intergenic | 55.0% |
| ! | TCCTGAGCTCTAGCTCCCTT+TGG | - | chr3_1:57035778-57035797 | None:intergenic | 55.0% |
| GCCAAAGGGAGCTAGAGCTC+AGG | + | chr3_1:57035774-57035793 | Msa0364270:CDS | 60.0% | |
| GCCAAAGGGAGCTAGAGCTC+AGG | + | chr3_1:57035774-57035793 | Msa0364270:CDS | 60.0% | |
| AATGTTCGCCGCCTCTCGGC+CGG | + | chr3_1:57036088-57036107 | Msa0364270:CDS | 65.0% | |
| ACAAGGACCAACCGGCCGAG+AGG | - | chr3_1:57036102-57036121 | None:intergenic | 65.0% | |
| AATGTTCGCCGCCTCTCGGC+CGG | + | chr3_1:57036088-57036107 | Msa0364270:CDS | 65.0% | |
| ACAAGGACCAACCGGCCGAG+AGG | - | chr3_1:57036102-57036121 | None:intergenic | 65.0% | |
| AGGACCAACCGGCCGAGAGG+CGG | - | chr3_1:57036099-57036118 | None:intergenic | 70.0% | |
| AGGACCAACCGGCCGAGAGG+CGG | - | chr3_1:57036099-57036118 | None:intergenic | 70.0% | |
| TTCGCCGCCTCTCGGCCGGT+TGG | + | chr3_1:57036092-57036111 | Msa0364270:CDS | 75.0% | |
| TTCGCCGCCTCTCGGCCGGT+TGG | + | chr3_1:57036092-57036111 | Msa0364270:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 57034079 | 57036225 | 57034079 | ID=Msa0364270;Name=Msa0364270 |
| chr3_1 | mRNA | 57034079 | 57036225 | 57034079 | ID=Msa0364270-mRNA-1;Parent=Msa0364270;Name=Msa0364270-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.25|0|1|0.75|0.8|5|0|265 |
| chr3_1 | exon | 57034079 | 57034150 | 57034079 | ID=Msa0364270-mRNA-1:exon:10709;Parent=Msa0364270-mRNA-1 |
| chr3_1 | exon | 57034362 | 57034491 | 57034362 | ID=Msa0364270-mRNA-1:exon:10710;Parent=Msa0364270-mRNA-1 |
| chr3_1 | exon | 57034559 | 57034762 | 57034559 | ID=Msa0364270-mRNA-1:exon:10711;Parent=Msa0364270-mRNA-1 |
| chr3_1 | exon | 57035731 | 57035876 | 57035731 | ID=Msa0364270-mRNA-1:exon:10712;Parent=Msa0364270-mRNA-1 |
| chr3_1 | exon | 57035980 | 57036225 | 57035980 | ID=Msa0364270-mRNA-1:exon:10713;Parent=Msa0364270-mRNA-1 |
| chr3_1 | CDS | 57034079 | 57034150 | 57034079 | ID=Msa0364270-mRNA-1:cds;Parent=Msa0364270-mRNA-1 |
| chr3_1 | CDS | 57034362 | 57034491 | 57034362 | ID=Msa0364270-mRNA-1:cds;Parent=Msa0364270-mRNA-1 |
| chr3_1 | CDS | 57034559 | 57034762 | 57034559 | ID=Msa0364270-mRNA-1:cds;Parent=Msa0364270-mRNA-1 |
| chr3_1 | CDS | 57035731 | 57035876 | 57035731 | ID=Msa0364270-mRNA-1:cds;Parent=Msa0364270-mRNA-1 |
| chr3_1 | CDS | 57035980 | 57036225 | 57035980 | ID=Msa0364270-mRNA-1:cds;Parent=Msa0364270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
