Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364430 | XP_003600451.1 | 83.544 | 158 | 21 | 2 | 1 | 154 | 1 | 157 | 2.22e-86 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364430 | sp|Q9XIB4|Y1475_ARATH | 37.410 | 139 | 69 | 4 | 11 | 132 | 33 | 170 | 6.59e-18 | 79.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364430 | G8A2Z6 | 83.544 | 158 | 21 | 2 | 1 | 154 | 1 | 157 | 1.06e-86 | 263 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0364430 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364430 | MtrunA17_Chr3g0103191 | 83.544 | 158 | 21 | 2 | 1 | 154 | 1 | 157 | 2.04e-90 | 263 |
| Msa0364430 | MtrunA17_Chr3g0103181 | 77.987 | 159 | 28 | 3 | 1 | 154 | 1 | 157 | 8.42e-83 | 244 |
| Msa0364430 | MtrunA17_Chr3g0103151 | 76.730 | 159 | 30 | 3 | 1 | 154 | 1 | 157 | 5.95e-82 | 238 |
| Msa0364430 | MtrunA17_Chr3g0103171 | 72.932 | 133 | 29 | 3 | 25 | 152 | 5 | 135 | 2.34e-60 | 187 |
| Msa0364430 | MtrunA17_Chr3g0103201 | 74.737 | 95 | 18 | 2 | 65 | 154 | 1 | 94 | 2.00e-40 | 135 |
| Msa0364430 | MtrunA17_Chr1g0163071 | 47.015 | 134 | 66 | 2 | 26 | 154 | 2 | 135 | 1.65e-36 | 127 |
| Msa0364430 | MtrunA17_Chr7g0233561 | 49.515 | 103 | 50 | 1 | 7 | 107 | 13 | 115 | 2.41e-32 | 117 |
| Msa0364430 | MtrunA17_Chr7g0233571 | 42.958 | 142 | 75 | 2 | 4 | 139 | 2 | 143 | 1.13e-31 | 112 |
| Msa0364430 | MtrunA17_Chr8g0390841 | 41.781 | 146 | 79 | 3 | 11 | 154 | 38 | 179 | 1.14e-30 | 115 |
| Msa0364430 | MtrunA17_Chr3g0131891 | 47.525 | 101 | 51 | 1 | 9 | 107 | 16 | 116 | 9.12e-28 | 105 |
| Msa0364430 | MtrunA17_Chr7g0233521 | 53.659 | 82 | 38 | 0 | 26 | 107 | 2 | 83 | 1.34e-26 | 101 |
| Msa0364430 | MtrunA17_Chr4g0067431 | 39.007 | 141 | 77 | 4 | 10 | 143 | 13 | 151 | 1.36e-25 | 99.4 |
| Msa0364430 | MtrunA17_Chr5g0419201 | 33.125 | 160 | 80 | 4 | 12 | 154 | 16 | 165 | 8.31e-25 | 94.4 |
| Msa0364430 | MtrunA17_Chr1g0208771 | 39.552 | 134 | 75 | 3 | 21 | 154 | 10 | 137 | 1.15e-24 | 98.2 |
| Msa0364430 | MtrunA17_Chr7g0233541 | 51.220 | 82 | 40 | 0 | 26 | 107 | 2 | 83 | 1.28e-24 | 96.3 |
| Msa0364430 | MtrunA17_Chr7g0233531 | 40.000 | 115 | 67 | 1 | 26 | 138 | 2 | 116 | 5.31e-24 | 94.4 |
| Msa0364430 | MtrunA17_Chr1g0163251 | 38.525 | 122 | 68 | 4 | 12 | 130 | 9 | 126 | 5.24e-21 | 87.8 |
| Msa0364430 | MtrunA17_Chr1g0163061 | 43.137 | 102 | 55 | 2 | 8 | 106 | 11 | 112 | 1.90e-20 | 84.7 |
| Msa0364430 | MtrunA17_Chr6g0467351 | 41.837 | 98 | 54 | 2 | 12 | 106 | 15 | 112 | 1.56e-19 | 81.6 |
| Msa0364430 | MtrunA17_Chr1g0162441 | 37.500 | 104 | 61 | 2 | 8 | 107 | 1 | 104 | 1.83e-19 | 83.6 |
| Msa0364430 | MtrunA17_Chr1g0163261 | 39.423 | 104 | 59 | 2 | 9 | 110 | 6 | 107 | 3.63e-19 | 81.6 |
| Msa0364430 | MtrunA17_Chr1g0163191 | 33.913 | 115 | 72 | 2 | 12 | 126 | 9 | 119 | 4.09e-19 | 79.0 |
| Msa0364430 | MtrunA17_Chr1g0163181 | 33.594 | 128 | 70 | 3 | 14 | 130 | 11 | 134 | 6.23e-19 | 82.0 |
| Msa0364430 | MtrunA17_Chr4g0033961 | 32.117 | 137 | 79 | 3 | 12 | 134 | 6 | 142 | 2.92e-18 | 80.1 |
| Msa0364430 | MtrunA17_Chr1g0162411 | 37.143 | 105 | 63 | 2 | 7 | 109 | 3 | 106 | 4.51e-17 | 77.0 |
| Msa0364430 | MtrunA17_Chr1g0163241 | 33.333 | 138 | 83 | 5 | 15 | 151 | 14 | 143 | 8.44e-17 | 72.8 |
| Msa0364430 | MtrunA17_Chr3g0077451 | 39.759 | 83 | 50 | 0 | 24 | 106 | 10 | 92 | 1.04e-15 | 71.6 |
| Msa0364430 | MtrunA17_Chr1g0163131 | 32.867 | 143 | 81 | 6 | 2 | 133 | 8 | 146 | 1.25e-15 | 72.0 |
| Msa0364430 | MtrunA17_Chr1g0163201 | 31.683 | 101 | 67 | 1 | 25 | 125 | 18 | 116 | 1.63e-15 | 72.4 |
| Msa0364430 | MtrunA17_Chr1g0171611 | 31.008 | 129 | 82 | 4 | 9 | 135 | 6 | 129 | 2.12e-15 | 71.2 |
| Msa0364430 | MtrunA17_Chr1g0163221 | 35.000 | 100 | 62 | 2 | 10 | 106 | 9 | 108 | 5.09e-15 | 70.9 |
| Msa0364430 | MtrunA17_Chr1g0163101 | 31.915 | 141 | 81 | 5 | 2 | 130 | 7 | 144 | 2.17e-14 | 67.0 |
| Msa0364430 | MtrunA17_Chr1g0163231 | 31.250 | 128 | 72 | 4 | 9 | 122 | 6 | 131 | 2.26e-14 | 68.6 |
| Msa0364430 | MtrunA17_Chr1g0163161 | 36.792 | 106 | 54 | 3 | 38 | 133 | 1 | 103 | 4.35e-14 | 65.1 |
| Msa0364430 | MtrunA17_Chr3g0077411 | 37.113 | 97 | 59 | 1 | 12 | 106 | 25 | 121 | 5.05e-14 | 68.2 |
| Msa0364430 | MtrunA17_Chr3g0077411 | 34.694 | 98 | 61 | 2 | 12 | 106 | 262 | 359 | 2.09e-11 | 60.8 |
| Msa0364430 | MtrunA17_Chr3g0077461 | 38.636 | 88 | 52 | 1 | 20 | 107 | 19 | 104 | 7.43e-14 | 67.8 |
| Msa0364430 | MtrunA17_Chr3g0077461 | 38.144 | 97 | 58 | 1 | 12 | 106 | 237 | 333 | 3.90e-13 | 65.9 |
| Msa0364430 | MtrunA17_Chr5g0429931 | 38.554 | 83 | 51 | 0 | 25 | 107 | 10 | 92 | 9.59e-14 | 66.2 |
| Msa0364430 | MtrunA17_Chr3g0077381 | 33.684 | 95 | 63 | 0 | 13 | 107 | 23 | 117 | 3.74e-13 | 65.9 |
| Msa0364430 | MtrunA17_Chr3g0077381 | 35.294 | 85 | 55 | 0 | 22 | 106 | 259 | 343 | 2.26e-11 | 60.5 |
| Msa0364430 | MtrunA17_Chr4g0009491 | 36.471 | 85 | 54 | 0 | 22 | 106 | 237 | 321 | 1.27e-12 | 64.3 |
| Msa0364430 | MtrunA17_Chr4g0009491 | 30.435 | 92 | 64 | 0 | 16 | 107 | 3 | 94 | 6.52e-11 | 59.3 |
| Msa0364430 | MtrunA17_Chr1g0163081 | 34.188 | 117 | 65 | 4 | 26 | 133 | 6 | 119 | 1.22e-11 | 58.9 |
| Msa0364430 | MtrunA17_Chr1g0163121 | 33.043 | 115 | 65 | 4 | 24 | 129 | 9 | 120 | 4.82e-11 | 57.4 |
| Msa0364430 | MtrunA17_Chr1g0162421 | 37.931 | 58 | 36 | 0 | 24 | 81 | 7 | 64 | 6.75e-11 | 55.1 |
| Msa0364430 | MtrunA17_Chr3g0077361 | 33.333 | 99 | 63 | 2 | 12 | 107 | 40 | 138 | 7.76e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364430 | AT1G49475.1 | 37.410 | 139 | 69 | 4 | 11 | 132 | 33 | 170 | 6.70e-19 | 79.3 |
| Msa0364430 | AT4G01580.1 | 34.513 | 113 | 72 | 1 | 11 | 121 | 29 | 141 | 8.83e-19 | 79.0 |
| Msa0364430 | AT3G18960.1 | 37.113 | 97 | 59 | 1 | 11 | 105 | 29 | 125 | 3.84e-17 | 75.1 |
| Msa0364430 | AT3G18960.2 | 37.113 | 97 | 59 | 1 | 11 | 105 | 29 | 125 | 5.10e-17 | 74.3 |
| Msa0364430 | AT3G18990.1 | 36.893 | 103 | 62 | 2 | 8 | 107 | 1 | 103 | 2.84e-16 | 74.7 |
| Msa0364430 | AT3G18990.2 | 36.893 | 103 | 62 | 2 | 8 | 107 | 1 | 103 | 3.12e-16 | 74.7 |
| Msa0364430 | AT3G18960.3 | 39.506 | 81 | 49 | 0 | 25 | 105 | 8 | 88 | 1.80e-14 | 67.4 |
Find 35 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCTTGGACATGGCTCTT+TGG | 0.220059 | 3_1:+57416460 | Msa0364430:CDS |
| TAATGAATCAGTTGAGATTT+TGG | 0.232448 | 3_1:+57416624 | Msa0364430:CDS |
| GCACTAAATGGAAAGTTTAT+TGG | 0.247327 | 3_1:+57416378 | Msa0364430:CDS |
| AGCCTCCTGATGGCACTAAA+TGG | 0.283589 | 3_1:+57416366 | Msa0364430:CDS |
| CAATCCTTTGAAGATTAGTT+TGG | 0.289306 | 3_1:-57416000 | None:intergenic |
| CGACCACATAAGAAAGTTAG+AGG | 0.333223 | 3_1:+57416703 | Msa0364430:CDS |
| CGGTGAGATTTGGTTTGAAA+AGG | 0.346597 | 3_1:+57416412 | Msa0364430:CDS |
| TTTACTGAAAATTACTCTCT+TGG | 0.363298 | 3_1:+57416446 | Msa0364430:CDS |
| ACTTTCCATTTAGTGCCATC+AGG | 0.440549 | 3_1:-57416371 | None:intergenic |
| TGTCTCCTTGTAAACTTACT+TGG | 0.440861 | 3_1:-57416311 | None:intergenic |
| AAGTTTGATGTACACATACT+TGG | 0.463208 | 3_1:+57416509 | Msa0364430:CDS |
| TCCTTTGAAGATTAGTTTGG+AGG | 0.466963 | 3_1:-57415997 | None:intergenic |
| GGAGGATGATCTTGAAGAAA+CGG | 0.470421 | 3_1:-57415979 | None:intergenic |
| AAACCTCTAACTTTCTTATG+TGG | 0.486426 | 3_1:-57416706 | None:intergenic |
| GGTGAGATTTGGTTTGAAAA+GGG | 0.494622 | 3_1:+57416413 | Msa0364430:CDS |
| AGATTTGGTTTGAAAAGGGA+TGG | 0.505009 | 3_1:+57416417 | Msa0364430:CDS |
| TCTTGGACATGGCTCTTTGG+TGG | 0.506179 | 3_1:+57416463 | Msa0364430:CDS |
| GAGGATGATCTTGAAGAAAC+GGG | 0.510879 | 3_1:-57415978 | None:intergenic |
| CTAACTTTCTTATGTGGTCG+AGG | 0.536777 | 3_1:-57416700 | None:intergenic |
| AAGTATGTGTACATCAAACT+TGG | 0.543256 | 3_1:-57416507 | None:intergenic |
| TCAGGAGGCTTTATCAACAC+TGG | 0.549585 | 3_1:-57416353 | None:intergenic |
| TCCTCCAAACTAATCTTCAA+AGG | 0.552905 | 3_1:+57415996 | Msa0364430:CDS |
| TGTGGTCGAGGAGAAACTAA+AGG | 0.560843 | 3_1:-57416688 | None:intergenic |
| AAATACCAAGTAAGTTTACA+AGG | 0.564024 | 3_1:+57416306 | Msa0364430:CDS |
| ATGGCTTACTAGGAAGAAGA+AGG | 0.589973 | 3_1:+57416651 | Msa0364430:CDS |
| TCTTGAAGAAACGGGTGGGA+AGG | 0.597347 | 3_1:-57415970 | None:intergenic |
| TGATGATGAAAATGAAAATG+TGG | 0.607241 | 3_1:+57416588 | Msa0364430:CDS |
| ACTCCATCATCTATGGCTAG+AGG | 0.612430 | 3_1:+57415938 | None:intergenic |
| TTCCATTTAGTGCCATCAGG+AGG | 0.615384 | 3_1:-57416368 | None:intergenic |
| GTGTTGATAAAGCCTCCTGA+TGG | 0.632454 | 3_1:+57416356 | Msa0364430:CDS |
| GAAAATTACTCTCTTGGACA+TGG | 0.632483 | 3_1:+57416452 | Msa0364430:CDS |
| ATGATCTTGAAGAAACGGGT+GGG | 0.632829 | 3_1:-57415974 | None:intergenic |
| GATGATCTTGAAGAAACGGG+TGG | 0.640742 | 3_1:-57415975 | None:intergenic |
| TTTACAAGGAGACATGGCGT+TGG | 0.659022 | 3_1:+57416320 | Msa0364430:CDS |
| AGTAAGTTTACAAGGAGACA+TGG | 0.668245 | 3_1:+57416314 | Msa0364430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAGTAAATAGAACTAAT+AGG | - | chr3_1:57416038-57416057 | None:intergenic | 15.0% |
| !! | TCTATTTACTTTAAATTTCT+TGG | + | chr3_1:57416044-57416063 | Msa0364430:intron | 15.0% |
| !! | TTAAAGTAAATAGAACTAAT+AGG | - | chr3_1:57416038-57416057 | None:intergenic | 15.0% |
| !! | TCTATTTACTTTAAATTTCT+TGG | + | chr3_1:57416044-57416063 | Msa0364430:intron | 15.0% |
| !!! | TAGCACTAGAAATTTTATTA+TGG | + | chr3_1:57416174-57416193 | Msa0364430:intron | 20.0% |
| !!! | TAGCACTAGAAATTTTATTA+TGG | + | chr3_1:57416174-57416193 | Msa0364430:intron | 20.0% |
| ! | AAATACCAAGTAAGTTTACA+AGG | + | chr3_1:57416306-57416325 | Msa0364430:CDS | 25.0% |
| ! | GTTTATTGGAGAAAAATCAA+CGG | + | chr3_1:57416392-57416411 | Msa0364430:CDS | 25.0% |
| ! | TTTACTGAAAATTACTCTCT+TGG | + | chr3_1:57416446-57416465 | Msa0364430:CDS | 25.0% |
| !! | TGATGATGAAAATGAAAATG+TGG | + | chr3_1:57416588-57416607 | Msa0364430:CDS | 25.0% |
| !! | TAATGAATCAGTTGAGATTT+TGG | + | chr3_1:57416624-57416643 | Msa0364430:CDS | 25.0% |
| ! | AAATACCAAGTAAGTTTACA+AGG | + | chr3_1:57416306-57416325 | Msa0364430:CDS | 25.0% |
| ! | GTTTATTGGAGAAAAATCAA+CGG | + | chr3_1:57416392-57416411 | Msa0364430:CDS | 25.0% |
| ! | TTTACTGAAAATTACTCTCT+TGG | + | chr3_1:57416446-57416465 | Msa0364430:CDS | 25.0% |
| !! | TGATGATGAAAATGAAAATG+TGG | + | chr3_1:57416588-57416607 | Msa0364430:CDS | 25.0% |
| !! | TAATGAATCAGTTGAGATTT+TGG | + | chr3_1:57416624-57416643 | Msa0364430:CDS | 25.0% |
| ! | CAATCCTTTGAAGATTAGTT+TGG | - | chr3_1:57416003-57416022 | None:intergenic | 30.0% |
| !! | TCACTGTTCTATTTCTAGAA+AGG | + | chr3_1:57416230-57416249 | Msa0364430:intron | 30.0% |
| GCACTAAATGGAAAGTTTAT+TGG | + | chr3_1:57416378-57416397 | Msa0364430:CDS | 30.0% | |
| AAGTATGTGTACATCAAACT+TGG | - | chr3_1:57416510-57416529 | None:intergenic | 30.0% | |
| AAGTTTGATGTACACATACT+TGG | + | chr3_1:57416509-57416528 | Msa0364430:CDS | 30.0% | |
| ! | CAATCCTTTGAAGATTAGTT+TGG | - | chr3_1:57416003-57416022 | None:intergenic | 30.0% |
| !! | TCACTGTTCTATTTCTAGAA+AGG | + | chr3_1:57416230-57416249 | Msa0364430:intron | 30.0% |
| GCACTAAATGGAAAGTTTAT+TGG | + | chr3_1:57416378-57416397 | Msa0364430:CDS | 30.0% | |
| AAGTATGTGTACATCAAACT+TGG | - | chr3_1:57416510-57416529 | None:intergenic | 30.0% | |
| AAGTTTGATGTACACATACT+TGG | + | chr3_1:57416509-57416528 | Msa0364430:CDS | 30.0% | |
| TCCTCCAAACTAATCTTCAA+AGG | + | chr3_1:57415996-57416015 | Msa0364430:CDS | 35.0% | |
| !! | TCCTTTGAAGATTAGTTTGG+AGG | - | chr3_1:57416000-57416019 | None:intergenic | 35.0% |
| CTAGAAAGGATCGTTGTATT+TGG | + | chr3_1:57416244-57416263 | Msa0364430:intron | 35.0% | |
| ! | TATTTGGCACCTTTTGCTTA+AGG | + | chr3_1:57416260-57416279 | Msa0364430:intron | 35.0% |
| ! | ATTTGGCACCTTTTGCTTAA+GGG | + | chr3_1:57416261-57416280 | Msa0364430:intron | 35.0% |
| TGTCTCCTTGTAAACTTACT+TGG | - | chr3_1:57416314-57416333 | None:intergenic | 35.0% | |
| AGTAAGTTTACAAGGAGACA+TGG | + | chr3_1:57416314-57416333 | Msa0364430:CDS | 35.0% | |
| GAAAAATCAACGGTGAGATT+TGG | + | chr3_1:57416402-57416421 | Msa0364430:CDS | 35.0% | |
| !! | GGTGAGATTTGGTTTGAAAA+GGG | + | chr3_1:57416413-57416432 | Msa0364430:CDS | 35.0% |
| !! | AGATTTGGTTTGAAAAGGGA+TGG | + | chr3_1:57416417-57416436 | Msa0364430:CDS | 35.0% |
| GAAAATTACTCTCTTGGACA+TGG | + | chr3_1:57416452-57416471 | Msa0364430:CDS | 35.0% | |
| ! | CAGTTGAGATTTTGGATGAA+TGG | + | chr3_1:57416632-57416651 | Msa0364430:CDS | 35.0% |
| ! | TTTTGGATGAATGGCTTACT+AGG | + | chr3_1:57416641-57416660 | Msa0364430:CDS | 35.0% |
| TCCTCCAAACTAATCTTCAA+AGG | + | chr3_1:57415996-57416015 | Msa0364430:CDS | 35.0% | |
| !! | TCCTTTGAAGATTAGTTTGG+AGG | - | chr3_1:57416000-57416019 | None:intergenic | 35.0% |
| CTAGAAAGGATCGTTGTATT+TGG | + | chr3_1:57416244-57416263 | Msa0364430:intron | 35.0% | |
| ! | TATTTGGCACCTTTTGCTTA+AGG | + | chr3_1:57416260-57416279 | Msa0364430:intron | 35.0% |
| ! | ATTTGGCACCTTTTGCTTAA+GGG | + | chr3_1:57416261-57416280 | Msa0364430:intron | 35.0% |
| TGTCTCCTTGTAAACTTACT+TGG | - | chr3_1:57416314-57416333 | None:intergenic | 35.0% | |
| AGTAAGTTTACAAGGAGACA+TGG | + | chr3_1:57416314-57416333 | Msa0364430:CDS | 35.0% | |
| GAAAAATCAACGGTGAGATT+TGG | + | chr3_1:57416402-57416421 | Msa0364430:CDS | 35.0% | |
| !! | GGTGAGATTTGGTTTGAAAA+GGG | + | chr3_1:57416413-57416432 | Msa0364430:CDS | 35.0% |
| !! | AGATTTGGTTTGAAAAGGGA+TGG | + | chr3_1:57416417-57416436 | Msa0364430:CDS | 35.0% |
| GAAAATTACTCTCTTGGACA+TGG | + | chr3_1:57416452-57416471 | Msa0364430:CDS | 35.0% | |
| ! | CAGTTGAGATTTTGGATGAA+TGG | + | chr3_1:57416632-57416651 | Msa0364430:CDS | 35.0% |
| ! | TTTTGGATGAATGGCTTACT+AGG | + | chr3_1:57416641-57416660 | Msa0364430:CDS | 35.0% |
| ATGATCTTGAAGAAACGGGT+GGG | - | chr3_1:57415977-57415996 | None:intergenic | 40.0% | |
| GAGGATGATCTTGAAGAAAC+GGG | - | chr3_1:57415981-57416000 | None:intergenic | 40.0% | |
| GGAGGATGATCTTGAAGAAA+CGG | - | chr3_1:57415982-57416001 | None:intergenic | 40.0% | |
| ! | TTTGGCACCTTTTGCTTAAG+GGG | + | chr3_1:57416262-57416281 | Msa0364430:intron | 40.0% |
| ACTTTCCATTTAGTGCCATC+AGG | - | chr3_1:57416374-57416393 | None:intergenic | 40.0% | |
| !! | CGGTGAGATTTGGTTTGAAA+AGG | + | chr3_1:57416412-57416431 | Msa0364430:CDS | 40.0% |
| ATGGCTTACTAGGAAGAAGA+AGG | + | chr3_1:57416651-57416670 | Msa0364430:CDS | 40.0% | |
| CTAACTTTCTTATGTGGTCG+AGG | - | chr3_1:57416703-57416722 | None:intergenic | 40.0% | |
| ATGATCTTGAAGAAACGGGT+GGG | - | chr3_1:57415977-57415996 | None:intergenic | 40.0% | |
| GAGGATGATCTTGAAGAAAC+GGG | - | chr3_1:57415981-57416000 | None:intergenic | 40.0% | |
| GGAGGATGATCTTGAAGAAA+CGG | - | chr3_1:57415982-57416001 | None:intergenic | 40.0% | |
| ! | TTTGGCACCTTTTGCTTAAG+GGG | + | chr3_1:57416262-57416281 | Msa0364430:intron | 40.0% |
| ACTTTCCATTTAGTGCCATC+AGG | - | chr3_1:57416374-57416393 | None:intergenic | 40.0% | |
| !! | CGGTGAGATTTGGTTTGAAA+AGG | + | chr3_1:57416412-57416431 | Msa0364430:CDS | 40.0% |
| ATGGCTTACTAGGAAGAAGA+AGG | + | chr3_1:57416651-57416670 | Msa0364430:CDS | 40.0% | |
| CTAACTTTCTTATGTGGTCG+AGG | - | chr3_1:57416703-57416722 | None:intergenic | 40.0% | |
| GATGATCTTGAAGAAACGGG+TGG | - | chr3_1:57415978-57415997 | None:intergenic | 45.0% | |
| ! | TTGGCACCTTTTGCTTAAGG+GGG | + | chr3_1:57416263-57416282 | Msa0364430:intron | 45.0% |
| AGAAACCCCCCTTAAGCAAA+AGG | - | chr3_1:57416272-57416291 | None:intergenic | 45.0% | |
| TTTACAAGGAGACATGGCGT+TGG | + | chr3_1:57416320-57416339 | Msa0364430:CDS | 45.0% | |
| ! | TCAGGAGGCTTTATCAACAC+TGG | - | chr3_1:57416356-57416375 | None:intergenic | 45.0% |
| ! | GTGTTGATAAAGCCTCCTGA+TGG | + | chr3_1:57416356-57416375 | Msa0364430:CDS | 45.0% |
| TTCCATTTAGTGCCATCAGG+AGG | - | chr3_1:57416371-57416390 | None:intergenic | 45.0% | |
| TGTGGTCGAGGAGAAACTAA+AGG | - | chr3_1:57416691-57416710 | None:intergenic | 45.0% | |
| GATGATCTTGAAGAAACGGG+TGG | - | chr3_1:57415978-57415997 | None:intergenic | 45.0% | |
| ! | TTGGCACCTTTTGCTTAAGG+GGG | + | chr3_1:57416263-57416282 | Msa0364430:intron | 45.0% |
| AGAAACCCCCCTTAAGCAAA+AGG | - | chr3_1:57416272-57416291 | None:intergenic | 45.0% | |
| TTTACAAGGAGACATGGCGT+TGG | + | chr3_1:57416320-57416339 | Msa0364430:CDS | 45.0% | |
| ! | TCAGGAGGCTTTATCAACAC+TGG | - | chr3_1:57416356-57416375 | None:intergenic | 45.0% |
| ! | GTGTTGATAAAGCCTCCTGA+TGG | + | chr3_1:57416356-57416375 | Msa0364430:CDS | 45.0% |
| TTCCATTTAGTGCCATCAGG+AGG | - | chr3_1:57416371-57416390 | None:intergenic | 45.0% | |
| TGTGGTCGAGGAGAAACTAA+AGG | - | chr3_1:57416691-57416710 | None:intergenic | 45.0% | |
| TCTTGAAGAAACGGGTGGGA+AGG | - | chr3_1:57415973-57415992 | None:intergenic | 50.0% | |
| CATGTTGCATGTGTGACGTG+TGG | - | chr3_1:57416077-57416096 | None:intergenic | 50.0% | |
| ! | TGGCACCTTTTGCTTAAGGG+GGG | + | chr3_1:57416264-57416283 | Msa0364430:intron | 50.0% |
| AGCCTCCTGATGGCACTAAA+TGG | + | chr3_1:57416366-57416385 | Msa0364430:CDS | 50.0% | |
| CTCTCTTGGACATGGCTCTT+TGG | + | chr3_1:57416460-57416479 | Msa0364430:CDS | 50.0% | |
| TCTTGGACATGGCTCTTTGG+TGG | + | chr3_1:57416463-57416482 | Msa0364430:CDS | 50.0% | |
| TCTTGAAGAAACGGGTGGGA+AGG | - | chr3_1:57415973-57415992 | None:intergenic | 50.0% | |
| CATGTTGCATGTGTGACGTG+TGG | - | chr3_1:57416077-57416096 | None:intergenic | 50.0% | |
| ! | TGGCACCTTTTGCTTAAGGG+GGG | + | chr3_1:57416264-57416283 | Msa0364430:intron | 50.0% |
| AGCCTCCTGATGGCACTAAA+TGG | + | chr3_1:57416366-57416385 | Msa0364430:CDS | 50.0% | |
| CTCTCTTGGACATGGCTCTT+TGG | + | chr3_1:57416460-57416479 | Msa0364430:CDS | 50.0% | |
| TCTTGGACATGGCTCTTTGG+TGG | + | chr3_1:57416463-57416482 | Msa0364430:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 57415950 | 57416723 | 57415950 | ID=Msa0364430;Name=Msa0364430 |
| chr3_1 | mRNA | 57415950 | 57416723 | 57415950 | ID=Msa0364430-mRNA-1;Parent=Msa0364430;Name=Msa0364430-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|0.5|0.33|3|0|154 |
| chr3_1 | exon | 57415950 | 57416021 | 57415950 | ID=Msa0364430-mRNA-1:exon:10793;Parent=Msa0364430-mRNA-1 |
| chr3_1 | exon | 57416305 | 57416552 | 57416305 | ID=Msa0364430-mRNA-1:exon:10794;Parent=Msa0364430-mRNA-1 |
| chr3_1 | exon | 57416582 | 57416723 | 57416582 | ID=Msa0364430-mRNA-1:exon:10795;Parent=Msa0364430-mRNA-1 |
| chr3_1 | CDS | 57415950 | 57416021 | 57415950 | ID=Msa0364430-mRNA-1:cds;Parent=Msa0364430-mRNA-1 |
| chr3_1 | CDS | 57416305 | 57416552 | 57416305 | ID=Msa0364430-mRNA-1:cds;Parent=Msa0364430-mRNA-1 |
| chr3_1 | CDS | 57416582 | 57416723 | 57416582 | ID=Msa0364430-mRNA-1:cds;Parent=Msa0364430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
