Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364490 | XP_039687150.1 | 85.915 | 284 | 40 | 0 | 1 | 284 | 1 | 284 | 4.59e-178 | 502 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364490 | sp|Q8L3W1|VRN1_ARATH | 25.806 | 341 | 178 | 10 | 8 | 282 | 1 | 332 | 1.40e-29 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364490 | G7IY86 | 85.915 | 284 | 40 | 0 | 1 | 284 | 1 | 284 | 2.19e-178 | 502 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0364490 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364490 | MtrunA17_Chr3g0103171 | 84.615 | 260 | 40 | 0 | 25 | 284 | 5 | 264 | 1.87e-163 | 454 |
| Msa0364490 | MtrunA17_Chr3g0103181 | 69.123 | 285 | 80 | 3 | 1 | 284 | 1 | 278 | 1.37e-139 | 394 |
| Msa0364490 | MtrunA17_Chr3g0103191 | 71.542 | 253 | 69 | 3 | 1 | 252 | 1 | 251 | 1.63e-126 | 360 |
| Msa0364490 | MtrunA17_Chr3g0103201 | 66.063 | 221 | 72 | 2 | 65 | 284 | 1 | 219 | 6.50e-103 | 299 |
| Msa0364490 | MtrunA17_Chr3g0103151 | 79.747 | 158 | 32 | 0 | 1 | 158 | 1 | 158 | 2.46e-93 | 273 |
| Msa0364490 | MtrunA17_Chr3g0103161 | 68.750 | 128 | 38 | 1 | 162 | 289 | 2 | 127 | 1.50e-55 | 176 |
| Msa0364490 | MtrunA17_Chr1g0163071 | 31.271 | 291 | 161 | 6 | 26 | 284 | 2 | 285 | 7.19e-41 | 144 |
| Msa0364490 | MtrunA17_Chr8g0390841 | 31.210 | 314 | 168 | 9 | 4 | 284 | 31 | 329 | 2.24e-40 | 147 |
| Msa0364490 | MtrunA17_Chr8g0390841 | 33.750 | 160 | 73 | 7 | 154 | 284 | 361 | 516 | 4.56e-13 | 69.3 |
| Msa0364490 | MtrunA17_Chr1g0208771 | 33.000 | 300 | 152 | 10 | 21 | 288 | 10 | 292 | 1.28e-39 | 144 |
| Msa0364490 | MtrunA17_Chr1g0208771 | 31.858 | 226 | 130 | 7 | 68 | 289 | 256 | 461 | 3.28e-19 | 87.0 |
| Msa0364490 | MtrunA17_Chr7g0233561 | 30.795 | 302 | 177 | 7 | 9 | 284 | 15 | 310 | 3.18e-37 | 134 |
| Msa0364490 | MtrunA17_Chr1g0163251 | 30.496 | 282 | 181 | 5 | 12 | 287 | 9 | 281 | 7.54e-35 | 129 |
| Msa0364490 | MtrunA17_Chr7g0233521 | 31.502 | 273 | 160 | 8 | 26 | 284 | 2 | 261 | 2.25e-33 | 123 |
| Msa0364490 | MtrunA17_Chr1g0163261 | 27.622 | 286 | 193 | 4 | 9 | 287 | 6 | 284 | 1.05e-31 | 119 |
| Msa0364490 | MtrunA17_Chr4g0067431 | 31.457 | 302 | 176 | 11 | 10 | 284 | 13 | 310 | 1.70e-31 | 119 |
| Msa0364490 | MtrunA17_Chr3g0131891 | 29.655 | 290 | 186 | 8 | 9 | 284 | 16 | 301 | 1.71e-30 | 117 |
| Msa0364490 | MtrunA17_Chr1g0163181 | 29.097 | 299 | 168 | 10 | 14 | 285 | 11 | 292 | 2.44e-30 | 118 |
| Msa0364490 | MtrunA17_Chr1g0163201 | 29.474 | 285 | 163 | 8 | 25 | 287 | 18 | 286 | 3.13e-28 | 112 |
| Msa0364490 | MtrunA17_Chr7g0233541 | 30.634 | 284 | 165 | 10 | 26 | 284 | 2 | 278 | 1.23e-27 | 108 |
| Msa0364490 | MtrunA17_Chr1g0163131 | 28.197 | 305 | 186 | 9 | 2 | 282 | 8 | 303 | 2.41e-27 | 108 |
| Msa0364490 | MtrunA17_Chr7g0233571 | 33.333 | 216 | 120 | 6 | 9 | 204 | 7 | 218 | 1.23e-26 | 103 |
| Msa0364490 | MtrunA17_Chr7g0233531 | 30.072 | 276 | 160 | 10 | 26 | 284 | 2 | 261 | 1.00e-25 | 103 |
| Msa0364490 | MtrunA17_Chr3g0077451 | 27.941 | 272 | 142 | 8 | 24 | 287 | 10 | 235 | 6.04e-25 | 100 |
| Msa0364490 | MtrunA17_Chr5g0429931 | 29.520 | 271 | 146 | 8 | 25 | 287 | 10 | 243 | 1.57e-24 | 99.0 |
| Msa0364490 | MtrunA17_Chr5g0419201 | 33.133 | 166 | 93 | 4 | 12 | 166 | 16 | 174 | 5.35e-24 | 96.3 |
| Msa0364490 | MtrunA17_Chr1g0163221 | 28.912 | 294 | 177 | 10 | 10 | 284 | 9 | 289 | 2.97e-23 | 97.8 |
| Msa0364490 | MtrunA17_Chr1g0163231 | 25.589 | 297 | 181 | 9 | 9 | 287 | 6 | 280 | 1.80e-22 | 94.7 |
| Msa0364490 | MtrunA17_Chr1g0171611 | 25.430 | 291 | 177 | 8 | 9 | 287 | 6 | 268 | 3.14e-22 | 94.0 |
| Msa0364490 | MtrunA17_Chr3g0077411 | 26.531 | 294 | 177 | 6 | 1 | 284 | 251 | 515 | 2.76e-21 | 93.6 |
| Msa0364490 | MtrunA17_Chr3g0077411 | 28.058 | 278 | 145 | 9 | 12 | 287 | 25 | 249 | 1.57e-18 | 85.5 |
| Msa0364490 | MtrunA17_Chr1g0154131 | 25.987 | 304 | 190 | 7 | 10 | 289 | 182 | 474 | 2.78e-21 | 93.2 |
| Msa0364490 | MtrunA17_Chr6g0467351 | 40.367 | 109 | 60 | 3 | 10 | 113 | 13 | 121 | 2.69e-20 | 87.4 |
| Msa0364490 | MtrunA17_Chr4g0033961 | 34.848 | 132 | 76 | 2 | 12 | 133 | 6 | 137 | 3.70e-20 | 89.7 |
| Msa0364490 | MtrunA17_Chr1g0162441 | 35.075 | 134 | 81 | 3 | 8 | 135 | 1 | 134 | 4.20e-20 | 89.7 |
| Msa0364490 | MtrunA17_Chr1g0163191 | 38.095 | 105 | 61 | 2 | 12 | 116 | 9 | 109 | 8.37e-20 | 84.3 |
| Msa0364490 | MtrunA17_Chr1g0163061 | 42.308 | 104 | 57 | 2 | 8 | 108 | 11 | 114 | 3.06e-19 | 85.1 |
| Msa0364490 | MtrunA17_Chr1g0154161 | 25.589 | 297 | 181 | 8 | 13 | 287 | 30 | 308 | 2.10e-18 | 83.6 |
| Msa0364490 | MtrunA17_Chr1g0163241 | 35.065 | 154 | 87 | 5 | 15 | 159 | 14 | 163 | 7.85e-18 | 79.0 |
| Msa0364490 | MtrunA17_Chr3g0077461 | 28.966 | 290 | 139 | 12 | 4 | 279 | 225 | 461 | 9.88e-18 | 82.8 |
| Msa0364490 | MtrunA17_Chr3g0077461 | 40.449 | 89 | 51 | 1 | 20 | 108 | 19 | 105 | 1.34e-15 | 76.6 |
| Msa0364490 | MtrunA17_Chr3g0077421 | 28.205 | 234 | 115 | 8 | 57 | 282 | 4 | 192 | 1.25e-17 | 79.3 |
| Msa0364490 | MtrunA17_Chr3g0077441 | 28.205 | 234 | 115 | 8 | 57 | 282 | 4 | 192 | 1.25e-17 | 79.3 |
| Msa0364490 | MtrunA17_Chr3g0077431 | 27.197 | 239 | 120 | 8 | 57 | 287 | 4 | 196 | 3.35e-17 | 78.2 |
| Msa0364490 | MtrunA17_Chr1g0162411 | 39.216 | 102 | 58 | 2 | 12 | 111 | 7 | 106 | 1.85e-16 | 79.0 |
| Msa0364490 | MtrunA17_Chr4g0009491 | 41.379 | 87 | 51 | 0 | 22 | 108 | 237 | 323 | 1.37e-15 | 76.6 |
| Msa0364490 | MtrunA17_Chr4g0009491 | 31.183 | 93 | 64 | 0 | 16 | 108 | 3 | 95 | 1.17e-11 | 64.7 |
| Msa0364490 | MtrunA17_Chr6g0476181 | 38.400 | 125 | 70 | 5 | 26 | 147 | 2 | 122 | 1.82e-15 | 72.4 |
| Msa0364490 | MtrunA17_Chr3g0077381 | 35.417 | 96 | 62 | 0 | 13 | 108 | 23 | 118 | 4.96e-15 | 74.7 |
| Msa0364490 | MtrunA17_Chr3g0077381 | 40.230 | 87 | 52 | 0 | 22 | 108 | 259 | 345 | 4.64e-14 | 72.0 |
| Msa0364490 | MtrunA17_Chr3g0077361 | 24.354 | 271 | 151 | 7 | 12 | 279 | 40 | 259 | 6.32e-14 | 71.6 |
| Msa0364490 | MtrunA17_Chr1g0163081 | 32.143 | 140 | 85 | 4 | 26 | 159 | 6 | 141 | 2.11e-13 | 66.2 |
| Msa0364490 | MtrunA17_Chr1g0163121 | 35.345 | 116 | 65 | 4 | 24 | 133 | 9 | 120 | 6.24e-13 | 65.1 |
| Msa0364490 | MtrunA17_Chr1g0163101 | 29.070 | 172 | 101 | 7 | 2 | 159 | 7 | 171 | 1.87e-12 | 64.7 |
| Msa0364490 | MtrunA17_Chr1g0163161 | 37.255 | 102 | 55 | 3 | 38 | 133 | 1 | 99 | 3.00e-12 | 62.8 |
| Msa0364490 | MtrunA17_Chr1g0163141 | 34.375 | 128 | 74 | 4 | 24 | 144 | 9 | 133 | 7.35e-12 | 63.2 |
| Msa0364490 | MtrunA17_Chr1g0162161 | 29.134 | 127 | 82 | 4 | 26 | 147 | 4 | 127 | 1.27e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364490 | AT3G18990.1 | 25.806 | 341 | 178 | 10 | 8 | 282 | 1 | 332 | 1.43e-30 | 117 |
| Msa0364490 | AT3G18990.2 | 25.806 | 341 | 178 | 10 | 8 | 282 | 1 | 332 | 3.78e-30 | 117 |
| Msa0364490 | AT1G49475.1 | 38.393 | 112 | 62 | 3 | 11 | 120 | 33 | 139 | 3.48e-16 | 75.5 |
| Msa0364490 | AT4G01580.1 | 34.211 | 114 | 72 | 2 | 11 | 121 | 29 | 142 | 5.06e-16 | 75.1 |
| Msa0364490 | AT4G33280.1 | 26.073 | 303 | 196 | 10 | 10 | 288 | 23 | 321 | 1.23e-15 | 76.3 |
| Msa0364490 | AT3G18960.1 | 36.000 | 100 | 62 | 1 | 11 | 108 | 29 | 128 | 4.10e-15 | 73.2 |
| Msa0364490 | AT3G18960.2 | 36.000 | 100 | 62 | 1 | 11 | 108 | 29 | 128 | 4.95e-15 | 72.4 |
| Msa0364490 | AT3G18960.3 | 38.095 | 84 | 52 | 0 | 25 | 108 | 8 | 91 | 1.53e-12 | 65.1 |
| Msa0364490 | AT1G49480.3 | 28.689 | 122 | 81 | 3 | 163 | 282 | 100 | 217 | 4.16e-12 | 64.7 |
| Msa0364490 | AT1G49480.1 | 28.689 | 122 | 81 | 3 | 163 | 282 | 100 | 217 | 4.16e-12 | 64.7 |
| Msa0364490 | AT1G49480.2 | 28.689 | 122 | 81 | 3 | 163 | 282 | 100 | 217 | 4.16e-12 | 64.7 |
Find 48 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCTTCTTGTAAACTTATT+TGG | 0.150133 | 3_1:-57565191 | None:intergenic |
| GCACTAAATGGAAAATTTAT+TGG | 0.191450 | 3_1:+57565258 | Msa0364490:CDS |
| AAGTTTGATGTACTCATATT+TGG | 0.197833 | 3_1:+57565389 | Msa0364490:CDS |
| GGTACCTAATATACATTTAA+AGG | 0.264822 | 3_1:+57566701 | Msa0364490:CDS |
| AAGCTCCTGATAGCACTAAA+TGG | 0.320337 | 3_1:+57565246 | Msa0364490:CDS |
| GATACATTAACTGTCACTTT+TGG | 0.350344 | 3_1:-57566934 | None:intergenic |
| CTCTCTAGGACATGGGTGTT+TGG | 0.352855 | 3_1:+57565340 | Msa0364490:CDS |
| ACTGATAAACAAGAAAGATT+TGG | 0.358474 | 3_1:+57566893 | Msa0364490:CDS |
| AAAGAACTTCATCCTTGAAT+TGG | 0.360316 | 3_1:+57566461 | Msa0364490:CDS |
| TGGTGAGATTTGGTTTGAAA+AGG | 0.373936 | 3_1:+57565292 | Msa0364490:CDS |
| GTCAAATAGAGCTAGAGTTC+AGG | 0.400167 | 3_1:+57566483 | Msa0364490:CDS |
| GTACCTAATATACATTTAAA+GGG | 0.420366 | 3_1:+57566702 | Msa0364490:CDS |
| TTTACTCAAAATTACTCTCT+AGG | 0.430990 | 3_1:+57565326 | Msa0364490:CDS |
| ACGAGTCGTCGCCTTTCGGC+TGG | 0.436357 | 3_1:+57566813 | Msa0364490:CDS |
| TTGGTAGTGTTCAAATATAA+AGG | 0.440378 | 3_1:+57565359 | Msa0364490:CDS |
| ATACCGCTAAATTTCTTATG+TGG | 0.444922 | 3_1:-57565566 | None:intergenic |
| AGCTCTATTTGACCAATTCA+AGG | 0.446743 | 3_1:-57566473 | None:intergenic |
| TGAGACGAGTCGTCGCCTTT+CGG | 0.455188 | 3_1:+57566809 | Msa0364490:CDS |
| AGATTTGGTTTGAAAAGGGT+TGG | 0.470784 | 3_1:+57565297 | Msa0364490:CDS |
| AAGAATCTGGTGGTTCAGAT+TGG | 0.475382 | 3_1:+57566744 | Msa0364490:CDS |
| TGAGAACGAGGAGAAGAATC+TGG | 0.480602 | 3_1:+57566731 | Msa0364490:CDS |
| TGCAGTTGGTCTATCAAATC+CGG | 0.483535 | 3_1:+57565214 | Msa0364490:CDS |
| CTCGTCTCATACTCGTAAGA+AGG | 0.484642 | 3_1:-57566795 | None:intergenic |
| CGACTTGCTAGCAGATGATT+AGG | 0.494009 | 3_1:-57566559 | None:intergenic |
| CTAAATTTCTTATGTGGTCG+AGG | 0.494707 | 3_1:-57565560 | None:intergenic |
| GGTGAGATTTGGTTTGAAAA+GGG | 0.495938 | 3_1:+57565293 | Msa0364490:CDS |
| TTCTTCAAACTAATCTTCAA+AGG | 0.500110 | 3_1:+57564420 | Msa0364490:CDS |
| TCCTTGTTTGTAAGTGAAAG+TGG | 0.521025 | 3_1:+57566840 | Msa0364490:CDS |
| TTCAGATTGGAGAAAGATCA+TGG | 0.525950 | 3_1:+57566757 | Msa0364490:CDS |
| CAAAATTACTCTCTAGGACA+TGG | 0.526022 | 3_1:+57565332 | Msa0364490:CDS |
| TTTAAAGAAACGGATGGGAA+GGG | 0.534149 | 3_1:-57564393 | None:intergenic |
| GTCGTCGCCTTTCGGCTGGT+TGG | 0.538217 | 3_1:+57566817 | Msa0364490:CDS |
| CGACCACATAAGAAATTTAG+CGG | 0.542883 | 3_1:+57565563 | Msa0364490:CDS |
| GGTAGCATTTCTCCTTGCCA+TGG | 0.560827 | 3_1:-57564372 | None:intergenic |
| TACCTAATATACATTTAAAG+GGG | 0.579558 | 3_1:+57566703 | Msa0364490:CDS |
| AAAATTACTCTCTAGGACAT+GGG | 0.594435 | 3_1:+57565333 | Msa0364490:CDS |
| TCCACTTTCACTTACAAACA+AGG | 0.605224 | 3_1:-57566841 | None:intergenic |
| AAACTCCATCATCCATGGCA+AGG | 0.607415 | 3_1:+57564360 | None:intergenic |
| ACAAGGACCAACCAGCCGAA+AGG | 0.612648 | 3_1:-57566824 | None:intergenic |
| TCGTCTCATACTCGTAAGAA+GGG | 0.615477 | 3_1:-57566794 | None:intergenic |
| TCAGGAGCTTTGATCAACAC+CGG | 0.617194 | 3_1:-57565233 | None:intergenic |
| ACCTAATATACATTTAAAGG+GGG | 0.623633 | 3_1:+57566704 | Msa0364490:CDS |
| TTTACAAGAAGACATGCAGT+TGG | 0.624508 | 3_1:+57565200 | Msa0364490:CDS |
| AGTGAAAGTGGATTGCAACA+AGG | 0.630326 | 3_1:+57566852 | Msa0364490:CDS |
| GATGATGAGAATGACAATGT+TGG | 0.630769 | 3_1:+57565455 | Msa0364490:CDS |
| TCATCTGCTAGCAAGTCGGC+CGG | 0.639220 | 3_1:+57566564 | Msa0364490:CDS |
| CTAATCATCTGCTAGCAAGT+CGG | 0.639274 | 3_1:+57566560 | Msa0364490:CDS |
| GAACGAGGAGAAGAATCTGG+TGG | 0.714170 | 3_1:+57566734 | Msa0364490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTATTTTATTTTATTT+TGG | + | chr3_1:57565616-57565635 | Msa0364490:intron | 0.0% |
| !!! | ATTTTATTTTATTTTATTTT+GGG | + | chr3_1:57565617-57565636 | Msa0364490:intron | 0.0% |
| !!! | TATTTATTTATTTTCTTTGT+TGG | + | chr3_1:57564796-57564815 | Msa0364490:intron | 10.0% |
| !!! | GTTTTTTTTTTTTTTTTTGA+AGG | + | chr3_1:57565722-57565741 | Msa0364490:intron | 10.0% |
| !!! | GAAGAATAATTTTAAAGAAA+CGG | - | chr3_1:57564406-57564425 | None:intergenic | 15.0% |
| !! | TAATAAAAAGATATATATGC+TGG | - | chr3_1:57564480-57564499 | None:intergenic | 15.0% |
| !! | AAATAAATTGAGAAAAACAT+TGG | - | chr3_1:57564781-57564800 | None:intergenic | 15.0% |
| !!! | TATTTATTTATTTTCTTCGT+TGG | + | chr3_1:57564916-57564935 | Msa0364490:intron | 15.0% |
| !!! | TATTTATTTATTTTCTTCGT+TGG | + | chr3_1:57564916-57564935 | Msa0364490:intron | 15.0% |
| !! | ATTTATTGGAAAAAAATCAA+TGG | + | chr3_1:57565272-57565291 | Msa0364490:CDS | 15.0% |
| !!! | TTTTTTTTTTTTTTTGAAGG+AGG | + | chr3_1:57565725-57565744 | Msa0364490:intron | 15.0% |
| !!! | TTTTTTACTAAATTAGTTTC+TGG | + | chr3_1:57565996-57566015 | Msa0364490:intron | 15.0% |
| !!! | TAATATTTTTCTATTTGTTC+AGG | + | chr3_1:57566095-57566114 | Msa0364490:intron | 15.0% |
| !! | AAAACAAATAATTAAACTCT+TGG | - | chr3_1:57566399-57566418 | None:intergenic | 15.0% |
| !!! | ATAATTTTAAAGAAACGGAT+GGG | - | chr3_1:57564401-57564420 | None:intergenic | 20.0% |
| !!! | AATAATTTTAAAGAAACGGA+TGG | - | chr3_1:57564402-57564421 | None:intergenic | 20.0% |
| !! | ACTGGAATAATGTTTAATTA+AGG | + | chr3_1:57564643-57564662 | Msa0364490:intron | 20.0% |
| !!! | AAAAATTTAAGAAGCCTTTT+TGG | - | chr3_1:57565161-57565180 | None:intergenic | 20.0% |
| !! | GTCAAAAACATTATATTTAG+AGG | - | chr3_1:57565769-57565788 | None:intergenic | 20.0% |
| !!! | GTACGTAGTAATTTTTTTAT+TGG | + | chr3_1:57565914-57565933 | Msa0364490:intron | 20.0% |
| !! | TTTGTTGAACTAAAGATTAA+AGG | - | chr3_1:57566143-57566162 | None:intergenic | 20.0% |
| !! | TTACTACATTTATTCATTCA+TGG | + | chr3_1:57566605-57566624 | Msa0364490:intron | 20.0% |
| !! | TACTACATTTATTCATTCAT+GGG | + | chr3_1:57566606-57566625 | Msa0364490:intron | 20.0% |
| !! | GTACCTAATATACATTTAAA+GGG | + | chr3_1:57566702-57566721 | Msa0364490:CDS | 20.0% |
| !! | TACCTAATATACATTTAAAG+GGG | + | chr3_1:57566703-57566722 | Msa0364490:CDS | 20.0% |
| ! | TTCTTCAAACTAATCTTCAA+AGG | + | chr3_1:57564420-57564439 | Msa0364490:CDS | 25.0% |
| ! | GTTTAATTAAGGTAGTTACA+AGG | + | chr3_1:57564654-57564673 | Msa0364490:intron | 25.0% |
| !!! | CTTTTTGGTCATTTAACAAA+AGG | - | chr3_1:57565146-57565165 | None:intergenic | 25.0% |
| !! | CTTTTGTTAAATGACCAAAA+AGG | + | chr3_1:57565144-57565163 | Msa0364490:intron | 25.0% |
| ! | TGTCTTCTTGTAAACTTATT+TGG | - | chr3_1:57565194-57565213 | None:intergenic | 25.0% |
| ! | GCACTAAATGGAAAATTTAT+TGG | + | chr3_1:57565258-57565277 | Msa0364490:CDS | 25.0% |
| ! | AAAAAATCAATGGTGAGATT+TGG | + | chr3_1:57565282-57565301 | Msa0364490:CDS | 25.0% |
| ! | TTTACTCAAAATTACTCTCT+AGG | + | chr3_1:57565326-57565345 | Msa0364490:CDS | 25.0% |
| !!! | TTGGTAGTGTTCAAATATAA+AGG | + | chr3_1:57565359-57565378 | Msa0364490:CDS | 25.0% |
| ! | AAGTTTGATGTACTCATATT+TGG | + | chr3_1:57565389-57565408 | Msa0364490:CDS | 25.0% |
| ! | AAACTGTTAGTATTATGATG+TGG | + | chr3_1:57565866-57565885 | Msa0364490:intron | 25.0% |
| !!! | AGTAATTTAGTTCTTCAAGA+GGG | - | chr3_1:57565893-57565912 | None:intergenic | 25.0% |
| !!! | TAGTAATTTAGTTCTTCAAG+AGG | - | chr3_1:57565894-57565913 | None:intergenic | 25.0% |
| ! | CTAATTACATTCAAATCAGA+CGG | - | chr3_1:57566237-57566256 | None:intergenic | 25.0% |
| ! | GCATAATTATATTTGAGCTA+AGG | - | chr3_1:57566286-57566305 | None:intergenic | 25.0% |
| ! | AAGTAATTACATTCAAAGCA+CGG | - | chr3_1:57566310-57566329 | None:intergenic | 25.0% |
| !! | TGCTTTGAATGTAATTACTT+TGG | + | chr3_1:57566310-57566329 | Msa0364490:intron | 25.0% |
| ! | ACAAATAATTAAACTCTTGG+AGG | - | chr3_1:57566396-57566415 | None:intergenic | 25.0% |
| ! | TGTATGAGAATTGTGAAAAA+AGG | - | chr3_1:57566538-57566557 | None:intergenic | 25.0% |
| ! | ACTACATTTATTCATTCATG+GGG | + | chr3_1:57566607-57566626 | Msa0364490:intron | 25.0% |
| ! | TTATACTATTATCTATGCAG+CGG | + | chr3_1:57566679-57566698 | Msa0364490:intron | 25.0% |
| ! | GGTACCTAATATACATTTAA+AGG | + | chr3_1:57566701-57566720 | Msa0364490:CDS | 25.0% |
| ! | ACCTAATATACATTTAAAGG+GGG | + | chr3_1:57566704-57566723 | Msa0364490:CDS | 25.0% |
| ! | ACTGATAAACAAGAAAGATT+TGG | + | chr3_1:57566893-57566912 | Msa0364490:CDS | 25.0% |
| GAAGTCTGGATAGTAATAAT+AGG | - | chr3_1:57564458-57564477 | None:intergenic | 30.0% | |
| AAGCACTAGAAGTTTGATTA+GGG | + | chr3_1:57564601-57564620 | Msa0364490:intron | 30.0% | |
| TGATCTGTTAGTATTAGTAC+TGG | + | chr3_1:57564625-57564644 | Msa0364490:intron | 30.0% | |
| ! | CATTGGTTATTTGAAAGTCA+TGG | - | chr3_1:57564764-57564783 | None:intergenic | 30.0% |
| GATGTTTATGTTGACAAGTA+TGG | - | chr3_1:57564828-57564847 | None:intergenic | 30.0% | |
| GATGTTTATGTTGACAAGTA+TGG | - | chr3_1:57564828-57564847 | None:intergenic | 30.0% | |
| GATGTTTATGTTGACAAGTA+TGG | - | chr3_1:57564828-57564847 | None:intergenic | 30.0% | |
| ! | ATTTTCCATTTAGTGCTATC+AGG | - | chr3_1:57565254-57565273 | None:intergenic | 30.0% |
| !! | AAAATTACTCTCTAGGACAT+GGG | + | chr3_1:57565333-57565352 | Msa0364490:CDS | 30.0% |
| ! | CACTTGAGATTTTAGATGAA+TGG | + | chr3_1:57565495-57565514 | Msa0364490:CDS | 30.0% |
| !! | ATCAGAAGAGTGCTAAAAAA+AGG | + | chr3_1:57565522-57565541 | Msa0364490:CDS | 30.0% |
| ATACCGCTAAATTTCTTATG+TGG | - | chr3_1:57565569-57565588 | None:intergenic | 30.0% | |
| TGTTGACACTTCATTCTAAA+TGG | - | chr3_1:57565668-57565687 | None:intergenic | 30.0% | |
| CTAAAGATTAAAGGACTTGA+AGG | - | chr3_1:57566134-57566153 | None:intergenic | 30.0% | |
| ! | CGTCTGATTTGAATGTAATT+AGG | + | chr3_1:57566235-57566254 | Msa0364490:intron | 30.0% |
| TATATTTGAGCTAAGGTTAG+TGG | - | chr3_1:57566279-57566298 | None:intergenic | 30.0% | |
| !!! | GATGTTAATTTGCTGTTTTC+AGG | - | chr3_1:57566347-57566366 | None:intergenic | 30.0% |
| ! | TATTTTCCACACATATATGC+AGG | + | chr3_1:57566418-57566437 | Msa0364490:intron | 30.0% |
| AAAGAACTTCATCCTTGAAT+TGG | + | chr3_1:57566461-57566480 | Msa0364490:CDS | 30.0% | |
| TATACTATTATCTATGCAGC+GGG | + | chr3_1:57566680-57566699 | Msa0364490:intron | 30.0% | |
| ACCCCCTTTAAATGTATATT+AGG | - | chr3_1:57566708-57566727 | None:intergenic | 30.0% | |
| TTTAAAGAAACGGATGGGAA+GGG | - | chr3_1:57564396-57564415 | None:intergenic | 35.0% | |
| !! | TTTTAAAGAAACGGATGGGA+AGG | - | chr3_1:57564397-57564416 | None:intergenic | 35.0% |
| AGATATATATGCTGGAAGTC+TGG | - | chr3_1:57564472-57564491 | None:intergenic | 35.0% | |
| AATGTTGTAACTGCAACTGT+TGG | - | chr3_1:57564507-57564526 | None:intergenic | 35.0% | |
| GCTTGCATGTATATATGTGT+AGG | - | chr3_1:57564585-57564604 | None:intergenic | 35.0% | |
| CAAGCACTAGAAGTTTGATT+AGG | + | chr3_1:57564600-57564619 | Msa0364490:intron | 35.0% | |
| !! | TGAGCGTTTGTATTTCTAGA+AGG | + | chr3_1:57564865-57564884 | Msa0364490:intron | 35.0% |
| !! | TGAGCGTTTGTATTTCTAGA+AGG | + | chr3_1:57564865-57564884 | Msa0364490:intron | 35.0% |
| !! | TGAGCGTTTGTATTTCTAGA+AGG | + | chr3_1:57564865-57564884 | Msa0364490:intron | 35.0% |
| TTTACAAGAAGACATGCAGT+TGG | + | chr3_1:57565200-57565219 | Msa0364490:CDS | 35.0% | |
| !! | TGGTGAGATTTGGTTTGAAA+AGG | + | chr3_1:57565292-57565311 | Msa0364490:CDS | 35.0% |
| !! | GGTGAGATTTGGTTTGAAAA+GGG | + | chr3_1:57565293-57565312 | Msa0364490:CDS | 35.0% |
| !! | AGATTTGGTTTGAAAAGGGT+TGG | + | chr3_1:57565297-57565316 | Msa0364490:CDS | 35.0% |
| !! | CAAAATTACTCTCTAGGACA+TGG | + | chr3_1:57565332-57565351 | Msa0364490:CDS | 35.0% |
| GATGATGAGAATGACAATGT+TGG | + | chr3_1:57565455-57565474 | Msa0364490:CDS | 35.0% | |
| CTAAATTTCTTATGTGGTCG+AGG | - | chr3_1:57565563-57565582 | None:intergenic | 35.0% | |
| CGACCACATAAGAAATTTAG+CGG | + | chr3_1:57565563-57565582 | Msa0364490:CDS | 35.0% | |
| !! | TGAAGTGTCAACAACACTTT+TGG | + | chr3_1:57565675-57565694 | Msa0364490:intron | 35.0% |
| !!! | TCAACAACACTTTTGGTTCA+TGG | + | chr3_1:57565682-57565701 | Msa0364490:intron | 35.0% |
| !!! | CACTTTTGGTTCATGGAATA+TGG | + | chr3_1:57565689-57565708 | Msa0364490:intron | 35.0% |
| AGCTCTATTTGACCAATTCA+AGG | - | chr3_1:57566476-57566495 | None:intergenic | 35.0% | |
| TGTGAAAAAAGGATTGCTTG+AGG | - | chr3_1:57566527-57566546 | None:intergenic | 35.0% | |
| TTCAGATTGGAGAAAGATCA+TGG | + | chr3_1:57566757-57566776 | Msa0364490:CDS | 35.0% | |
| ! | TCCTTGTTTGTAAGTGAAAG+TGG | + | chr3_1:57566840-57566859 | Msa0364490:CDS | 35.0% |
| TCCACTTTCACTTACAAACA+AGG | - | chr3_1:57566844-57566863 | None:intergenic | 35.0% | |
| ! | TGCAGTTGGTCTATCAAATC+CGG | + | chr3_1:57565214-57565233 | Msa0364490:CDS | 40.0% |
| AAGCTCCTGATAGCACTAAA+TGG | + | chr3_1:57565246-57565265 | Msa0364490:CDS | 40.0% | |
| TTCTCACCTGCATATATGTG+TGG | - | chr3_1:57566427-57566446 | None:intergenic | 40.0% | |
| GTCAAATAGAGCTAGAGTTC+AGG | + | chr3_1:57566483-57566502 | Msa0364490:CDS | 40.0% | |
| CTAATCATCTGCTAGCAAGT+CGG | + | chr3_1:57566560-57566579 | Msa0364490:CDS | 40.0% | |
| AATGTTGTGTTTGACCCTAC+CGG | - | chr3_1:57566586-57566605 | None:intergenic | 40.0% | |
| AAGAATCTGGTGGTTCAGAT+TGG | + | chr3_1:57566744-57566763 | Msa0364490:CDS | 40.0% | |
| TCGTCTCATACTCGTAAGAA+GGG | - | chr3_1:57566797-57566816 | None:intergenic | 40.0% | |
| !! | AGTGAAAGTGGATTGCAACA+AGG | + | chr3_1:57566852-57566871 | Msa0364490:CDS | 40.0% |
| ! | TCAGGAGCTTTGATCAACAC+CGG | - | chr3_1:57565236-57565255 | None:intergenic | 45.0% |
| !! | CGACTTGCTAGCAGATGATT+AGG | - | chr3_1:57566562-57566581 | None:intergenic | 45.0% |
| AAAGGGGGTTATTGAGAACG+AGG | + | chr3_1:57566719-57566738 | Msa0364490:CDS | 45.0% | |
| TGAGAACGAGGAGAAGAATC+TGG | + | chr3_1:57566731-57566750 | Msa0364490:CDS | 45.0% | |
| CTCGTCTCATACTCGTAAGA+AGG | - | chr3_1:57566798-57566817 | None:intergenic | 45.0% | |
| !! | TAAATAAATAAATTAACAAA+AGG | - | chr3_1:57564906-57564925 | None:intergenic | 5.0% |
| !! | TAAATAAATAAATTAACAAA+AGG | - | chr3_1:57564906-57564925 | None:intergenic | 5.0% |
| !! | CTCTCTAGGACATGGGTGTT+TGG | + | chr3_1:57565340-57565359 | Msa0364490:CDS | 50.0% |
| GAACGAGGAGAAGAATCTGG+TGG | + | chr3_1:57566734-57566753 | Msa0364490:CDS | 50.0% | |
| TCATCTGCTAGCAAGTCGGC+CGG | + | chr3_1:57566564-57566583 | Msa0364490:CDS | 55.0% | |
| TGAGACGAGTCGTCGCCTTT+CGG | + | chr3_1:57566809-57566828 | Msa0364490:CDS | 55.0% | |
| ACAAGGACCAACCAGCCGAA+AGG | - | chr3_1:57566827-57566846 | None:intergenic | 55.0% | |
| TGCTAGCAAGTCGGCCGGTA+GGG | + | chr3_1:57566569-57566588 | Msa0364490:intron | 60.0% | |
| CTGCTAGCAAGTCGGCCGGT+AGG | + | chr3_1:57566568-57566587 | Msa0364490:intron | 65.0% | |
| ACGAGTCGTCGCCTTTCGGC+TGG | + | chr3_1:57566813-57566832 | Msa0364490:CDS | 65.0% | |
| GTCGTCGCCTTTCGGCTGGT+TGG | + | chr3_1:57566817-57566836 | Msa0364490:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 57564374 | 57566950 | 57564374 | ID=Msa0364490;Name=Msa0364490 |
| chr3_1 | mRNA | 57564374 | 57566950 | 57564374 | ID=Msa0364490-mRNA-1;Parent=Msa0364490;Name=Msa0364490-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|4|0|289 |
| chr3_1 | exon | 57564374 | 57564445 | 57564374 | ID=Msa0364490-mRNA-1:exon:10804;Parent=Msa0364490-mRNA-1 |
| chr3_1 | exon | 57565185 | 57565584 | 57565185 | ID=Msa0364490-mRNA-1:exon:10805;Parent=Msa0364490-mRNA-1 |
| chr3_1 | exon | 57566440 | 57566585 | 57566440 | ID=Msa0364490-mRNA-1:exon:10806;Parent=Msa0364490-mRNA-1 |
| chr3_1 | exon | 57566699 | 57566950 | 57566699 | ID=Msa0364490-mRNA-1:exon:10807;Parent=Msa0364490-mRNA-1 |
| chr3_1 | CDS | 57564374 | 57564445 | 57564374 | ID=Msa0364490-mRNA-1:cds;Parent=Msa0364490-mRNA-1 |
| chr3_1 | CDS | 57565185 | 57565584 | 57565185 | ID=Msa0364490-mRNA-1:cds;Parent=Msa0364490-mRNA-1 |
| chr3_1 | CDS | 57566440 | 57566585 | 57566440 | ID=Msa0364490-mRNA-1:cds;Parent=Msa0364490-mRNA-1 |
| chr3_1 | CDS | 57566699 | 57566950 | 57566699 | ID=Msa0364490-mRNA-1:cds;Parent=Msa0364490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
