AlfalfaGEDB | Msa0364820

M. sativa cultivar zhongmu-4 / Msa0364820

KEGG: K09326
GO: GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007163 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010075 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030010 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048608 GO:0048638 GO:0048646 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048859 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090451 GO:0090691 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0364820	XP_024626123.1	59.574	141	42	2	1	141	35	160	5.57e-36	138

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0364820	sp\|A3BKM2\|WOX13_ORYSJ	72.222	72	20	0	3	74	126	197	5.50e-29	110

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0364820	U5LKY5	59.574	141	42	2	1	141	35	160	2.66e-36	138

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TFs/TRs:

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Gene ID	Type	Classification
Msa0364820	TF	HB-WOX

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0364820	MtrunA17_Chr7g0223471	59.574	141	42	2	1	141	35	160	5.12e-40	138
Msa0364820	MtrunA17_Chr2g0283141	72.222	72	20	0	3	74	45	116	1.23e-28	108
Msa0364820	MtrunA17_Chr4g0046231	70.423	71	18	2	32	100	1	70	1.18e-23	94.0
Msa0364820	MtrunA17_Chr6g0460691	58.333	60	25	0	5	64	24	83	7.29e-20	83.2
Msa0364820	MtrunA17_Chr7g0254251	56.667	60	26	0	3	62	18	77	5.38e-18	77.8
Msa0364820	MtrunA17_Chr5g0436661	45.161	62	34	0	13	74	33	94	1.51e-12	61.6
Msa0364820	MtrunA17_Chr1g0153171	37.363	91	52	1	13	98	90	180	3.88e-12	61.6
Msa0364820	MtrunA17_Chr4g0043891	41.935	62	36	0	13	74	8	69	7.45e-11	58.2
Msa0364820	MtrunA17_Chr4g0031341	41.935	62	36	0	13	74	25	86	9.57e-11	57.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0364820	AT2G33880.1	65.823	79	27	0	1	79	43	121	1.04e-28	108
Msa0364820	AT2G33880.2	65.823	79	27	0	1	79	43	121	1.43e-28	108
Msa0364820	AT5G45980.1	57.500	80	33	1	3	82	45	123	5.53e-25	97.4
Msa0364820	AT5G17810.3	58.621	58	24	0	7	64	15	72	5.05e-18	78.2
Msa0364820	AT5G17810.1	58.621	58	24	0	7	64	15	72	5.17e-18	78.2
Msa0364820	AT5G17810.2	58.621	58	24	0	7	64	15	72	5.17e-18	78.2
Msa0364820	AT3G03660.1	58.182	55	23	0	10	64	30	84	6.77e-18	77.8
Msa0364820	AT3G03660.2	58.182	55	23	0	10	64	30	84	1.02e-17	77.8
Msa0364820	AT3G03660.4	58.182	55	23	0	10	64	30	84	1.85e-17	77.0
Msa0364820	AT3G03660.3	58.182	55	23	0	10	64	30	84	2.36e-17	77.0

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Find 30 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAATTCACGAACGTTAAA+AGG	0.254042	3_1:-58339736	None:intergenic
AGCCCTCTTCAACTCAGAGA+TGG	0.607398	3_1:+58339050	Msa0364820:CDS
ATACAGATTTGCTCAAGCTT+TGG	0.364320	3_1:-58339021	None:intergenic
ATCTTCTCAATCTCATCTCT+TGG	0.466304	3_1:-58339081	None:intergenic
ATTTGTGTGAGAGAGTTATT+AGG	0.365608	3_1:-58339240	None:intergenic
CACCATCTCTGAGTTGAAGA+GGG	0.555445	3_1:-58339052	None:intergenic
CATTCATCGGTTAGAACCAG+GGG	0.647474	3_1:-58339794	None:intergenic
CCATTCATCGGTTAGAACCA+GGG	0.622177	3_1:-58339795	None:intergenic
CCCATTCATCGGTTAGAACC+AGG	0.458907	3_1:-58339796	None:intergenic
CGTGAACAATTACAAGAATT+TGG	0.113481	3_1:+58339105	Msa0364820:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CGTGAACAATTACAAGAATT+TGG	+	chr3_1:58339105-58339124	Msa0364820:CDS	30.0%
ATTTGTGTGAGAGAGTTATT+AGG	-	chr3_1:58339243-58339262	None:intergenic	30.0%
GAAAGATGATGAAGATGATT+TGG	-	chr3_1:58339280-58339299	None:intergenic	30.0%
TGACATATTATGATTTCACC+GGG	-	chr3_1:58339324-58339343	None:intergenic	30.0%
GTCATTAATGATCAACTTCA+AGG	+	chr3_1:58339340-58339359	Msa0364820:intron	30.0%
TAATATCAGCATTTGCAAAG+TGG	+	chr3_1:58339367-58339386	Msa0364820:intron	30.0%
AAATGTAGGGTGATTACTAA+TGG	+	chr3_1:58339688-58339707	Msa0364820:intron	30.0%
AACAATTCACGAACGTTAAA+AGG	-	chr3_1:58339739-58339758	None:intergenic	30.0%
TTTAACGTTCGTGAATTGTT+TGG	+	chr3_1:58339739-58339758	Msa0364820:CDS	30.0%
CGTGAACAATTACAAGAATT+TGG	+	chr3_1:58339105-58339124	Msa0364820:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	58338976	58339813	58338976	ID=Msa0364820;Name=Msa0364820
chr3_1	mRNA	58338976	58339813	58338976	ID=Msa0364820-mRNA-1;Parent=Msa0364820;Name=Msa0364820-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0\|0\|0\|1\|1\|0.5\|2\|0\|142
chr3_1	exon	58338976	58339324	58338976	ID=Msa0364820-mRNA-1:exon:11023;Parent=Msa0364820-mRNA-1
chr3_1	exon	58339734	58339813	58339734	ID=Msa0364820-mRNA-1:exon:11024;Parent=Msa0364820-mRNA-1
chr3_1	CDS	58338976	58339324	58338976	ID=Msa0364820-mRNA-1:cds;Parent=Msa0364820-mRNA-1
chr3_1	CDS	58339734	58339813	58339734	ID=Msa0364820-mRNA-1:cds;Parent=Msa0364820-mRNA-1

Gene Sequence

>Msa0364820

GGAGATGCTGAAGAGAGAACTTCTCAACTAAAGCCAAGACGGAATCCAAAGCTTGAGCAAATCTGTATTCTTGAAGCCCTCTTCAACTCAGAGATGGTGAATCCACCAAGAGATGAGATTGAGAAGATACGTGAACAATTACAAGAATTTGGGCAACTTGGTGATGCTAGTGTCTTTTACTGGTTTCAAAACCGCAAGTCCATAAGCAGACAAAAGAAAAGAATCCCCTACAACAAGAGACCAGAAACACAACCAAATGCAACTCCTAATAACTCTCTCACACAAATTAATACACCTCCTTCCAAATCATCTTCATCATCTTTCATTGATCATCAAAAAGCCTCTCCCGGGCCTTTTAACGTTCGTGAATTGTTTGGTGATGAAGCAGTTCTATTTGACTCCTTTGGTACCCCTGGTTCTAACCGATGA

Protein sequence

>Msa0364820

GDAEERTSQLKPRRNPKLEQICILEALFNSEMVNPPRDEIEKIREQLQEFGQLGDASVFYWFQNRKSISRQKKRIPYNKRPETQPNATPNNSLTQINTPPSKSSSSSFIDHQKASPGPFNVRELFGDEAVLFDSFGTPGSNR*