Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364820 | XP_024626123.1 | 59.574 | 141 | 42 | 2 | 1 | 141 | 35 | 160 | 5.57e-36 | 138 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364820 | sp|A3BKM2|WOX13_ORYSJ | 72.222 | 72 | 20 | 0 | 3 | 74 | 126 | 197 | 5.50e-29 | 110 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364820 | U5LKY5 | 59.574 | 141 | 42 | 2 | 1 | 141 | 35 | 160 | 2.66e-36 | 138 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0364820 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364820 | MtrunA17_Chr7g0223471 | 59.574 | 141 | 42 | 2 | 1 | 141 | 35 | 160 | 5.12e-40 | 138 |
| Msa0364820 | MtrunA17_Chr2g0283141 | 72.222 | 72 | 20 | 0 | 3 | 74 | 45 | 116 | 1.23e-28 | 108 |
| Msa0364820 | MtrunA17_Chr4g0046231 | 70.423 | 71 | 18 | 2 | 32 | 100 | 1 | 70 | 1.18e-23 | 94.0 |
| Msa0364820 | MtrunA17_Chr6g0460691 | 58.333 | 60 | 25 | 0 | 5 | 64 | 24 | 83 | 7.29e-20 | 83.2 |
| Msa0364820 | MtrunA17_Chr7g0254251 | 56.667 | 60 | 26 | 0 | 3 | 62 | 18 | 77 | 5.38e-18 | 77.8 |
| Msa0364820 | MtrunA17_Chr5g0436661 | 45.161 | 62 | 34 | 0 | 13 | 74 | 33 | 94 | 1.51e-12 | 61.6 |
| Msa0364820 | MtrunA17_Chr1g0153171 | 37.363 | 91 | 52 | 1 | 13 | 98 | 90 | 180 | 3.88e-12 | 61.6 |
| Msa0364820 | MtrunA17_Chr4g0043891 | 41.935 | 62 | 36 | 0 | 13 | 74 | 8 | 69 | 7.45e-11 | 58.2 |
| Msa0364820 | MtrunA17_Chr4g0031341 | 41.935 | 62 | 36 | 0 | 13 | 74 | 25 | 86 | 9.57e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364820 | AT2G33880.1 | 65.823 | 79 | 27 | 0 | 1 | 79 | 43 | 121 | 1.04e-28 | 108 |
| Msa0364820 | AT2G33880.2 | 65.823 | 79 | 27 | 0 | 1 | 79 | 43 | 121 | 1.43e-28 | 108 |
| Msa0364820 | AT5G45980.1 | 57.500 | 80 | 33 | 1 | 3 | 82 | 45 | 123 | 5.53e-25 | 97.4 |
| Msa0364820 | AT5G17810.3 | 58.621 | 58 | 24 | 0 | 7 | 64 | 15 | 72 | 5.05e-18 | 78.2 |
| Msa0364820 | AT5G17810.1 | 58.621 | 58 | 24 | 0 | 7 | 64 | 15 | 72 | 5.17e-18 | 78.2 |
| Msa0364820 | AT5G17810.2 | 58.621 | 58 | 24 | 0 | 7 | 64 | 15 | 72 | 5.17e-18 | 78.2 |
| Msa0364820 | AT3G03660.1 | 58.182 | 55 | 23 | 0 | 10 | 64 | 30 | 84 | 6.77e-18 | 77.8 |
| Msa0364820 | AT3G03660.2 | 58.182 | 55 | 23 | 0 | 10 | 64 | 30 | 84 | 1.02e-17 | 77.8 |
| Msa0364820 | AT3G03660.4 | 58.182 | 55 | 23 | 0 | 10 | 64 | 30 | 84 | 1.85e-17 | 77.0 |
| Msa0364820 | AT3G03660.3 | 58.182 | 55 | 23 | 0 | 10 | 64 | 30 | 84 | 2.36e-17 | 77.0 |
| Msa0364820 | AT2G17950.1 | 41.111 | 90 | 50 | 2 | 9 | 97 | 34 | 121 | 1.70e-14 | 68.9 |
| Msa0364820 | AT3G11260.1 | 45.161 | 62 | 34 | 0 | 13 | 74 | 24 | 85 | 2.43e-12 | 61.6 |
| Msa0364820 | AT1G46480.2 | 46.774 | 62 | 33 | 0 | 13 | 74 | 90 | 151 | 3.72e-12 | 61.2 |
| Msa0364820 | AT5G05770.1 | 38.667 | 75 | 42 | 1 | 13 | 83 | 29 | 103 | 6.21e-12 | 59.3 |
| Msa0364820 | AT1G46480.1 | 46.774 | 62 | 33 | 0 | 13 | 74 | 90 | 151 | 1.21e-11 | 60.5 |
Find 30 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCATTTGGTTGTGTTTC+TGG | 0.090039 | 3_1:-58339216 | None:intergenic |
| CGTGAACAATTACAAGAATT+TGG | 0.113481 | 3_1:+58339105 | Msa0364820:CDS |
| AACAATTCACGAACGTTAAA+AGG | 0.254042 | 3_1:-58339736 | None:intergenic |
| TGTTTCTGGTCTCTTGTTGT+AGG | 0.261301 | 3_1:-58339202 | None:intergenic |
| GAAAGATGATGAAGATGATT+TGG | 0.341139 | 3_1:-58339277 | None:intergenic |
| ATACAGATTTGCTCAAGCTT+TGG | 0.364320 | 3_1:-58339021 | None:intergenic |
| ATTTGTGTGAGAGAGTTATT+AGG | 0.365608 | 3_1:-58339240 | None:intergenic |
| GCAGTTCTATTTGACTCCTT+TGG | 0.365617 | 3_1:+58339769 | Msa0364820:CDS |
| GTGAACAATTACAAGAATTT+GGG | 0.368349 | 3_1:+58339106 | Msa0364820:CDS |
| TTTGACTCCTTTGGTACCCC+TGG | 0.401442 | 3_1:+58339778 | Msa0364820:CDS |
| TTTAACGTTCGTGAATTGTT+TGG | 0.410393 | 3_1:+58339739 | Msa0364820:CDS |
| GTTTCTGGTCTCTTGTTGTA+GGG | 0.424258 | 3_1:-58339201 | None:intergenic |
| TCAAGCTTTGGATTCCGTCT+TGG | 0.432449 | 3_1:-58339009 | None:intergenic |
| TTCTCAATCTCATCTCTTGG+TGG | 0.448475 | 3_1:-58339078 | None:intergenic |
| CCCATTCATCGGTTAGAACC+AGG | 0.458907 | 3_1:-58339796 | None:intergenic |
| ATCTTCTCAATCTCATCTCT+TGG | 0.466304 | 3_1:-58339081 | None:intergenic |
| TTACAAGAATTTGGGCAACT+TGG | 0.466911 | 3_1:+58339114 | Msa0364820:CDS |
| GAGTTATTAGGAGTTGCATT+TGG | 0.477754 | 3_1:-58339228 | None:intergenic |
| TATTATGATTTCACCGGGAG+AGG | 0.484380 | 3_1:-58339316 | None:intergenic |
| GATGATGAAGATGATTTGGA+AGG | 0.542768 | 3_1:-58339273 | None:intergenic |
| CACCATCTCTGAGTTGAAGA+GGG | 0.555445 | 3_1:-58339052 | None:intergenic |
| TCACCATCTCTGAGTTGAAG+AGG | 0.563521 | 3_1:-58339053 | None:intergenic |
| TTTCTGGTCTCTTGTTGTAG+GGG | 0.566911 | 3_1:-58339200 | None:intergenic |
| CTTCTCAACTAAAGCCAAGA+CGG | 0.582479 | 3_1:+58338995 | Msa0364820:CDS |
| GATGAAGATGATTTGGAAGG+AGG | 0.596007 | 3_1:-58339270 | None:intergenic |
| TTTGTCTGCTTATGGACTTG+CGG | 0.603126 | 3_1:-58339167 | None:intergenic |
| AGCCCTCTTCAACTCAGAGA+TGG | 0.607398 | 3_1:+58339050 | Msa0364820:CDS |
| CCATTCATCGGTTAGAACCA+GGG | 0.622177 | 3_1:-58339795 | None:intergenic |
| GTTAGAACCAGGGGTACCAA+AGG | 0.626698 | 3_1:-58339785 | None:intergenic |
| CATTCATCGGTTAGAACCAG+GGG | 0.647474 | 3_1:-58339794 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTTCTAATTAAATACAAA+TGG | + | chr3_1:58339408-58339427 | Msa0364820:intron | 15.0% |
| !!! | TAGTTCTAATTAAATACAAA+TGG | + | chr3_1:58339408-58339427 | Msa0364820:intron | 15.0% |
| !! | TTATGTGTTATATTATTCCA+TGG | + | chr3_1:58339552-58339571 | Msa0364820:intron | 20.0% |
| !! | TTATGTGTTATATTATTCCA+TGG | + | chr3_1:58339552-58339571 | Msa0364820:intron | 20.0% |
| ! | GTGAACAATTACAAGAATTT+GGG | + | chr3_1:58339106-58339125 | Msa0364820:CDS | 25.0% |
| ! | ATGACATATTATGATTTCAC+CGG | - | chr3_1:58339325-58339344 | None:intergenic | 25.0% |
| ! | AACTGAATTCAAATTCTAGT+TGG | + | chr3_1:58339440-58339459 | Msa0364820:intron | 25.0% |
| ! | TCAAAAATGTAAGTAAAGTC+TGG | - | chr3_1:58339485-58339504 | None:intergenic | 25.0% |
| !! | GAACTAGGTAATTTAAAGTT+TGG | - | chr3_1:58339513-58339532 | None:intergenic | 25.0% |
| !!! | TAATCACATTTTTTTCAGGA+AGG | - | chr3_1:58339535-58339554 | None:intergenic | 25.0% |
| !!! | CACATAATCACATTTTTTTC+AGG | - | chr3_1:58339539-58339558 | None:intergenic | 25.0% |
| !! | TAGTTTATGTTTGTGTTTTC+AGG | + | chr3_1:58339601-58339620 | Msa0364820:intron | 25.0% |
| ! | GTGAACAATTACAAGAATTT+GGG | + | chr3_1:58339106-58339125 | Msa0364820:CDS | 25.0% |
| ! | ATGACATATTATGATTTCAC+CGG | - | chr3_1:58339325-58339344 | None:intergenic | 25.0% |
| ! | AACTGAATTCAAATTCTAGT+TGG | + | chr3_1:58339440-58339459 | Msa0364820:intron | 25.0% |
| ! | TCAAAAATGTAAGTAAAGTC+TGG | - | chr3_1:58339485-58339504 | None:intergenic | 25.0% |
| !! | GAACTAGGTAATTTAAAGTT+TGG | - | chr3_1:58339513-58339532 | None:intergenic | 25.0% |
| !!! | TAATCACATTTTTTTCAGGA+AGG | - | chr3_1:58339535-58339554 | None:intergenic | 25.0% |
| !!! | CACATAATCACATTTTTTTC+AGG | - | chr3_1:58339539-58339558 | None:intergenic | 25.0% |
| !! | TAGTTTATGTTTGTGTTTTC+AGG | + | chr3_1:58339601-58339620 | Msa0364820:intron | 25.0% |
| CGTGAACAATTACAAGAATT+TGG | + | chr3_1:58339105-58339124 | Msa0364820:CDS | 30.0% | |
| ! | TCTTTTCTTTTGTCTGCTTA+TGG | - | chr3_1:58339178-58339197 | None:intergenic | 30.0% |
| ATTTGTGTGAGAGAGTTATT+AGG | - | chr3_1:58339243-58339262 | None:intergenic | 30.0% | |
| GAAAGATGATGAAGATGATT+TGG | - | chr3_1:58339280-58339299 | None:intergenic | 30.0% | |
| TGACATATTATGATTTCACC+GGG | - | chr3_1:58339324-58339343 | None:intergenic | 30.0% | |
| GTCATTAATGATCAACTTCA+AGG | + | chr3_1:58339340-58339359 | Msa0364820:intron | 30.0% | |
| TAATATCAGCATTTGCAAAG+TGG | + | chr3_1:58339367-58339386 | Msa0364820:intron | 30.0% | |
| !!! | ATTTTTTTCAGGAAGGAACT+AGG | - | chr3_1:58339528-58339547 | None:intergenic | 30.0% |
| AAATGTAGGGTGATTACTAA+TGG | + | chr3_1:58339688-58339707 | Msa0364820:intron | 30.0% | |
| AACAATTCACGAACGTTAAA+AGG | - | chr3_1:58339739-58339758 | None:intergenic | 30.0% | |
| TTTAACGTTCGTGAATTGTT+TGG | + | chr3_1:58339739-58339758 | Msa0364820:CDS | 30.0% | |
| CGTGAACAATTACAAGAATT+TGG | + | chr3_1:58339105-58339124 | Msa0364820:CDS | 30.0% | |
| ! | TCTTTTCTTTTGTCTGCTTA+TGG | - | chr3_1:58339178-58339197 | None:intergenic | 30.0% |
| ATTTGTGTGAGAGAGTTATT+AGG | - | chr3_1:58339243-58339262 | None:intergenic | 30.0% | |
| GAAAGATGATGAAGATGATT+TGG | - | chr3_1:58339280-58339299 | None:intergenic | 30.0% | |
| TGACATATTATGATTTCACC+GGG | - | chr3_1:58339324-58339343 | None:intergenic | 30.0% | |
| GTCATTAATGATCAACTTCA+AGG | + | chr3_1:58339340-58339359 | Msa0364820:intron | 30.0% | |
| TAATATCAGCATTTGCAAAG+TGG | + | chr3_1:58339367-58339386 | Msa0364820:intron | 30.0% | |
| !!! | ATTTTTTTCAGGAAGGAACT+AGG | - | chr3_1:58339528-58339547 | None:intergenic | 30.0% |
| AAATGTAGGGTGATTACTAA+TGG | + | chr3_1:58339688-58339707 | Msa0364820:intron | 30.0% | |
| AACAATTCACGAACGTTAAA+AGG | - | chr3_1:58339739-58339758 | None:intergenic | 30.0% | |
| TTTAACGTTCGTGAATTGTT+TGG | + | chr3_1:58339739-58339758 | Msa0364820:CDS | 30.0% | |
| ! | ATACAGATTTGCTCAAGCTT+TGG | - | chr3_1:58339024-58339043 | None:intergenic | 35.0% |
| ATCTTCTCAATCTCATCTCT+TGG | - | chr3_1:58339084-58339103 | None:intergenic | 35.0% | |
| TTACAAGAATTTGGGCAACT+TGG | + | chr3_1:58339114-58339133 | Msa0364820:CDS | 35.0% | |
| GAGTTATTAGGAGTTGCATT+TGG | - | chr3_1:58339231-58339250 | None:intergenic | 35.0% | |
| ! | GATGATGAAGATGATTTGGA+AGG | - | chr3_1:58339276-58339295 | None:intergenic | 35.0% |
| ACTAAATGAAGTCATGCACA+TGG | - | chr3_1:58339585-58339604 | None:intergenic | 35.0% | |
| TGTGTGTGTTTGTCAAGTTT+CGG | + | chr3_1:58339646-58339665 | Msa0364820:intron | 35.0% | |
| AAGATGGTATGGCAAAATGT+AGG | + | chr3_1:58339674-58339693 | Msa0364820:intron | 35.0% | |
| AGATGGTATGGCAAAATGTA+GGG | + | chr3_1:58339675-58339694 | Msa0364820:intron | 35.0% | |
| ! | ATACAGATTTGCTCAAGCTT+TGG | - | chr3_1:58339024-58339043 | None:intergenic | 35.0% |
| ATCTTCTCAATCTCATCTCT+TGG | - | chr3_1:58339084-58339103 | None:intergenic | 35.0% | |
| TTACAAGAATTTGGGCAACT+TGG | + | chr3_1:58339114-58339133 | Msa0364820:CDS | 35.0% | |
| GAGTTATTAGGAGTTGCATT+TGG | - | chr3_1:58339231-58339250 | None:intergenic | 35.0% | |
| ! | GATGATGAAGATGATTTGGA+AGG | - | chr3_1:58339276-58339295 | None:intergenic | 35.0% |
| ACTAAATGAAGTCATGCACA+TGG | - | chr3_1:58339585-58339604 | None:intergenic | 35.0% | |
| TGTGTGTGTTTGTCAAGTTT+CGG | + | chr3_1:58339646-58339665 | Msa0364820:intron | 35.0% | |
| AAGATGGTATGGCAAAATGT+AGG | + | chr3_1:58339674-58339693 | Msa0364820:intron | 35.0% | |
| AGATGGTATGGCAAAATGTA+GGG | + | chr3_1:58339675-58339694 | Msa0364820:intron | 35.0% | |
| CTTCTCAACTAAAGCCAAGA+CGG | + | chr3_1:58338995-58339014 | Msa0364820:CDS | 40.0% | |
| TTCTCAATCTCATCTCTTGG+TGG | - | chr3_1:58339081-58339100 | None:intergenic | 40.0% | |
| ! | GTGATGCTAGTGTCTTTTAC+TGG | + | chr3_1:58339136-58339155 | Msa0364820:CDS | 40.0% |
| TTTGTCTGCTTATGGACTTG+CGG | - | chr3_1:58339170-58339189 | None:intergenic | 40.0% | |
| ! | TTTCTGGTCTCTTGTTGTAG+GGG | - | chr3_1:58339203-58339222 | None:intergenic | 40.0% |
| !! | GTTTCTGGTCTCTTGTTGTA+GGG | - | chr3_1:58339204-58339223 | None:intergenic | 40.0% |
| !! | TGTTTCTGGTCTCTTGTTGT+AGG | - | chr3_1:58339205-58339224 | None:intergenic | 40.0% |
| GTTGCATTTGGTTGTGTTTC+TGG | - | chr3_1:58339219-58339238 | None:intergenic | 40.0% | |
| ! | GATGAAGATGATTTGGAAGG+AGG | - | chr3_1:58339273-58339292 | None:intergenic | 40.0% |
| TATTATGATTTCACCGGGAG+AGG | - | chr3_1:58339319-58339338 | None:intergenic | 40.0% | |
| GTGTTTGTCAAGTTTCGGTA+AGG | + | chr3_1:58339651-58339670 | Msa0364820:intron | 40.0% | |
| TCAAGTTTCGGTAAGGAAGA+TGG | + | chr3_1:58339658-58339677 | Msa0364820:intron | 40.0% | |
| TTTCGGTAAGGAAGATGGTA+TGG | + | chr3_1:58339663-58339682 | Msa0364820:intron | 40.0% | |
| GCAGTTCTATTTGACTCCTT+TGG | + | chr3_1:58339769-58339788 | Msa0364820:CDS | 40.0% | |
| CTTCTCAACTAAAGCCAAGA+CGG | + | chr3_1:58338995-58339014 | Msa0364820:CDS | 40.0% | |
| TTCTCAATCTCATCTCTTGG+TGG | - | chr3_1:58339081-58339100 | None:intergenic | 40.0% | |
| ! | GTGATGCTAGTGTCTTTTAC+TGG | + | chr3_1:58339136-58339155 | Msa0364820:CDS | 40.0% |
| TTTGTCTGCTTATGGACTTG+CGG | - | chr3_1:58339170-58339189 | None:intergenic | 40.0% | |
| ! | TTTCTGGTCTCTTGTTGTAG+GGG | - | chr3_1:58339203-58339222 | None:intergenic | 40.0% |
| !! | GTTTCTGGTCTCTTGTTGTA+GGG | - | chr3_1:58339204-58339223 | None:intergenic | 40.0% |
| !! | TGTTTCTGGTCTCTTGTTGT+AGG | - | chr3_1:58339205-58339224 | None:intergenic | 40.0% |
| GTTGCATTTGGTTGTGTTTC+TGG | - | chr3_1:58339219-58339238 | None:intergenic | 40.0% | |
| ! | GATGAAGATGATTTGGAAGG+AGG | - | chr3_1:58339273-58339292 | None:intergenic | 40.0% |
| TATTATGATTTCACCGGGAG+AGG | - | chr3_1:58339319-58339338 | None:intergenic | 40.0% | |
| GTGTTTGTCAAGTTTCGGTA+AGG | + | chr3_1:58339651-58339670 | Msa0364820:intron | 40.0% | |
| TCAAGTTTCGGTAAGGAAGA+TGG | + | chr3_1:58339658-58339677 | Msa0364820:intron | 40.0% | |
| TTTCGGTAAGGAAGATGGTA+TGG | + | chr3_1:58339663-58339682 | Msa0364820:intron | 40.0% | |
| GCAGTTCTATTTGACTCCTT+TGG | + | chr3_1:58339769-58339788 | Msa0364820:CDS | 40.0% | |
| !! | TCAAGCTTTGGATTCCGTCT+TGG | - | chr3_1:58339012-58339031 | None:intergenic | 45.0% |
| ! | CACCATCTCTGAGTTGAAGA+GGG | - | chr3_1:58339055-58339074 | None:intergenic | 45.0% |
| ! | TCACCATCTCTGAGTTGAAG+AGG | - | chr3_1:58339056-58339075 | None:intergenic | 45.0% |
| GATCATCAAAAAGCCTCTCC+CGG | + | chr3_1:58339303-58339322 | Msa0364820:CDS | 45.0% | |
| !! | TACTAATGGTGCCGTATTCG+AGG | + | chr3_1:58339702-58339721 | Msa0364820:intron | 45.0% |
| !! | TCAAGCTTTGGATTCCGTCT+TGG | - | chr3_1:58339012-58339031 | None:intergenic | 45.0% |
| ! | CACCATCTCTGAGTTGAAGA+GGG | - | chr3_1:58339055-58339074 | None:intergenic | 45.0% |
| ! | TCACCATCTCTGAGTTGAAG+AGG | - | chr3_1:58339056-58339075 | None:intergenic | 45.0% |
| GATCATCAAAAAGCCTCTCC+CGG | + | chr3_1:58339303-58339322 | Msa0364820:CDS | 45.0% | |
| !! | TACTAATGGTGCCGTATTCG+AGG | + | chr3_1:58339702-58339721 | Msa0364820:intron | 45.0% |
| AGCCCTCTTCAACTCAGAGA+TGG | + | chr3_1:58339050-58339069 | Msa0364820:CDS | 50.0% | |
| ATGCACATGGCACATGTCCA+TGG | - | chr3_1:58339572-58339591 | None:intergenic | 50.0% | |
| CCCTGCATGAACCTCGAATA+CGG | - | chr3_1:58339716-58339735 | None:intergenic | 50.0% | |
| CCGTATTCGAGGTTCATGCA+GGG | + | chr3_1:58339713-58339732 | Msa0364820:intron | 50.0% | |
| TTTGACTCCTTTGGTACCCC+TGG | + | chr3_1:58339778-58339797 | Msa0364820:CDS | 50.0% | |
| !! | GTTAGAACCAGGGGTACCAA+AGG | - | chr3_1:58339788-58339807 | None:intergenic | 50.0% |
| AGCCCTCTTCAACTCAGAGA+TGG | + | chr3_1:58339050-58339069 | Msa0364820:CDS | 50.0% | |
| ATGCACATGGCACATGTCCA+TGG | - | chr3_1:58339572-58339591 | None:intergenic | 50.0% | |
| CCCTGCATGAACCTCGAATA+CGG | - | chr3_1:58339716-58339735 | None:intergenic | 50.0% | |
| CCGTATTCGAGGTTCATGCA+GGG | + | chr3_1:58339713-58339732 | Msa0364820:intron | 50.0% | |
| TTTGACTCCTTTGGTACCCC+TGG | + | chr3_1:58339778-58339797 | Msa0364820:CDS | 50.0% | |
| !! | GTTAGAACCAGGGGTACCAA+AGG | - | chr3_1:58339788-58339807 | None:intergenic | 50.0% |
| GCCGTATTCGAGGTTCATGC+AGG | + | chr3_1:58339712-58339731 | Msa0364820:intron | 55.0% | |
| !! | ACCCCTGGTTCTAACCGATG+AGG | + | chr3_1:58339793-58339812 | Msa0364820:CDS | 55.0% |
| GCCGTATTCGAGGTTCATGC+AGG | + | chr3_1:58339712-58339731 | Msa0364820:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 58338976 | 58339813 | 58338976 | ID=Msa0364820;Name=Msa0364820 |
| chr3_1 | mRNA | 58338976 | 58339813 | 58338976 | ID=Msa0364820-mRNA-1;Parent=Msa0364820;Name=Msa0364820-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0|0|1|1|0.5|2|0|142 |
| chr3_1 | exon | 58338976 | 58339324 | 58338976 | ID=Msa0364820-mRNA-1:exon:11023;Parent=Msa0364820-mRNA-1 |
| chr3_1 | exon | 58339734 | 58339813 | 58339734 | ID=Msa0364820-mRNA-1:exon:11024;Parent=Msa0364820-mRNA-1 |
| chr3_1 | CDS | 58338976 | 58339324 | 58338976 | ID=Msa0364820-mRNA-1:cds;Parent=Msa0364820-mRNA-1 |
| chr3_1 | CDS | 58339734 | 58339813 | 58339734 | ID=Msa0364820-mRNA-1:cds;Parent=Msa0364820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
