AlfalfaGEDB | Msa0365060

M. sativa cultivar zhongmu-4 / Msa0365060

KEGG: K09422
GO: GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006935 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009856 GO:0009889 GO:0010183 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0048229 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051171 GO:0051239 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141
PFAM: PF13921.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0365060	XP_013460199.1	93.805	452	20	3	1	445	1	451	0.0	845

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0365060	sp\|Q9FY60\|MYB64_ARATH	39.073	453	187	13	23	442	16	412	2.01e-80	258

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0365060	A0A072V7R5	93.805	452	20	3	1	445	1	451	0.0	845

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0365060	TF	MYB

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0365060	MtrunA17_Chr3g0104491	91.822	269	15	2	184	445	17	285	1.63e-169	477
Msa0365060	MtrunA17_Chr3g0104501	95.676	185	7	1	1	185	1	184	5.23e-129	371
Msa0365060	MtrunA17_Chr5g0429661	48.537	410	140	15	5	409	11	354	4.62e-110	328
Msa0365060	MtrunA17_Chr3g0117511	42.647	272	113	7	28	283	92	336	9.45e-60	201
Msa0365060	MtrunA17_Chr4g0058991	65.649	131	40	1	132	262	207	332	2.97e-57	195
Msa0365060	MtrunA17_Chr7g0228531	56.204	137	54	3	130	266	216	346	4.84e-49	172
Msa0365060	MtrunA17_Chr7g0228481	52.555	137	59	3	130	266	216	346	2.49e-43	157
Msa0365060	MtrunA17_Chr7g0238631	60.714	112	44	0	123	234	102	213	7.10e-41	153
Msa0365060	MtrunA17_Chr1g0177901	53.279	122	53	1	145	266	5	122	9.60e-41	144
Msa0365060	MtrunA17_Chr7g0228401	32.394	284	139	5	17	266	143	407	1.15e-40	151

Showing 1 to 10 of 164 entries

Previous1 2 3 4 5…17Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0365060	AT5G11050.1	39.073	453	187	13	23	442	16	412	2.05e-81	258
Msa0365060	AT5G58850.1	37.885	454	203	13	23	442	11	419	1.81e-76	245
Msa0365060	AT4G18770.1	66.667	138	41	1	125	262	208	340	7.10e-60	202
Msa0365060	AT3G27785.1	60.135	148	46	2	122	263	177	317	1.89e-54	187
Msa0365060	AT5G40360.1	54.615	130	56	1	134	263	158	284	1.64e-47	167
Msa0365060	AT3G09370.3	47.368	171	79	3	125	290	134	298	6.37e-41	153
Msa0365060	AT3G09370.2	47.368	171	79	3	125	290	126	290	6.61e-41	152
Msa0365060	AT3G09370.1	47.368	171	79	3	125	290	121	285	7.90e-41	152
Msa0365060	AT5G02320.1	60.909	110	43	0	125	234	118	227	1.09e-40	153
Msa0365060	AT5G02320.2	60.909	110	43	0	125	234	118	227	1.09e-40	153

Showing 1 to 10 of 207 entries

Previous1 2 3 4 5…21Next

Find 100 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCCTCAAACCACTGA+TGG	0.628725	3_1:-58752514	Msa0365060:CDS
AAACCAATTGGAGTACGTAT+TGG	0.519717	3_1:-58755117	Msa0365060:CDS
AAAGATGGCATAATCATCTG+AGG	0.662817	3_1:-58754066	Msa0365060:CDS
AACAATGTGGAGTTGCATCT+TGG	0.428463	3_1:-58751992	Msa0365060:CDS
AAGAGCTGGAAAGCAGTGTA+GGG	0.544280	3_1:-58754089	Msa0365060:CDS
AAGAGGGTTTCTTGGAGTAG+GGG	0.530916	3_1:+58752221	None:intergenic
AAGGAAGATTGGTTTGAAGA+AGG	0.458004	3_1:+58752364	None:intergenic
AAGGAGGACCAATAGAAGAG+TGG	0.673968	3_1:+58755067	None:intergenic
AAGGTAATTCATCATAGGTG+TGG	0.625090	3_1:+58752063	None:intergenic
AAGTGACATACTTTGATATC+AGG	0.394233	3_1:+58754043	None:intergenic

Showing 1 to 10 of 100 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGCCATTGATAGATTCTTAT+GGG	-	chr3_1:58751999-58752018	Msa0365060:CDS	30.0%
ATTAGGCCACATAAAACTAT+AGG	+	chr3_1:58752112-58752131	None:intergenic	30.0%
GAAAAAGAAGACACTTTCTT+AGG	+	chr3_1:58752291-58752310	None:intergenic	30.0%
CAAACACTCAAACAACAATT+AGG	+	chr3_1:58752365-58752384	None:intergenic	30.0%
AGCAATATGGTGTAAGAAAA+TGG	-	chr3_1:58752901-58752920	Msa0365060:intron	30.0%
AAGTGACATACTTTGATATC+AGG	+	chr3_1:58752999-58753018	None:intergenic	30.0%
TCTATATCTTATGAACTTGC+AGG	-	chr3_1:58753284-58753303	Msa0365060:intron	30.0%
ATTAATCCAAACGTGGATTT+AGG	+	chr3_1:58753410-58753429	None:intergenic	30.0%
TATCCTACTTATGAGAAAAG+TGG	+	chr3_1:58753473-58753492	None:intergenic	30.0%
AAACCTTGTCAAGGTTATTT+GGG	+	chr3_1:58753446-58753465	None:intergenic	30.0%

Showing 1 to 10 of 196 entries

Previous1 2 3 4 5…20Next

Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	58751919	58755142	58751919	ID=Msa0365060;Name=Msa0365060
chr3_1	mRNA	58751919	58755142	58751919	ID=Msa0365060-mRNA-1;Parent=Msa0365060;Name=Msa0365060-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|0\|0\|1\|1\|1\|3\|0\|445
chr3_1	exon	58754715	58755142	58754715	ID=Msa0365060-mRNA-1:exon:11155;Parent=Msa0365060-mRNA-1
chr3_1	exon	58754054	58754180	58754054	ID=Msa0365060-mRNA-1:exon:11154;Parent=Msa0365060-mRNA-1
chr3_1	exon	58751919	58752701	58751919	ID=Msa0365060-mRNA-1:exon:11153;Parent=Msa0365060-mRNA-1
chr3_1	CDS	58754715	58755142	58754715	ID=Msa0365060-mRNA-1:cds;Parent=Msa0365060-mRNA-1
chr3_1	CDS	58754054	58754180	58754054	ID=Msa0365060-mRNA-1:cds;Parent=Msa0365060-mRNA-1
chr3_1	CDS	58751919	58752701	58751919	ID=Msa0365060-mRNA-1:cds;Parent=Msa0365060-mRNA-1

Gene Sequence

>Msa0365060

ATGAAACCAATTGGAGTACGTATTGGTGGTGGTGATAATTTAAAGATCACCAACCACTCTTCTATTGGTCCTCCTTTGACTGCCATTGATAGATTCTTATGGGGTCAACACAACCACTTCCCTCAAAAGAAACTTCAACAGAATGTTGATGATCAAAATATTTATAGCTTTGGTTGTTCGAATGCTTCAACCTATAGTTTTATGTGGCCTAATAATAATAATATGATGTCTCAAGAAGCTAGCTTTGTTGATCAGCTATTGGCAAATGAAGAGGTGATGAATTGGACACAACAAATTCCTTCATTGTGTGTGGAGAAAGAAGATGCGATCAATGGTTTAGGAAAGGGTGCAAAAGTGGTTGGAAGAAGACCTAAGAAAGTGTCTTCTTTTTCCTTGATCAAAGGACAGTGGACTGATGAAGAAGACAGGAAATTGCTGAAGTTGGTGAAGCAATATGGTGTAAGAAAATGGTCTCAAATAGCTGAGAAATTGGAAGGAAGAGCTGGAAAGCAGTGTAGGGAAAGATGGCATAATCATCTGAGGCCTGATATCAAAAAAGATAGTTGGAGTGAAGAAGAAGAAAGGATGCTAGTAGAAACTCATGGCATGATTGGAAACCGTTGGGCGGAGATAGCAAAGAGAATTCCAGGAAGAACTGAGAATGCAATAAAGAATCATTGGAATGCAACAAAAAGGAGACAAAATTCAAGGAGAAAGAACAAAAGGCCTCAAACCACTGATGGTAAACCACAATCTTCTATTCTTCAAGACTACATCAAAACTTTGACTACTCAAAAAGCATCCACCGGTACTACTGCTACTACTACTACTGCTGCTACTACTAGCTCCGTGTCAGCGATCTCTGAGGACCCTTCTTCAAACCAATCTTCCTTTGTTTTTTCTAACCTATCCCATGAAAATTCATCATCACCACTTATATCTGAATCTTATGATGATGAACTCCTCTTCATGCAACAACTTTTCAAGGTGAATAATAACGCCGAACCTGTTAACCCCTACTCCAAGAAACCCTCTTCAAACCCTTACTATTCTTCCCAAACTAACAGTAATCAGATTCTCCCTGATGTTACTGATTGTGGATTTGTTCATTCCAATCTTTCCAATTACCCTAAACCAAATTCACAAAACAACATGTACTTGAGTACTTCTTCCACACCTATGATGAATTACCTTAATTCTGATCACTACCTTCCTCCAATGCTGAATGGAATTCAGAATCAGAACAATGTGGAGTTGCATCTTGGGAATATGAATTTCTCAGAGGGGAAGAGAGAGATGGATTTGTTGGAGTTGGTTTCTTCTGCTCAGTTTTATTAG

Protein sequence

>Msa0365060

MKPIGVRIGGGDNLKITNHSSIGPPLTAIDRFLWGQHNHFPQKKLQQNVDDQNIYSFGCSNASTYSFMWPNNNNMMSQEASFVDQLLANEEVMNWTQQIPSLCVEKEDAINGLGKGAKVVGRRPKKVSSFSLIKGQWTDEEDRKLLKLVKQYGVRKWSQIAEKLEGRAGKQCRERWHNHLRPDIKKDSWSEEEERMLVETHGMIGNRWAEIAKRIPGRTENAIKNHWNATKRRQNSRRKNKRPQTTDGKPQSSILQDYIKTLTTQKASTGTTATTTTAATTSSVSAISEDPSSNQSSFVFSNLSHENSSSPLISESYDDELLFMQQLFKVNNNAEPVNPYSKKPSSNPYYSSQTNSNQILPDVTDCGFVHSNLSNYPKPNSQNNMYLSTSSTPMMNYLNSDHYLPPMLNGIQNQNNVELHLGNMNFSEGKREMDLLELVSSAQFY*