AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0365130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0365130 MtrunA17_Chr3g0129321 95.122 205 7 2 1 204 3 205 8.13e-141 391
Msa0365130 MtrunA17_Chr8g0383251 51.531 196 74 6 2 192 4 183 7.76e-58 180
Msa0365130 MtrunA17_Chr1g0150801 45.763 177 69 6 9 177 5 162 1.28e-37 128
Msa0365130 MtrunA17_Chr2g0294231 59.740 77 31 0 103 179 189 265 2.22e-29 112
Msa0365130 MtrunA17_Chr4g0051881 46.667 105 43 1 103 194 164 268 6.56e-29 110
Msa0365130 MtrunA17_Chr8g0335811 54.255 94 33 2 85 178 131 214 4.25e-28 105
Msa0365130 MtrunA17_Chr4g0068541 62.162 74 28 0 104 177 195 268 5.67e-28 108
Msa0365130 MtrunA17_Chr5g0443131 57.333 75 32 0 103 177 143 217 8.93e-28 106
Msa0365130 MtrunA17_Chr1g0194481 50.000 94 44 1 86 179 130 220 7.16e-27 104
Msa0365130 MtrunA17_Chr7g0224801 57.353 68 29 0 106 173 82 149 1.32e-26 100
Msa0365130 MtrunA17_Chr3g0079691 37.324 142 80 2 49 190 436 568 1.17e-25 103
Msa0365130 MtrunA17_Chr3g0079691 39.423 104 59 2 73 176 239 338 2.04e-14 71.2
Msa0365130 MtrunA17_Chr7g0270191 39.823 113 67 1 72 184 101 212 1.40e-25 100
Msa0365130 MtrunA17_Chr7g0248721 48.980 98 45 3 80 177 106 198 1.75e-25 98.6
Msa0365130 MtrunA17_Chr5g0418781 45.192 104 56 1 72 175 80 182 1.85e-25 99.8
Msa0365130 MtrunA17_Chr8g0386241 55.714 70 31 0 104 173 90 159 2.74e-25 97.1
Msa0365130 MtrunA17_Chr7g0218081 52.000 75 36 0 103 177 396 470 2.90e-25 102
Msa0365130 MtrunA17_Chr7g0218081 56.667 60 25 1 117 176 228 286 3.73e-15 73.2
Msa0365130 MtrunA17_Chr7g0249311 56.000 75 33 0 103 177 378 452 5.90e-25 101
Msa0365130 MtrunA17_Chr7g0249311 52.381 63 29 1 117 179 179 240 4.07e-14 70.5
Msa0365130 MtrunA17_Chr7g0249301 53.947 76 35 0 102 177 277 352 6.29e-25 100
Msa0365130 MtrunA17_Chr7g0249301 50.000 64 31 1 116 179 61 123 3.42e-13 67.4
Msa0365130 MtrunA17_Chr3g0129361 56.579 76 32 1 103 178 130 204 7.01e-25 97.1
Msa0365130 MtrunA17_Chr5g0445311 45.833 96 44 1 90 177 329 424 7.25e-25 101
Msa0365130 MtrunA17_Chr5g0445311 48.333 60 30 1 117 176 200 258 4.90e-12 64.3
Msa0365130 MtrunA17_Chr5g0418191 52.000 75 36 0 103 177 306 380 7.47e-25 100
Msa0365130 MtrunA17_Chr5g0418191 51.667 60 28 1 117 176 151 209 2.30e-13 67.8
Msa0365130 MtrunA17_Chr7g0243891 38.272 162 90 3 17 177 282 434 1.61e-24 100
Msa0365130 MtrunA17_Chr7g0243891 51.667 60 28 1 117 176 216 274 1.19e-13 68.9
Msa0365130 MtrunA17_Chr4g0004911 54.667 75 34 0 103 177 322 396 2.80e-24 99.4
Msa0365130 MtrunA17_Chr4g0004911 49.254 67 34 0 110 176 177 243 1.83e-15 73.9
Msa0365130 MtrunA17_Chr4g0042831 52.000 75 36 0 103 177 264 338 5.62e-24 97.8
Msa0365130 MtrunA17_Chr4g0042831 35.256 156 74 4 48 203 98 226 1.77e-15 73.9
Msa0365130 MtrunA17_Chr3g0101131 54.054 74 34 0 103 176 401 474 9.14e-24 98.2
Msa0365130 MtrunA17_Chr3g0101131 48.333 60 30 1 117 176 243 301 7.77e-12 63.5
Msa0365130 MtrunA17_Chr8g0383351 57.143 77 31 2 103 178 145 220 1.01e-23 94.4
Msa0365130 MtrunA17_Chr3g0106491 53.333 75 35 0 103 177 351 425 2.76e-23 96.7
Msa0365130 MtrunA17_Chr3g0106491 44.000 75 37 2 107 177 184 257 2.48e-13 67.8
Msa0365130 MtrunA17_Chr5g0432161 45.833 96 46 1 82 177 392 481 1.07e-22 95.1
Msa0365130 MtrunA17_Chr5g0432161 51.667 60 28 1 117 176 244 302 1.18e-12 65.9
Msa0365130 MtrunA17_Chr6g0485431 36.296 135 76 4 50 176 82 214 1.71e-22 93.2
Msa0365130 MtrunA17_Chr7g0263531 45.263 95 46 1 88 176 326 420 3.31e-22 93.2
Msa0365130 MtrunA17_Chr7g0263531 54.237 59 26 1 118 176 190 247 1.28e-13 68.6
Msa0365130 MtrunA17_Chr7g0270831 45.055 91 45 2 91 176 186 276 8.03e-21 89.4
Msa0365130 MtrunA17_Chr5g0447701 52.055 73 35 0 104 176 239 311 8.67e-21 89.0
Msa0365130 MtrunA17_Chr5g0447701 44.444 63 34 1 114 176 89 150 8.64e-11 60.5
Msa0365130 MtrunA17_Chr7g0238921 45.783 83 39 1 115 197 122 198 1.36e-20 87.4
Msa0365130 MtrunA17_Chr3g0099641 50.000 74 36 1 104 176 238 311 7.14e-20 86.7
Msa0365130 MtrunA17_Chr2g0302391 51.351 74 35 1 104 176 198 271 9.64e-20 86.3
Msa0365130 MtrunA17_Chr4g0075201 48.649 74 37 1 104 176 254 327 1.21e-19 86.3
Msa0365130 MtrunA17_Chr2g0288871 48.649 74 37 1 104 176 292 365 1.68e-19 85.9
Msa0365130 MtrunA17_Chr1g0189391 49.333 75 37 1 100 173 80 154 2.95e-19 84.0
Msa0365130 MtrunA17_Chr4g0074001 44.000 75 42 0 103 177 345 419 3.20e-19 85.1
Msa0365130 MtrunA17_Chr1g0188941 44.595 74 41 0 103 176 37 110 8.08e-19 78.2
Msa0365130 MtrunA17_Chr2g0333851 35.556 135 68 5 89 204 138 272 1.72e-18 81.6
Msa0365130 MtrunA17_Chr4g0053281 44.186 86 44 2 89 173 241 323 2.21e-18 81.6
Msa0365130 MtrunA17_Chr4g0051181 48.000 75 38 1 104 177 230 304 2.28e-18 82.4
Msa0365130 MtrunA17_Chr2g0322391 47.297 74 38 1 104 176 336 409 2.49e-18 82.4
Msa0365130 MtrunA17_Chr4g0060271 44.706 85 46 1 93 176 231 315 4.58e-18 81.6
Msa0365130 MtrunA17_Chr4g0025051 49.351 77 38 1 104 179 322 398 5.13e-18 81.6
Msa0365130 MtrunA17_Chr2g0293481 34.711 121 75 2 57 176 210 327 4.30e-17 79.0
Msa0365130 MtrunA17_Chr3g0136961 52.542 59 27 1 116 173 137 195 6.12e-17 77.0
Msa0365130 MtrunA17_Chr7g0216891 40.816 98 54 2 77 173 182 276 7.42e-17 78.2
Msa0365130 MtrunA17_Chr2g0319961 41.758 91 50 2 89 176 50 140 1.38e-16 75.9
Msa0365130 MtrunA17_Chr5g0401821 44.706 85 43 2 90 173 175 256 1.49e-16 75.9
Msa0365130 MtrunA17_Chr1g0147881 45.455 88 42 4 87 173 237 319 1.54e-16 76.6
Msa0365130 MtrunA17_Chr7g0270051 42.857 98 43 4 86 176 22 113 1.93e-16 75.5
Msa0365130 MtrunA17_Chr8g0379461 47.143 70 36 1 118 186 77 146 3.03e-16 74.7
Msa0365130 MtrunA17_Chr4g0071521 44.828 87 41 2 88 173 222 302 3.19e-16 75.5
Msa0365130 MtrunA17_Chr4g0001361 49.206 63 31 1 115 176 160 222 1.42e-15 73.6
Msa0365130 MtrunA17_Chr5g0447711 41.892 74 43 0 103 176 216 289 1.43e-15 73.6
Msa0365130 MtrunA17_Chr4g0025061 45.333 75 40 1 104 177 347 421 2.26e-15 73.9
Msa0365130 MtrunA17_Chr8g0348311 45.455 66 35 1 114 178 152 217 4.22e-15 72.4
Msa0365130 MtrunA17_Chr1g0202461 47.619 63 32 1 115 176 259 321 6.12e-15 72.4
Msa0365130 MtrunA17_Chr8g0387501 50.000 60 29 1 118 176 130 189 1.11e-14 70.9
Msa0365130 MtrunA17_Chr7g0248691 47.619 63 32 1 115 176 152 214 1.47e-14 70.9
Msa0365130 MtrunA17_Chr1g0184691 41.250 80 46 1 95 173 271 350 2.25e-14 70.5
Msa0365130 MtrunA17_Chr1g0150281 47.368 57 29 1 118 173 141 197 3.58e-14 69.3
Msa0365130 MtrunA17_Chr2g0284321 48.333 60 30 1 118 176 36 95 1.21e-13 67.0
Msa0365130 MtrunA17_Chr7g0228941 32.632 95 63 1 94 187 29 123 2.15e-13 64.3
Msa0365130 MtrunA17_Chr1g0150271 38.095 84 47 2 115 193 99 182 5.17e-13 65.9
Msa0365130 MtrunA17_Chr2g0289181 43.750 64 35 1 114 176 11 74 9.85e-13 64.7
Msa0365130 MtrunA17_Chr3g0139021 37.500 88 46 3 88 173 291 371 1.00e-12 65.9
Msa0365130 MtrunA17_Chr4g0024391 40.000 75 44 1 104 177 216 290 7.29e-12 63.5
Msa0365130 MtrunA17_Chr5g0432071 47.619 63 32 1 117 179 104 165 2.30e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0365130 AT5G64810.1 60.185 108 42 1 89 196 83 189 2.10e-40 136
Msa0365130 AT5G26170.1 75.000 72 18 0 104 175 100 171 8.41e-37 126
Msa0365130 AT4G18170.1 50.526 95 45 1 86 178 139 233 2.89e-28 108
Msa0365130 AT5G41570.1 50.000 92 44 1 86 177 67 156 3.48e-28 104
Msa0365130 AT2G46130.1 58.667 75 29 1 103 177 16 88 4.67e-28 102
Msa0365130 AT3G01970.1 60.000 70 28 0 104 173 52 121 6.88e-28 103
Msa0365130 AT5G49520.1 59.459 74 30 0 104 177 208 281 1.19e-27 108
Msa0365130 AT1G29860.1 58.904 73 30 0 104 176 123 195 4.23e-27 104
Msa0365130 AT5G46350.1 55.263 76 34 0 103 178 169 244 6.16e-27 105
Msa0365130 AT2G21900.1 45.455 99 46 2 86 181 80 173 7.22e-27 102
Msa0365130 AT2G44745.1 51.648 91 35 1 83 173 120 201 9.17e-27 102
Msa0365130 AT1G13960.2 43.810 105 58 1 72 176 212 315 3.49e-26 103
Msa0365130 AT1G13960.2 54.688 64 28 1 116 179 75 137 1.32e-16 77.4
Msa0365130 AT1G13960.1 38.889 144 78 3 37 176 331 468 4.75e-26 104
Msa0365130 AT1G13960.1 55.556 63 27 1 117 179 229 290 1.43e-16 77.8
Msa0365130 AT2G47260.1 48.000 100 49 1 80 179 140 236 5.55e-26 102
Msa0365130 AT3G62340.1 54.217 83 38 0 95 177 96 178 6.21e-26 101
Msa0365130 AT5G13080.1 57.143 70 30 0 104 173 54 123 8.92e-26 97.4
Msa0365130 AT1G69310.4 54.795 73 33 0 103 175 133 205 3.73e-25 99.8
Msa0365130 AT1G69310.2 54.795 73 33 0 103 175 133 205 3.73e-25 99.8
Msa0365130 AT1G69310.1 54.795 73 33 0 103 175 133 205 3.73e-25 99.8
Msa0365130 AT1G64000.1 51.220 82 38 1 104 185 101 180 6.70e-25 96.7
Msa0365130 AT2G03340.1 53.333 75 35 0 103 177 401 475 8.53e-25 101
Msa0365130 AT2G03340.1 42.105 95 50 2 86 176 215 308 1.03e-15 75.1
Msa0365130 AT2G04880.2 42.478 113 54 2 78 182 239 348 2.27e-24 99.8
Msa0365130 AT2G30250.1 49.485 97 42 2 87 176 291 387 2.60e-24 99.0
Msa0365130 AT4G39410.1 47.872 94 39 2 85 178 200 283 2.69e-24 97.8
Msa0365130 AT2G04880.1 42.478 113 54 2 78 182 263 372 2.80e-24 99.8
Msa0365130 AT5G56270.1 50.000 88 43 1 91 177 460 547 9.00e-24 98.6
Msa0365130 AT5G56270.1 55.000 60 26 1 117 176 273 331 1.24e-14 72.4
Msa0365130 AT2G46130.2 56.000 75 27 2 103 177 16 84 1.04e-23 90.9
Msa0365130 AT5G07100.2 50.549 91 41 2 86 176 114 200 1.61e-23 93.6
Msa0365130 AT5G07100.2 46.667 60 32 0 117 176 24 83 1.47e-11 61.6
Msa0365130 AT5G07100.4 50.549 91 41 2 86 176 114 200 1.61e-23 93.6
Msa0365130 AT5G07100.4 46.667 60 32 0 117 176 24 83 1.47e-11 61.6
Msa0365130 AT5G07100.5 50.549 91 41 2 86 176 114 200 1.61e-23 93.6
Msa0365130 AT5G07100.5 46.667 60 32 0 117 176 24 83 1.47e-11 61.6
Msa0365130 AT5G07100.3 50.549 91 41 2 86 176 114 200 1.61e-23 93.6
Msa0365130 AT5G07100.3 46.667 60 32 0 117 176 24 83 1.47e-11 61.6
Msa0365130 AT4G26640.5 52.000 75 36 0 103 177 191 265 1.89e-23 96.7
Msa0365130 AT4G26640.5 39.080 87 52 1 115 201 33 118 4.78e-13 67.4
Msa0365130 AT4G26640.6 52.000 75 36 0 103 177 191 265 1.89e-23 96.7
Msa0365130 AT4G26640.6 39.080 87 52 1 115 201 33 118 4.78e-13 67.4
Msa0365130 AT4G26640.4 52.000 75 36 0 103 177 191 265 1.89e-23 96.7
Msa0365130 AT4G26640.4 39.080 87 52 1 115 201 33 118 4.78e-13 67.4
Msa0365130 AT4G26640.3 52.000 75 36 0 103 177 191 265 1.89e-23 96.7
Msa0365130 AT4G26640.3 39.080 87 52 1 115 201 33 118 4.78e-13 67.4
Msa0365130 AT5G07100.1 50.549 91 41 2 86 176 207 293 2.28e-23 95.1
Msa0365130 AT5G07100.1 35.714 112 60 3 77 176 65 176 5.77e-12 63.9
Msa0365130 AT4G26640.7 52.000 75 36 0 103 177 327 401 2.55e-23 97.1
Msa0365130 AT4G26640.7 39.535 86 51 1 115 200 169 253 5.44e-13 67.4
Msa0365130 AT4G26640.1 52.000 75 36 0 103 177 295 369 2.97e-23 96.7
Msa0365130 AT4G26640.1 39.535 86 51 1 115 200 137 221 5.67e-13 67.4
Msa0365130 AT4G26640.2 52.000 75 36 0 103 177 367 441 3.02e-23 97.1
Msa0365130 AT4G26640.2 39.535 86 51 1 115 200 209 293 5.36e-13 67.4
Msa0365130 AT2G38470.1 53.333 75 35 0 103 177 348 422 3.06e-23 97.1
Msa0365130 AT2G38470.1 45.833 72 37 2 105 176 173 242 6.23e-12 64.3
Msa0365130 AT3G01080.1 50.000 74 37 0 103 176 292 365 5.17e-23 95.9
Msa0365130 AT3G01080.1 51.613 62 29 1 117 178 167 227 6.99e-14 69.7
Msa0365130 AT3G01080.2 50.000 74 37 0 103 176 330 403 6.54e-23 95.9
Msa0365130 AT3G01080.2 51.613 62 29 1 117 178 205 265 8.76e-14 69.7
Msa0365130 AT4G26440.1 53.333 75 35 0 103 177 358 432 6.31e-22 93.2
Msa0365130 AT4G26440.1 53.333 60 27 1 117 176 178 236 2.21e-13 68.6
Msa0365130 AT1G69310.3 52.055 73 31 1 103 175 133 201 9.50e-21 87.8
Msa0365130 AT4G04450.2 48.649 74 37 1 104 176 185 258 3.06e-19 85.1
Msa0365130 AT1G68150.1 48.052 77 39 1 104 179 222 298 3.35e-19 84.7
Msa0365130 AT4G22070.4 50.000 74 36 1 104 176 284 357 6.15e-19 84.7
Msa0365130 AT4G22070.3 50.000 74 36 1 104 176 284 357 6.15e-19 84.7
Msa0365130 AT4G22070.2 50.000 74 36 1 104 176 284 357 6.15e-19 84.7
Msa0365130 AT4G22070.1 50.000 74 36 1 104 176 284 357 6.15e-19 84.7
Msa0365130 AT1G62300.1 50.000 74 36 1 104 176 299 372 9.33e-19 84.0
Msa0365130 AT4G04450.1 48.649 74 37 1 104 176 279 352 9.47e-19 84.0
Msa0365130 AT4G30935.1 43.210 81 44 1 115 193 329 409 1.10e-18 83.6
Msa0365130 AT5G43290.1 41.071 112 50 4 92 193 80 185 5.47e-18 80.1
Msa0365130 AT1G55600.1 46.575 73 39 0 104 176 294 366 5.60e-18 81.6
Msa0365130 AT4G01720.1 43.750 96 49 2 86 176 204 299 7.81e-18 81.3
Msa0365130 AT5G15130.2 45.455 77 41 1 104 179 172 248 1.84e-17 80.5
Msa0365130 AT2G34830.1 37.037 108 63 4 71 176 171 275 2.02e-17 80.1
Msa0365130 AT2G34830.2 37.037 108 63 4 71 176 180 284 2.16e-17 80.1
Msa0365130 AT5G15130.1 45.455 77 41 1 104 179 214 290 2.17e-17 80.1
Msa0365130 AT2G25000.2 45.833 72 38 1 116 186 102 173 2.95e-17 77.4
Msa0365130 AT2G25000.4 45.833 72 38 1 116 186 102 173 2.95e-17 77.4
Msa0365130 AT1G18860.1 47.297 74 38 1 104 176 226 299 3.79e-17 79.3
Msa0365130 AT2G25000.3 45.833 72 38 1 116 186 124 195 4.70e-17 77.4
Msa0365130 AT2G23320.1 42.353 85 45 2 90 173 216 297 5.75e-17 77.8
Msa0365130 AT2G25000.1 45.833 72 38 1 116 186 145 216 6.72e-17 77.0
Msa0365130 AT4G31800.2 50.000 62 30 1 116 176 110 171 8.68e-17 76.3
Msa0365130 AT1G80840.1 36.538 104 59 3 76 176 107 206 9.85e-17 77.0
Msa0365130 AT4G24240.1 45.977 87 40 2 88 173 258 338 1.08e-16 77.4
Msa0365130 AT4G31800.1 50.000 62 30 1 116 176 175 236 1.65e-16 76.6
Msa0365130 AT1G29280.1 40.000 95 54 2 88 179 43 137 2.70e-16 75.5
Msa0365130 AT1G30650.1 33.913 115 70 4 64 176 167 277 5.01e-16 75.9
Msa0365130 AT2G37260.2 36.893 103 55 2 71 173 231 323 1.05e-15 74.7
Msa0365130 AT2G37260.2 52.542 59 27 1 118 176 84 141 4.67e-12 64.3
Msa0365130 AT2G37260.3 36.893 103 55 2 71 173 233 325 1.06e-15 74.7
Msa0365130 AT2G37260.3 52.542 59 27 1 118 176 86 143 4.52e-12 64.3
Msa0365130 AT2G37260.1 36.893 103 55 2 71 173 313 405 1.35e-15 74.7
Msa0365130 AT2G37260.1 52.542 59 27 1 118 176 166 223 3.26e-12 65.1
Msa0365130 AT2G24570.1 39.362 94 55 2 92 183 218 311 1.36e-15 74.3
Msa0365130 AT3G58710.2 39.785 93 55 1 88 179 41 133 1.36e-15 73.6
Msa0365130 AT2G30590.1 45.000 80 43 1 95 173 291 370 1.61e-15 74.3
Msa0365130 AT4G01250.1 48.387 62 31 1 118 178 129 190 3.81e-15 72.8
Msa0365130 AT5G28650.1 52.459 61 28 1 114 173 259 319 4.17e-15 72.8
Msa0365130 AT3G58710.1 39.130 92 55 1 89 179 43 134 5.32e-15 72.0
Msa0365130 AT4G31550.1 39.759 83 49 1 92 173 221 303 7.50e-15 72.0
Msa0365130 AT4G31550.2 41.250 80 46 1 95 173 223 302 8.38e-15 72.0
Msa0365130 AT3G04670.1 50.820 61 29 1 114 173 259 319 2.24e-14 70.9
Msa0365130 AT5G52830.1 46.269 67 35 1 111 176 159 225 3.12e-14 70.5
Msa0365130 AT3G01080.3 51.613 62 29 1 117 178 205 265 6.26e-14 69.3
Msa0365130 AT4G23550.1 46.032 63 33 1 115 176 138 200 7.71e-14 69.3
Msa0365130 AT5G45050.1 37.037 108 62 2 70 176 1138 1240 4.38e-13 67.8
Msa0365130 AT5G45050.4 37.037 108 62 2 70 176 999 1101 4.46e-13 67.8
Msa0365130 AT5G45050.2 50.000 60 29 1 118 176 1153 1212 4.99e-13 67.8
Msa0365130 AT1G69810.2 40.698 86 49 2 93 176 121 206 6.65e-13 66.6
Msa0365130 AT1G69810.1 47.619 63 31 2 116 176 202 264 9.39e-13 66.6
Msa0365130 AT5G24110.1 42.373 59 31 1 116 171 112 170 5.53e-12 63.9
Msa0365130 AT2G40740.1 26.437 174 113 5 25 186 78 248 1.84e-11 62.4
Msa0365130 AT2G40740.3 26.437 174 113 5 25 186 87 257 2.24e-11 62.0
Msa0365130 AT1G66560.1 44.828 58 29 1 117 171 103 160 5.31e-11 60.5
Msa0365130 AT4G12020.2 45.902 61 32 1 116 176 467 526 8.29e-11 61.2
Msa0365130 AT4G12020.3 45.902 61 32 1 116 176 467 526 8.36e-11 61.2
Msa0365130 AT4G12020.4 45.902 61 32 1 116 176 467 526 8.36e-11 61.2
Msa0365130 AT4G12020.5 45.902 61 32 1 116 176 400 459 8.58e-11 61.2
Msa0365130 AT4G12020.1 45.902 61 32 1 116 176 467 526 8.74e-11 61.2
Msa0365130 AT4G12020.9 45.902 61 32 1 116 176 467 526 8.74e-11 61.2
Msa0365130 AT4G12020.7 45.902 61 32 1 116 176 467 526 8.90e-11 61.2
Msa0365130 AT4G12020.10 45.902 61 32 1 116 176 467 526 8.93e-11 61.2
Msa0365130 AT4G12020.6 45.902 61 32 1 116 176 467 526 9.06e-11 61.2
Msa0365130 AT4G12020.8 45.902 61 32 1 116 176 467 526 9.06e-11 61.2

Find 62 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTGATAAGGGTTAGAATT+AGG 0.170308 3_1:-58893712 None:intergenic
ATTGCGATAGCCATGTATTT+TGG 0.185340 3_1:+58893685 None:intergenic
CATTAATTTATCTGATTATC+TGG 0.206659 3_1:+58893771 Msa0365130:CDS
ATGATTAACTTAGCATTAAT+TGG 0.206723 3_1:-58895448 None:intergenic
GAGATCGCAGCTTGAGATTA+TGG 0.274833 3_1:+58894123 Msa0365130:CDS
ATCGAGTTGGTAAGTTATAT+TGG 0.315433 3_1:+58895534 Msa0365130:three_prime_UTR
TGTGATAAGGGTTAGAATTA+GGG 0.327958 3_1:-58893711 None:intergenic
CATCATGTTATTGTTCTTGT+TGG 0.335475 3_1:-58893929 None:intergenic
ATACTGTACCCCAGTGTCTT+TGG 0.341378 3_1:+58895377 Msa0365130:CDS
AATAACTATGATTAAATAAC+AGG 0.351907 3_1:-58895564 None:intergenic
GATATATTATTATTGTGATA+AGG 0.354376 3_1:-58893724 None:intergenic
CTCGTTCTAAACGTCACTCT+TGG 0.361959 3_1:-58894103 None:intergenic
GGATTCAAATGGAGGAAGTA+TGG 0.376820 3_1:+58894151 Msa0365130:CDS
ATATATTATTATTGTGATAA+GGG 0.384981 3_1:-58893723 None:intergenic
TGGGGTACAGTATGAATTGC+AGG 0.404020 3_1:-58895367 None:intergenic
TTTATCTGATTATCTGGTGC+TGG 0.421050 3_1:+58893777 Msa0365130:CDS
GTTATTGTTCTTGTTGGTAG+AGG 0.430991 3_1:-58893923 None:intergenic
GATATTAATGTCATCAATCA+AGG 0.432364 3_1:+58893877 Msa0365130:CDS
CAGCTTGAGATTATGGATGA+TGG 0.458517 3_1:+58894130 Msa0365130:CDS
AGAAAAGGGTGGAAAGGGAT+AGG 0.462080 3_1:+58895289 Msa0365130:CDS
AAGGATGTGGTGTGAAGAAA+AGG 0.469530 3_1:+58895274 Msa0365130:CDS
TCGTTCTAAACGTCACTCTT+GGG 0.470165 3_1:-58894102 None:intergenic
GAAAAGGGTGGAAAGGGATA+GGG 0.470665 3_1:+58895290 Msa0365130:CDS
ATTGATGACATTAATATCAA+TGG 0.474010 3_1:-58893872 None:intergenic
GTGCTGCTGTGGCCATTCAT+TGG 0.482833 3_1:-58895406 None:intergenic
ACGTAAAAGCAGGGAGATGA+AGG 0.487697 3_1:+58894060 Msa0365130:CDS
TTGGAAGAAGAGGTTGCAGA+AGG 0.494174 3_1:-58895429 None:intergenic
CTTTGGTGTATTCCAATGAA+TGG 0.497333 3_1:+58895394 Msa0365130:CDS
TGTGAAGAAAAGGGTGGAAA+GGG 0.502030 3_1:+58895284 Msa0365130:CDS
AAGAGTAATTACCTTGGGTA+TGG 0.521127 3_1:-58894196 None:intergenic
TTGACAGGAAACGTAAAAGC+AGG 0.524253 3_1:+58894050 Msa0365130:intron
TTATGGATGATGGATTCAAA+TGG 0.530112 3_1:+58894140 Msa0365130:CDS
AGGAACTACTACAAGTGTTC+AGG 0.531147 3_1:+58895249 Msa0365130:intron
TATGTGTTAACAAGCTATGA+AGG 0.531151 3_1:+58895324 Msa0365130:CDS
TTAGCATTAATTGGAAGAAG+AGG 0.534274 3_1:-58895439 None:intergenic
GACATTAATATCAATGGTGG+TGG 0.540399 3_1:-58893866 None:intergenic
ATTAGGGTTTCCAAAATACA+TGG 0.543667 3_1:-58893695 None:intergenic
TTGGAATACACCAAAGACAC+TGG 0.546851 3_1:-58895387 None:intergenic
TACTACAAGTGTTCAGGTGA+AGG 0.550615 3_1:+58895255 Msa0365130:CDS
AAATCAGACGAGGAAGGAGG+AGG 0.561547 3_1:-58893748 None:intergenic
GTGTGAAGAAAAGGGTGGAA+AGG 0.565384 3_1:+58895283 Msa0365130:CDS
GAATGTTGGTCACAAAGTAC+AGG 0.570695 3_1:+58893814 Msa0365130:CDS
GTTGCAGAAGGGTGCTGCTG+TGG 0.575437 3_1:-58895417 None:intergenic
CTAGGAAGGTCTGATCGAGT+TGG 0.594851 3_1:+58895521 Msa0365130:three_prime_UTR
TGGATGATGGATTCAAATGG+AGG 0.596809 3_1:+58894143 Msa0365130:CDS
GGGGTACAGTATGAATTGCA+GGG 0.599439 3_1:-58895366 None:intergenic
TTAATATCAATGGTGGTGGA+AGG 0.605778 3_1:-58893862 None:intergenic
TGGAATACACCAAAGACACT+GGG 0.618318 3_1:-58895386 None:intergenic
ATGATGAACATCAAGAATGT+TGG 0.619679 3_1:+58893800 Msa0365130:CDS
AAGTGTTCAGGTGAAGGATG+TGG 0.620118 3_1:+58895261 Msa0365130:CDS
AACTGAATCATCAGACAACA+AGG 0.625525 3_1:+58893837 Msa0365130:CDS
AGGATGTGGTGTGAAGAAAA+GGG 0.633271 3_1:+58895275 Msa0365130:CDS
TGGAAGAAGAGGTTGCAGAA+GGG 0.634753 3_1:-58895428 None:intergenic
ATGAAATCAGACGAGGAAGG+AGG 0.639707 3_1:-58893751 None:intergenic
TCAAGAATAGTCCATACCCA+AGG 0.659061 3_1:+58894185 Msa0365130:CDS
ATGTGGTGTGAAGAAAAGGG+TGG 0.669156 3_1:+58895278 Msa0365130:CDS
TGACAGGAAACGTAAAAGCA+GGG 0.673462 3_1:+58894051 Msa0365130:intron
GATGACATTAATATCAATGG+TGG 0.679350 3_1:-58893869 None:intergenic
GGGTACAGTATGAATTGCAG+GGG 0.679577 3_1:-58895365 None:intergenic
TTAATGAAATCAGACGAGGA+AGG 0.681005 3_1:-58893754 None:intergenic
TAAATTAATGAAATCAGACG+AGG 0.714233 3_1:-58893758 None:intergenic
GGAATACACCAAAGACACTG+GGG 0.778283 3_1:-58895385 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATTATTATTGTGATAA+GGG - chr3_1:58893726-58893745 None:intergenic 10.0%
!!! ATAATAATGTATGTATATTT+TGG + chr3_1:58894017-58894036 Msa0365130:intron 10.0%
!!! AGTAAATTTGTTTAAAAAAA+TGG - chr3_1:58894484-58894503 None:intergenic 10.0%
!! ATATATTATTATTGTGATAA+GGG - chr3_1:58893726-58893745 None:intergenic 10.0%
!!! ATAATAATGTATGTATATTT+TGG + chr3_1:58894017-58894036 Msa0365130:intron 10.0%
!!! AGTAAATTTGTTTAAAAAAA+TGG - chr3_1:58894484-58894503 None:intergenic 10.0%
!! GATATATTATTATTGTGATA+AGG - chr3_1:58893727-58893746 None:intergenic 15.0%
!! ATTAATTTATTTACATGTGA+TGG - chr3_1:58894315-58894334 None:intergenic 15.0%
!!! CAAAATAACTTTTCTATTTA+TGG - chr3_1:58894441-58894460 None:intergenic 15.0%
!! TATATAAATAAATATTGTGG+CGG + chr3_1:58894614-58894633 Msa0365130:intron 15.0%
!! TCATAATTATAAACTGTATA+CGG + chr3_1:58894679-58894698 Msa0365130:intron 15.0%
!! TAATTAGCAAACAAATTAAA+TGG + chr3_1:58894777-58894796 Msa0365130:intron 15.0%
!! CTTATTCTTTAAATTATTCT+AGG + chr3_1:58895150-58895169 Msa0365130:intron 15.0%
!! GATATATTATTATTGTGATA+AGG - chr3_1:58893727-58893746 None:intergenic 15.0%
!! ATTAATTTATTTACATGTGA+TGG - chr3_1:58894315-58894334 None:intergenic 15.0%
!!! CAAAATAACTTTTCTATTTA+TGG - chr3_1:58894441-58894460 None:intergenic 15.0%
!! TATATAAATAAATATTGTGG+CGG + chr3_1:58894614-58894633 Msa0365130:intron 15.0%
!! TCATAATTATAAACTGTATA+CGG + chr3_1:58894679-58894698 Msa0365130:intron 15.0%
!! TAATTAGCAAACAAATTAAA+TGG + chr3_1:58894777-58894796 Msa0365130:intron 15.0%
!! CTTATTCTTTAAATTATTCT+AGG + chr3_1:58895150-58895169 Msa0365130:intron 15.0%
!! CATTAATTTATCTGATTATC+TGG + chr3_1:58893771-58893790 Msa0365130:CDS 20.0%
!!! ATTGATGACATTAATATCAA+TGG - chr3_1:58893875-58893894 None:intergenic 20.0%
!! AAAAATTAACATCACAAAAG+TGG - chr3_1:58893982-58894001 None:intergenic 20.0%
!!! TATGTATATTTTGGATTCTT+TGG + chr3_1:58894026-58894045 Msa0365130:intron 20.0%
!! AACATTCTACTTAACTTAAT+TGG + chr3_1:58894543-58894562 Msa0365130:intron 20.0%
!!! TAATTACACACAAAATTTTC+TGG - chr3_1:58895182-58895201 None:intergenic 20.0%
!! ATGATTAACTTAGCATTAAT+TGG - chr3_1:58895451-58895470 None:intergenic 20.0%
!! CATTAATTTATCTGATTATC+TGG + chr3_1:58893771-58893790 Msa0365130:CDS 20.0%
!!! ATTGATGACATTAATATCAA+TGG - chr3_1:58893875-58893894 None:intergenic 20.0%
!! AAAAATTAACATCACAAAAG+TGG - chr3_1:58893982-58894001 None:intergenic 20.0%
!!! TATGTATATTTTGGATTCTT+TGG + chr3_1:58894026-58894045 Msa0365130:intron 20.0%
!! AACATTCTACTTAACTTAAT+TGG + chr3_1:58894543-58894562 Msa0365130:intron 20.0%
!!! TAATTACACACAAAATTTTC+TGG - chr3_1:58895182-58895201 None:intergenic 20.0%
!! ATGATTAACTTAGCATTAAT+TGG - chr3_1:58895451-58895470 None:intergenic 20.0%
! TAAATTAATGAAATCAGACG+AGG - chr3_1:58893761-58893780 None:intergenic 25.0%
! GATATTAATGTCATCAATCA+AGG + chr3_1:58893877-58893896 Msa0365130:CDS 25.0%
! TCTACTTAACTTAATTGGAT+AGG + chr3_1:58894548-58894567 Msa0365130:intron 25.0%
! AACTTAATTGGATAGGAAAT+AGG + chr3_1:58894555-58894574 Msa0365130:intron 25.0%
!! ATGCAAAAGTGCATTATTTA+CGG - chr3_1:58895009-58895028 None:intergenic 25.0%
! TAAATTAATGAAATCAGACG+AGG - chr3_1:58893761-58893780 None:intergenic 25.0%
! GATATTAATGTCATCAATCA+AGG + chr3_1:58893877-58893896 Msa0365130:CDS 25.0%
! TCTACTTAACTTAATTGGAT+AGG + chr3_1:58894548-58894567 Msa0365130:intron 25.0%
! AACTTAATTGGATAGGAAAT+AGG + chr3_1:58894555-58894574 Msa0365130:intron 25.0%
!! ATGCAAAAGTGCATTATTTA+CGG - chr3_1:58895009-58895028 None:intergenic 25.0%
TGTGATAAGGGTTAGAATTA+GGG - chr3_1:58893714-58893733 None:intergenic 30.0%
TTGTGATAAGGGTTAGAATT+AGG - chr3_1:58893715-58893734 None:intergenic 30.0%
ATGATGAACATCAAGAATGT+TGG + chr3_1:58893800-58893819 Msa0365130:CDS 30.0%
GATGACATTAATATCAATGG+TGG - chr3_1:58893872-58893891 None:intergenic 30.0%
CATCATGTTATTGTTCTTGT+TGG - chr3_1:58893932-58893951 None:intergenic 30.0%
!! TTATGGATGATGGATTCAAA+TGG + chr3_1:58894140-58894159 Msa0365130:CDS 30.0%
TGACTAAGAGTAATTACCTT+GGG - chr3_1:58894204-58894223 None:intergenic 30.0%
TTGACTAAGAGTAATTACCT+TGG - chr3_1:58894205-58894224 None:intergenic 30.0%
TCTTTAATTCATTGCCTTCT+TGG + chr3_1:58894231-58894250 Msa0365130:intron 30.0%
!! GTACACAACTTTTAACTCAA+GGG + chr3_1:58894375-58894394 Msa0365130:intron 30.0%
ATTGTTTAACCAATGCTCTT+AGG + chr3_1:58894511-58894530 Msa0365130:intron 30.0%
TAAACTGTATACGGTTTAAG+TGG + chr3_1:58894688-58894707 Msa0365130:intron 30.0%
! TGCAAAAGTGCATTATTTAC+GGG - chr3_1:58895008-58895027 None:intergenic 30.0%
TATGTGTTAACAAGCTATGA+AGG + chr3_1:58895324-58895343 Msa0365130:CDS 30.0%
TTAGCATTAATTGGAAGAAG+AGG - chr3_1:58895442-58895461 None:intergenic 30.0%
!!! AGCTAGCTGCTTTTAATAAA+AGG + chr3_1:58895498-58895517 Msa0365130:three_prime_UTR 30.0%
! CTTTTAATAAAAGGCTAGGA+AGG + chr3_1:58895507-58895526 Msa0365130:three_prime_UTR 30.0%
!! ATCGAGTTGGTAAGTTATAT+TGG + chr3_1:58895534-58895553 Msa0365130:three_prime_UTR 30.0%
TGTGATAAGGGTTAGAATTA+GGG - chr3_1:58893714-58893733 None:intergenic 30.0%
TTGTGATAAGGGTTAGAATT+AGG - chr3_1:58893715-58893734 None:intergenic 30.0%
ATGATGAACATCAAGAATGT+TGG + chr3_1:58893800-58893819 Msa0365130:CDS 30.0%
GATGACATTAATATCAATGG+TGG - chr3_1:58893872-58893891 None:intergenic 30.0%
CATCATGTTATTGTTCTTGT+TGG - chr3_1:58893932-58893951 None:intergenic 30.0%
!! TTATGGATGATGGATTCAAA+TGG + chr3_1:58894140-58894159 Msa0365130:CDS 30.0%
TGACTAAGAGTAATTACCTT+GGG - chr3_1:58894204-58894223 None:intergenic 30.0%
TTGACTAAGAGTAATTACCT+TGG - chr3_1:58894205-58894224 None:intergenic 30.0%
TCTTTAATTCATTGCCTTCT+TGG + chr3_1:58894231-58894250 Msa0365130:intron 30.0%
!! GTACACAACTTTTAACTCAA+GGG + chr3_1:58894375-58894394 Msa0365130:intron 30.0%
ATTGTTTAACCAATGCTCTT+AGG + chr3_1:58894511-58894530 Msa0365130:intron 30.0%
TAAACTGTATACGGTTTAAG+TGG + chr3_1:58894688-58894707 Msa0365130:intron 30.0%
! TGCAAAAGTGCATTATTTAC+GGG - chr3_1:58895008-58895027 None:intergenic 30.0%
TATGTGTTAACAAGCTATGA+AGG + chr3_1:58895324-58895343 Msa0365130:CDS 30.0%
TTAGCATTAATTGGAAGAAG+AGG - chr3_1:58895442-58895461 None:intergenic 30.0%
!!! AGCTAGCTGCTTTTAATAAA+AGG + chr3_1:58895498-58895517 Msa0365130:three_prime_UTR 30.0%
! CTTTTAATAAAAGGCTAGGA+AGG + chr3_1:58895507-58895526 Msa0365130:three_prime_UTR 30.0%
!! ATCGAGTTGGTAAGTTATAT+TGG + chr3_1:58895534-58895553 Msa0365130:three_prime_UTR 30.0%
TTAATGAAATCAGACGAGGA+AGG - chr3_1:58893757-58893776 None:intergenic 35.0%
TTTATCTGATTATCTGGTGC+TGG + chr3_1:58893777-58893796 Msa0365130:CDS 35.0%
AACTGAATCATCAGACAACA+AGG + chr3_1:58893837-58893856 Msa0365130:CDS 35.0%
!! TTAATATCAATGGTGGTGGA+AGG - chr3_1:58893865-58893884 None:intergenic 35.0%
GACATTAATATCAATGGTGG+TGG - chr3_1:58893869-58893888 None:intergenic 35.0%
! GTTATTGTTCTTGTTGGTAG+AGG - chr3_1:58893926-58893945 None:intergenic 35.0%
!! TTTGGATTCTTTGGTTTGAC+AGG + chr3_1:58894035-58894054 Msa0365130:intron 35.0%
AAGAGTAATTACCTTGGGTA+TGG - chr3_1:58894199-58894218 None:intergenic 35.0%
GTGTACGCATGATATTGATA+GGG - chr3_1:58894361-58894380 None:intergenic 35.0%
TGTGTACGCATGATATTGAT+AGG - chr3_1:58894362-58894381 None:intergenic 35.0%
!! CGTACACAACTTTTAACTCA+AGG + chr3_1:58894374-58894393 Msa0365130:intron 35.0%
TTGGATAGGAAATAGGATAG+TGG + chr3_1:58894562-58894581 Msa0365130:intron 35.0%
!! TGATATATGCTAGTTGATGG+AGG + chr3_1:58894638-58894657 Msa0365130:intron 35.0%
!! GATATATGCTAGTTGATGGA+GGG + chr3_1:58894639-58894658 Msa0365130:intron 35.0%
!! ATATATGCTAGTTGATGGAG+GGG + chr3_1:58894640-58894659 Msa0365130:intron 35.0%
! CAAAAGTGCATTATTTACGG+GGG - chr3_1:58895006-58895025 None:intergenic 35.0%
! GCAAAAGTGCATTATTTACG+GGG - chr3_1:58895007-58895026 None:intergenic 35.0%
! CTTTGGTGTATTCCAATGAA+TGG + chr3_1:58895394-58895413 Msa0365130:CDS 35.0%
!!! GCTGCTTTTAATAAAAGGCT+AGG + chr3_1:58895503-58895522 Msa0365130:three_prime_UTR 35.0%
TTAATGAAATCAGACGAGGA+AGG - chr3_1:58893757-58893776 None:intergenic 35.0%
TTTATCTGATTATCTGGTGC+TGG + chr3_1:58893777-58893796 Msa0365130:CDS 35.0%
AACTGAATCATCAGACAACA+AGG + chr3_1:58893837-58893856 Msa0365130:CDS 35.0%
!! TTAATATCAATGGTGGTGGA+AGG - chr3_1:58893865-58893884 None:intergenic 35.0%
GACATTAATATCAATGGTGG+TGG - chr3_1:58893869-58893888 None:intergenic 35.0%
! GTTATTGTTCTTGTTGGTAG+AGG - chr3_1:58893926-58893945 None:intergenic 35.0%
!! TTTGGATTCTTTGGTTTGAC+AGG + chr3_1:58894035-58894054 Msa0365130:intron 35.0%
AAGAGTAATTACCTTGGGTA+TGG - chr3_1:58894199-58894218 None:intergenic 35.0%
GTGTACGCATGATATTGATA+GGG - chr3_1:58894361-58894380 None:intergenic 35.0%
TGTGTACGCATGATATTGAT+AGG - chr3_1:58894362-58894381 None:intergenic 35.0%
!! CGTACACAACTTTTAACTCA+AGG + chr3_1:58894374-58894393 Msa0365130:intron 35.0%
TTGGATAGGAAATAGGATAG+TGG + chr3_1:58894562-58894581 Msa0365130:intron 35.0%
!! TGATATATGCTAGTTGATGG+AGG + chr3_1:58894638-58894657 Msa0365130:intron 35.0%
!! GATATATGCTAGTTGATGGA+GGG + chr3_1:58894639-58894658 Msa0365130:intron 35.0%
!! ATATATGCTAGTTGATGGAG+GGG + chr3_1:58894640-58894659 Msa0365130:intron 35.0%
! CAAAAGTGCATTATTTACGG+GGG - chr3_1:58895006-58895025 None:intergenic 35.0%
! GCAAAAGTGCATTATTTACG+GGG - chr3_1:58895007-58895026 None:intergenic 35.0%
! CTTTGGTGTATTCCAATGAA+TGG + chr3_1:58895394-58895413 Msa0365130:CDS 35.0%
!!! GCTGCTTTTAATAAAAGGCT+AGG + chr3_1:58895503-58895522 Msa0365130:three_prime_UTR 35.0%
GAATGTTGGTCACAAAGTAC+AGG + chr3_1:58893814-58893833 Msa0365130:CDS 40.0%
TTGACAGGAAACGTAAAAGC+AGG + chr3_1:58894050-58894069 Msa0365130:intron 40.0%
TGACAGGAAACGTAAAAGCA+GGG + chr3_1:58894051-58894070 Msa0365130:intron 40.0%
! TCGTTCTAAACGTCACTCTT+GGG - chr3_1:58894105-58894124 None:intergenic 40.0%
CAGCTTGAGATTATGGATGA+TGG + chr3_1:58894130-58894149 Msa0365130:CDS 40.0%
!! TGGATGATGGATTCAAATGG+AGG + chr3_1:58894143-58894162 Msa0365130:CDS 40.0%
GGATTCAAATGGAGGAAGTA+TGG + chr3_1:58894151-58894170 Msa0365130:CDS 40.0%
TCAAGAATAGTCCATACCCA+AGG + chr3_1:58894185-58894204 Msa0365130:CDS 40.0%
TATGACGTATGTAGCCAAGA+AGG - chr3_1:58894248-58894267 None:intergenic 40.0%
! GATAGGAAATAGGATAGTGG+TGG + chr3_1:58894565-58894584 Msa0365130:intron 40.0%
GGCTGATATATGCTAGTTGA+TGG + chr3_1:58894635-58894654 Msa0365130:intron 40.0%
!! TATATGCTAGTTGATGGAGG+GGG + chr3_1:58894641-58894660 Msa0365130:intron 40.0%
TGGTTTCCATTTGTTTGTCC+TGG + chr3_1:58894846-58894865 Msa0365130:intron 40.0%
TCGATTCCAGGACAAACAAA+TGG - chr3_1:58894855-58894874 None:intergenic 40.0%
!! CTACTACTTTTCTCGATTCC+AGG - chr3_1:58894867-58894886 None:intergenic 40.0%
AGATGTGCACATATACATGC+AGG + chr3_1:58895229-58895248 Msa0365130:intron 40.0%
AGGAACTACTACAAGTGTTC+AGG + chr3_1:58895249-58895268 Msa0365130:intron 40.0%
TACTACAAGTGTTCAGGTGA+AGG + chr3_1:58895255-58895274 Msa0365130:CDS 40.0%
AAGGATGTGGTGTGAAGAAA+AGG + chr3_1:58895274-58895293 Msa0365130:CDS 40.0%
AGGATGTGGTGTGAAGAAAA+GGG + chr3_1:58895275-58895294 Msa0365130:CDS 40.0%
TGTGAAGAAAAGGGTGGAAA+GGG + chr3_1:58895284-58895303 Msa0365130:CDS 40.0%
TGGAATACACCAAAGACACT+GGG - chr3_1:58895389-58895408 None:intergenic 40.0%
TTGGAATACACCAAAGACAC+TGG - chr3_1:58895390-58895409 None:intergenic 40.0%
GAATGTTGGTCACAAAGTAC+AGG + chr3_1:58893814-58893833 Msa0365130:CDS 40.0%
TTGACAGGAAACGTAAAAGC+AGG + chr3_1:58894050-58894069 Msa0365130:intron 40.0%
TGACAGGAAACGTAAAAGCA+GGG + chr3_1:58894051-58894070 Msa0365130:intron 40.0%
! TCGTTCTAAACGTCACTCTT+GGG - chr3_1:58894105-58894124 None:intergenic 40.0%
CAGCTTGAGATTATGGATGA+TGG + chr3_1:58894130-58894149 Msa0365130:CDS 40.0%
!! TGGATGATGGATTCAAATGG+AGG + chr3_1:58894143-58894162 Msa0365130:CDS 40.0%
GGATTCAAATGGAGGAAGTA+TGG + chr3_1:58894151-58894170 Msa0365130:CDS 40.0%
TCAAGAATAGTCCATACCCA+AGG + chr3_1:58894185-58894204 Msa0365130:CDS 40.0%
TATGACGTATGTAGCCAAGA+AGG - chr3_1:58894248-58894267 None:intergenic 40.0%
! GATAGGAAATAGGATAGTGG+TGG + chr3_1:58894565-58894584 Msa0365130:intron 40.0%
GGCTGATATATGCTAGTTGA+TGG + chr3_1:58894635-58894654 Msa0365130:intron 40.0%
!! TATATGCTAGTTGATGGAGG+GGG + chr3_1:58894641-58894660 Msa0365130:intron 40.0%
TGGTTTCCATTTGTTTGTCC+TGG + chr3_1:58894846-58894865 Msa0365130:intron 40.0%
TCGATTCCAGGACAAACAAA+TGG - chr3_1:58894855-58894874 None:intergenic 40.0%
!! CTACTACTTTTCTCGATTCC+AGG - chr3_1:58894867-58894886 None:intergenic 40.0%
AGATGTGCACATATACATGC+AGG + chr3_1:58895229-58895248 Msa0365130:intron 40.0%
AGGAACTACTACAAGTGTTC+AGG + chr3_1:58895249-58895268 Msa0365130:intron 40.0%
TACTACAAGTGTTCAGGTGA+AGG + chr3_1:58895255-58895274 Msa0365130:CDS 40.0%
AAGGATGTGGTGTGAAGAAA+AGG + chr3_1:58895274-58895293 Msa0365130:CDS 40.0%
AGGATGTGGTGTGAAGAAAA+GGG + chr3_1:58895275-58895294 Msa0365130:CDS 40.0%
TGTGAAGAAAAGGGTGGAAA+GGG + chr3_1:58895284-58895303 Msa0365130:CDS 40.0%
TGGAATACACCAAAGACACT+GGG - chr3_1:58895389-58895408 None:intergenic 40.0%
TTGGAATACACCAAAGACAC+TGG - chr3_1:58895390-58895409 None:intergenic 40.0%
ATGAAATCAGACGAGGAAGG+AGG - chr3_1:58893754-58893773 None:intergenic 45.0%
ACGTAAAAGCAGGGAGATGA+AGG + chr3_1:58894060-58894079 Msa0365130:CDS 45.0%
! CTCGTTCTAAACGTCACTCT+TGG - chr3_1:58894106-58894125 None:intergenic 45.0%
GAGATCGCAGCTTGAGATTA+TGG + chr3_1:58894123-58894142 Msa0365130:CDS 45.0%
! AGTCGAAGTCCTAAGAGCAT+TGG - chr3_1:58894523-58894542 None:intergenic 45.0%
! AGGAAATAGGATAGTGGTGG+TGG + chr3_1:58894568-58894587 Msa0365130:intron 45.0%
! GGAAATAGGATAGTGGTGGT+GGG + chr3_1:58894569-58894588 Msa0365130:intron 45.0%
ACACGCTAGCTCAACAAGTA+GGG - chr3_1:58894819-58894838 None:intergenic 45.0%
TACACGCTAGCTCAACAAGT+AGG - chr3_1:58894820-58894839 None:intergenic 45.0%
TGAGCTAGCGTGTATATGTG+TGG + chr3_1:58894826-58894845 Msa0365130:intron 45.0%
AAGAGAGAGATTCTGTGCAC+TGG + chr3_1:58895070-58895089 Msa0365130:intron 45.0%
AGAGAGAGATTCTGTGCACT+GGG + chr3_1:58895071-58895090 Msa0365130:intron 45.0%
GGACTGTTGTTGATCTCATC+AGG + chr3_1:58895092-58895111 Msa0365130:intron 45.0%
CTGTTGTTGATCTCATCAGG+TGG + chr3_1:58895095-58895114 Msa0365130:intron 45.0%
AAGTGTTCAGGTGAAGGATG+TGG + chr3_1:58895261-58895280 Msa0365130:CDS 45.0%
ATGTGGTGTGAAGAAAAGGG+TGG + chr3_1:58895278-58895297 Msa0365130:CDS 45.0%
GTGTGAAGAAAAGGGTGGAA+AGG + chr3_1:58895283-58895302 Msa0365130:CDS 45.0%
AGAAAAGGGTGGAAAGGGAT+AGG + chr3_1:58895289-58895308 Msa0365130:CDS 45.0%
GAAAAGGGTGGAAAGGGATA+GGG + chr3_1:58895290-58895309 Msa0365130:CDS 45.0%
GGGTACAGTATGAATTGCAG+GGG - chr3_1:58895368-58895387 None:intergenic 45.0%
GGGGTACAGTATGAATTGCA+GGG - chr3_1:58895369-58895388 None:intergenic 45.0%
TGGGGTACAGTATGAATTGC+AGG - chr3_1:58895370-58895389 None:intergenic 45.0%
ATACTGTACCCCAGTGTCTT+TGG + chr3_1:58895377-58895396 Msa0365130:CDS 45.0%
GGAATACACCAAAGACACTG+GGG - chr3_1:58895388-58895407 None:intergenic 45.0%
TGGAAGAAGAGGTTGCAGAA+GGG - chr3_1:58895431-58895450 None:intergenic 45.0%
TTGGAAGAAGAGGTTGCAGA+AGG - chr3_1:58895432-58895451 None:intergenic 45.0%
ATGAAATCAGACGAGGAAGG+AGG - chr3_1:58893754-58893773 None:intergenic 45.0%
ACGTAAAAGCAGGGAGATGA+AGG + chr3_1:58894060-58894079 Msa0365130:CDS 45.0%
! CTCGTTCTAAACGTCACTCT+TGG - chr3_1:58894106-58894125 None:intergenic 45.0%
GAGATCGCAGCTTGAGATTA+TGG + chr3_1:58894123-58894142 Msa0365130:CDS 45.0%
! AGTCGAAGTCCTAAGAGCAT+TGG - chr3_1:58894523-58894542 None:intergenic 45.0%
! AGGAAATAGGATAGTGGTGG+TGG + chr3_1:58894568-58894587 Msa0365130:intron 45.0%
! GGAAATAGGATAGTGGTGGT+GGG + chr3_1:58894569-58894588 Msa0365130:intron 45.0%
ACACGCTAGCTCAACAAGTA+GGG - chr3_1:58894819-58894838 None:intergenic 45.0%
TACACGCTAGCTCAACAAGT+AGG - chr3_1:58894820-58894839 None:intergenic 45.0%
TGAGCTAGCGTGTATATGTG+TGG + chr3_1:58894826-58894845 Msa0365130:intron 45.0%
AAGAGAGAGATTCTGTGCAC+TGG + chr3_1:58895070-58895089 Msa0365130:intron 45.0%
AGAGAGAGATTCTGTGCACT+GGG + chr3_1:58895071-58895090 Msa0365130:intron 45.0%
GGACTGTTGTTGATCTCATC+AGG + chr3_1:58895092-58895111 Msa0365130:intron 45.0%
CTGTTGTTGATCTCATCAGG+TGG + chr3_1:58895095-58895114 Msa0365130:intron 45.0%
AAGTGTTCAGGTGAAGGATG+TGG + chr3_1:58895261-58895280 Msa0365130:CDS 45.0%
ATGTGGTGTGAAGAAAAGGG+TGG + chr3_1:58895278-58895297 Msa0365130:CDS 45.0%
GTGTGAAGAAAAGGGTGGAA+AGG + chr3_1:58895283-58895302 Msa0365130:CDS 45.0%
AGAAAAGGGTGGAAAGGGAT+AGG + chr3_1:58895289-58895308 Msa0365130:CDS 45.0%
GAAAAGGGTGGAAAGGGATA+GGG + chr3_1:58895290-58895309 Msa0365130:CDS 45.0%
GGGTACAGTATGAATTGCAG+GGG - chr3_1:58895368-58895387 None:intergenic 45.0%
GGGGTACAGTATGAATTGCA+GGG - chr3_1:58895369-58895388 None:intergenic 45.0%
TGGGGTACAGTATGAATTGC+AGG - chr3_1:58895370-58895389 None:intergenic 45.0%
ATACTGTACCCCAGTGTCTT+TGG + chr3_1:58895377-58895396 Msa0365130:CDS 45.0%
GGAATACACCAAAGACACTG+GGG - chr3_1:58895388-58895407 None:intergenic 45.0%
TGGAAGAAGAGGTTGCAGAA+GGG - chr3_1:58895431-58895450 None:intergenic 45.0%
TTGGAAGAAGAGGTTGCAGA+AGG - chr3_1:58895432-58895451 None:intergenic 45.0%
!! ATATATATAAATAAATATTG+TGG + chr3_1:58894611-58894630 Msa0365130:intron 5.0%
!! ATATATATAAATAAATATTG+TGG + chr3_1:58894611-58894630 Msa0365130:intron 5.0%
AAATCAGACGAGGAAGGAGG+AGG - chr3_1:58893751-58893770 None:intergenic 50.0%
!! ATAGTGGTGGTGGGTCTGAT+TGG + chr3_1:58894578-58894597 Msa0365130:intron 50.0%
!! GGACTAGCTAGCTAGCAAGT+GGG - chr3_1:58894985-58895004 None:intergenic 50.0%
CTAGGAAGGTCTGATCGAGT+TGG + chr3_1:58895521-58895540 Msa0365130:three_prime_UTR 50.0%
AAATCAGACGAGGAAGGAGG+AGG - chr3_1:58893751-58893770 None:intergenic 50.0%
!! ATAGTGGTGGTGGGTCTGAT+TGG + chr3_1:58894578-58894597 Msa0365130:intron 50.0%
!! GGACTAGCTAGCTAGCAAGT+GGG - chr3_1:58894985-58895004 None:intergenic 50.0%
CTAGGAAGGTCTGATCGAGT+TGG + chr3_1:58895521-58895540 Msa0365130:three_prime_UTR 50.0%
!! GGGACTAGCTAGCTAGCAAG+TGG - chr3_1:58894986-58895005 None:intergenic 55.0%
! GTGCTGCTGTGGCCATTCAT+TGG - chr3_1:58895409-58895428 None:intergenic 55.0%
!! GGGACTAGCTAGCTAGCAAG+TGG - chr3_1:58894986-58895005 None:intergenic 55.0%
! GTGCTGCTGTGGCCATTCAT+TGG - chr3_1:58895409-58895428 None:intergenic 55.0%
!! GTTGCAGAAGGGTGCTGCTG+TGG - chr3_1:58895420-58895439 None:intergenic 60.0%
!! GTTGCAGAAGGGTGCTGCTG+TGG - chr3_1:58895420-58895439 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 58893697 58895576 58893697 ID=Msa0365130;Name=Msa0365130
chr3_1 mRNA 58893697 58895576 58893697 ID=Msa0365130-mRNA-1;Parent=Msa0365130;Name=Msa0365130-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.5|0.33|1|1|1|3|121|204
chr3_1 exon 58893697 58893956 58893697 ID=Msa0365130-mRNA-1:exon:11192;Parent=Msa0365130-mRNA-1
chr3_1 exon 58894057 58894206 58894057 ID=Msa0365130-mRNA-1:exon:11193;Parent=Msa0365130-mRNA-1
chr3_1 exon 58895251 58895576 58895251 ID=Msa0365130-mRNA-1:exon:11194;Parent=Msa0365130-mRNA-1
chr3_1 CDS 58893697 58893956 58893697 ID=Msa0365130-mRNA-1:cds;Parent=Msa0365130-mRNA-1
chr3_1 CDS 58894057 58894206 58894057 ID=Msa0365130-mRNA-1:cds;Parent=Msa0365130-mRNA-1
chr3_1 CDS 58895251 58895455 58895251 ID=Msa0365130-mRNA-1:cds;Parent=Msa0365130-mRNA-1
chr3_1 three_prime_UTR 58895456 58895576 58895456 ID=Msa0365130-mRNA-1:three_prime_utr;Parent=Msa0365130-mRNA-1
Gene Sequence

>Msa0365130

ATGTATTTTGGAAACCCTAATTCTAACCCTTATCACAATAATAATATATCTCCTCCTCCTTCCTCGTCTGATTTCATTAATTTATCTGATTATCTGGTGCTGGATGATGAACATCAAGAATGTTGGTCACAAAGTACAGGAACTGAATCATCAGACAACAAGGCACCTTCCACCACCATTGATATTAATGTCATCAATCAAGGATTAATTTGTGATGAAATTGAAACCTCTACCAACAAGAACAATAACATGATGCAAGTGAAACGTAAAAGCAGGGAGATGAAGGAAAATACAGTAGACGTGAGCCCAAGAGTGACGTTTAGAACGAGATCGCAGCTTGAGATTATGGATGATGGATTCAAATGGAGGAAGTATGGAAAGAAGTCTGTCAAGAATAGTCCATACCCAAGGAACTACTACAAGTGTTCAGGTGAAGGATGTGGTGTGAAGAAAAGGGTGGAAAGGGATAGGGAAGATTCAAGCTATGTGTTAACAAGCTATGAAGGTGTTCACAATCATGAGAGCCCCTGCAATTCATACTGTACCCCAGTGTCTTTGGTGTATTCCAATGAATGGCCACAGCAGCACCCTTCTGCAACCTCTTCTTCCAATTAA
Protein sequence

>Msa0365130

MYFGNPNSNPYHNNNISPPPSSSDFINLSDYLVLDDEHQECWSQSTGTESSDNKAPSTTIDINVINQGLICDEIETSTNKNNNMMQVKRKSREMKENTVDVSPRVTFRTRSQLEIMDDGFKWRKYGKKSVKNSPYPRNYYKCSGEGCGVKKRVERDREDSSYVLTSYEGVHNHESPCNSYCTPVSLVYSNEWPQQHPSATSSSN*