Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365300 | XP_003590850.2 | 76.723 | 653 | 93 | 4 | 1 | 594 | 1 | 653 | 0.0 | 948 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365300 | sp|Q9LUZ4|C3H66_ARATH | 49.333 | 600 | 252 | 16 | 21 | 585 | 2 | 584 | 9.70e-174 | 509 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365300 | G7I4W5 | 76.723 | 653 | 93 | 4 | 1 | 594 | 1 | 653 | 0.0 | 948 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0365300 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365300 | MtrunA17_Chr1g0187591 | 76.723 | 653 | 93 | 4 | 1 | 594 | 1 | 653 | 0.0 | 948 |
| Msa0365300 | MtrunA17_Chr3g0105131 | 69.772 | 569 | 106 | 6 | 1 | 566 | 1 | 506 | 0.0 | 736 |
| Msa0365300 | MtrunA17_Chr3g0105101 | 79.439 | 428 | 31 | 4 | 37 | 462 | 29 | 401 | 0.0 | 653 |
| Msa0365300 | MtrunA17_Chr5g0430211 | 52.247 | 712 | 234 | 18 | 1 | 619 | 1 | 699 | 0.0 | 624 |
| Msa0365300 | MtrunA17_Chr5g0437251 | 46.313 | 678 | 254 | 17 | 28 | 619 | 25 | 678 | 0.0 | 530 |
| Msa0365300 | MtrunA17_Chr7g0257831 | 41.088 | 662 | 262 | 16 | 30 | 588 | 44 | 680 | 7.93e-144 | 434 |
| Msa0365300 | MtrunA17_Chr3g0113651 | 43.373 | 581 | 202 | 17 | 31 | 586 | 8 | 486 | 2.36e-136 | 408 |
| Msa0365300 | MtrunA17_Chr3g0088521 | 39.701 | 670 | 271 | 21 | 30 | 590 | 42 | 687 | 6.02e-129 | 396 |
| Msa0365300 | MtrunA17_Chr3g0105121 | 54.301 | 372 | 133 | 7 | 226 | 583 | 8 | 356 | 1.69e-116 | 351 |
| Msa0365300 | MtrunA17_Chr1g0171151 | 41.342 | 462 | 225 | 11 | 32 | 451 | 30 | 487 | 1.19e-102 | 324 |
| Msa0365300 | MtrunA17_Chr3g0092171 | 45.125 | 359 | 170 | 6 | 30 | 376 | 80 | 423 | 3.07e-91 | 291 |
| Msa0365300 | MtrunA17_Chr3g0105151 | 58.921 | 241 | 77 | 7 | 384 | 608 | 1 | 235 | 7.80e-75 | 239 |
| Msa0365300 | MtrunA17_Chr3g0092221 | 59.770 | 174 | 65 | 3 | 204 | 376 | 137 | 306 | 3.40e-69 | 230 |
| Msa0365300 | MtrunA17_Chr3g0105141 | 67.832 | 143 | 45 | 1 | 192 | 333 | 1 | 143 | 2.12e-68 | 219 |
| Msa0365300 | MtrunA17_Chr8g0389561 | 47.273 | 220 | 106 | 3 | 171 | 382 | 25 | 242 | 7.04e-59 | 202 |
| Msa0365300 | MtrunA17_Chr3g0105111 | 78.992 | 119 | 12 | 1 | 501 | 619 | 1 | 106 | 2.19e-58 | 191 |
| Msa0365300 | MtrunA17_Chr6g0487481 | 61.364 | 132 | 42 | 1 | 198 | 329 | 83 | 205 | 2.01e-54 | 189 |
| Msa0365300 | MtrunA17_Chr3g0135351 | 61.940 | 134 | 49 | 2 | 217 | 348 | 43 | 176 | 4.52e-53 | 183 |
| Msa0365300 | MtrunA17_Chr2g0324781 | 62.162 | 111 | 42 | 0 | 227 | 337 | 77 | 187 | 1.03e-48 | 175 |
| Msa0365300 | MtrunA17_Chr4g0040391 | 58.879 | 107 | 44 | 0 | 223 | 329 | 56 | 162 | 3.60e-46 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365300 | AT5G58620.1 | 49.333 | 600 | 252 | 16 | 21 | 585 | 2 | 584 | 9.86e-175 | 509 |
| Msa0365300 | AT2G40140.2 | 47.508 | 602 | 252 | 17 | 1 | 585 | 1 | 555 | 6.34e-165 | 484 |
| Msa0365300 | AT2G40140.1 | 47.508 | 602 | 252 | 17 | 1 | 585 | 1 | 555 | 6.34e-165 | 484 |
| Msa0365300 | AT3G55980.1 | 45.182 | 633 | 273 | 18 | 1 | 618 | 1 | 574 | 2.50e-163 | 479 |
| Msa0365300 | AT3G55980.2 | 45.182 | 633 | 273 | 18 | 1 | 618 | 68 | 641 | 2.50e-162 | 479 |
| Msa0365300 | AT5G12850.1 | 41.491 | 617 | 258 | 19 | 25 | 550 | 34 | 638 | 6.23e-134 | 408 |
| Msa0365300 | AT2G41900.1 | 43.228 | 539 | 244 | 10 | 25 | 525 | 40 | 554 | 3.23e-131 | 402 |
| Msa0365300 | AT4G29190.1 | 47.980 | 198 | 74 | 5 | 216 | 399 | 68 | 250 | 9.98e-55 | 190 |
| Msa0365300 | AT2G25900.2 | 60.465 | 129 | 51 | 0 | 223 | 351 | 86 | 214 | 1.86e-54 | 188 |
| Msa0365300 | AT2G25900.1 | 60.465 | 129 | 51 | 0 | 223 | 351 | 86 | 214 | 1.86e-54 | 188 |
| Msa0365300 | AT2G19810.1 | 63.934 | 122 | 42 | 1 | 212 | 331 | 61 | 182 | 5.22e-53 | 186 |
| Msa0365300 | AT5G07500.1 | 61.983 | 121 | 46 | 0 | 209 | 329 | 34 | 154 | 7.26e-53 | 181 |
| Msa0365300 | AT1G03790.1 | 52.903 | 155 | 65 | 3 | 194 | 344 | 53 | 203 | 2.81e-49 | 176 |
| Msa0365300 | AT5G44260.1 | 58.594 | 128 | 48 | 2 | 205 | 331 | 42 | 165 | 2.38e-47 | 171 |
Find 143 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAAAACCTACTTGTTTA+AGG | 0.075570 | 3_1:-59250299 | None:intergenic |
| GCTCTTCGTTGTGCTGTTTC+TGG | 0.104817 | 3_1:+59250087 | Msa0365300:CDS |
| CTTATGGTTGCTGCCTTATT+TGG | 0.182687 | 3_1:+59249985 | Msa0365300:CDS |
| CTTACCAATTCAAATGTTAT+TGG | 0.199131 | 3_1:+59251161 | Msa0365300:CDS |
| TTGTCAAATTGGTTTGATTA+AGG | 0.199934 | 3_1:+59249774 | Msa0365300:CDS |
| AATAGAAAACCTTGTCAAAT+TGG | 0.218574 | 3_1:+59249763 | Msa0365300:CDS |
| ATCATCTACGCCTTCTAGTA+TGG | 0.227210 | 3_1:-59250259 | None:intergenic |
| TTGATTAAGGAAAATGAATA+TGG | 0.284568 | 3_1:+59249787 | Msa0365300:CDS |
| CACACCCTTGCTTCCAAATA+AGG | 0.291991 | 3_1:-59249998 | None:intergenic |
| ATGAGGAAATCTTATTCTTT+CGG | 0.306520 | 3_1:+59251374 | Msa0365300:CDS |
| ACAGAACCGCGTCGGGATTA+TGG | 0.307094 | 3_1:-59251553 | None:intergenic |
| CAAGGGCTTATTCTCATGAT+TGG | 0.318225 | 3_1:+59250463 | Msa0365300:CDS |
| TTCACAGATGCTGTTGAAAA+AGG | 0.320014 | 3_1:+59249880 | Msa0365300:CDS |
| GTGTCCCTTGCCCCGAGTTT+CGG | 0.333825 | 3_1:+59250556 | Msa0365300:CDS |
| GAACGCAAACCAGCAACTTT+GGG | 0.341182 | 3_1:+59251124 | Msa0365300:CDS |
| CGATCCAATAACATTTGAAT+TGG | 0.345672 | 3_1:-59251165 | None:intergenic |
| GTCTTTCATCCCCTTCAAAT+AGG | 0.355872 | 3_1:+59251021 | Msa0365300:CDS |
| TATTGATCAAATTCCATTGT+TGG | 0.357494 | 3_1:-59251506 | None:intergenic |
| GAGGGTTGGATCGAAGGAAA+TGG | 0.360734 | 3_1:+59249942 | Msa0365300:CDS |
| TTCTCGGCATCTGAAGGGTT+GGG | 0.369174 | 3_1:-59250932 | None:intergenic |
| AATGATAGCCCCAAAGTTGC+TGG | 0.380794 | 3_1:-59251133 | None:intergenic |
| AGAACGCAAACCAGCAACTT+TGG | 0.384644 | 3_1:+59251123 | Msa0365300:CDS |
| TTCACCTAGTGCTTCTTCAA+TGG | 0.396899 | 3_1:+59250788 | Msa0365300:CDS |
| TGAAGAGAGGACACCTCTTA+TGG | 0.399251 | 3_1:+59249969 | Msa0365300:CDS |
| ACTCCATCTTCACCTGCTAC+TGG | 0.414979 | 3_1:+59250870 | Msa0365300:CDS |
| TACTGCGCTCAATAAAGCTT+TGG | 0.415479 | 3_1:-59251223 | None:intergenic |
| AAGTCGATGAGGTAGGATTA+TGG | 0.417281 | 3_1:+59249911 | Msa0365300:CDS |
| TCTGGTTGGGGCTCGCCTGA+TGG | 0.418795 | 3_1:+59251311 | Msa0365300:CDS |
| GTATCTTCGGTTCAAGGAAT+AGG | 0.421539 | 3_1:+59250226 | Msa0365300:CDS |
| AGGGTTGGATCGAAGGAAAT+GGG | 0.426387 | 3_1:+59249943 | Msa0365300:CDS |
| CTAGTAGTATCTTCGGTTCA+AGG | 0.426572 | 3_1:+59250220 | Msa0365300:CDS |
| ATCTGTTTCTCGGCATCTGA+AGG | 0.426852 | 3_1:-59250938 | None:intergenic |
| GGTGTGTTGTCTTATATTCT+CGG | 0.428366 | 3_1:+59250015 | Msa0365300:CDS |
| CGAGTGTCCATTTGTTCACC+CGG | 0.428988 | 3_1:+59250488 | Msa0365300:CDS |
| TCAAAGTGAAGCCTTGTTCA+AGG | 0.431149 | 3_1:+59250445 | Msa0365300:CDS |
| GCATGATCCTTTCCGAAACT+CGG | 0.433294 | 3_1:-59250568 | None:intergenic |
| TTGAAAACTGCACTGAATGC+TGG | 0.433495 | 3_1:+59250960 | Msa0365300:CDS |
| TTTCTCGGCATCTGAAGGGT+TGG | 0.435722 | 3_1:-59250933 | None:intergenic |
| GCAAACCCTTCTGGTGCATC+CGG | 0.443581 | 3_1:-59250682 | None:intergenic |
| TATATCTCATTGTTTATGTC+AGG | 0.444342 | 3_1:-59250393 | None:intergenic |
| TGCCACATGGTTCCAGTAGC+AGG | 0.445009 | 3_1:-59250882 | None:intergenic |
| TTATGGTATGGAAGGAGGGT+TGG | 0.455006 | 3_1:+59249928 | Msa0365300:CDS |
| TAATCTTTCTTCTCAGTTCG+AGG | 0.455693 | 3_1:-59250351 | None:intergenic |
| TTCTGCTACCTCAGTTGCCA+TGG | 0.455972 | 3_1:+59251274 | Msa0365300:CDS |
| CCATTGATGTGAATGATAAC+TGG | 0.461223 | 3_1:+59250172 | Msa0365300:CDS |
| TGTGAAGGATGCTCCAACAA+TGG | 0.461854 | 3_1:+59251493 | Msa0365300:CDS |
| CCCTATCTGAGCCGCACTCT+CGG | 0.465985 | 3_1:-59250059 | None:intergenic |
| GGCAAAGACAGAACCGCGTC+GGG | 0.470484 | 3_1:-59251560 | None:intergenic |
| TGGAAGGAGGGTTGGATCGA+AGG | 0.473211 | 3_1:+59249936 | Msa0365300:CDS |
| TGCTGCCTTATTTGGAAGCA+AGG | 0.473427 | 3_1:+59249993 | Msa0365300:CDS |
| ACTCTTGCAAGCCTATTTGA+AGG | 0.473796 | 3_1:-59251032 | None:intergenic |
| CCAGTTATCATTCACATCAA+TGG | 0.477903 | 3_1:-59250172 | None:intergenic |
| AATAAGGCAGCAACCATAAG+AGG | 0.478339 | 3_1:-59249982 | None:intergenic |
| ATTGAGTTCATTGCCGCGGA+TGG | 0.478340 | 3_1:-59251348 | None:intergenic |
| ATACTACAACCCATACTAGA+AGG | 0.480130 | 3_1:+59250249 | Msa0365300:CDS |
| GAATGCCATTACGTCATCTT+CGG | 0.481296 | 3_1:-59249860 | None:intergenic |
| TGCTCCATGTACAAATGCTC+TGG | 0.486006 | 3_1:-59251581 | None:intergenic |
| CAGGTGTAATGATATTTCCT+TGG | 0.486054 | 3_1:-59250534 | None:intergenic |
| AGGCTTTGCAAGGATGGAAC+CGG | 0.489237 | 3_1:+59250663 | Msa0365300:CDS |
| CGACCGTTGTATGCTTCTAC+CGG | 0.490079 | 3_1:+59250732 | Msa0365300:CDS |
| AGAACAAGGCTTTGCAAGGA+TGG | 0.491396 | 3_1:+59250657 | Msa0365300:CDS |
| GTCAAAGGTGGCGTTGGTGC+AGG | 0.494021 | 3_1:-59250849 | None:intergenic |
| TCGGTTAACATCAACGCGAC+TGG | 0.494406 | 3_1:-59250040 | None:intergenic |
| CATGATCCTTTCCGAAACTC+GGG | 0.495650 | 3_1:-59250567 | None:intergenic |
| AGCCTTGTTCTATATTGAGC+AGG | 0.500362 | 3_1:-59250645 | None:intergenic |
| ACCGAGAGTGCGGCTCAGAT+AGG | 0.501399 | 3_1:+59250058 | Msa0365300:CDS |
| TTTGCCAGAGCATTTGTACA+TGG | 0.501745 | 3_1:+59251577 | Msa0365300:CDS |
| AGGTGAAGGCAAAGCAGAAC+CGG | 0.502979 | 3_1:-59250751 | None:intergenic |
| CTCATTGTTTATGTCAGGTA+GGG | 0.505295 | 3_1:-59250388 | None:intergenic |
| TCGGTATCTAGTAGTATCTT+CGG | 0.509155 | 3_1:+59250213 | Msa0365300:CDS |
| GATGATTTCCTTAAACAAGT+AGG | 0.511967 | 3_1:+59250291 | Msa0365300:CDS |
| CCTTTCCGAAACTCGGGGCA+AGG | 0.514381 | 3_1:-59250561 | None:intergenic |
| GTTCCAGTAGCAGGTGAAGA+TGG | 0.516449 | 3_1:-59250873 | None:intergenic |
| CTCTTGCAAGCCTATTTGAA+GGG | 0.516540 | 3_1:-59251031 | None:intergenic |
| CAAAGTGAAGCCTTGTTCAA+GGG | 0.517860 | 3_1:+59250446 | Msa0365300:CDS |
| TAGGATTATGGTATGGAAGG+AGG | 0.520921 | 3_1:+59249923 | Msa0365300:CDS |
| TTGGGTTAATTCTCTTGTGA+AGG | 0.520969 | 3_1:+59251478 | Msa0365300:CDS |
| AGGTAGGATTATGGTATGGA+AGG | 0.522426 | 3_1:+59249920 | Msa0365300:CDS |
| TCAGGTAGGGATGGATCAAT+CGG | 0.525749 | 3_1:-59250375 | None:intergenic |
| AGGATTATGGTATGGAAGGA+GGG | 0.525824 | 3_1:+59249924 | Msa0365300:CDS |
| CGCCTGATGGAAAATTAGAC+TGG | 0.526081 | 3_1:+59251324 | Msa0365300:CDS |
| CCCAACCAGAAAACGTAGAA+TGG | 0.528234 | 3_1:-59251298 | None:intergenic |
| AAACTCGGGGCAAGGGACAC+AGG | 0.532559 | 3_1:-59250553 | None:intergenic |
| TTCAGCCGAAGATGACGTAA+TGG | 0.534190 | 3_1:+59249855 | Msa0365300:CDS |
| TTGTTTATGTCAGGTAGGGA+TGG | 0.536185 | 3_1:-59250384 | None:intergenic |
| GCAGGTGAAGATGGAGTCAA+AGG | 0.537833 | 3_1:-59250864 | None:intergenic |
| CCGAGAGTGCGGCTCAGATA+GGG | 0.539522 | 3_1:+59250059 | Msa0365300:CDS |
| ACGCAAGGCGCCGTGATCCA+AGG | 0.541532 | 3_1:+59250517 | Msa0365300:CDS |
| GCTGCCTTATTTGGAAGCAA+GGG | 0.541989 | 3_1:+59249994 | Msa0365300:CDS |
| CTTTATTGAGCGCAGTAGCA+TGG | 0.542504 | 3_1:+59251229 | Msa0365300:CDS |
| TCTCATTGTTTATGTCAGGT+AGG | 0.546336 | 3_1:-59250389 | None:intergenic |
| AAGCAAAAGCTTGATAATCT+CGG | 0.547575 | 3_1:-59250127 | None:intergenic |
| TCATCTACGCCTTCTAGTAT+GGG | 0.552732 | 3_1:-59250258 | None:intergenic |
| CGGGTGAACAAATGGACACT+CGG | 0.558339 | 3_1:-59250487 | None:intergenic |
| GCTTTGGCTTTGCTTTGAGA+AGG | 0.560903 | 3_1:-59251207 | None:intergenic |
| TCTGTTTCTCGGCATCTGAA+GGG | 0.564138 | 3_1:-59250937 | None:intergenic |
| GTGCAACGACTTGTTTGTCT+CGG | 0.565690 | 3_1:+59250194 | Msa0365300:CDS |
| GATGAGGTAGGATTATGGTA+TGG | 0.568486 | 3_1:+59249916 | Msa0365300:CDS |
| CGGAAAGGATCATGCAGCAA+AGG | 0.576344 | 3_1:+59250576 | Msa0365300:CDS |
| CTTTCCGAAACTCGGGGCAA+GGG | 0.578389 | 3_1:-59250560 | None:intergenic |
| GTGGAGCAGCAACACGATGT+AGG | 0.579328 | 3_1:+59250324 | Msa0365300:CDS |
| GGTGAATTTGAATATGATGT+AGG | 0.581011 | 3_1:-59250771 | None:intergenic |
| CCTTGCCCCGAGTTTCGGAA+AGG | 0.584921 | 3_1:+59250561 | Msa0365300:CDS |
| GATGGAGTCAAAGGTGGCGT+TGG | 0.587180 | 3_1:-59250855 | None:intergenic |
| ATATAGAACAAGGCTTTGCA+AGG | 0.588932 | 3_1:+59250653 | Msa0365300:CDS |
| GCAATGAACTCAATAAAATG+AGG | 0.593274 | 3_1:+59251357 | Msa0365300:CDS |
| AATGATATTTCCTTGGATCA+CGG | 0.593424 | 3_1:-59250527 | None:intergenic |
| GAGTGTCCATTTGTTCACCC+GGG | 0.599662 | 3_1:+59250489 | Msa0365300:CDS |
| AAATAATAAGTCATGTGCAA+CGG | 0.601617 | 3_1:+59249736 | None:intergenic |
| ATGGAACCGGATGCACCAGA+AGG | 0.605474 | 3_1:+59250676 | Msa0365300:CDS |
| TGGCAAAGACAGAACCGCGT+CGG | 0.609621 | 3_1:-59251561 | None:intergenic |
| TCTTGCAAGCCTATTTGAAG+GGG | 0.615140 | 3_1:-59251030 | None:intergenic |
| TGATGCATCTGCATTGTGGT+CGG | 0.616664 | 3_1:-59251101 | None:intergenic |
| AGTGTCCATTTGTTCACCCG+GGG | 0.625388 | 3_1:+59250490 | Msa0365300:CDS |
| TGAGAATAAGCCCTTGAACA+AGG | 0.627841 | 3_1:-59250456 | None:intergenic |
| AACGCAAACCAGCAACTTTG+GGG | 0.628398 | 3_1:+59251125 | Msa0365300:CDS |
| GAACATGAAGTCGATGAGGT+AGG | 0.628445 | 3_1:+59249904 | Msa0365300:CDS |
| ATGGCAACTGAGGTAGCAGA+AGG | 0.630100 | 3_1:-59251272 | None:intergenic |
| GAATCCATTGAAGAAGCACT+AGG | 0.630832 | 3_1:-59250792 | None:intergenic |
| CTGAATCTGAGTCTGCCACA+TGG | 0.636502 | 3_1:-59250895 | None:intergenic |
| TTTGAATATGATGTAGGTGA+AGG | 0.636602 | 3_1:-59250765 | None:intergenic |
| GGTGAAGATGGAGTCAAAGG+TGG | 0.638390 | 3_1:-59250861 | None:intergenic |
| AGAAAACGTAGAATGGTCCA+TGG | 0.639813 | 3_1:-59251291 | None:intergenic |
| ATCCTGCTCAATATAGAACA+AGG | 0.645051 | 3_1:+59250643 | Msa0365300:CDS |
| AAGGCATCTACTCTGAATTG+TGG | 0.646979 | 3_1:-59251188 | None:intergenic |
| TGGAACCGGATGCACCAGAA+GGG | 0.647933 | 3_1:+59250677 | Msa0365300:CDS |
| AGGAAATGGGATATGAAGAG+AGG | 0.649200 | 3_1:+59249956 | Msa0365300:CDS |
| AGAATGGTCCATGGCAACTG+AGG | 0.649316 | 3_1:-59251282 | None:intergenic |
| TTAATCAAACCAATTTGACA+AGG | 0.651854 | 3_1:-59249772 | None:intergenic |
| GCAGGTTGTATCGAAGAAGA+CGG | 0.652748 | 3_1:-59250831 | None:intergenic |
| AAAATACATCTGGATCGTCG+AGG | 0.656511 | 3_1:-59251442 | None:intergenic |
| AAATTAGACTGGTCCATCCG+CGG | 0.659387 | 3_1:+59251335 | Msa0365300:CDS |
| ATGATCCTTTCCGAAACTCG+GGG | 0.664716 | 3_1:-59250566 | None:intergenic |
| GTTGATGTTAACCGAGAGTG+CGG | 0.666864 | 3_1:+59250048 | Msa0365300:CDS |
| GTTCTGATGCATCTGCATTG+TGG | 0.668109 | 3_1:-59251105 | None:intergenic |
| AGAAACAGCACAACGAAGAG+CGG | 0.669641 | 3_1:-59250085 | None:intergenic |
| AGGCGAACATGAAGTCGATG+AGG | 0.683016 | 3_1:+59249900 | Msa0365300:CDS |
| TTGAAGGGGATGAAAGACTG+AGG | 0.712422 | 3_1:-59251016 | None:intergenic |
| GTGTCCATTTGTTCACCCGG+GGG | 0.714093 | 3_1:+59250491 | Msa0365300:CDS |
| CACCTGCTACTGGAACCATG+TGG | 0.752685 | 3_1:+59250880 | Msa0365300:CDS |
| GATGCTTGTGAATATGCACA+TGG | 0.757069 | 3_1:+59250600 | Msa0365300:CDS |
| GAACCGGTAGAAGCATACAA+CGG | 0.780700 | 3_1:-59250735 | None:intergenic |
| GCAGTGCCATAATCCCGACG+CGG | 0.838635 | 3_1:+59251547 | Msa0365300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGATTAAGGAAAATGAATA+TGG | + | chr3_1:59249787-59249806 | Msa0365300:CDS | 20.0% |
| !! | TTGATTAAGGAAAATGAATA+TGG | + | chr3_1:59249787-59249806 | Msa0365300:CDS | 20.0% |
| ! | AATAGAAAACCTTGTCAAAT+TGG | + | chr3_1:59249763-59249782 | Msa0365300:CDS | 25.0% |
| ! | TTAATCAAACCAATTTGACA+AGG | - | chr3_1:59249775-59249794 | None:intergenic | 25.0% |
| !!! | TTGTCAAATTGGTTTGATTA+AGG | + | chr3_1:59249774-59249793 | Msa0365300:CDS | 25.0% |
| ! | ATTGAAAACCTACTTGTTTA+AGG | - | chr3_1:59250302-59250321 | None:intergenic | 25.0% |
| !! | TAAACAAGTAGGTTTTCAAT+TGG | + | chr3_1:59250302-59250321 | Msa0365300:CDS | 25.0% |
| ! | TATATCTCATTGTTTATGTC+AGG | - | chr3_1:59250396-59250415 | None:intergenic | 25.0% |
| !!! | AAAAAGTTTTCAAGGTTAGT+AGG | - | chr3_1:59251062-59251081 | None:intergenic | 25.0% |
| !! | ACTAACCTTGAAAACTTTTT+CGG | + | chr3_1:59251062-59251081 | Msa0365300:CDS | 25.0% |
| ! | CTTACCAATTCAAATGTTAT+TGG | + | chr3_1:59251161-59251180 | Msa0365300:CDS | 25.0% |
| ! | ATGAGGAAATCTTATTCTTT+CGG | + | chr3_1:59251374-59251393 | Msa0365300:CDS | 25.0% |
| !!! | TATTTTTAAGGCATGAATCT+TGG | + | chr3_1:59251459-59251478 | Msa0365300:CDS | 25.0% |
| !!! | ATTTTTAAGGCATGAATCTT+GGG | + | chr3_1:59251460-59251479 | Msa0365300:CDS | 25.0% |
| ! | TATTGATCAAATTCCATTGT+TGG | - | chr3_1:59251509-59251528 | None:intergenic | 25.0% |
| ! | AATAGAAAACCTTGTCAAAT+TGG | + | chr3_1:59249763-59249782 | Msa0365300:CDS | 25.0% |
| ! | TTAATCAAACCAATTTGACA+AGG | - | chr3_1:59249775-59249794 | None:intergenic | 25.0% |
| !!! | TTGTCAAATTGGTTTGATTA+AGG | + | chr3_1:59249774-59249793 | Msa0365300:CDS | 25.0% |
| ! | ATTGAAAACCTACTTGTTTA+AGG | - | chr3_1:59250302-59250321 | None:intergenic | 25.0% |
| !! | TAAACAAGTAGGTTTTCAAT+TGG | + | chr3_1:59250302-59250321 | Msa0365300:CDS | 25.0% |
| ! | TATATCTCATTGTTTATGTC+AGG | - | chr3_1:59250396-59250415 | None:intergenic | 25.0% |
| !!! | AAAAAGTTTTCAAGGTTAGT+AGG | - | chr3_1:59251062-59251081 | None:intergenic | 25.0% |
| !! | ACTAACCTTGAAAACTTTTT+CGG | + | chr3_1:59251062-59251081 | Msa0365300:CDS | 25.0% |
| ! | CTTACCAATTCAAATGTTAT+TGG | + | chr3_1:59251161-59251180 | Msa0365300:CDS | 25.0% |
| ! | ATGAGGAAATCTTATTCTTT+CGG | + | chr3_1:59251374-59251393 | Msa0365300:CDS | 25.0% |
| !!! | TATTTTTAAGGCATGAATCT+TGG | + | chr3_1:59251459-59251478 | Msa0365300:CDS | 25.0% |
| !!! | ATTTTTAAGGCATGAATCTT+GGG | + | chr3_1:59251460-59251479 | Msa0365300:CDS | 25.0% |
| ! | TATTGATCAAATTCCATTGT+TGG | - | chr3_1:59251509-59251528 | None:intergenic | 25.0% |
| ! | AAGCAAAAGCTTGATAATCT+CGG | - | chr3_1:59250130-59250149 | None:intergenic | 30.0% |
| GATGATTTCCTTAAACAAGT+AGG | + | chr3_1:59250291-59250310 | Msa0365300:CDS | 30.0% | |
| AATGATATTTCCTTGGATCA+CGG | - | chr3_1:59250530-59250549 | None:intergenic | 30.0% | |
| TTTGAATATGATGTAGGTGA+AGG | - | chr3_1:59250768-59250787 | None:intergenic | 30.0% | |
| GGTGAATTTGAATATGATGT+AGG | - | chr3_1:59250774-59250793 | None:intergenic | 30.0% | |
| !! | CTAACCTTGAAAACTTTTTC+GGG | + | chr3_1:59251063-59251082 | Msa0365300:CDS | 30.0% |
| CGATCCAATAACATTTGAAT+TGG | - | chr3_1:59251168-59251187 | None:intergenic | 30.0% | |
| GCAATGAACTCAATAAAATG+AGG | + | chr3_1:59251357-59251376 | Msa0365300:CDS | 30.0% | |
| !! | ACGATCCAGATGTATTTTTA+AGG | + | chr3_1:59251447-59251466 | Msa0365300:CDS | 30.0% |
| TCATGCCTTAAAAATACATC+TGG | - | chr3_1:59251455-59251474 | None:intergenic | 30.0% | |
| ! | AAGCAAAAGCTTGATAATCT+CGG | - | chr3_1:59250130-59250149 | None:intergenic | 30.0% |
| GATGATTTCCTTAAACAAGT+AGG | + | chr3_1:59250291-59250310 | Msa0365300:CDS | 30.0% | |
| AATGATATTTCCTTGGATCA+CGG | - | chr3_1:59250530-59250549 | None:intergenic | 30.0% | |
| TTTGAATATGATGTAGGTGA+AGG | - | chr3_1:59250768-59250787 | None:intergenic | 30.0% | |
| GGTGAATTTGAATATGATGT+AGG | - | chr3_1:59250774-59250793 | None:intergenic | 30.0% | |
| !! | CTAACCTTGAAAACTTTTTC+GGG | + | chr3_1:59251063-59251082 | Msa0365300:CDS | 30.0% |
| CGATCCAATAACATTTGAAT+TGG | - | chr3_1:59251168-59251187 | None:intergenic | 30.0% | |
| GCAATGAACTCAATAAAATG+AGG | + | chr3_1:59251357-59251376 | Msa0365300:CDS | 30.0% | |
| !! | ACGATCCAGATGTATTTTTA+AGG | + | chr3_1:59251447-59251466 | Msa0365300:CDS | 30.0% |
| TCATGCCTTAAAAATACATC+TGG | - | chr3_1:59251455-59251474 | None:intergenic | 30.0% | |
| TTCACAGATGCTGTTGAAAA+AGG | + | chr3_1:59249880-59249899 | Msa0365300:CDS | 35.0% | |
| GGTGTGTTGTCTTATATTCT+CGG | + | chr3_1:59250015-59250034 | Msa0365300:CDS | 35.0% | |
| CCAGTTATCATTCACATCAA+TGG | - | chr3_1:59250175-59250194 | None:intergenic | 35.0% | |
| CCATTGATGTGAATGATAAC+TGG | + | chr3_1:59250172-59250191 | Msa0365300:CDS | 35.0% | |
| TCGGTATCTAGTAGTATCTT+CGG | + | chr3_1:59250213-59250232 | Msa0365300:CDS | 35.0% | |
| ATACTACAACCCATACTAGA+AGG | + | chr3_1:59250249-59250268 | Msa0365300:CDS | 35.0% | |
| ! | ACAAGTAGGTTTTCAATTGG+TGG | + | chr3_1:59250305-59250324 | Msa0365300:CDS | 35.0% |
| TAATCTTTCTTCTCAGTTCG+AGG | - | chr3_1:59250354-59250373 | None:intergenic | 35.0% | |
| CTCATTGTTTATGTCAGGTA+GGG | - | chr3_1:59250391-59250410 | None:intergenic | 35.0% | |
| TCTCATTGTTTATGTCAGGT+AGG | - | chr3_1:59250392-59250411 | None:intergenic | 35.0% | |
| CAGGTGTAATGATATTTCCT+TGG | - | chr3_1:59250537-59250556 | None:intergenic | 35.0% | |
| !! | CACATGGTATTTTTGAATGC+TGG | + | chr3_1:59250616-59250635 | Msa0365300:CDS | 35.0% |
| ATCCTGCTCAATATAGAACA+AGG | + | chr3_1:59250643-59250662 | Msa0365300:CDS | 35.0% | |
| ATATAGAACAAGGCTTTGCA+AGG | + | chr3_1:59250653-59250672 | Msa0365300:CDS | 35.0% | |
| !!! | CTTTTTTGCTCACAAATCAG+AGG | + | chr3_1:59250704-59250723 | Msa0365300:CDS | 35.0% |
| !! | GCAGTTTTCAATCTGTTTCT+CGG | - | chr3_1:59250951-59250970 | None:intergenic | 35.0% |
| ! | ATGACCCGAAAAAGTTTTCA+AGG | - | chr3_1:59251070-59251089 | None:intergenic | 35.0% |
| ! | TTTTATTGAGTTCATTGCCG+CGG | - | chr3_1:59251355-59251374 | None:intergenic | 35.0% |
| TTGGGTTAATTCTCTTGTGA+AGG | + | chr3_1:59251478-59251497 | Msa0365300:CDS | 35.0% | |
| TTCACAGATGCTGTTGAAAA+AGG | + | chr3_1:59249880-59249899 | Msa0365300:CDS | 35.0% | |
| GGTGTGTTGTCTTATATTCT+CGG | + | chr3_1:59250015-59250034 | Msa0365300:CDS | 35.0% | |
| CCAGTTATCATTCACATCAA+TGG | - | chr3_1:59250175-59250194 | None:intergenic | 35.0% | |
| CCATTGATGTGAATGATAAC+TGG | + | chr3_1:59250172-59250191 | Msa0365300:CDS | 35.0% | |
| TCGGTATCTAGTAGTATCTT+CGG | + | chr3_1:59250213-59250232 | Msa0365300:CDS | 35.0% | |
| ATACTACAACCCATACTAGA+AGG | + | chr3_1:59250249-59250268 | Msa0365300:CDS | 35.0% | |
| ! | ACAAGTAGGTTTTCAATTGG+TGG | + | chr3_1:59250305-59250324 | Msa0365300:CDS | 35.0% |
| TAATCTTTCTTCTCAGTTCG+AGG | - | chr3_1:59250354-59250373 | None:intergenic | 35.0% | |
| CTCATTGTTTATGTCAGGTA+GGG | - | chr3_1:59250391-59250410 | None:intergenic | 35.0% | |
| TCTCATTGTTTATGTCAGGT+AGG | - | chr3_1:59250392-59250411 | None:intergenic | 35.0% | |
| CAGGTGTAATGATATTTCCT+TGG | - | chr3_1:59250537-59250556 | None:intergenic | 35.0% | |
| !! | CACATGGTATTTTTGAATGC+TGG | + | chr3_1:59250616-59250635 | Msa0365300:CDS | 35.0% |
| ATCCTGCTCAATATAGAACA+AGG | + | chr3_1:59250643-59250662 | Msa0365300:CDS | 35.0% | |
| ATATAGAACAAGGCTTTGCA+AGG | + | chr3_1:59250653-59250672 | Msa0365300:CDS | 35.0% | |
| !!! | CTTTTTTGCTCACAAATCAG+AGG | + | chr3_1:59250704-59250723 | Msa0365300:CDS | 35.0% |
| !! | GCAGTTTTCAATCTGTTTCT+CGG | - | chr3_1:59250951-59250970 | None:intergenic | 35.0% |
| ! | ATGACCCGAAAAAGTTTTCA+AGG | - | chr3_1:59251070-59251089 | None:intergenic | 35.0% |
| ! | TTTTATTGAGTTCATTGCCG+CGG | - | chr3_1:59251355-59251374 | None:intergenic | 35.0% |
| TTGGGTTAATTCTCTTGTGA+AGG | + | chr3_1:59251478-59251497 | Msa0365300:CDS | 35.0% | |
| GAATGCCATTACGTCATCTT+CGG | - | chr3_1:59249863-59249882 | None:intergenic | 40.0% | |
| AAGTCGATGAGGTAGGATTA+TGG | + | chr3_1:59249911-59249930 | Msa0365300:CDS | 40.0% | |
| GATGAGGTAGGATTATGGTA+TGG | + | chr3_1:59249916-59249935 | Msa0365300:CDS | 40.0% | |
| AGGTAGGATTATGGTATGGA+AGG | + | chr3_1:59249920-59249939 | Msa0365300:CDS | 40.0% | |
| TAGGATTATGGTATGGAAGG+AGG | + | chr3_1:59249923-59249942 | Msa0365300:CDS | 40.0% | |
| AGGATTATGGTATGGAAGGA+GGG | + | chr3_1:59249924-59249943 | Msa0365300:CDS | 40.0% | |
| AGGAAATGGGATATGAAGAG+AGG | + | chr3_1:59249956-59249975 | Msa0365300:CDS | 40.0% | |
| AATAAGGCAGCAACCATAAG+AGG | - | chr3_1:59249985-59250004 | None:intergenic | 40.0% | |
| ! | CTTATGGTTGCTGCCTTATT+TGG | + | chr3_1:59249985-59250004 | Msa0365300:CDS | 40.0% |
| CTAGTAGTATCTTCGGTTCA+AGG | + | chr3_1:59250220-59250239 | Msa0365300:CDS | 40.0% | |
| GTATCTTCGGTTCAAGGAAT+AGG | + | chr3_1:59250226-59250245 | Msa0365300:CDS | 40.0% | |
| TCATCTACGCCTTCTAGTAT+GGG | - | chr3_1:59250261-59250280 | None:intergenic | 40.0% | |
| ATCATCTACGCCTTCTAGTA+TGG | - | chr3_1:59250262-59250281 | None:intergenic | 40.0% | |
| TTGTTTATGTCAGGTAGGGA+TGG | - | chr3_1:59250387-59250406 | None:intergenic | 40.0% | |
| !! | TCAAAGTGAAGCCTTGTTCA+AGG | + | chr3_1:59250445-59250464 | Msa0365300:CDS | 40.0% |
| !! | CAAAGTGAAGCCTTGTTCAA+GGG | + | chr3_1:59250446-59250465 | Msa0365300:CDS | 40.0% |
| TGAGAATAAGCCCTTGAACA+AGG | - | chr3_1:59250459-59250478 | None:intergenic | 40.0% | |
| CAAGGGCTTATTCTCATGAT+TGG | + | chr3_1:59250463-59250482 | Msa0365300:CDS | 40.0% | |
| GATGCTTGTGAATATGCACA+TGG | + | chr3_1:59250600-59250619 | Msa0365300:CDS | 40.0% | |
| !! | AGCCTTGTTCTATATTGAGC+AGG | - | chr3_1:59250648-59250667 | None:intergenic | 40.0% |
| AGCAAAAAAGCAAACCCTTC+TGG | - | chr3_1:59250694-59250713 | None:intergenic | 40.0% | |
| TTCACCTAGTGCTTCTTCAA+TGG | + | chr3_1:59250788-59250807 | Msa0365300:CDS | 40.0% | |
| !! | GAATCCATTGAAGAAGCACT+AGG | - | chr3_1:59250795-59250814 | None:intergenic | 40.0% |
| TTGAAAACTGCACTGAATGC+TGG | + | chr3_1:59250960-59250979 | Msa0365300:CDS | 40.0% | |
| GTCTTTCATCCCCTTCAAAT+AGG | + | chr3_1:59251021-59251040 | Msa0365300:CDS | 40.0% | |
| TCTTGCAAGCCTATTTGAAG+GGG | - | chr3_1:59251033-59251052 | None:intergenic | 40.0% | |
| CTCTTGCAAGCCTATTTGAA+GGG | - | chr3_1:59251034-59251053 | None:intergenic | 40.0% | |
| ACTCTTGCAAGCCTATTTGA+AGG | - | chr3_1:59251035-59251054 | None:intergenic | 40.0% | |
| ! | AAGGCATCTACTCTGAATTG+TGG | - | chr3_1:59251191-59251210 | None:intergenic | 40.0% |
| TACTGCGCTCAATAAAGCTT+TGG | - | chr3_1:59251226-59251245 | None:intergenic | 40.0% | |
| AGAAAACGTAGAATGGTCCA+TGG | - | chr3_1:59251294-59251313 | None:intergenic | 40.0% | |
| ! | ATGGACCATTCTACGTTTTC+TGG | + | chr3_1:59251293-59251312 | Msa0365300:CDS | 40.0% |
| !! | ACCATTCTACGTTTTCTGGT+TGG | + | chr3_1:59251297-59251316 | Msa0365300:CDS | 40.0% |
| !!! | CCATTCTACGTTTTCTGGTT+GGG | + | chr3_1:59251298-59251317 | Msa0365300:CDS | 40.0% |
| !!! | CATTCTACGTTTTCTGGTTG+GGG | + | chr3_1:59251299-59251318 | Msa0365300:CDS | 40.0% |
| ! | GACCAGTCTAATTTTCCATC+AGG | - | chr3_1:59251329-59251348 | None:intergenic | 40.0% |
| AAAATACATCTGGATCGTCG+AGG | - | chr3_1:59251445-59251464 | None:intergenic | 40.0% | |
| ! | TTTGCCAGAGCATTTGTACA+TGG | + | chr3_1:59251577-59251596 | Msa0365300:CDS | 40.0% |
| GAATGCCATTACGTCATCTT+CGG | - | chr3_1:59249863-59249882 | None:intergenic | 40.0% | |
| AAGTCGATGAGGTAGGATTA+TGG | + | chr3_1:59249911-59249930 | Msa0365300:CDS | 40.0% | |
| GATGAGGTAGGATTATGGTA+TGG | + | chr3_1:59249916-59249935 | Msa0365300:CDS | 40.0% | |
| AGGTAGGATTATGGTATGGA+AGG | + | chr3_1:59249920-59249939 | Msa0365300:CDS | 40.0% | |
| TAGGATTATGGTATGGAAGG+AGG | + | chr3_1:59249923-59249942 | Msa0365300:CDS | 40.0% | |
| AGGATTATGGTATGGAAGGA+GGG | + | chr3_1:59249924-59249943 | Msa0365300:CDS | 40.0% | |
| AGGAAATGGGATATGAAGAG+AGG | + | chr3_1:59249956-59249975 | Msa0365300:CDS | 40.0% | |
| AATAAGGCAGCAACCATAAG+AGG | - | chr3_1:59249985-59250004 | None:intergenic | 40.0% | |
| ! | CTTATGGTTGCTGCCTTATT+TGG | + | chr3_1:59249985-59250004 | Msa0365300:CDS | 40.0% |
| CTAGTAGTATCTTCGGTTCA+AGG | + | chr3_1:59250220-59250239 | Msa0365300:CDS | 40.0% | |
| GTATCTTCGGTTCAAGGAAT+AGG | + | chr3_1:59250226-59250245 | Msa0365300:CDS | 40.0% | |
| TCATCTACGCCTTCTAGTAT+GGG | - | chr3_1:59250261-59250280 | None:intergenic | 40.0% | |
| ATCATCTACGCCTTCTAGTA+TGG | - | chr3_1:59250262-59250281 | None:intergenic | 40.0% | |
| TTGTTTATGTCAGGTAGGGA+TGG | - | chr3_1:59250387-59250406 | None:intergenic | 40.0% | |
| !! | TCAAAGTGAAGCCTTGTTCA+AGG | + | chr3_1:59250445-59250464 | Msa0365300:CDS | 40.0% |
| !! | CAAAGTGAAGCCTTGTTCAA+GGG | + | chr3_1:59250446-59250465 | Msa0365300:CDS | 40.0% |
| TGAGAATAAGCCCTTGAACA+AGG | - | chr3_1:59250459-59250478 | None:intergenic | 40.0% | |
| CAAGGGCTTATTCTCATGAT+TGG | + | chr3_1:59250463-59250482 | Msa0365300:CDS | 40.0% | |
| GATGCTTGTGAATATGCACA+TGG | + | chr3_1:59250600-59250619 | Msa0365300:CDS | 40.0% | |
| !! | AGCCTTGTTCTATATTGAGC+AGG | - | chr3_1:59250648-59250667 | None:intergenic | 40.0% |
| AGCAAAAAAGCAAACCCTTC+TGG | - | chr3_1:59250694-59250713 | None:intergenic | 40.0% | |
| TTCACCTAGTGCTTCTTCAA+TGG | + | chr3_1:59250788-59250807 | Msa0365300:CDS | 40.0% | |
| !! | GAATCCATTGAAGAAGCACT+AGG | - | chr3_1:59250795-59250814 | None:intergenic | 40.0% |
| TTGAAAACTGCACTGAATGC+TGG | + | chr3_1:59250960-59250979 | Msa0365300:CDS | 40.0% | |
| GTCTTTCATCCCCTTCAAAT+AGG | + | chr3_1:59251021-59251040 | Msa0365300:CDS | 40.0% | |
| TCTTGCAAGCCTATTTGAAG+GGG | - | chr3_1:59251033-59251052 | None:intergenic | 40.0% | |
| CTCTTGCAAGCCTATTTGAA+GGG | - | chr3_1:59251034-59251053 | None:intergenic | 40.0% | |
| ACTCTTGCAAGCCTATTTGA+AGG | - | chr3_1:59251035-59251054 | None:intergenic | 40.0% | |
| ! | AAGGCATCTACTCTGAATTG+TGG | - | chr3_1:59251191-59251210 | None:intergenic | 40.0% |
| TACTGCGCTCAATAAAGCTT+TGG | - | chr3_1:59251226-59251245 | None:intergenic | 40.0% | |
| AGAAAACGTAGAATGGTCCA+TGG | - | chr3_1:59251294-59251313 | None:intergenic | 40.0% | |
| ! | ATGGACCATTCTACGTTTTC+TGG | + | chr3_1:59251293-59251312 | Msa0365300:CDS | 40.0% |
| !! | ACCATTCTACGTTTTCTGGT+TGG | + | chr3_1:59251297-59251316 | Msa0365300:CDS | 40.0% |
| !!! | CCATTCTACGTTTTCTGGTT+GGG | + | chr3_1:59251298-59251317 | Msa0365300:CDS | 40.0% |
| !!! | CATTCTACGTTTTCTGGTTG+GGG | + | chr3_1:59251299-59251318 | Msa0365300:CDS | 40.0% |
| ! | GACCAGTCTAATTTTCCATC+AGG | - | chr3_1:59251329-59251348 | None:intergenic | 40.0% |
| AAAATACATCTGGATCGTCG+AGG | - | chr3_1:59251445-59251464 | None:intergenic | 40.0% | |
| ! | TTTGCCAGAGCATTTGTACA+TGG | + | chr3_1:59251577-59251596 | Msa0365300:CDS | 40.0% |
| TTCAGCCGAAGATGACGTAA+TGG | + | chr3_1:59249855-59249874 | Msa0365300:CDS | 45.0% | |
| GAACATGAAGTCGATGAGGT+AGG | + | chr3_1:59249904-59249923 | Msa0365300:CDS | 45.0% | |
| TTATGGTATGGAAGGAGGGT+TGG | + | chr3_1:59249928-59249947 | Msa0365300:CDS | 45.0% | |
| AGGGTTGGATCGAAGGAAAT+GGG | + | chr3_1:59249943-59249962 | Msa0365300:CDS | 45.0% | |
| TGAAGAGAGGACACCTCTTA+TGG | + | chr3_1:59249969-59249988 | Msa0365300:CDS | 45.0% | |
| !! | TGCTGCCTTATTTGGAAGCA+AGG | + | chr3_1:59249993-59250012 | Msa0365300:CDS | 45.0% |
| !! | GCTGCCTTATTTGGAAGCAA+GGG | + | chr3_1:59249994-59250013 | Msa0365300:CDS | 45.0% |
| CACACCCTTGCTTCCAAATA+AGG | - | chr3_1:59250001-59250020 | None:intergenic | 45.0% | |
| GTTGATGTTAACCGAGAGTG+CGG | + | chr3_1:59250048-59250067 | Msa0365300:CDS | 45.0% | |
| AGAAACAGCACAACGAAGAG+CGG | - | chr3_1:59250088-59250107 | None:intergenic | 45.0% | |
| ! | GTGCAACGACTTGTTTGTCT+CGG | + | chr3_1:59250194-59250213 | Msa0365300:CDS | 45.0% |
| TCAGGTAGGGATGGATCAAT+CGG | - | chr3_1:59250378-59250397 | None:intergenic | 45.0% | |
| ATGATCCTTTCCGAAACTCG+GGG | - | chr3_1:59250569-59250588 | None:intergenic | 45.0% | |
| CATGATCCTTTCCGAAACTC+GGG | - | chr3_1:59250570-59250589 | None:intergenic | 45.0% | |
| GCATGATCCTTTCCGAAACT+CGG | - | chr3_1:59250571-59250590 | None:intergenic | 45.0% | |
| AGAACAAGGCTTTGCAAGGA+TGG | + | chr3_1:59250657-59250676 | Msa0365300:CDS | 45.0% | |
| ! | GAACCGGTAGAAGCATACAA+CGG | - | chr3_1:59250738-59250757 | None:intergenic | 45.0% |
| GCAGGTTGTATCGAAGAAGA+CGG | - | chr3_1:59250834-59250853 | None:intergenic | 45.0% | |
| ! | TCTGTTTCTCGGCATCTGAA+GGG | - | chr3_1:59250940-59250959 | None:intergenic | 45.0% |
| ! | ATCTGTTTCTCGGCATCTGA+AGG | - | chr3_1:59250941-59250960 | None:intergenic | 45.0% |
| TTGAAGGGGATGAAAGACTG+AGG | - | chr3_1:59251019-59251038 | None:intergenic | 45.0% | |
| TGATGCATCTGCATTGTGGT+CGG | - | chr3_1:59251104-59251123 | None:intergenic | 45.0% | |
| GTTCTGATGCATCTGCATTG+TGG | - | chr3_1:59251108-59251127 | None:intergenic | 45.0% | |
| AGAACGCAAACCAGCAACTT+TGG | + | chr3_1:59251123-59251142 | Msa0365300:CDS | 45.0% | |
| GAACGCAAACCAGCAACTTT+GGG | + | chr3_1:59251124-59251143 | Msa0365300:CDS | 45.0% | |
| AACGCAAACCAGCAACTTTG+GGG | + | chr3_1:59251125-59251144 | Msa0365300:CDS | 45.0% | |
| AATGATAGCCCCAAAGTTGC+TGG | - | chr3_1:59251136-59251155 | None:intergenic | 45.0% | |
| !! | GCTTTGGCTTTGCTTTGAGA+AGG | - | chr3_1:59251210-59251229 | None:intergenic | 45.0% |
| CTTTATTGAGCGCAGTAGCA+TGG | + | chr3_1:59251229-59251248 | Msa0365300:CDS | 45.0% | |
| CCCAACCAGAAAACGTAGAA+TGG | - | chr3_1:59251301-59251320 | None:intergenic | 45.0% | |
| CGCCTGATGGAAAATTAGAC+TGG | + | chr3_1:59251324-59251343 | Msa0365300:CDS | 45.0% | |
| ! | AAATTAGACTGGTCCATCCG+CGG | + | chr3_1:59251335-59251354 | Msa0365300:CDS | 45.0% |
| TGTGAAGGATGCTCCAACAA+TGG | + | chr3_1:59251493-59251512 | Msa0365300:CDS | 45.0% | |
| TGCTCCATGTACAAATGCTC+TGG | - | chr3_1:59251584-59251603 | None:intergenic | 45.0% | |
| TTCAGCCGAAGATGACGTAA+TGG | + | chr3_1:59249855-59249874 | Msa0365300:CDS | 45.0% | |
| GAACATGAAGTCGATGAGGT+AGG | + | chr3_1:59249904-59249923 | Msa0365300:CDS | 45.0% | |
| TTATGGTATGGAAGGAGGGT+TGG | + | chr3_1:59249928-59249947 | Msa0365300:CDS | 45.0% | |
| AGGGTTGGATCGAAGGAAAT+GGG | + | chr3_1:59249943-59249962 | Msa0365300:CDS | 45.0% | |
| TGAAGAGAGGACACCTCTTA+TGG | + | chr3_1:59249969-59249988 | Msa0365300:CDS | 45.0% | |
| !! | TGCTGCCTTATTTGGAAGCA+AGG | + | chr3_1:59249993-59250012 | Msa0365300:CDS | 45.0% |
| !! | GCTGCCTTATTTGGAAGCAA+GGG | + | chr3_1:59249994-59250013 | Msa0365300:CDS | 45.0% |
| CACACCCTTGCTTCCAAATA+AGG | - | chr3_1:59250001-59250020 | None:intergenic | 45.0% | |
| GTTGATGTTAACCGAGAGTG+CGG | + | chr3_1:59250048-59250067 | Msa0365300:CDS | 45.0% | |
| AGAAACAGCACAACGAAGAG+CGG | - | chr3_1:59250088-59250107 | None:intergenic | 45.0% | |
| ! | GTGCAACGACTTGTTTGTCT+CGG | + | chr3_1:59250194-59250213 | Msa0365300:CDS | 45.0% |
| TCAGGTAGGGATGGATCAAT+CGG | - | chr3_1:59250378-59250397 | None:intergenic | 45.0% | |
| ATGATCCTTTCCGAAACTCG+GGG | - | chr3_1:59250569-59250588 | None:intergenic | 45.0% | |
| CATGATCCTTTCCGAAACTC+GGG | - | chr3_1:59250570-59250589 | None:intergenic | 45.0% | |
| GCATGATCCTTTCCGAAACT+CGG | - | chr3_1:59250571-59250590 | None:intergenic | 45.0% | |
| AGAACAAGGCTTTGCAAGGA+TGG | + | chr3_1:59250657-59250676 | Msa0365300:CDS | 45.0% | |
| ! | GAACCGGTAGAAGCATACAA+CGG | - | chr3_1:59250738-59250757 | None:intergenic | 45.0% |
| GCAGGTTGTATCGAAGAAGA+CGG | - | chr3_1:59250834-59250853 | None:intergenic | 45.0% | |
| ! | TCTGTTTCTCGGCATCTGAA+GGG | - | chr3_1:59250940-59250959 | None:intergenic | 45.0% |
| ! | ATCTGTTTCTCGGCATCTGA+AGG | - | chr3_1:59250941-59250960 | None:intergenic | 45.0% |
| TTGAAGGGGATGAAAGACTG+AGG | - | chr3_1:59251019-59251038 | None:intergenic | 45.0% | |
| TGATGCATCTGCATTGTGGT+CGG | - | chr3_1:59251104-59251123 | None:intergenic | 45.0% | |
| GTTCTGATGCATCTGCATTG+TGG | - | chr3_1:59251108-59251127 | None:intergenic | 45.0% | |
| AGAACGCAAACCAGCAACTT+TGG | + | chr3_1:59251123-59251142 | Msa0365300:CDS | 45.0% | |
| GAACGCAAACCAGCAACTTT+GGG | + | chr3_1:59251124-59251143 | Msa0365300:CDS | 45.0% | |
| AACGCAAACCAGCAACTTTG+GGG | + | chr3_1:59251125-59251144 | Msa0365300:CDS | 45.0% | |
| AATGATAGCCCCAAAGTTGC+TGG | - | chr3_1:59251136-59251155 | None:intergenic | 45.0% | |
| !! | GCTTTGGCTTTGCTTTGAGA+AGG | - | chr3_1:59251210-59251229 | None:intergenic | 45.0% |
| CTTTATTGAGCGCAGTAGCA+TGG | + | chr3_1:59251229-59251248 | Msa0365300:CDS | 45.0% | |
| CCCAACCAGAAAACGTAGAA+TGG | - | chr3_1:59251301-59251320 | None:intergenic | 45.0% | |
| CGCCTGATGGAAAATTAGAC+TGG | + | chr3_1:59251324-59251343 | Msa0365300:CDS | 45.0% | |
| ! | AAATTAGACTGGTCCATCCG+CGG | + | chr3_1:59251335-59251354 | Msa0365300:CDS | 45.0% |
| TGTGAAGGATGCTCCAACAA+TGG | + | chr3_1:59251493-59251512 | Msa0365300:CDS | 45.0% | |
| TGCTCCATGTACAAATGCTC+TGG | - | chr3_1:59251584-59251603 | None:intergenic | 45.0% | |
| AGGCGAACATGAAGTCGATG+AGG | + | chr3_1:59249900-59249919 | Msa0365300:CDS | 50.0% | |
| GAGGGTTGGATCGAAGGAAA+TGG | + | chr3_1:59249942-59249961 | Msa0365300:CDS | 50.0% | |
| TCGGTTAACATCAACGCGAC+TGG | - | chr3_1:59250043-59250062 | None:intergenic | 50.0% | |
| !! | GCTCTTCGTTGTGCTGTTTC+TGG | + | chr3_1:59250087-59250106 | Msa0365300:CDS | 50.0% |
| CGGGTGAACAAATGGACACT+CGG | - | chr3_1:59250490-59250509 | None:intergenic | 50.0% | |
| CGAGTGTCCATTTGTTCACC+CGG | + | chr3_1:59250488-59250507 | Msa0365300:CDS | 50.0% | |
| GAGTGTCCATTTGTTCACCC+GGG | + | chr3_1:59250489-59250508 | Msa0365300:CDS | 50.0% | |
| AGTGTCCATTTGTTCACCCG+GGG | + | chr3_1:59250490-59250509 | Msa0365300:CDS | 50.0% | |
| ! | TTTTCCCCCGGGTGAACAAA+TGG | - | chr3_1:59250498-59250517 | None:intergenic | 50.0% |
| CGGAAAGGATCATGCAGCAA+AGG | + | chr3_1:59250576-59250595 | Msa0365300:CDS | 50.0% | |
| AGGCTTTGCAAGGATGGAAC+CGG | + | chr3_1:59250663-59250682 | Msa0365300:CDS | 50.0% | |
| CGACCGTTGTATGCTTCTAC+CGG | + | chr3_1:59250732-59250751 | Msa0365300:CDS | 50.0% | |
| AGGTGAAGGCAAAGCAGAAC+CGG | - | chr3_1:59250754-59250773 | None:intergenic | 50.0% | |
| GGTGAAGATGGAGTCAAAGG+TGG | - | chr3_1:59250864-59250883 | None:intergenic | 50.0% | |
| GCAGGTGAAGATGGAGTCAA+AGG | - | chr3_1:59250867-59250886 | None:intergenic | 50.0% | |
| ACTCCATCTTCACCTGCTAC+TGG | + | chr3_1:59250870-59250889 | Msa0365300:CDS | 50.0% | |
| GTTCCAGTAGCAGGTGAAGA+TGG | - | chr3_1:59250876-59250895 | None:intergenic | 50.0% | |
| CTGAATCTGAGTCTGCCACA+TGG | - | chr3_1:59250898-59250917 | None:intergenic | 50.0% | |
| TTCTCGGCATCTGAAGGGTT+GGG | - | chr3_1:59250935-59250954 | None:intergenic | 50.0% | |
| TTTCTCGGCATCTGAAGGGT+TGG | - | chr3_1:59250936-59250955 | None:intergenic | 50.0% | |
| ATGGCAACTGAGGTAGCAGA+AGG | - | chr3_1:59251275-59251294 | None:intergenic | 50.0% | |
| TTCTGCTACCTCAGTTGCCA+TGG | + | chr3_1:59251274-59251293 | Msa0365300:CDS | 50.0% | |
| AGAATGGTCCATGGCAACTG+AGG | - | chr3_1:59251285-59251304 | None:intergenic | 50.0% | |
| ATTGAGTTCATTGCCGCGGA+TGG | - | chr3_1:59251351-59251370 | None:intergenic | 50.0% | |
| AGGCGAACATGAAGTCGATG+AGG | + | chr3_1:59249900-59249919 | Msa0365300:CDS | 50.0% | |
| GAGGGTTGGATCGAAGGAAA+TGG | + | chr3_1:59249942-59249961 | Msa0365300:CDS | 50.0% | |
| TCGGTTAACATCAACGCGAC+TGG | - | chr3_1:59250043-59250062 | None:intergenic | 50.0% | |
| !! | GCTCTTCGTTGTGCTGTTTC+TGG | + | chr3_1:59250087-59250106 | Msa0365300:CDS | 50.0% |
| CGGGTGAACAAATGGACACT+CGG | - | chr3_1:59250490-59250509 | None:intergenic | 50.0% | |
| CGAGTGTCCATTTGTTCACC+CGG | + | chr3_1:59250488-59250507 | Msa0365300:CDS | 50.0% | |
| GAGTGTCCATTTGTTCACCC+GGG | + | chr3_1:59250489-59250508 | Msa0365300:CDS | 50.0% | |
| AGTGTCCATTTGTTCACCCG+GGG | + | chr3_1:59250490-59250509 | Msa0365300:CDS | 50.0% | |
| ! | TTTTCCCCCGGGTGAACAAA+TGG | - | chr3_1:59250498-59250517 | None:intergenic | 50.0% |
| CGGAAAGGATCATGCAGCAA+AGG | + | chr3_1:59250576-59250595 | Msa0365300:CDS | 50.0% | |
| AGGCTTTGCAAGGATGGAAC+CGG | + | chr3_1:59250663-59250682 | Msa0365300:CDS | 50.0% | |
| CGACCGTTGTATGCTTCTAC+CGG | + | chr3_1:59250732-59250751 | Msa0365300:CDS | 50.0% | |
| AGGTGAAGGCAAAGCAGAAC+CGG | - | chr3_1:59250754-59250773 | None:intergenic | 50.0% | |
| GGTGAAGATGGAGTCAAAGG+TGG | - | chr3_1:59250864-59250883 | None:intergenic | 50.0% | |
| GCAGGTGAAGATGGAGTCAA+AGG | - | chr3_1:59250867-59250886 | None:intergenic | 50.0% | |
| ACTCCATCTTCACCTGCTAC+TGG | + | chr3_1:59250870-59250889 | Msa0365300:CDS | 50.0% | |
| GTTCCAGTAGCAGGTGAAGA+TGG | - | chr3_1:59250876-59250895 | None:intergenic | 50.0% | |
| CTGAATCTGAGTCTGCCACA+TGG | - | chr3_1:59250898-59250917 | None:intergenic | 50.0% | |
| TTCTCGGCATCTGAAGGGTT+GGG | - | chr3_1:59250935-59250954 | None:intergenic | 50.0% | |
| TTTCTCGGCATCTGAAGGGT+TGG | - | chr3_1:59250936-59250955 | None:intergenic | 50.0% | |
| ATGGCAACTGAGGTAGCAGA+AGG | - | chr3_1:59251275-59251294 | None:intergenic | 50.0% | |
| TTCTGCTACCTCAGTTGCCA+TGG | + | chr3_1:59251274-59251293 | Msa0365300:CDS | 50.0% | |
| AGAATGGTCCATGGCAACTG+AGG | - | chr3_1:59251285-59251304 | None:intergenic | 50.0% | |
| ATTGAGTTCATTGCCGCGGA+TGG | - | chr3_1:59251351-59251370 | None:intergenic | 50.0% | |
| TGGAAGGAGGGTTGGATCGA+AGG | + | chr3_1:59249936-59249955 | Msa0365300:CDS | 55.0% | |
| GTGGAGCAGCAACACGATGT+AGG | + | chr3_1:59250324-59250343 | Msa0365300:CDS | 55.0% | |
| GTGTCCATTTGTTCACCCGG+GGG | + | chr3_1:59250491-59250510 | Msa0365300:CDS | 55.0% | |
| CTTTCCGAAACTCGGGGCAA+GGG | - | chr3_1:59250563-59250582 | None:intergenic | 55.0% | |
| ATGGAACCGGATGCACCAGA+AGG | + | chr3_1:59250676-59250695 | Msa0365300:CDS | 55.0% | |
| TGGAACCGGATGCACCAGAA+GGG | + | chr3_1:59250677-59250696 | Msa0365300:CDS | 55.0% | |
| GCAAACCCTTCTGGTGCATC+CGG | - | chr3_1:59250685-59250704 | None:intergenic | 55.0% | |
| GATGGAGTCAAAGGTGGCGT+TGG | - | chr3_1:59250858-59250877 | None:intergenic | 55.0% | |
| CACCTGCTACTGGAACCATG+TGG | + | chr3_1:59250880-59250899 | Msa0365300:CDS | 55.0% | |
| TGCCACATGGTTCCAGTAGC+AGG | - | chr3_1:59250885-59250904 | None:intergenic | 55.0% | |
| ACAGAACCGCGTCGGGATTA+TGG | - | chr3_1:59251556-59251575 | None:intergenic | 55.0% | |
| TGGCAAAGACAGAACCGCGT+CGG | - | chr3_1:59251564-59251583 | None:intergenic | 55.0% | |
| TGGAAGGAGGGTTGGATCGA+AGG | + | chr3_1:59249936-59249955 | Msa0365300:CDS | 55.0% | |
| GTGGAGCAGCAACACGATGT+AGG | + | chr3_1:59250324-59250343 | Msa0365300:CDS | 55.0% | |
| GTGTCCATTTGTTCACCCGG+GGG | + | chr3_1:59250491-59250510 | Msa0365300:CDS | 55.0% | |
| CTTTCCGAAACTCGGGGCAA+GGG | - | chr3_1:59250563-59250582 | None:intergenic | 55.0% | |
| ATGGAACCGGATGCACCAGA+AGG | + | chr3_1:59250676-59250695 | Msa0365300:CDS | 55.0% | |
| TGGAACCGGATGCACCAGAA+GGG | + | chr3_1:59250677-59250696 | Msa0365300:CDS | 55.0% | |
| GCAAACCCTTCTGGTGCATC+CGG | - | chr3_1:59250685-59250704 | None:intergenic | 55.0% | |
| GATGGAGTCAAAGGTGGCGT+TGG | - | chr3_1:59250858-59250877 | None:intergenic | 55.0% | |
| CACCTGCTACTGGAACCATG+TGG | + | chr3_1:59250880-59250899 | Msa0365300:CDS | 55.0% | |
| TGCCACATGGTTCCAGTAGC+AGG | - | chr3_1:59250885-59250904 | None:intergenic | 55.0% | |
| ACAGAACCGCGTCGGGATTA+TGG | - | chr3_1:59251556-59251575 | None:intergenic | 55.0% | |
| TGGCAAAGACAGAACCGCGT+CGG | - | chr3_1:59251564-59251583 | None:intergenic | 55.0% | |
| ! | ACCGAGAGTGCGGCTCAGAT+AGG | + | chr3_1:59250058-59250077 | Msa0365300:CDS | 60.0% |
| CCCTATCTGAGCCGCACTCT+CGG | - | chr3_1:59250062-59250081 | None:intergenic | 60.0% | |
| ! | CCGAGAGTGCGGCTCAGATA+GGG | + | chr3_1:59250059-59250078 | Msa0365300:CDS | 60.0% |
| TTCACCCGGGGGAAAACGCA+AGG | + | chr3_1:59250502-59250521 | Msa0365300:CDS | 60.0% | |
| AAACTCGGGGCAAGGGACAC+AGG | - | chr3_1:59250556-59250575 | None:intergenic | 60.0% | |
| GTGTCCCTTGCCCCGAGTTT+CGG | + | chr3_1:59250556-59250575 | Msa0365300:CDS | 60.0% | |
| CCTTTCCGAAACTCGGGGCA+AGG | - | chr3_1:59250564-59250583 | None:intergenic | 60.0% | |
| CCTTGCCCCGAGTTTCGGAA+AGG | + | chr3_1:59250561-59250580 | Msa0365300:CDS | 60.0% | |
| !! | GTCAAAGGTGGCGTTGGTGC+AGG | - | chr3_1:59250852-59250871 | None:intergenic | 60.0% |
| GCAGTGCCATAATCCCGACG+CGG | + | chr3_1:59251547-59251566 | Msa0365300:CDS | 60.0% | |
| GGCAAAGACAGAACCGCGTC+GGG | - | chr3_1:59251563-59251582 | None:intergenic | 60.0% | |
| ! | ACCGAGAGTGCGGCTCAGAT+AGG | + | chr3_1:59250058-59250077 | Msa0365300:CDS | 60.0% |
| CCCTATCTGAGCCGCACTCT+CGG | - | chr3_1:59250062-59250081 | None:intergenic | 60.0% | |
| ! | CCGAGAGTGCGGCTCAGATA+GGG | + | chr3_1:59250059-59250078 | Msa0365300:CDS | 60.0% |
| TTCACCCGGGGGAAAACGCA+AGG | + | chr3_1:59250502-59250521 | Msa0365300:CDS | 60.0% | |
| AAACTCGGGGCAAGGGACAC+AGG | - | chr3_1:59250556-59250575 | None:intergenic | 60.0% | |
| GTGTCCCTTGCCCCGAGTTT+CGG | + | chr3_1:59250556-59250575 | Msa0365300:CDS | 60.0% | |
| CCTTTCCGAAACTCGGGGCA+AGG | - | chr3_1:59250564-59250583 | None:intergenic | 60.0% | |
| CCTTGCCCCGAGTTTCGGAA+AGG | + | chr3_1:59250561-59250580 | Msa0365300:CDS | 60.0% | |
| !! | GTCAAAGGTGGCGTTGGTGC+AGG | - | chr3_1:59250852-59250871 | None:intergenic | 60.0% |
| GCAGTGCCATAATCCCGACG+CGG | + | chr3_1:59251547-59251566 | Msa0365300:CDS | 60.0% | |
| GGCAAAGACAGAACCGCGTC+GGG | - | chr3_1:59251563-59251582 | None:intergenic | 60.0% | |
| !! | ACGCAAGGCGCCGTGATCCA+AGG | + | chr3_1:59250517-59250536 | Msa0365300:CDS | 65.0% |
| TCTGGTTGGGGCTCGCCTGA+TGG | + | chr3_1:59251311-59251330 | Msa0365300:CDS | 65.0% | |
| !! | ACGCAAGGCGCCGTGATCCA+AGG | + | chr3_1:59250517-59250536 | Msa0365300:CDS | 65.0% |
| TCTGGTTGGGGCTCGCCTGA+TGG | + | chr3_1:59251311-59251330 | Msa0365300:CDS | 65.0% | |
| ! | GGCGCCTTGCGTTTTCCCCC+GGG | - | chr3_1:59250509-59250528 | None:intergenic | 70.0% |
| ! | CGGCGCCTTGCGTTTTCCCC+CGG | - | chr3_1:59250510-59250529 | None:intergenic | 70.0% |
| ! | GGCGCCTTGCGTTTTCCCCC+GGG | - | chr3_1:59250509-59250528 | None:intergenic | 70.0% |
| ! | CGGCGCCTTGCGTTTTCCCC+CGG | - | chr3_1:59250510-59250529 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 59249748 | 59251607 | 59249748 | ID=Msa0365300;Name=Msa0365300 |
| chr3_1 | mRNA | 59249748 | 59251607 | 59249748 | ID=Msa0365300-mRNA-1;Parent=Msa0365300;Name=Msa0365300-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|-1|0|1|-1|1|1|0|619 |
| chr3_1 | exon | 59249748 | 59251607 | 59249748 | ID=Msa0365300-mRNA-1:exon:11318;Parent=Msa0365300-mRNA-1 |
| chr3_1 | CDS | 59249748 | 59251607 | 59249748 | ID=Msa0365300-mRNA-1:cds;Parent=Msa0365300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
