AlfalfaGEDB | Msa0365610

M. sativa cultivar zhongmu-4 / Msa0365610

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0365610	XP_013460350.1	97.797	590	11	1	1	590	1	588	0.0	1201

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0365610	sp\|O22558\|STY8_ARATH	33.818	275	167	6	315	582	269	535	2.17e-48	180

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0365610	A0A072UYA6	97.797	590	11	1	1	590	1	588	0.0	1201

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0365610	MtrunA17_Chr3g0105891	97.797	590	11	1	1	590	1	588	0.0	1201
Msa0365610	MtrunA17_Chr5g0431191	69.103	602	163	8	1	590	1	591	0.0	814
Msa0365610	MtrunA17_Chr3g0143531	37.705	244	141	6	343	583	40	275	1.61e-49	173
Msa0365610	MtrunA17_Chr1g0211611	34.221	263	162	5	325	582	294	550	8.23e-49	179
Msa0365610	MtrunA17_Chr5g0406251	31.507	292	181	6	304	582	259	544	3.40e-47	174
Msa0365610	MtrunA17_Chr1g0202101	34.363	259	158	6	325	578	276	527	9.11e-46	169
Msa0365610	MtrunA17_Chr3g0090261	31.058	293	186	6	300	582	50	336	3.46e-44	161
Msa0365610	MtrunA17_Chr4g0059121	31.452	248	154	7	343	582	73	312	4.71e-38	144
Msa0365610	MtrunA17_Chr4g0075541	29.655	290	177	9	309	584	67	343	9.25e-38	144
Msa0365610	MtrunA17_Chr3g0117731	30.233	258	164	7	333	582	62	311	1.18e-37	142

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0365610	AT5G58520.1	61.779	607	202	6	1	584	1	600	0.0	732
Msa0365610	AT5G07140.1	62.393	585	213	4	1	584	1	579	0.0	692
Msa0365610	AT2G17700.1	33.818	275	167	6	315	582	269	535	2.20e-49	180
Msa0365610	AT4G35780.1	33.813	278	163	9	315	582	275	541	8.57e-48	176
Msa0365610	AT4G38470.2	34.221	263	162	5	325	582	283	539	2.30e-47	174
Msa0365610	AT4G38470.1	32.667	300	174	7	288	582	263	539	2.90e-47	174
Msa0365610	AT4G31170.7	34.118	255	156	5	334	582	137	385	4.21e-42	157
Msa0365610	AT4G31170.6	34.118	255	156	5	334	582	137	385	4.21e-42	157
Msa0365610	AT4G31170.5	34.118	255	156	5	334	582	137	385	4.21e-42	157
Msa0365610	AT4G31170.1	34.118	255	156	5	334	582	137	385	4.21e-42	157

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Find 157 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAAGCTTCACACCAC+CGG	0.589359	3_1:+59824528	None:intergenic
AAACACGGGAGCGCTTGCTT+GGG	0.503506	3_1:-59823899	Msa0365610:CDS
AAATCTGAAGTCACAAGTGA+AGG	0.572941	3_1:+59825944	None:intergenic
AACATTACTCATCCATGTCT+CGG	0.559322	3_1:+59822654	None:intergenic
AACTGATGGTTACCGGTGGC+TGG	0.490081	3_1:-59823822	Msa0365610:CDS
AAGAAGAAGGTGGTGGTGGT+TGG	0.501244	3_1:+59825850	None:intergenic
AAGATCAATGGCTTCAGCAT+TGG	0.451927	3_1:-59825766	Msa0365610:exon
AAGATGGGTTTGTTTCCATT+AGG	0.415945	3_1:+59825682	None:intergenic
AAGCTCAGAGGGTGTGACAA+AGG	0.559964	3_1:-59824208	Msa0365610:CDS
AAGGTGGTGGTGGTTGGTTA+TGG	0.391081	3_1:+59825856	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTCTCACTTTCAAGATCAA+TGG	-	chr3_1:59822369-59822388	Msa0365610:three_prime_UTR	30.0%
ATAATCACATTGACATTCAC+TGG	+	chr3_1:59823031-59823050	None:intergenic	30.0%
CACATCTTTAACATCAAATC+CGG	+	chr3_1:59823277-59823296	None:intergenic	30.0%
GATACATGAAAAGACGAATT+CGG	+	chr3_1:59823777-59823796	None:intergenic	30.0%
ACTAACAAAAGACACACTTA+GGG	+	chr3_1:59824745-59824764	None:intergenic	30.0%
TACTAACAAAAGACACACTT+AGG	+	chr3_1:59824746-59824765	None:intergenic	30.0%
TTATGGACCAAATCGATTAA+CGG	-	chr3_1:59824769-59824788	Msa0365610:CDS	30.0%
ATATGTTTGTGTAGCCATAA+TGG	-	chr3_1:59825024-59825043	Msa0365610:intron	30.0%
TTTAGTAGTGTTTGCCATTA+TGG	+	chr3_1:59825041-59825060	None:intergenic	30.0%
ATAAAGCTTCCTTTAAGTGT+AGG	+	chr3_1:59825162-59825181	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	59822193	59825976	59822193	ID=Msa0365610;Name=Msa0365610
chr3_1	mRNA	59822193	59825976	59822193	ID=Msa0365610-mRNA-1;Parent=Msa0365610;Name=Msa0365610-mRNA-1;_AED=0.00;_eAED=0.00;_QI=195\|1\|1\|1\|1\|1\|3\|221\|590
chr3_1	exon	59822193	59822704	59822193	ID=Msa0365610-mRNA-1:exon:11478;Parent=Msa0365610-mRNA-1
chr3_1	exon	59823814	59824906	59823814	ID=Msa0365610-mRNA-1:exon:11477;Parent=Msa0365610-mRNA-1
chr3_1	exon	59825393	59825976	59825393	ID=Msa0365610-mRNA-1:exon:11476;Parent=Msa0365610-mRNA-1
chr3_1	five_prime_UTR	59825782	59825976	59825782	ID=Msa0365610-mRNA-1:five_prime_utr;Parent=Msa0365610-mRNA-1
chr3_1	CDS	59825393	59825781	59825393	ID=Msa0365610-mRNA-1:cds;Parent=Msa0365610-mRNA-1
chr3_1	CDS	59823814	59824906	59823814	ID=Msa0365610-mRNA-1:cds;Parent=Msa0365610-mRNA-1
chr3_1	CDS	59822414	59822704	59822414	ID=Msa0365610-mRNA-1:cds;Parent=Msa0365610-mRNA-1
chr3_1	three_prime_UTR	59822193	59822413	59822193	ID=Msa0365610-mRNA-1:three_prime_utr;Parent=Msa0365610-mRNA-1

Gene Sequence

>Msa0365610

ATGGCTTCAGCATTGGAATGTTGGTCTCGACGCAACAACAACAACAACGAAGAAGAAGACATGGTAGAACAACAAGTCCTAATGGAAACAAACCCATCTTCACAACCCAACAACAACAACAACAACAACAAAGAATCTTCCATCATTCACAAGAAGTTCAACAAACTCACACGCAATGTTTCTGAAGCCATTGCTTCTCTCAAAAACACACTCAACATTAACCTCGATTCTTCCAAACACGACAACAACAACAACAACACTTGTCGGAGTAGCAACAACCTTGTTTGGGGAACTGTTGTGAGAAATCTCACTCAGCTTTATCCTGGTAGCCAGCTTCCTGAGAAGCTTATGTCCAACATTCGTAAGCACTATGATTCATTGCCTCCTAGTTATTCTCAGGCCGGATTTGATGTTAAAGATGTGTTTATTCACATCAAGCTGATTGAGCAAGCTTTGGAAGATGGGCAAGCGGCGATTTTGATTGAAGAAGAGTGTGACGGTGATATGCAGCTTCAAGGATCTTTGTTTAAGTTGACATTTGCTTGCAACTCTCCAATTTCATGGCCTGCAATGTCGAGTGCATTGGATAGTTCTTCCATTTGCTGCAAGAAGATTCAGATATTTGAGAAGAAAAGTCTCACCCTTGGAATCGTGCTTCTACTTGTTCTTTCTGGGGCTGGTCAGGATAAGTTGGTAAGGACCAGGGTTGAAAGCGCGCTCAAATTTGCTATGAAGAAGCCTAAAGCCGGTGGTGTGAAGCTTCCTTTTGGGCTCTGTGGATGTCAAGAGGAGAATTTCAAGGGGAGAGAGTTTGGAGAGATTGAAGAAGATGGTAATGGTGTATACTGCGGAAACGGGTTTGAGAATTTGAGCCAAAAGATTCAGCTTGAAATGCCCTTGCCGAATTCGTCTTTTCATGTATCGGTAGATGAGTGGCAGACTATTCAGACAGATGTGGATGAGATACAGAAATGGTTGTTGAGTTCGGATAGTCTCGAATTTTCGGAACAGACTGGACACAATTCGTATAAGGGAACATACATGGGGAAAAGAGTTGGCATTGAGAAGCTCAGAGGGTGTGACAAAGGGAATTCATATGAGTTCATGCTCAGGAAAGATCTGCTAGAATTGATGACATGTGGACATAAAAACATTTTGCCGTTTTGCGGTGTGTGTGTAGATGACAATCATGGTTTATGCGTAGTGACGAAATTCATGGAAGGTGGATCGGTTCATGACTTAATTTCAAAGAACAAGAAGCTTCAGAACAAGGATATTGTAAGAATTGCAGTTGATGTGGCTGAGGGGATCAAGTTTTTGAATGATCATGGTGTTTCATACAGAGACCTTAATACACAGAGGATTCTGTTGGATAAACACGGGAGCGCTTGCTTGGGAGATATCGGCATAGTCACTGCTTGCAAGAGCAACCAAGAGGCAATGGACTATGAAACTGATGGTTACCGGTGGCTGGCTCCTGAGGTAATCTCAGGCGACCCTGAGAGTGTCACCGAGACATGGATGAGTAATGTTTATAGTTTCGGTATGGTAATTTGGGAGATGGTATCCGGTGAAGCAGCCTATACTGCATATTCGCCTGTGCAGGCAGCAGTAGGCATTGCTGCATGTGGCCTTAGACCTGAAATCCCAAAGGACTGTCCACAAACTCTAAAGTCTTTAATGACAAAGTGCTGGAACAACACCCCTTCAAAACGCCCCGATTTCTCCGAAATTTTAGCGATATTGTTGCGACCAAACAACAACAATAGGTAA

Protein sequence

>Msa0365610

MASALECWSRRNNNNNEEEDMVEQQVLMETNPSSQPNNNNNNNKESSIIHKKFNKLTRNVSEAIASLKNTLNINLDSSKHDNNNNNTCRSSNNLVWGTVVRNLTQLYPGSQLPEKLMSNIRKHYDSLPPSYSQAGFDVKDVFIHIKLIEQALEDGQAAILIEEECDGDMQLQGSLFKLTFACNSPISWPAMSSALDSSSICCKKIQIFEKKSLTLGIVLLLVLSGAGQDKLVRTRVESALKFAMKKPKAGGVKLPFGLCGCQEENFKGREFGEIEEDGNGVYCGNGFENLSQKIQLEMPLPNSSFHVSVDEWQTIQTDVDEIQKWLLSSDSLEFSEQTGHNSYKGTYMGKRVGIEKLRGCDKGNSYEFMLRKDLLELMTCGHKNILPFCGVCVDDNHGLCVVTKFMEGGSVHDLISKNKKLQNKDIVRIAVDVAEGIKFLNDHGVSYRDLNTQRILLDKHGSACLGDIGIVTACKSNQEAMDYETDGYRWLAPEVISGDPESVTETWMSNVYSFGMVIWEMVSGEAAYTAYSPVQAAVGIAACGLRPEIPKDCPQTLKSLMTKCWNNTPSKRPDFSEILAILLRPNNNNR*