Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365920 | AES69527.1 | 91.463 | 246 | 19 | 1 | 1 | 246 | 1 | 244 | 3.06e-152 | 433 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365920 | sp|Q9FJK3|AGL80_ARATH | 43.226 | 155 | 87 | 1 | 1 | 155 | 1 | 154 | 7.95e-27 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365920 | G7IWW4 | 91.463 | 246 | 19 | 1 | 1 | 246 | 1 | 244 | 1.46e-152 | 433 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0365920 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365920 | MtrunA17_Chr3g0106421 | 91.284 | 218 | 17 | 1 | 29 | 246 | 1 | 216 | 2.16e-135 | 379 |
| Msa0365920 | MtrunA17_Chr2g0283941 | 41.597 | 238 | 138 | 1 | 1 | 237 | 1 | 238 | 6.40e-58 | 184 |
| Msa0365920 | MtrunA17_Chr3g0107381 | 42.778 | 180 | 92 | 3 | 1 | 176 | 1 | 173 | 1.44e-42 | 144 |
| Msa0365920 | MtrunA17_Chr3g0107461 | 47.134 | 157 | 83 | 0 | 1 | 157 | 1 | 157 | 2.87e-42 | 141 |
| Msa0365920 | MtrunA17_Chr3g0106501 | 48.889 | 135 | 69 | 0 | 29 | 163 | 1 | 135 | 5.60e-39 | 132 |
| Msa0365920 | MtrunA17_Chr4g0014321 | 42.208 | 154 | 89 | 0 | 1 | 154 | 1 | 154 | 1.12e-37 | 132 |
| Msa0365920 | MtrunA17_Chr3g0110131 | 35.897 | 234 | 142 | 3 | 1 | 228 | 1 | 232 | 3.89e-37 | 130 |
| Msa0365920 | MtrunA17_Chr8g0351751 | 38.095 | 168 | 102 | 1 | 1 | 166 | 1 | 168 | 1.08e-33 | 122 |
| Msa0365920 | MtrunA17_Chr4g0013041 | 35.714 | 196 | 117 | 3 | 1 | 189 | 1 | 194 | 3.00e-32 | 117 |
| Msa0365920 | MtrunA17_Chr5g0432691 | 38.312 | 154 | 94 | 1 | 1 | 154 | 1 | 153 | 3.02e-32 | 115 |
| Msa0365920 | MtrunA17_Chr4g0014031 | 42.308 | 156 | 90 | 0 | 1 | 156 | 1 | 156 | 1.01e-31 | 116 |
| Msa0365920 | MtrunA17_Chr3g0105791 | 41.844 | 141 | 82 | 0 | 29 | 169 | 1 | 141 | 2.63e-31 | 112 |
| Msa0365920 | MtrunA17_Chr4g0031421 | 41.007 | 139 | 82 | 0 | 29 | 167 | 1 | 139 | 3.59e-31 | 112 |
| Msa0365920 | MtrunA17_Chr3g0107351 | 36.306 | 157 | 99 | 1 | 3 | 159 | 2 | 157 | 1.77e-29 | 108 |
| Msa0365920 | MtrunA17_Chr4g0014131 | 42.308 | 156 | 90 | 0 | 1 | 156 | 1 | 156 | 4.86e-29 | 109 |
| Msa0365920 | MtrunA17_Chr2g0296861 | 41.509 | 159 | 92 | 1 | 1 | 159 | 1 | 158 | 5.49e-29 | 107 |
| Msa0365920 | MtrunA17_Chr2g0296831 | 46.281 | 121 | 65 | 0 | 1 | 121 | 1 | 121 | 3.97e-28 | 103 |
| Msa0365920 | MtrunA17_Chr3g0107361 | 34.395 | 157 | 102 | 1 | 3 | 159 | 2 | 157 | 2.19e-27 | 103 |
| Msa0365920 | MtrunA17_Chr3g0107331 | 35.849 | 159 | 101 | 1 | 3 | 161 | 2 | 159 | 2.54e-27 | 102 |
| Msa0365920 | MtrunA17_Chr4g0014121 | 39.744 | 156 | 94 | 0 | 1 | 156 | 29 | 184 | 3.34e-26 | 100 |
| Msa0365920 | MtrunA17_Chr3g0107341 | 33.758 | 157 | 103 | 1 | 3 | 159 | 2 | 157 | 8.95e-26 | 99.0 |
| Msa0365920 | MtrunA17_Chr5g0420351 | 33.121 | 157 | 103 | 2 | 1 | 157 | 1 | 155 | 9.60e-25 | 96.3 |
| Msa0365920 | MtrunA17_Chr1g0188681 | 33.951 | 162 | 95 | 4 | 1 | 157 | 1 | 155 | 5.38e-23 | 91.7 |
| Msa0365920 | MtrunA17_Chr1g0188651 | 36.250 | 160 | 92 | 3 | 1 | 157 | 1 | 153 | 5.60e-21 | 86.3 |
| Msa0365920 | MtrunA17_Chr1g0197321 | 31.210 | 157 | 107 | 1 | 1 | 157 | 1 | 156 | 7.68e-21 | 85.9 |
| Msa0365920 | MtrunA17_Chr1g0197461 | 35.443 | 158 | 98 | 3 | 3 | 159 | 2 | 156 | 1.32e-20 | 85.1 |
| Msa0365920 | MtrunA17_Chr1g0197261 | 32.075 | 159 | 102 | 4 | 1 | 157 | 1 | 155 | 1.55e-20 | 85.1 |
| Msa0365920 | MtrunA17_Chr1g0193311 | 34.395 | 157 | 101 | 2 | 1 | 157 | 1 | 155 | 4.80e-20 | 84.0 |
| Msa0365920 | MtrunA17_Chr7g0218151 | 35.032 | 157 | 100 | 2 | 1 | 157 | 1 | 155 | 7.52e-20 | 83.2 |
| Msa0365920 | MtrunA17_Chr1g0188661 | 34.810 | 158 | 99 | 3 | 1 | 157 | 1 | 155 | 1.89e-19 | 82.4 |
| Msa0365920 | MtrunA17_Chr4g0012761 | 34.395 | 157 | 101 | 2 | 1 | 157 | 1 | 155 | 2.56e-19 | 82.0 |
| Msa0365920 | MtrunA17_Chr6g0457851 | 26.728 | 217 | 143 | 5 | 1 | 211 | 11 | 217 | 1.13e-17 | 80.9 |
| Msa0365920 | MtrunA17_Chr4g0008701 | 32.479 | 117 | 79 | 0 | 3 | 119 | 6 | 122 | 2.38e-17 | 80.9 |
| Msa0365920 | MtrunA17_Chr7g0267601 | 29.915 | 117 | 82 | 0 | 3 | 119 | 6 | 122 | 4.47e-16 | 77.0 |
| Msa0365920 | MtrunA17_Chr1g0212151 | 28.302 | 159 | 99 | 4 | 1 | 153 | 1 | 150 | 4.99e-15 | 73.6 |
| Msa0365920 | MtrunA17_Chr3g0128721 | 30.357 | 112 | 75 | 1 | 3 | 114 | 6 | 114 | 1.37e-14 | 72.8 |
| Msa0365920 | MtrunA17_Chr4g0059631 | 23.626 | 182 | 125 | 5 | 1 | 177 | 1 | 173 | 3.13e-12 | 64.7 |
| Msa0365920 | MtrunA17_Chr6g0449851 | 33.981 | 103 | 61 | 3 | 1 | 97 | 1 | 102 | 3.42e-12 | 65.1 |
| Msa0365920 | MtrunA17_Chr8g0351051 | 25.764 | 229 | 148 | 9 | 1 | 226 | 1 | 210 | 1.84e-11 | 62.4 |
| Msa0365920 | MtrunA17_Chr1g0175611 | 52.083 | 48 | 23 | 0 | 1 | 48 | 1 | 48 | 2.75e-11 | 60.5 |
| Msa0365920 | MtrunA17_Chr4g0061691 | 26.705 | 176 | 114 | 4 | 1 | 174 | 1 | 163 | 9.29e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365920 | AT3G05860.2 | 36.126 | 191 | 107 | 4 | 1 | 189 | 1 | 178 | 6.96e-28 | 106 |
| Msa0365920 | AT3G05860.3 | 34.392 | 189 | 116 | 3 | 1 | 187 | 1 | 183 | 7.96e-28 | 107 |
| Msa0365920 | AT5G48670.1 | 43.226 | 155 | 87 | 1 | 1 | 155 | 1 | 154 | 8.08e-28 | 108 |
| Msa0365920 | AT3G05860.1 | 36.126 | 191 | 107 | 4 | 1 | 189 | 1 | 178 | 1.17e-27 | 107 |
| Msa0365920 | AT1G65300.1 | 32.127 | 221 | 137 | 5 | 3 | 211 | 2 | 221 | 5.12e-25 | 100 |
| Msa0365920 | AT1G65330.1 | 42.609 | 115 | 66 | 0 | 3 | 117 | 2 | 116 | 2.33e-23 | 95.9 |
| Msa0365920 | AT5G26650.1 | 32.338 | 201 | 111 | 6 | 4 | 202 | 2 | 179 | 6.27e-22 | 93.6 |
| Msa0365920 | AT5G27960.1 | 28.571 | 196 | 128 | 3 | 4 | 187 | 2 | 197 | 4.99e-21 | 90.5 |
| Msa0365920 | AT2G28700.1 | 34.074 | 135 | 86 | 1 | 1 | 135 | 1 | 132 | 8.14e-19 | 84.3 |
| Msa0365920 | AT5G27810.1 | 43.820 | 89 | 50 | 0 | 29 | 117 | 1 | 89 | 4.40e-18 | 77.8 |
| Msa0365920 | AT5G26630.1 | 33.758 | 157 | 99 | 2 | 1 | 155 | 1 | 154 | 5.25e-18 | 80.1 |
| Msa0365920 | AT1G31640.1 | 35.897 | 117 | 70 | 2 | 3 | 117 | 2 | 115 | 9.84e-17 | 79.3 |
| Msa0365920 | AT5G26580.1 | 26.848 | 257 | 149 | 9 | 1 | 232 | 1 | 243 | 4.49e-16 | 76.6 |
| Msa0365920 | AT1G31630.1 | 33.043 | 115 | 76 | 1 | 3 | 117 | 2 | 115 | 5.93e-16 | 76.3 |
| Msa0365920 | AT1G22590.2 | 33.028 | 109 | 73 | 0 | 1 | 109 | 1 | 109 | 3.89e-15 | 71.2 |
| Msa0365920 | AT5G55690.1 | 29.814 | 161 | 88 | 5 | 1 | 153 | 1 | 144 | 2.64e-14 | 71.2 |
| Msa0365920 | AT5G55690.2 | 29.814 | 161 | 88 | 5 | 1 | 153 | 1 | 144 | 2.64e-14 | 71.2 |
| Msa0365920 | AT5G06500.1 | 27.673 | 159 | 107 | 2 | 1 | 156 | 1 | 154 | 3.78e-14 | 70.1 |
| Msa0365920 | AT2G03060.3 | 31.818 | 132 | 76 | 3 | 1 | 132 | 1 | 118 | 7.01e-13 | 67.8 |
| Msa0365920 | AT2G03060.7 | 31.818 | 132 | 76 | 3 | 1 | 132 | 1 | 118 | 7.01e-13 | 67.8 |
| Msa0365920 | AT2G03060.1 | 31.818 | 132 | 76 | 3 | 1 | 132 | 1 | 118 | 7.01e-13 | 67.8 |
| Msa0365920 | AT2G03060.2 | 31.818 | 132 | 76 | 3 | 1 | 132 | 1 | 118 | 7.97e-13 | 67.8 |
| Msa0365920 | AT2G40210.1 | 28.025 | 157 | 111 | 1 | 1 | 157 | 1 | 155 | 6.38e-11 | 62.0 |
| Msa0365920 | AT5G39750.1 | 23.404 | 235 | 140 | 9 | 24 | 222 | 31 | 261 | 6.96e-11 | 62.0 |
| Msa0365920 | AT1G69540.1 | 38.824 | 85 | 51 | 1 | 1 | 85 | 1 | 84 | 7.74e-11 | 61.6 |
Find 54 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGAGACTAACATGAATTA+TGG | 0.238809 | 3_1:+60243729 | Msa0365920:CDS |
| TGTTGGATCTATATAGCTTT+TGG | 0.260618 | 3_1:+60243361 | Msa0365920:CDS |
| GATTTCGACCCAAATGGATT+TGG | 0.290310 | 3_1:+60243822 | Msa0365920:CDS |
| GCCCATGAGCAGGTTGTAAA+TGG | 0.293188 | 3_1:+60243594 | Msa0365920:CDS |
| TTACAACCTGCTCATGGGCT+TGG | 0.336276 | 3_1:-60243590 | None:intergenic |
| ACCATGGTCAAGCAGAAGTT+TGG | 0.357178 | 3_1:+60243265 | Msa0365920:CDS |
| TAGATTGATCCAAATCCATT+TGG | 0.359545 | 3_1:-60243831 | None:intergenic |
| TGCTTTCTCATACTTCTCTC+TGG | 0.372187 | 3_1:-60243403 | None:intergenic |
| TACAACCTGCTCATGGGCTT+GGG | 0.383623 | 3_1:-60243589 | None:intergenic |
| TATAAAGGATGGAGATTTGT+TGG | 0.386723 | 3_1:+60243626 | Msa0365920:CDS |
| AAATGGAGCTGAAGCTATAA+AGG | 0.393018 | 3_1:+60243611 | Msa0365920:CDS |
| TTCAATAGGTATAATGAAGA+AGG | 0.408359 | 3_1:+60243185 | Msa0365920:intron |
| TAATCAGAGGTTGGATTCAA+TGG | 0.415635 | 3_1:+60243563 | Msa0365920:CDS |
| GAAGTATGAGAAAGCAATGA+TGG | 0.430824 | 3_1:+60243410 | Msa0365920:CDS |
| AGATTGATCCAAATCCATTT+GGG | 0.442780 | 3_1:-60243830 | None:intergenic |
| GAAGTTTGGCCATCCGTGAT+AGG | 0.452317 | 3_1:+60243279 | Msa0365920:CDS |
| CTCCATTTACAACCTGCTCA+TGG | 0.464952 | 3_1:-60243596 | None:intergenic |
| GAGGTATGTGTAATAATCTA+TGG | 0.465342 | 3_1:+60243237 | Msa0365920:CDS |
| AATGAACTGAGCACCCTTTG+TGG | 0.472395 | 3_1:+60243210 | Msa0365920:CDS |
| AAGTGATGAGCAACTACCTA+TGG | 0.489610 | 3_1:+60243758 | Msa0365920:CDS |
| GAAGGAAGTTAATCAGAGGT+TGG | 0.490639 | 3_1:+60243554 | Msa0365920:CDS |
| TCAAAATCAAAATCATCAAA+TGG | 0.490798 | 3_1:-60243795 | None:intergenic |
| TTTAATTGATGACAATATGA+AGG | 0.493575 | 3_1:+60243536 | Msa0365920:CDS |
| ATGAACTGAGCACCCTTTGT+GGG | 0.496648 | 3_1:+60243211 | Msa0365920:CDS |
| TTTGAGCTTCTTTCTGCCCA+TGG | 0.497356 | 3_1:-60241735 | None:intergenic |
| GAGCACCCTTTGTGGGGTAG+AGG | 0.513130 | 3_1:+60243218 | Msa0365920:CDS |
| ACATAATCAATAAGTCGAAA+CGG | 0.519099 | 3_1:+60241765 | Msa0365920:CDS |
| TCCATTTACAACCTGCTCAT+GGG | 0.519104 | 3_1:-60243595 | None:intergenic |
| CCTACTCGTAACTATAATGT+TGG | 0.540983 | 3_1:+60243477 | Msa0365920:CDS |
| AGGAGATACACGGGATAACA+TGG | 0.551769 | 3_1:+60243683 | Msa0365920:CDS |
| ACATACCTCTACCCCACAAA+GGG | 0.555523 | 3_1:-60243223 | None:intergenic |
| GGTAACCCAAGCCCATGAGC+AGG | 0.557566 | 3_1:+60243584 | Msa0365920:CDS |
| GGAGCTGAAGCTATAAAGGA+TGG | 0.563914 | 3_1:+60243615 | Msa0365920:CDS |
| CGCTGAGTGGAGGAGATACA+CGG | 0.569700 | 3_1:+60243673 | Msa0365920:CDS |
| GCCAAACTTCTGCTTGACCA+TGG | 0.570779 | 3_1:-60243266 | None:intergenic |
| TCATGTTAGTCTCATAACCA+TGG | 0.584822 | 3_1:-60243722 | None:intergenic |
| CATGTTAGTCTCATAACCAT+GGG | 0.600840 | 3_1:-60243721 | None:intergenic |
| GCTCAAGTGCCGCTGAGTGG+AGG | 0.602451 | 3_1:+60243663 | Msa0365920:CDS |
| AATCATCAAATGGTGGCATG+AGG | 0.619303 | 3_1:-60243785 | None:intergenic |
| ATTGCTCAAGTGCCGCTGAG+TGG | 0.623375 | 3_1:+60243660 | Msa0365920:CDS |
| CACACGTTCTAGTCCTATCA+CGG | 0.627981 | 3_1:-60243292 | None:intergenic |
| AAATCAAAATCATCAAATGG+TGG | 0.629108 | 3_1:-60243792 | None:intergenic |
| CACATACCTCTACCCCACAA+AGG | 0.629470 | 3_1:-60243224 | None:intergenic |
| TACACGGGATAACATGGATG+AGG | 0.629602 | 3_1:+60243689 | Msa0365920:CDS |
| CGTTCTAGTCCTATCACGGA+TGG | 0.630409 | 3_1:-60243288 | None:intergenic |
| CCAACATTATAGTTACGAGT+AGG | 0.633928 | 3_1:-60243477 | None:intergenic |
| ATAATCTATGGTGAAAACCA+TGG | 0.637538 | 3_1:+60243249 | Msa0365920:CDS |
| AATCAATAAGTCGAAACGGA+TGG | 0.645843 | 3_1:+60241769 | Msa0365920:CDS |
| GGTGGCATGAGGAAGTCCAT+AGG | 0.659527 | 3_1:-60243774 | None:intergenic |
| TGAACTGAGCACCCTTTGTG+GGG | 0.659813 | 3_1:+60243212 | Msa0365920:CDS |
| ATATGAAGGAAGTTAATCAG+AGG | 0.681452 | 3_1:+60243550 | Msa0365920:CDS |
| GATGAGGTTGCTGATACCCA+TGG | 0.682185 | 3_1:+60243705 | Msa0365920:CDS |
| GCTGAGTGGAGGAGATACAC+GGG | 0.698908 | 3_1:+60243674 | Msa0365920:CDS |
| CGTGTATCTCCTCCACTCAG+CGG | 0.724307 | 3_1:-60243672 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTATTTATTTATAA+TGG | - | chr3_1:60242053-60242072 | None:intergenic | 0.0% |
| !!! | AATTTTTTATTTATTTATAA+TGG | - | chr3_1:60242053-60242072 | None:intergenic | 0.0% |
| !!! | ATTGTTTTTATTATACAATT+AGG | + | chr3_1:60242144-60242163 | Msa0365920:intron | 10.0% |
| !!! | TTGTTTTTATTATACAATTA+GGG | + | chr3_1:60242145-60242164 | Msa0365920:intron | 10.0% |
| !!! | TTTTTATCTTCAAAATAATA+GGG | - | chr3_1:60242198-60242217 | None:intergenic | 10.0% |
| !!! | TTTTTTATCTTCAAAATAAT+AGG | - | chr3_1:60242199-60242218 | None:intergenic | 10.0% |
| !!! | TAAATTTTTTTATTTGATTC+GGG | - | chr3_1:60242363-60242382 | None:intergenic | 10.0% |
| !!! | TTATATATTTATTTTGAAAG+AGG | - | chr3_1:60242490-60242509 | None:intergenic | 10.0% |
| !! | CATACAAAATATAATATTAT+TGG | - | chr3_1:60242654-60242673 | None:intergenic | 10.0% |
| !!! | TTATATATATGTTTTTCAAT+AGG | + | chr3_1:60243171-60243190 | Msa0365920:intron | 10.0% |
| !!! | ATTGTTTTTATTATACAATT+AGG | + | chr3_1:60242144-60242163 | Msa0365920:intron | 10.0% |
| !!! | TTGTTTTTATTATACAATTA+GGG | + | chr3_1:60242145-60242164 | Msa0365920:intron | 10.0% |
| !!! | TTTTTATCTTCAAAATAATA+GGG | - | chr3_1:60242198-60242217 | None:intergenic | 10.0% |
| !!! | TTTTTTATCTTCAAAATAAT+AGG | - | chr3_1:60242199-60242218 | None:intergenic | 10.0% |
| !!! | TAAATTTTTTTATTTGATTC+GGG | - | chr3_1:60242363-60242382 | None:intergenic | 10.0% |
| !!! | TTATATATTTATTTTGAAAG+AGG | - | chr3_1:60242490-60242509 | None:intergenic | 10.0% |
| !! | CATACAAAATATAATATTAT+TGG | - | chr3_1:60242654-60242673 | None:intergenic | 10.0% |
| !!! | TTATATATATGTTTTTCAAT+AGG | + | chr3_1:60243171-60243190 | Msa0365920:intron | 10.0% |
| !!! | TCAAAGATTTTAATTACAAT+GGG | - | chr3_1:60241904-60241923 | None:intergenic | 15.0% |
| !!! | ATCAAAGATTTTAATTACAA+TGG | - | chr3_1:60241905-60241924 | None:intergenic | 15.0% |
| !! | TAATTAAAATCTTTGATCTT+CGG | + | chr3_1:60241908-60241927 | Msa0365920:intron | 15.0% |
| !! | AAAATTATTACTGCTATTAA+TGG | + | chr3_1:60242279-60242298 | Msa0365920:intron | 15.0% |
| !!! | ATCTTTCATTTTTTCAAAAA+CGG | + | chr3_1:60242308-60242327 | Msa0365920:intron | 15.0% |
| !! | CATATAAAATCAATTATTGT+TGG | + | chr3_1:60242406-60242425 | Msa0365920:intron | 15.0% |
| !! | AAATGGAAAAAATAAAATGT+TGG | + | chr3_1:60242861-60242880 | Msa0365920:intron | 15.0% |
| !! | AATAAAAAACATCAAAATCA+TGG | - | chr3_1:60242894-60242913 | None:intergenic | 15.0% |
| !! | AAATTATATATGACTGAATA+GGG | - | chr3_1:60243153-60243172 | None:intergenic | 15.0% |
| !! | TAAATTATATATGACTGAAT+AGG | - | chr3_1:60243154-60243173 | None:intergenic | 15.0% |
| !!! | TCAAAGATTTTAATTACAAT+GGG | - | chr3_1:60241904-60241923 | None:intergenic | 15.0% |
| !!! | ATCAAAGATTTTAATTACAA+TGG | - | chr3_1:60241905-60241924 | None:intergenic | 15.0% |
| !! | TAATTAAAATCTTTGATCTT+CGG | + | chr3_1:60241908-60241927 | Msa0365920:intron | 15.0% |
| !! | AAAATTATTACTGCTATTAA+TGG | + | chr3_1:60242279-60242298 | Msa0365920:intron | 15.0% |
| !!! | ATCTTTCATTTTTTCAAAAA+CGG | + | chr3_1:60242308-60242327 | Msa0365920:intron | 15.0% |
| !! | CATATAAAATCAATTATTGT+TGG | + | chr3_1:60242406-60242425 | Msa0365920:intron | 15.0% |
| !! | AAATGGAAAAAATAAAATGT+TGG | + | chr3_1:60242861-60242880 | Msa0365920:intron | 15.0% |
| !! | AATAAAAAACATCAAAATCA+TGG | - | chr3_1:60242894-60242913 | None:intergenic | 15.0% |
| !! | AAATTATATATGACTGAATA+GGG | - | chr3_1:60243153-60243172 | None:intergenic | 15.0% |
| !! | TAAATTATATATGACTGAAT+AGG | - | chr3_1:60243154-60243173 | None:intergenic | 15.0% |
| !!! | ATAAGTTTTATAGTTACCTT+GGG | - | chr3_1:60241941-60241960 | None:intergenic | 20.0% |
| !!! | TATAAGTTTTATAGTTACCT+TGG | - | chr3_1:60241942-60241961 | None:intergenic | 20.0% |
| !!! | GATGAATATTTTTTCTACTT+TGG | - | chr3_1:60242104-60242123 | None:intergenic | 20.0% |
| !! | AAAATAATAGGGTAAATCAT+TGG | - | chr3_1:60242187-60242206 | None:intergenic | 20.0% |
| !! | AGATAAAAAAAGTAAAATCG+TGG | + | chr3_1:60242209-60242228 | Msa0365920:intron | 20.0% |
| !!! | TCTTTCATTTTTTCAAAAAC+GGG | + | chr3_1:60242309-60242328 | Msa0365920:intron | 20.0% |
| !!! | ATCATTTTATGAAAACTTCT+AGG | - | chr3_1:60242629-60242648 | None:intergenic | 20.0% |
| !!! | TTGATAAAATGTTAAGTTGT+TGG | + | chr3_1:60242922-60242941 | Msa0365920:intron | 20.0% |
| !!! | AGTGCAATTTTTTTATTACA+CGG | - | chr3_1:60242970-60242989 | None:intergenic | 20.0% |
| !! | ATAAAAAAATTGCACTTGTT+TGG | + | chr3_1:60242974-60242993 | Msa0365920:intron | 20.0% |
| !! | AAAATTTATCCAAACATAAG+AGG | - | chr3_1:60243125-60243144 | None:intergenic | 20.0% |
| !!! | TTTAATTGATGACAATATGA+AGG | + | chr3_1:60243536-60243555 | Msa0365920:CDS | 20.0% |
| !! | TCAAAATCAAAATCATCAAA+TGG | - | chr3_1:60243798-60243817 | None:intergenic | 20.0% |
| !!! | ATAAGTTTTATAGTTACCTT+GGG | - | chr3_1:60241941-60241960 | None:intergenic | 20.0% |
| !!! | TATAAGTTTTATAGTTACCT+TGG | - | chr3_1:60241942-60241961 | None:intergenic | 20.0% |
| !!! | GATGAATATTTTTTCTACTT+TGG | - | chr3_1:60242104-60242123 | None:intergenic | 20.0% |
| !! | AAAATAATAGGGTAAATCAT+TGG | - | chr3_1:60242187-60242206 | None:intergenic | 20.0% |
| !! | AGATAAAAAAAGTAAAATCG+TGG | + | chr3_1:60242209-60242228 | Msa0365920:intron | 20.0% |
| !!! | TCTTTCATTTTTTCAAAAAC+GGG | + | chr3_1:60242309-60242328 | Msa0365920:intron | 20.0% |
| !!! | ATCATTTTATGAAAACTTCT+AGG | - | chr3_1:60242629-60242648 | None:intergenic | 20.0% |
| !!! | TTGATAAAATGTTAAGTTGT+TGG | + | chr3_1:60242922-60242941 | Msa0365920:intron | 20.0% |
| !!! | AGTGCAATTTTTTTATTACA+CGG | - | chr3_1:60242970-60242989 | None:intergenic | 20.0% |
| !! | ATAAAAAAATTGCACTTGTT+TGG | + | chr3_1:60242974-60242993 | Msa0365920:intron | 20.0% |
| !! | AAAATTTATCCAAACATAAG+AGG | - | chr3_1:60243125-60243144 | None:intergenic | 20.0% |
| !!! | TTTAATTGATGACAATATGA+AGG | + | chr3_1:60243536-60243555 | Msa0365920:CDS | 20.0% |
| !! | TCAAAATCAAAATCATCAAA+TGG | - | chr3_1:60243798-60243817 | None:intergenic | 20.0% |
| ! | ACATAATCAATAAGTCGAAA+CGG | + | chr3_1:60241765-60241784 | Msa0365920:CDS | 25.0% |
| ! | ACATTCAAAAAAAGAACAGA+AGG | + | chr3_1:60241794-60241813 | Msa0365920:CDS | 25.0% |
| ! | GCATGATTTAATTGAAACTA+AGG | - | chr3_1:60241836-60241855 | None:intergenic | 25.0% |
| !!! | GAAAAATTAGTTTTACAGTG+GGG | - | chr3_1:60241974-60241993 | None:intergenic | 25.0% |
| !!! | CGAAAAATTAGTTTTACAGT+GGG | - | chr3_1:60241975-60241994 | None:intergenic | 25.0% |
| !!! | ACGAAAAATTAGTTTTACAG+TGG | - | chr3_1:60241976-60241995 | None:intergenic | 25.0% |
| ! | ATGTAACTATTTCATCAACA+TGG | - | chr3_1:60242022-60242041 | None:intergenic | 25.0% |
| ! | TAAAAAGAATGAAAGTCTTG+TGG | - | chr3_1:60242242-60242261 | None:intergenic | 25.0% |
| ! | TACTTCGTAAAAAATGTTTG+AGG | + | chr3_1:60243019-60243038 | Msa0365920:intron | 25.0% |
| ! | AATAGAAAACCTCTTATGTT+TGG | + | chr3_1:60243113-60243132 | Msa0365920:intron | 25.0% |
| ! | TTCAATAGGTATAATGAAGA+AGG | + | chr3_1:60243185-60243204 | Msa0365920:intron | 25.0% |
| ! | TATGAGACTAACATGAATTA+TGG | + | chr3_1:60243729-60243748 | Msa0365920:CDS | 25.0% |
| ! | AAATCAAAATCATCAAATGG+TGG | - | chr3_1:60243795-60243814 | None:intergenic | 25.0% |
| ! | ACATAATCAATAAGTCGAAA+CGG | + | chr3_1:60241765-60241784 | Msa0365920:CDS | 25.0% |
| ! | ACATTCAAAAAAAGAACAGA+AGG | + | chr3_1:60241794-60241813 | Msa0365920:CDS | 25.0% |
| ! | GCATGATTTAATTGAAACTA+AGG | - | chr3_1:60241836-60241855 | None:intergenic | 25.0% |
| !!! | GAAAAATTAGTTTTACAGTG+GGG | - | chr3_1:60241974-60241993 | None:intergenic | 25.0% |
| !!! | CGAAAAATTAGTTTTACAGT+GGG | - | chr3_1:60241975-60241994 | None:intergenic | 25.0% |
| !!! | ACGAAAAATTAGTTTTACAG+TGG | - | chr3_1:60241976-60241995 | None:intergenic | 25.0% |
| ! | ATGTAACTATTTCATCAACA+TGG | - | chr3_1:60242022-60242041 | None:intergenic | 25.0% |
| ! | TAAAAAGAATGAAAGTCTTG+TGG | - | chr3_1:60242242-60242261 | None:intergenic | 25.0% |
| ! | TACTTCGTAAAAAATGTTTG+AGG | + | chr3_1:60243019-60243038 | Msa0365920:intron | 25.0% |
| ! | AATAGAAAACCTCTTATGTT+TGG | + | chr3_1:60243113-60243132 | Msa0365920:intron | 25.0% |
| ! | TTCAATAGGTATAATGAAGA+AGG | + | chr3_1:60243185-60243204 | Msa0365920:intron | 25.0% |
| ! | TATGAGACTAACATGAATTA+TGG | + | chr3_1:60243729-60243748 | Msa0365920:CDS | 25.0% |
| ! | AAATCAAAATCATCAAATGG+TGG | - | chr3_1:60243795-60243814 | None:intergenic | 25.0% |
| CTATAAAACTTATACCCTTG+AGG | + | chr3_1:60241948-60241967 | Msa0365920:intron | 30.0% | |
| ATAATAGGGTAAATCATTGG+TGG | - | chr3_1:60242184-60242203 | None:intergenic | 30.0% | |
| ! | TCGTAAAAAATGTTTGAGGT+TGG | + | chr3_1:60243023-60243042 | Msa0365920:intron | 30.0% |
| GAGGTATGTGTAATAATCTA+TGG | + | chr3_1:60243237-60243256 | Msa0365920:CDS | 30.0% | |
| ATAATCTATGGTGAAAACCA+TGG | + | chr3_1:60243249-60243268 | Msa0365920:CDS | 30.0% | |
| !! | CCAACATCTTTTTGTTTCTT+TGG | - | chr3_1:60243347-60243366 | None:intergenic | 30.0% |
| CCAAAGAAACAAAAAGATGT+TGG | + | chr3_1:60243344-60243363 | Msa0365920:CDS | 30.0% | |
| ! | TGTTGGATCTATATAGCTTT+TGG | + | chr3_1:60243361-60243380 | Msa0365920:CDS | 30.0% |
| ! | TATATAGCTTTTGGATGCAA+AGG | + | chr3_1:60243370-60243389 | Msa0365920:CDS | 30.0% |
| ATATGAAGGAAGTTAATCAG+AGG | + | chr3_1:60243550-60243569 | Msa0365920:CDS | 30.0% | |
| TATAAAGGATGGAGATTTGT+TGG | + | chr3_1:60243626-60243645 | Msa0365920:CDS | 30.0% | |
| AGATTGATCCAAATCCATTT+GGG | - | chr3_1:60243833-60243852 | None:intergenic | 30.0% | |
| TAGATTGATCCAAATCCATT+TGG | - | chr3_1:60243834-60243853 | None:intergenic | 30.0% | |
| CTATAAAACTTATACCCTTG+AGG | + | chr3_1:60241948-60241967 | Msa0365920:intron | 30.0% | |
| ATAATAGGGTAAATCATTGG+TGG | - | chr3_1:60242184-60242203 | None:intergenic | 30.0% | |
| ! | TCGTAAAAAATGTTTGAGGT+TGG | + | chr3_1:60243023-60243042 | Msa0365920:intron | 30.0% |
| GAGGTATGTGTAATAATCTA+TGG | + | chr3_1:60243237-60243256 | Msa0365920:CDS | 30.0% | |
| ATAATCTATGGTGAAAACCA+TGG | + | chr3_1:60243249-60243268 | Msa0365920:CDS | 30.0% | |
| !! | CCAACATCTTTTTGTTTCTT+TGG | - | chr3_1:60243347-60243366 | None:intergenic | 30.0% |
| CCAAAGAAACAAAAAGATGT+TGG | + | chr3_1:60243344-60243363 | Msa0365920:CDS | 30.0% | |
| ! | TGTTGGATCTATATAGCTTT+TGG | + | chr3_1:60243361-60243380 | Msa0365920:CDS | 30.0% |
| ! | TATATAGCTTTTGGATGCAA+AGG | + | chr3_1:60243370-60243389 | Msa0365920:CDS | 30.0% |
| ATATGAAGGAAGTTAATCAG+AGG | + | chr3_1:60243550-60243569 | Msa0365920:CDS | 30.0% | |
| TATAAAGGATGGAGATTTGT+TGG | + | chr3_1:60243626-60243645 | Msa0365920:CDS | 30.0% | |
| AGATTGATCCAAATCCATTT+GGG | - | chr3_1:60243833-60243852 | None:intergenic | 30.0% | |
| TAGATTGATCCAAATCCATT+TGG | - | chr3_1:60243834-60243853 | None:intergenic | 30.0% | |
| AATCAATAAGTCGAAACGGA+TGG | + | chr3_1:60241769-60241788 | Msa0365920:CDS | 35.0% | |
| ! | TTTTCGTCGACATACATGAT+TGG | + | chr3_1:60241989-60242008 | Msa0365920:intron | 35.0% |
| ! | TTTTCAAAAACGGGCAAAGT+CGG | + | chr3_1:60242318-60242337 | Msa0365920:intron | 35.0% |
| ATATGCACTCTCGTTCAATT+TGG | + | chr3_1:60242566-60242585 | Msa0365920:intron | 35.0% | |
| GAAGTATGAGAAAGCAATGA+TGG | + | chr3_1:60243410-60243429 | Msa0365920:CDS | 35.0% | |
| CCAACATTATAGTTACGAGT+AGG | - | chr3_1:60243480-60243499 | None:intergenic | 35.0% | |
| CCTACTCGTAACTATAATGT+TGG | + | chr3_1:60243477-60243496 | Msa0365920:CDS | 35.0% | |
| TAATCAGAGGTTGGATTCAA+TGG | + | chr3_1:60243563-60243582 | Msa0365920:CDS | 35.0% | |
| AAATGGAGCTGAAGCTATAA+AGG | + | chr3_1:60243611-60243630 | Msa0365920:CDS | 35.0% | |
| ! | CATGTTAGTCTCATAACCAT+GGG | - | chr3_1:60243724-60243743 | None:intergenic | 35.0% |
| ! | TCATGTTAGTCTCATAACCA+TGG | - | chr3_1:60243725-60243744 | None:intergenic | 35.0% |
| !!! | GATTTTGATTTCGACCCAAA+TGG | + | chr3_1:60243816-60243835 | Msa0365920:CDS | 35.0% |
| AATCAATAAGTCGAAACGGA+TGG | + | chr3_1:60241769-60241788 | Msa0365920:CDS | 35.0% | |
| ! | TTTTCGTCGACATACATGAT+TGG | + | chr3_1:60241989-60242008 | Msa0365920:intron | 35.0% |
| ! | TTTTCAAAAACGGGCAAAGT+CGG | + | chr3_1:60242318-60242337 | Msa0365920:intron | 35.0% |
| ATATGCACTCTCGTTCAATT+TGG | + | chr3_1:60242566-60242585 | Msa0365920:intron | 35.0% | |
| GAAGTATGAGAAAGCAATGA+TGG | + | chr3_1:60243410-60243429 | Msa0365920:CDS | 35.0% | |
| CCAACATTATAGTTACGAGT+AGG | - | chr3_1:60243480-60243499 | None:intergenic | 35.0% | |
| CCTACTCGTAACTATAATGT+TGG | + | chr3_1:60243477-60243496 | Msa0365920:CDS | 35.0% | |
| TAATCAGAGGTTGGATTCAA+TGG | + | chr3_1:60243563-60243582 | Msa0365920:CDS | 35.0% | |
| AAATGGAGCTGAAGCTATAA+AGG | + | chr3_1:60243611-60243630 | Msa0365920:CDS | 35.0% | |
| ! | CATGTTAGTCTCATAACCAT+GGG | - | chr3_1:60243724-60243743 | None:intergenic | 35.0% |
| ! | TCATGTTAGTCTCATAACCA+TGG | - | chr3_1:60243725-60243744 | None:intergenic | 35.0% |
| !!! | GATTTTGATTTCGACCCAAA+TGG | + | chr3_1:60243816-60243835 | Msa0365920:CDS | 35.0% |
| CACTCTCGTTCAATTTGGTT+TGG | + | chr3_1:60242571-60242590 | Msa0365920:intron | 40.0% | |
| TGCTTTCTCATACTTCTCTC+TGG | - | chr3_1:60243406-60243425 | None:intergenic | 40.0% | |
| GAAGGAAGTTAATCAGAGGT+TGG | + | chr3_1:60243554-60243573 | Msa0365920:CDS | 40.0% | |
| TCCATTTACAACCTGCTCAT+GGG | - | chr3_1:60243598-60243617 | None:intergenic | 40.0% | |
| AAGTGATGAGCAACTACCTA+TGG | + | chr3_1:60243758-60243777 | Msa0365920:CDS | 40.0% | |
| AATCATCAAATGGTGGCATG+AGG | - | chr3_1:60243788-60243807 | None:intergenic | 40.0% | |
| ! | GATTTCGACCCAAATGGATT+TGG | + | chr3_1:60243822-60243841 | Msa0365920:CDS | 40.0% |
| CACTCTCGTTCAATTTGGTT+TGG | + | chr3_1:60242571-60242590 | Msa0365920:intron | 40.0% | |
| TGCTTTCTCATACTTCTCTC+TGG | - | chr3_1:60243406-60243425 | None:intergenic | 40.0% | |
| GAAGGAAGTTAATCAGAGGT+TGG | + | chr3_1:60243554-60243573 | Msa0365920:CDS | 40.0% | |
| TCCATTTACAACCTGCTCAT+GGG | - | chr3_1:60243598-60243617 | None:intergenic | 40.0% | |
| AAGTGATGAGCAACTACCTA+TGG | + | chr3_1:60243758-60243777 | Msa0365920:CDS | 40.0% | |
| AATCATCAAATGGTGGCATG+AGG | - | chr3_1:60243788-60243807 | None:intergenic | 40.0% | |
| ! | GATTTCGACCCAAATGGATT+TGG | + | chr3_1:60243822-60243841 | Msa0365920:CDS | 40.0% |
| AATGAACTGAGCACCCTTTG+TGG | + | chr3_1:60243210-60243229 | Msa0365920:CDS | 45.0% | |
| ATGAACTGAGCACCCTTTGT+GGG | + | chr3_1:60243211-60243230 | Msa0365920:CDS | 45.0% | |
| ACATACCTCTACCCCACAAA+GGG | - | chr3_1:60243226-60243245 | None:intergenic | 45.0% | |
| ACCATGGTCAAGCAGAAGTT+TGG | + | chr3_1:60243265-60243284 | Msa0365920:CDS | 45.0% | |
| CACACGTTCTAGTCCTATCA+CGG | - | chr3_1:60243295-60243314 | None:intergenic | 45.0% | |
| CTCCATTTACAACCTGCTCA+TGG | - | chr3_1:60243599-60243618 | None:intergenic | 45.0% | |
| GGAGCTGAAGCTATAAAGGA+TGG | + | chr3_1:60243615-60243634 | Msa0365920:CDS | 45.0% | |
| AGGAGATACACGGGATAACA+TGG | + | chr3_1:60243683-60243702 | Msa0365920:CDS | 45.0% | |
| TACACGGGATAACATGGATG+AGG | + | chr3_1:60243689-60243708 | Msa0365920:CDS | 45.0% | |
| AATGAACTGAGCACCCTTTG+TGG | + | chr3_1:60243210-60243229 | Msa0365920:CDS | 45.0% | |
| ATGAACTGAGCACCCTTTGT+GGG | + | chr3_1:60243211-60243230 | Msa0365920:CDS | 45.0% | |
| ACATACCTCTACCCCACAAA+GGG | - | chr3_1:60243226-60243245 | None:intergenic | 45.0% | |
| ACCATGGTCAAGCAGAAGTT+TGG | + | chr3_1:60243265-60243284 | Msa0365920:CDS | 45.0% | |
| CACACGTTCTAGTCCTATCA+CGG | - | chr3_1:60243295-60243314 | None:intergenic | 45.0% | |
| CTCCATTTACAACCTGCTCA+TGG | - | chr3_1:60243599-60243618 | None:intergenic | 45.0% | |
| GGAGCTGAAGCTATAAAGGA+TGG | + | chr3_1:60243615-60243634 | Msa0365920:CDS | 45.0% | |
| AGGAGATACACGGGATAACA+TGG | + | chr3_1:60243683-60243702 | Msa0365920:CDS | 45.0% | |
| TACACGGGATAACATGGATG+AGG | + | chr3_1:60243689-60243708 | Msa0365920:CDS | 45.0% | |
| !!! | TTAAATTTTTTTATTTGATT+CGG | - | chr3_1:60242364-60242383 | None:intergenic | 5.0% |
| !! | TCAAATAAAAAAATTTAAAT+TGG | + | chr3_1:60242366-60242385 | Msa0365920:intron | 5.0% |
| !!! | TTAAATTTTTTTATTTGATT+CGG | - | chr3_1:60242364-60242383 | None:intergenic | 5.0% |
| !! | TCAAATAAAAAAATTTAAAT+TGG | + | chr3_1:60242366-60242385 | Msa0365920:intron | 5.0% |
| ! | GTTTTACAGTGGGGCCTCAA+GGG | - | chr3_1:60241965-60241984 | None:intergenic | 50.0% |
| ! | AGTTTTACAGTGGGGCCTCA+AGG | - | chr3_1:60241966-60241985 | None:intergenic | 50.0% |
| TCAAAAACGGGCAAAGTCGG+TGG | + | chr3_1:60242321-60242340 | Msa0365920:intron | 50.0% | |
| TGAACTGAGCACCCTTTGTG+GGG | + | chr3_1:60243212-60243231 | Msa0365920:CDS | 50.0% | |
| CACATACCTCTACCCCACAA+AGG | - | chr3_1:60243227-60243246 | None:intergenic | 50.0% | |
| GCCAAACTTCTGCTTGACCA+TGG | - | chr3_1:60243269-60243288 | None:intergenic | 50.0% | |
| GAAGTTTGGCCATCCGTGAT+AGG | + | chr3_1:60243279-60243298 | Msa0365920:CDS | 50.0% | |
| CGTTCTAGTCCTATCACGGA+TGG | - | chr3_1:60243291-60243310 | None:intergenic | 50.0% | |
| TACAACCTGCTCATGGGCTT+GGG | - | chr3_1:60243592-60243611 | None:intergenic | 50.0% | |
| TTACAACCTGCTCATGGGCT+TGG | - | chr3_1:60243593-60243612 | None:intergenic | 50.0% | |
| GCCCATGAGCAGGTTGTAAA+TGG | + | chr3_1:60243594-60243613 | Msa0365920:CDS | 50.0% | |
| GATGAGGTTGCTGATACCCA+TGG | + | chr3_1:60243705-60243724 | Msa0365920:CDS | 50.0% | |
| ! | GTTTTACAGTGGGGCCTCAA+GGG | - | chr3_1:60241965-60241984 | None:intergenic | 50.0% |
| ! | AGTTTTACAGTGGGGCCTCA+AGG | - | chr3_1:60241966-60241985 | None:intergenic | 50.0% |
| TCAAAAACGGGCAAAGTCGG+TGG | + | chr3_1:60242321-60242340 | Msa0365920:intron | 50.0% | |
| TGAACTGAGCACCCTTTGTG+GGG | + | chr3_1:60243212-60243231 | Msa0365920:CDS | 50.0% | |
| CACATACCTCTACCCCACAA+AGG | - | chr3_1:60243227-60243246 | None:intergenic | 50.0% | |
| GCCAAACTTCTGCTTGACCA+TGG | - | chr3_1:60243269-60243288 | None:intergenic | 50.0% | |
| GAAGTTTGGCCATCCGTGAT+AGG | + | chr3_1:60243279-60243298 | Msa0365920:CDS | 50.0% | |
| CGTTCTAGTCCTATCACGGA+TGG | - | chr3_1:60243291-60243310 | None:intergenic | 50.0% | |
| TACAACCTGCTCATGGGCTT+GGG | - | chr3_1:60243592-60243611 | None:intergenic | 50.0% | |
| TTACAACCTGCTCATGGGCT+TGG | - | chr3_1:60243593-60243612 | None:intergenic | 50.0% | |
| GCCCATGAGCAGGTTGTAAA+TGG | + | chr3_1:60243594-60243613 | Msa0365920:CDS | 50.0% | |
| GATGAGGTTGCTGATACCCA+TGG | + | chr3_1:60243705-60243724 | Msa0365920:CDS | 50.0% | |
| ! | GATCTTCGGTGTGTGTCCCA+AGG | + | chr3_1:60241922-60241941 | Msa0365920:intron | 55.0% |
| ! | ATTGCTCAAGTGCCGCTGAG+TGG | + | chr3_1:60243660-60243679 | Msa0365920:CDS | 55.0% |
| CGTGTATCTCCTCCACTCAG+CGG | - | chr3_1:60243675-60243694 | None:intergenic | 55.0% | |
| CGCTGAGTGGAGGAGATACA+CGG | + | chr3_1:60243673-60243692 | Msa0365920:CDS | 55.0% | |
| GCTGAGTGGAGGAGATACAC+GGG | + | chr3_1:60243674-60243693 | Msa0365920:CDS | 55.0% | |
| GGTGGCATGAGGAAGTCCAT+AGG | - | chr3_1:60243777-60243796 | None:intergenic | 55.0% | |
| ! | GATCTTCGGTGTGTGTCCCA+AGG | + | chr3_1:60241922-60241941 | Msa0365920:intron | 55.0% |
| ! | ATTGCTCAAGTGCCGCTGAG+TGG | + | chr3_1:60243660-60243679 | Msa0365920:CDS | 55.0% |
| CGTGTATCTCCTCCACTCAG+CGG | - | chr3_1:60243675-60243694 | None:intergenic | 55.0% | |
| CGCTGAGTGGAGGAGATACA+CGG | + | chr3_1:60243673-60243692 | Msa0365920:CDS | 55.0% | |
| GCTGAGTGGAGGAGATACAC+GGG | + | chr3_1:60243674-60243693 | Msa0365920:CDS | 55.0% | |
| GGTGGCATGAGGAAGTCCAT+AGG | - | chr3_1:60243777-60243796 | None:intergenic | 55.0% | |
| GAGCACCCTTTGTGGGGTAG+AGG | + | chr3_1:60243218-60243237 | Msa0365920:CDS | 60.0% | |
| GGTAACCCAAGCCCATGAGC+AGG | + | chr3_1:60243584-60243603 | Msa0365920:CDS | 60.0% | |
| GAGCACCCTTTGTGGGGTAG+AGG | + | chr3_1:60243218-60243237 | Msa0365920:CDS | 60.0% | |
| GGTAACCCAAGCCCATGAGC+AGG | + | chr3_1:60243584-60243603 | Msa0365920:CDS | 60.0% | |
| ! | GCTCAAGTGCCGCTGAGTGG+AGG | + | chr3_1:60243663-60243682 | Msa0365920:CDS | 65.0% |
| ! | GCTCAAGTGCCGCTGAGTGG+AGG | + | chr3_1:60243663-60243682 | Msa0365920:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 60241737 | 60243854 | 60241737 | ID=Msa0365920;Name=Msa0365920 |
| chr3_1 | mRNA | 60241737 | 60243854 | 60241737 | ID=Msa0365920-mRNA-1;Parent=Msa0365920;Name=Msa0365920-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|0|0|2|0|246 |
| chr3_1 | exon | 60241737 | 60241815 | 60241737 | ID=Msa0365920-mRNA-1:exon:11612;Parent=Msa0365920-mRNA-1 |
| chr3_1 | exon | 60243193 | 60243854 | 60243193 | ID=Msa0365920-mRNA-1:exon:11613;Parent=Msa0365920-mRNA-1 |
| chr3_1 | CDS | 60241737 | 60241815 | 60241737 | ID=Msa0365920-mRNA-1:cds;Parent=Msa0365920-mRNA-1 |
| chr3_1 | CDS | 60243193 | 60243854 | 60243193 | ID=Msa0365920-mRNA-1:cds;Parent=Msa0365920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
