Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365980 | XP_013460360.1 | 87.611 | 226 | 2 | 1 | 29 | 228 | 1 | 226 | 3.58e-137 | 394 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365980 | sp|Q96S44|PRPK_HUMAN | 44.545 | 220 | 93 | 3 | 38 | 228 | 34 | 253 | 3.58e-51 | 169 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365980 | I3SWE5 | 87.611 | 226 | 2 | 1 | 29 | 228 | 1 | 226 | 1.71e-137 | 394 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365980 | MtrunA17_Chr3g0106561 | 87.611 | 226 | 2 | 1 | 29 | 228 | 1 | 226 | 3.30e-141 | 394 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365980 | AT5G26110.3 | 68.584 | 226 | 45 | 1 | 29 | 228 | 1 | 226 | 8.96e-109 | 312 |
| Msa0365980 | AT5G26110.1 | 68.584 | 226 | 45 | 1 | 29 | 228 | 1 | 226 | 8.96e-109 | 312 |
| Msa0365980 | AT5G26110.2 | 78.616 | 159 | 34 | 0 | 70 | 228 | 5 | 163 | 3.43e-92 | 268 |
| Msa0365980 | AT1G08120.1 | 66.667 | 42 | 14 | 0 | 29 | 70 | 5 | 46 | 2.12e-11 | 58.9 |
Find 46 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAAAGGAATTTGATATTA+TGG | 0.109939 | 3_1:-60361897 | Msa0365980:CDS |
| TCGCAATTACATCACCAATT+TGG | 0.175752 | 3_1:+60360784 | None:intergenic |
| ACGGACAATCTCACCGTTTA+TGG | 0.210206 | 3_1:+60362175 | None:intergenic |
| CGCAATTACATCACCAATTT+GGG | 0.231694 | 3_1:+60360785 | None:intergenic |
| ACATTGAAGGGTTAAATTAA+AGG | 0.265925 | 3_1:-60361912 | Msa0365980:intron |
| TTAAAGGAATTTGATATTAT+GGG | 0.293100 | 3_1:-60361896 | Msa0365980:CDS |
| AAAGATGTATTTCTAGAATT+CGG | 0.356104 | 3_1:-60360849 | Msa0365980:CDS |
| GGAAAGATTGCGTCCCAAAT+TGG | 0.363205 | 3_1:-60360798 | Msa0365980:CDS |
| CATGATGGTGGTCTTGTTCA+TGG | 0.376724 | 3_1:-60360756 | Msa0365980:CDS |
| AATGTTAAAGTGTGCGATAC+AGG | 0.386568 | 3_1:+60360897 | None:intergenic |
| TTAACATTTGAATTTGTTGA+AGG | 0.448709 | 3_1:-60360882 | Msa0365980:CDS |
| TCGTCGTCCGCCGCCATAAA+CGG | 0.449706 | 3_1:-60362188 | Msa0365980:intron |
| AAATCGACGGCTTTATCTTC+TGG | 0.462118 | 3_1:+60360530 | None:intergenic |
| TGGTGTCAATGAAGAGCGCC+TGG | 0.498746 | 3_1:-60360820 | Msa0365980:CDS |
| GTGTAGGTTCTTATTGACTT+CGG | 0.506179 | 3_1:-60360575 | Msa0365980:intron |
| TTTGGGACGCAATCTTTCCC+AGG | 0.521798 | 3_1:+60360802 | None:intergenic |
| TAAAGGAATTTGATATTATG+GGG | 0.522816 | 3_1:-60361895 | Msa0365980:CDS |
| AAAGAATGATACTGATCAGT+TGG | 0.526434 | 3_1:-60360706 | Msa0365980:intron |
| TATCTACATCAATGGTTCAA+AGG | 0.529855 | 3_1:-60357959 | None:intergenic |
| GTTTCGATGCATTCTTCATG+TGG | 0.542927 | 3_1:-60360485 | Msa0365980:CDS |
| AGAAATACATCTTTGACTGA+AGG | 0.549895 | 3_1:+60360858 | None:intergenic |
| ATGAAGAATGCATCGAAACA+AGG | 0.554852 | 3_1:+60360489 | None:intergenic |
| GTCTGCAAGCTTGTTCATTG+TGG | 0.559060 | 3_1:+60358294 | None:intergenic |
| TTCTAAAACATACAAATCGA+CGG | 0.561624 | 3_1:+60360517 | None:intergenic |
| TACTCCTGTGCTGTATGCTG+TGG | 0.569321 | 3_1:-60360922 | Msa0365980:CDS |
| GGACGAAAGAGGACCATGGT+TGG | 0.570787 | 3_1:-60358175 | Msa0365980:CDS |
| GGGAAGAAGGTCTGTTGTGA+AGG | 0.577484 | 3_1:-60361391 | Msa0365980:CDS |
| GGATCCACAGCATACAGCAC+AGG | 0.592160 | 3_1:+60360918 | None:intergenic |
| AATCTCACCGTTTATGGCGG+CGG | 0.595864 | 3_1:+60362181 | None:intergenic |
| TGCGACAAAGAGGACGAAAG+AGG | 0.603308 | 3_1:-60358186 | Msa0365980:CDS |
| ACAACAAAAGCAAGGCGACT+CGG | 0.605540 | 3_1:-60360951 | Msa0365980:intron |
| TTGTTTGATGAGAATGAGAG+AGG | 0.606756 | 3_1:+60361850 | None:intergenic |
| TTTCTAGAATTCGGATCATG+TGG | 0.606976 | 3_1:-60360840 | Msa0365980:CDS |
| TGAAGAATGCATCGAAACAA+GGG | 0.628508 | 3_1:+60360490 | None:intergenic |
| GACAATCTCACCGTTTATGG+CGG | 0.636306 | 3_1:+60362178 | None:intergenic |
| CAACTTGTAGTGCGACAAAG+AGG | 0.647624 | 3_1:-60358196 | Msa0365980:intron |
| TGCAGAAAAGAAAACACAGA+AGG | 0.648524 | 3_1:+60362225 | None:intergenic |
| ACAATGAACAAGCTTGCAGA+CGG | 0.653580 | 3_1:-60358292 | Msa0365980:intron |
| GCATTCTTCATGTGGTAATG+TGG | 0.655251 | 3_1:-60360477 | Msa0365980:intron |
| TCTCTCATTCTCATCAAACA+AGG | 0.656080 | 3_1:-60361848 | Msa0365980:CDS |
| AACTCAGAATCATCCAACCA+TGG | 0.691341 | 3_1:+60358162 | None:intergenic |
| GGTGTCAATGAAGAGCGCCT+GGG | 0.694865 | 3_1:-60360819 | Msa0365980:CDS |
| ACCGCAAATCATCAAAACAG+TGG | 0.700637 | 3_1:-60358321 | Msa0365980:CDS |
| GTAATTGCGAAGTTACATGA+TGG | 0.714444 | 3_1:-60360771 | Msa0365980:CDS |
| AAGAGGACGAAAGAGGACCA+TGG | 0.717008 | 3_1:-60358179 | Msa0365980:CDS |
| ATTGCGAAGTTACATGATGG+TGG | 0.726358 | 3_1:-60360768 | Msa0365980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTGATTTTTTACATAAT+GGG | + | chr3_1:60358422-60358441 | None:intergenic | 10.0% |
| !!! | AAAATTGATTTTTTACATAA+TGG | + | chr3_1:60358423-60358442 | None:intergenic | 10.0% |
| !!! | TTAATTTAAAATTGATTCAT+GGG | - | chr3_1:60358472-60358491 | Msa0365980:intron | 10.0% |
| !! | ATGTAATAAATATTAATTAC+AGG | + | chr3_1:60359527-60359546 | None:intergenic | 10.0% |
| !! | AATATTTATTACATTTACTT+AGG | - | chr3_1:60359533-60359552 | Msa0365980:intron | 10.0% |
| !!! | TTTTTTGAAAAAAAAACTAA+CGG | - | chr3_1:60360997-60361016 | Msa0365980:intron | 10.0% |
| !! | GTTGAAATACATAAAAAAAA+GGG | + | chr3_1:60358045-60358064 | None:intergenic | 15.0% |
| !! | AGTTGAAATACATAAAAAAA+AGG | + | chr3_1:60358046-60358065 | None:intergenic | 15.0% |
| !!! | TTTTATATAGTTTACATTGA+AGG | - | chr3_1:60358260-60358279 | Msa0365980:intron | 15.0% |
| !! | TTTATATAGTTTACATTGAA+GGG | - | chr3_1:60358261-60358280 | Msa0365980:intron | 15.0% |
| !! | ATTAAAGGAATTTGATATTA+TGG | - | chr3_1:60358288-60358307 | Msa0365980:intron | 15.0% |
| !! | TTAAAGGAATTTGATATTAT+GGG | - | chr3_1:60358289-60358308 | Msa0365980:intron | 15.0% |
| !!! | GAATCAATTTTAAATTAACA+AGG | + | chr3_1:60358470-60358489 | None:intergenic | 15.0% |
| !!! | GTTAATTTAAAATTGATTCA+TGG | - | chr3_1:60358471-60358490 | Msa0365980:intron | 15.0% |
| !!! | TTTTTATTAAAGATGAAGTT+AGG | - | chr3_1:60358913-60358932 | Msa0365980:intron | 15.0% |
| !! | TATTTAACACTATAACAATT+AGG | + | chr3_1:60359762-60359781 | None:intergenic | 15.0% |
| !!! | TTTTTAAAAAACTAACAGAA+GGG | + | chr3_1:60359915-60359934 | None:intergenic | 15.0% |
| !!! | TTTTTTAAAAAACTAACAGA+AGG | + | chr3_1:60359916-60359935 | None:intergenic | 15.0% |
| !! | TTAAAAAAAAACGTTAACTT+TGG | - | chr3_1:60359928-60359947 | Msa0365980:intron | 15.0% |
| !!! | TAAGAAATTTTTTTGAGTTT+GGG | + | chr3_1:60360088-60360107 | None:intergenic | 15.0% |
| !! | GTTCTTTCAAAAAATAATAT+GGG | + | chr3_1:60360135-60360154 | None:intergenic | 15.0% |
| !! | TGTTCTTTCAAAAAATAATA+TGG | + | chr3_1:60360136-60360155 | None:intergenic | 15.0% |
| !! | AATTTCTAATAGTATAAAAC+AGG | + | chr3_1:60361322-60361341 | None:intergenic | 15.0% |
| !! | TTATATATACAGGTAAATAA+GGG | + | chr3_1:60361688-60361707 | None:intergenic | 15.0% |
| !! | AATACTAGAAAAATATTAGA+TGG | + | chr3_1:60361928-60361947 | None:intergenic | 15.0% |
| !! | AAATAGAGAAAATATTGTGA+TGG | + | chr3_1:60358145-60358164 | None:intergenic | 20.0% |
| !! | TAAAGGAATTTGATATTATG+GGG | - | chr3_1:60358290-60358309 | Msa0365980:intron | 20.0% |
| !! | TAAGTTTAATTCAAACTCAT+TGG | - | chr3_1:60358371-60358390 | Msa0365980:intron | 20.0% |
| !! | TACAAAATATTGTCCAATAA+CGG | - | chr3_1:60358606-60358625 | Msa0365980:intron | 20.0% |
| !! | TCACAAATAGTAAAAAATAG+CGG | + | chr3_1:60358668-60358687 | None:intergenic | 20.0% |
| !!! | TTTATTTTTGTTACAGAAAG+AGG | + | chr3_1:60358995-60359014 | None:intergenic | 20.0% |
| !! | AGTTTATGAAAACAACTTAA+TGG | + | chr3_1:60359044-60359063 | None:intergenic | 20.0% |
| !!! | TTAACATTTGAATTTGTTGA+AGG | - | chr3_1:60359303-60359322 | Msa0365980:intron | 20.0% |
| !!! | AAAGATGTATTTCTAGAATT+CGG | - | chr3_1:60359336-60359355 | Msa0365980:intron | 20.0% |
| !! | TGTTATAGTGTTAAATACTA+AGG | - | chr3_1:60359765-60359784 | Msa0365980:intron | 20.0% |
| !! | CAATAATAGAAAATACAAGT+GGG | + | chr3_1:60360961-60360980 | None:intergenic | 20.0% |
| !! | TCAATAATAGAAAATACAAG+TGG | + | chr3_1:60360960-60360979 | None:intergenic | 20.0% |
| !!! | TTGATGAATTTTGTATATGT+TGG | + | chr3_1:60360047-60360066 | None:intergenic | 20.0% |
| !!! | CTAAGAAATTTTTTTGAGTT+TGG | + | chr3_1:60360089-60360108 | None:intergenic | 20.0% |
| !!! | TACTTTTGCTAAAATAGATT+TGG | - | chr3_1:60360740-60360759 | Msa0365980:CDS | 20.0% |
| !!! | ACTTTTGCTAAAATAGATTT+GGG | - | chr3_1:60360741-60360760 | Msa0365980:CDS | 20.0% |
| !! | TCAATAATAGAAAATACAAG+TGG | - | chr3_1:60360960-60360979 | Msa0365980:intron | 20.0% |
| !! | CAATAATAGAAAATACAAGT+GGG | - | chr3_1:60360961-60360980 | Msa0365980:intron | 20.0% |
| !!! | TTATCCTCTTAATGATTTTT+GGG | + | chr3_1:60361283-60361302 | None:intergenic | 20.0% |
| !!! | TTTATCCTCTTAATGATTTT+TGG | + | chr3_1:60361284-60361303 | None:intergenic | 20.0% |
| !!! | AAATTTTGAACAAGAACTTT+AGG | - | chr3_1:60361371-60361390 | Msa0365980:intron | 20.0% |
| !! | GTTATATATACAGGTAAATA+AGG | + | chr3_1:60361689-60361708 | None:intergenic | 20.0% |
| !!! | TTTTAACAATAGATAATGCA+AGG | - | chr3_1:60361721-60361740 | Msa0365980:intron | 20.0% |
| !!! | CTTTGTTATTTAAGAAAGAT+TGG | - | chr3_1:60361755-60361774 | Msa0365980:intron | 20.0% |
| !! | ATTGATTATTGAAATTTGTC+TGG | - | chr3_1:60361815-60361834 | Msa0365980:intron | 20.0% |
| !!! | TATTTTGATATCTACATCAA+TGG | - | chr3_1:60362218-60362237 | Msa0365980:CDS | 20.0% |
| ! | CATAAAAAAAAGGGAAAACA+TGG | + | chr3_1:60358036-60358055 | None:intergenic | 25.0% |
| ! | AATTGAAGTTGAACAAGTTT+GGG | + | chr3_1:60358218-60358237 | None:intergenic | 25.0% |
| ! | TAATTGAAGTTGAACAAGTT+TGG | + | chr3_1:60358219-60358238 | None:intergenic | 25.0% |
| ! | ACATTGAAGGGTTAAATTAA+AGG | - | chr3_1:60358273-60358292 | Msa0365980:intron | 25.0% |
| ! | AAAGTTTCAATCTTTCATTG+TGG | - | chr3_1:60358503-60358522 | Msa0365980:intron | 25.0% |
| ! | CTATTTGTGATTGACAATAT+TGG | - | chr3_1:60358678-60358697 | Msa0365980:intron | 25.0% |
| ! | TATTGGATTTGTGAATTTGA+AGG | - | chr3_1:60358695-60358714 | Msa0365980:intron | 25.0% |
| ! | TTTGTGAATTTGAAGGAAAT+TGG | - | chr3_1:60358702-60358721 | Msa0365980:intron | 25.0% |
| ! | ATTGGATTTACAATAGCTTA+TGG | - | chr3_1:60358720-60358739 | Msa0365980:intron | 25.0% |
| ! | AAACTATACTACCAAGTTTA+TGG | - | chr3_1:60359059-60359078 | Msa0365980:intron | 25.0% |
| ! | AATAAGCTGAAAACAAGTTA+TGG | - | chr3_1:60359083-60359102 | Msa0365980:intron | 25.0% |
| ! | TTTCCATAAACTCTTTCAAA+CGG | - | chr3_1:60359121-60359140 | Msa0365980:intron | 25.0% |
| ! | CAGTAGATAAGTTATCTAAT+TGG | - | chr3_1:60359161-60359180 | Msa0365980:intron | 25.0% |
| !!! | TTCTAAAACATACAAATCGA+CGG | + | chr3_1:60359671-60359690 | None:intergenic | 25.0% |
| ! | CTATAACAATTAGGACTATT+GGG | + | chr3_1:60359753-60359772 | None:intergenic | 25.0% |
| ! | ACTATAACAATTAGGACTAT+TGG | + | chr3_1:60359754-60359773 | None:intergenic | 25.0% |
| ! | AATACTAAGGCTATAAAAAC+AGG | - | chr3_1:60359778-60359797 | Msa0365980:intron | 25.0% |
| ! | ATACTAAGGCTATAAAAACA+GGG | - | chr3_1:60359779-60359798 | Msa0365980:intron | 25.0% |
| ! | GAAACGCAAAAATAAGTTAA+GGG | + | chr3_1:60361094-60361113 | None:intergenic | 25.0% |
| ! | TGAAACGCAAAAATAAGTTA+AGG | + | chr3_1:60361093-60361112 | None:intergenic | 25.0% |
| !!! | CTTATTTTTGCGTTTCATTT+TGG | - | chr3_1:60359827-60359846 | Msa0365980:intron | 25.0% |
| !! | TTGAGACAGTTTAAAGTTAA+AGG | + | chr3_1:60359854-60359873 | None:intergenic | 25.0% |
| ! | AACTTTAAACTGTCTCAATT+TGG | - | chr3_1:60359856-60359875 | Msa0365980:intron | 25.0% |
| ! | TTGCTAAGAAACAATAATCT+GGG | + | chr3_1:60360162-60360181 | None:intergenic | 25.0% |
| ! | AAAACAAATAAGAAAGGAGA+GGG | + | chr3_1:60360696-60360715 | None:intergenic | 25.0% |
| ! | AAAAACAAATAAGAAAGGAG+AGG | + | chr3_1:60360697-60360716 | None:intergenic | 25.0% |
| ! | GAGAGAAAAACAAATAAGAA+AGG | + | chr3_1:60360702-60360721 | None:intergenic | 25.0% |
| !! | TTTTCAAAAAACGTTAACTG+TGG | + | chr3_1:60360988-60361007 | None:intergenic | 25.0% |
| ! | TTGAAAAAAAAACTAACGGA+AGG | - | chr3_1:60361001-60361020 | Msa0365980:intron | 25.0% |
| ! | TGAAAAAAAAACTAACGGAA+GGG | - | chr3_1:60361002-60361021 | Msa0365980:intron | 25.0% |
| ! | AACTTTAAACTCTCTCAATT+TGG | + | chr3_1:60361061-60361080 | None:intergenic | 25.0% |
| !! | ATTGAGAGAGTTTAAAGTTA+AGG | - | chr3_1:60361062-60361081 | Msa0365980:intron | 25.0% |
| !! | TTGAGAGAGTTTAAAGTTAA+GGG | - | chr3_1:60361063-60361082 | Msa0365980:intron | 25.0% |
| !!! | CTTATTTTTGCGTTTCATTT+TGG | + | chr3_1:60359827-60359846 | None:intergenic | 25.0% |
| ! | TGAAACGCAAAAATAAGTTA+AGG | - | chr3_1:60361093-60361112 | Msa0365980:intron | 25.0% |
| ! | GAAACGCAAAAATAAGTTAA+GGG | - | chr3_1:60361094-60361113 | Msa0365980:intron | 25.0% |
| ! | TTATGGGTAAATACATACTT+TGG | + | chr3_1:60361121-60361140 | None:intergenic | 25.0% |
| ! | ATGTATTTACCCATAAAAAC+AGG | - | chr3_1:60361125-60361144 | Msa0365980:intron | 25.0% |
| ! | TGTATTTACCCATAAAAACA+GGG | - | chr3_1:60361126-60361145 | Msa0365980:intron | 25.0% |
| !!! | AAATAAGACCCTGTTTTTAT+GGG | + | chr3_1:60361137-60361156 | None:intergenic | 25.0% |
| ! | TAAACAGTCTTTATTGCTTA+TGG | + | chr3_1:60361457-60361476 | None:intergenic | 25.0% |
| ! | AAAATGCAATCAAGTTCATT+TGG | + | chr3_1:60361541-60361560 | None:intergenic | 25.0% |
| !!! | ATTGCATTTTTTATCTGACA+AGG | - | chr3_1:60361551-60361570 | Msa0365980:intron | 25.0% |
| ! | AAGTGACATATAATATGAGA+GGG | + | chr3_1:60361593-60361612 | None:intergenic | 25.0% |
| ! | AAAGTGACATATAATATGAG+AGG | + | chr3_1:60361594-60361613 | None:intergenic | 25.0% |
| !!! | ATATGTCACTTTTGTAATGT+CGG | - | chr3_1:60361602-60361621 | Msa0365980:intron | 25.0% |
| ! | ATATCACTAGAATATCAAGA+AGG | - | chr3_1:60361638-60361657 | Msa0365980:intron | 25.0% |
| ! | AATAAGGGTGATATTGAAAA+TGG | + | chr3_1:60361673-60361692 | None:intergenic | 25.0% |
| !! | TTTCGTCTTGTTATATATAC+AGG | + | chr3_1:60361698-60361717 | None:intergenic | 25.0% |
| !!! | CTCTTTTTTTTACTACAGTA+AGG | + | chr3_1:60362055-60362074 | None:intergenic | 25.0% |
| ! | CTTACTGTAGTAAAAAAAAG+AGG | - | chr3_1:60362053-60362072 | Msa0365980:intron | 25.0% |
| AAAAAAAGGGAAAACATGGA+CGG | + | chr3_1:60358032-60358051 | None:intergenic | 30.0% | |
| GAAAATATTGTGATGGTTGA+AGG | + | chr3_1:60358138-60358157 | None:intergenic | 30.0% | |
| !! | ATTGTTTGTTGTTGTTGTAG+AGG | - | chr3_1:60358751-60358770 | Msa0365980:intron | 30.0% |
| !! | TTGTTTGTTGTTGTTGTAGA+GGG | - | chr3_1:60358752-60358771 | Msa0365980:intron | 30.0% |
| !!! | GTTTTTGAGACTTCTTTTGT+GGG | - | chr3_1:60358774-60358793 | Msa0365980:intron | 30.0% |
| TCAGCTTATTTCCATAAACT+TGG | + | chr3_1:60359073-60359092 | None:intergenic | 30.0% | |
| AGAAATACATCTTTGACTGA+AGG | + | chr3_1:60359330-60359349 | None:intergenic | 30.0% | |
| AAAGAATGATACTGATCAGT+TGG | - | chr3_1:60359479-60359498 | Msa0365980:intron | 30.0% | |
| TACTAAGGCTATAAAAACAG+GGG | - | chr3_1:60359780-60359799 | Msa0365980:intron | 30.0% | |
| TGTATATGTTGGATCTATGA+TGG | + | chr3_1:60360036-60360055 | None:intergenic | 30.0% | |
| GTTGCTAAGAAACAATAATC+TGG | + | chr3_1:60360163-60360182 | None:intergenic | 30.0% | |
| AGCCAAAAAACCAAATGAAA+AGG | - | chr3_1:60360332-60360351 | Msa0365980:intron | 30.0% | |
| !!! | TGCCTTTTCATTTGGTTTTT+TGG | + | chr3_1:60360337-60360356 | None:intergenic | 30.0% |
| AACCAAATGAAAAGGCAAAA+AGG | - | chr3_1:60360340-60360359 | Msa0365980:intron | 30.0% | |
| !!! | CTTTTCTTTAGTTGGTTTTC+TGG | + | chr3_1:60360366-60360385 | None:intergenic | 30.0% |
| ! | GTTTTCTTTTTGTAGGCTAT+AGG | + | chr3_1:60360394-60360413 | None:intergenic | 30.0% |
| !!! | TTTTTTCTGTTTTCTAGTGC+AGG | + | chr3_1:60360419-60360438 | None:intergenic | 30.0% |
| TAGAATAATGAAGAGAAGAG+AGG | + | chr3_1:60360483-60360502 | None:intergenic | 30.0% | |
| AAACAAATAAGAAAGGAGAG+GGG | + | chr3_1:60360695-60360714 | None:intergenic | 30.0% | |
| ATAGAGAAGAAGATGATTCA+TGG | - | chr3_1:60360805-60360824 | Msa0365980:CDS | 30.0% | |
| !!! | ATGATTCATGGTTTTGATTC+TGG | - | chr3_1:60360817-60360836 | Msa0365980:CDS | 30.0% |
| !!! | TGATTCATGGTTTTGATTCT+GGG | - | chr3_1:60360818-60360837 | Msa0365980:CDS | 30.0% |
| !!! | CAAATAAGACCCTGTTTTTA+TGG | + | chr3_1:60361138-60361157 | None:intergenic | 30.0% |
| !!! | ATTTTAGTTCTCCAAGTTCA+AGG | - | chr3_1:60361192-60361211 | Msa0365980:intron | 30.0% |
| TTGACCCAAAAATCATTAAG+AGG | - | chr3_1:60361276-60361295 | Msa0365980:intron | 30.0% | |
| !! | TTTTATAGTTTGTGCACTCA+AGG | - | chr3_1:60361340-60361359 | Msa0365980:intron | 30.0% |
| ATCATCAGCATTAGTACAAA+TGG | + | chr3_1:60361420-60361439 | None:intergenic | 30.0% | |
| GCAATAAAGACTGTTTATAC+TGG | - | chr3_1:60361460-60361479 | Msa0365980:intron | 30.0% | |
| ATCAAGTTCATTTGGTACAT+AGG | + | chr3_1:60361533-60361552 | None:intergenic | 30.0% | |
| TTGAAATTTGTCTGGATAGA+TGG | - | chr3_1:60361823-60361842 | Msa0365980:intron | 30.0% | |
| TACAAGTTGTGAAAATGTAC+GGG | + | chr3_1:60361978-60361997 | None:intergenic | 30.0% | |
| CTACAAGTTGTGAAAATGTA+CGG | + | chr3_1:60361979-60361998 | None:intergenic | 30.0% | |
| ! | TTTTTGTTACACACGAAAGT+TGG | + | chr3_1:60362179-60362198 | None:intergenic | 30.0% |
| TGCAGAAAAGAAAACACAGA+AGG | + | chr3_1:60357963-60357982 | None:intergenic | 35.0% | |
| TTGTTTGATGAGAATGAGAG+AGG | + | chr3_1:60358338-60358357 | None:intergenic | 35.0% | |
| TCTCTCATTCTCATCAAACA+AGG | - | chr3_1:60358337-60358356 | Msa0365980:CDS | 35.0% | |
| !!! | GGTTTTTGAGACTTCTTTTG+TGG | - | chr3_1:60358773-60358792 | Msa0365980:intron | 35.0% |
| ATTAAGCAGTTCATCCAAAC+AGG | + | chr3_1:60358940-60358959 | None:intergenic | 35.0% | |
| ACACCGTTTGAAAGAGTTTA+TGG | + | chr3_1:60359127-60359146 | None:intergenic | 35.0% | |
| AATGTTAAAGTGTGCGATAC+AGG | + | chr3_1:60359291-60359310 | None:intergenic | 35.0% | |
| !! | TTTCTAGAATTCGGATCATG+TGG | - | chr3_1:60359345-60359364 | Msa0365980:intron | 35.0% |
| CGCAATTACATCACCAATTT+GGG | + | chr3_1:60359403-60359422 | None:intergenic | 35.0% | |
| TCGCAATTACATCACCAATT+TGG | + | chr3_1:60359404-60359423 | None:intergenic | 35.0% | |
| GTAATTGCGAAGTTACATGA+TGG | - | chr3_1:60359414-60359433 | Msa0365980:intron | 35.0% | |
| ! | CTGTGATGTGTATTTTGTGT+AGG | - | chr3_1:60359594-60359613 | Msa0365980:intron | 35.0% |
| !! | GTGTAGGTTCTTATTGACTT+CGG | - | chr3_1:60359610-60359629 | Msa0365980:intron | 35.0% |
| TGAAGAATGCATCGAAACAA+GGG | + | chr3_1:60359698-60359717 | None:intergenic | 35.0% | |
| ATGAAGAATGCATCGAAACA+AGG | + | chr3_1:60359699-60359718 | None:intergenic | 35.0% | |
| CTATTGGGAAAATGAGAAGT+TGG | + | chr3_1:60359738-60359757 | None:intergenic | 35.0% | |
| GTAAACGGAGAGTTACTTAA+GGG | + | chr3_1:60361034-60361053 | None:intergenic | 35.0% | |
| ! | AGAGATGGATTTGATGTGTT+TGG | + | chr3_1:60360198-60360217 | None:intergenic | 35.0% |
| AGAGGGAAAATAAGAAGAGA+TGG | + | chr3_1:60360213-60360232 | None:intergenic | 35.0% | |
| GGGAAAAAAGAAGAGAAGAT+AGG | + | chr3_1:60360251-60360270 | None:intergenic | 35.0% | |
| ! | GATTCTTTTCGTAGTTCAGT+AGG | + | chr3_1:60360289-60360308 | None:intergenic | 35.0% |
| ! | CTTTTTGTAGGCTATAGGAA+GGG | + | chr3_1:60360389-60360408 | None:intergenic | 35.0% |
| ! | TCTTTTTGTAGGCTATAGGA+AGG | + | chr3_1:60360390-60360409 | None:intergenic | 35.0% |
| CTATTCTCTTCTTTCTCTTC+TGG | - | chr3_1:60360500-60360519 | Msa0365980:CDS | 35.0% | |
| ! | CAAGCAGATCTATGGATTTT+TGG | + | chr3_1:60360546-60360565 | None:intergenic | 35.0% |
| CAAAAATCCATAGATCTGCT+TGG | - | chr3_1:60360544-60360563 | Msa0365980:CDS | 35.0% | |
| GTAAACGGAGAGTTACTTAA+GGG | - | chr3_1:60361034-60361053 | Msa0365980:intron | 35.0% | |
| !! | AGGGTCTTATTTGTCTGTTA+TGG | - | chr3_1:60361145-60361164 | Msa0365980:intron | 35.0% |
| AAAGTGTAAGACCTTGAACT+TGG | + | chr3_1:60361206-60361225 | None:intergenic | 35.0% | |
| TCTACACAAAAGTTTAGGGA+AGG | + | chr3_1:60361229-60361248 | None:intergenic | 35.0% | |
| ! | TTCCCTAAACTTTTGTGTAG+AGG | - | chr3_1:60361228-60361247 | Msa0365980:intron | 35.0% |
| AGCCTCTACACAAAAGTTTA+GGG | + | chr3_1:60361233-60361252 | None:intergenic | 35.0% | |
| TAGCCTCTACACAAAAGTTT+AGG | + | chr3_1:60361234-60361253 | None:intergenic | 35.0% | |
| ! | GCGTAACTGTTGCTTAATAA+TGG | + | chr3_1:60361507-60361526 | None:intergenic | 35.0% |
| AGTTCATTTGGTACATAGGA+AGG | + | chr3_1:60361529-60361548 | None:intergenic | 35.0% | |
| GACATATAATATGAGAGGGA+TGG | + | chr3_1:60361589-60361608 | None:intergenic | 35.0% | |
| !!! | ACCACTGTTTTGATGATTTG+CGG | + | chr3_1:60361868-60361887 | None:intergenic | 35.0% |
| ACAAGTTGTGAAAATGTACG+GGG | + | chr3_1:60361977-60361996 | None:intergenic | 35.0% | |
| ACTCAATTGCAACAGTGAGA+AGG | + | chr3_1:60358074-60358093 | None:intergenic | 40.0% | |
| !! | GTGATGGTTGAAGGTTTTGA+GGG | + | chr3_1:60358129-60358148 | None:intergenic | 40.0% |
| ! | TGTGATGGTTGAAGGTTTTG+AGG | + | chr3_1:60358130-60358149 | None:intergenic | 40.0% |
| ATTGTCCAATAACGGTACTG+TGG | - | chr3_1:60358614-60358633 | Msa0365980:intron | 40.0% | |
| ! | AGACTTCTTTTGTGGGAAGA+AGG | - | chr3_1:60358781-60358800 | Msa0365980:intron | 40.0% |
| GTCAACTTAGCATCCAAAGT+CGG | + | chr3_1:60358846-60358865 | None:intergenic | 40.0% | |
| AGATGAAGTTAGGTCCTGTT+TGG | - | chr3_1:60358923-60358942 | Msa0365980:intron | 40.0% | |
| ATTGCGAAGTTACATGATGG+TGG | - | chr3_1:60359417-60359436 | Msa0365980:intron | 40.0% | |
| GGTGAGTTCATTCATCTCTT+AGG | - | chr3_1:60359500-60359519 | Msa0365980:intron | 40.0% | |
| ! | AAATCGACGGCTTTATCTTC+TGG | + | chr3_1:60359658-60359677 | None:intergenic | 40.0% |
| GTTTCGATGCATTCTTCATG+TGG | - | chr3_1:60359700-60359719 | Msa0365980:intron | 40.0% | |
| ! | GCATTCTTCATGTGGTAATG+TGG | - | chr3_1:60359708-60359727 | Msa0365980:intron | 40.0% |
| ACAGGGGTAAATACAGACTT+TGG | - | chr3_1:60359796-60359815 | Msa0365980:intron | 40.0% | |
| GGTAAACGGAGAGTTACTTA+AGG | + | chr3_1:60361033-60361052 | None:intergenic | 40.0% | |
| TAACTCTCCGTTTACCAAAG+TGG | - | chr3_1:60359888-60359907 | Msa0365980:intron | 40.0% | |
| ! | TTGGCTGTGTTTGCTTTGTT+TGG | + | chr3_1:60360318-60360337 | None:intergenic | 40.0% |
| ! | GGCCTTTTTGCCTTTTCATT+TGG | + | chr3_1:60360345-60360364 | None:intergenic | 40.0% |
| ! | AGGAAGGGCTTTTCTTTAGT+TGG | + | chr3_1:60360374-60360393 | None:intergenic | 40.0% |
| ! | GCAGGTGGTTTTCTTTTTGT+AGG | + | chr3_1:60360401-60360420 | None:intergenic | 40.0% |
| !! | TTTCTGTTTTCTAGTGCAGG+TGG | + | chr3_1:60360416-60360435 | None:intergenic | 40.0% |
| TGGGTATGAATGAAAAGCAG+AGG | - | chr3_1:60360760-60360779 | Msa0365980:CDS | 40.0% | |
| GTATGAATGAAAAGCAGAGG+TGG | - | chr3_1:60360763-60360782 | Msa0365980:CDS | 40.0% | |
| GGTGGATCTAAACATAGAAG+AGG | - | chr3_1:60360781-60360800 | Msa0365980:CDS | 40.0% | |
| TAACTCTCCGTTTACCAAAG+TGG | + | chr3_1:60359888-60359907 | None:intergenic | 40.0% | |
| GGTAAACGGAGAGTTACTTA+AGG | - | chr3_1:60361033-60361052 | Msa0365980:intron | 40.0% | |
| ACCGCAAATCATCAAAACAG+TGG | - | chr3_1:60361864-60361883 | Msa0365980:CDS | 40.0% | |
| ACAATGAACAAGCTTGCAGA+CGG | - | chr3_1:60361893-60361912 | Msa0365980:CDS | 40.0% | |
| AACTCAGAATCATCCAACCA+TGG | + | chr3_1:60362026-60362045 | None:intergenic | 40.0% | |
| GACAATCTCACCGTTTATGG+CGG | + | chr3_1:60358010-60358029 | None:intergenic | 45.0% | |
| ACGGACAATCTCACCGTTTA+TGG | + | chr3_1:60358013-60358032 | None:intergenic | 45.0% | |
| CAATGCCACAGTACCGTTAT+TGG | + | chr3_1:60358622-60358641 | None:intergenic | 45.0% | |
| GAAGTACAGACATCCGACTT+TGG | - | chr3_1:60358830-60358849 | Msa0365980:intron | 45.0% | |
| GACACTCAAGCGCTTAAATG+CGG | - | chr3_1:60358863-60358882 | Msa0365980:intron | 45.0% | |
| TTGTTCCGCCAATTGATTGC+TGG | - | chr3_1:60359194-60359213 | Msa0365980:intron | 45.0% | |
| CTACTCCAGCAATCAATTGG+CGG | + | chr3_1:60359202-60359221 | None:intergenic | 45.0% | |
| CTCCTACTCCAGCAATCAAT+TGG | + | chr3_1:60359205-60359224 | None:intergenic | 45.0% | |
| CAATTGATTGCTGGAGTAGG+AGG | - | chr3_1:60359203-60359222 | Msa0365980:intron | 45.0% | |
| ACAACAAAAGCAAGGCGACT+CGG | - | chr3_1:60359234-60359253 | Msa0365980:intron | 45.0% | |
| GGAAAGATTGCGTCCCAAAT+TGG | - | chr3_1:60359387-60359406 | Msa0365980:intron | 45.0% | |
| !! | CATGATGGTGGTCTTGTTCA+TGG | - | chr3_1:60359429-60359448 | Msa0365980:intron | 45.0% |
| GAAGGGACCACTTTGGTAAA+CGG | + | chr3_1:60361019-60361038 | None:intergenic | 45.0% | |
| ACTAACAGAAGGGACCACTT+TGG | + | chr3_1:60359905-60359924 | None:intergenic | 45.0% | |
| GGAAGCAGAGATGATGAAGA+GGG | + | chr3_1:60360230-60360249 | None:intergenic | 45.0% | |
| AGGAAGCAGAGATGATGAAG+AGG | + | chr3_1:60360231-60360250 | None:intergenic | 45.0% | |
| !! | TGTTTGCTTTGTTTGGCTGC+TGG | + | chr3_1:60360311-60360330 | None:intergenic | 45.0% |
| ! | GGTTTTTCATTCTGCTGCAG+AGG | + | chr3_1:60360456-60360475 | None:intergenic | 45.0% |
| ! | AATGAAGAGAAGAGAGGTGC+TGG | + | chr3_1:60360477-60360496 | None:intergenic | 45.0% |
| TCTCTCACCAAGCAGATCTA+TGG | + | chr3_1:60360554-60360573 | None:intergenic | 45.0% | |
| ACATGAGACAACTGCGTTTC+CGG | - | chr3_1:60360581-60360600 | Msa0365980:intron | 45.0% | |
| CAAATAAGAAAGGAGAGGGG+AGG | + | chr3_1:60360692-60360711 | None:intergenic | 45.0% | |
| GAAGGGACCACTTTGGTAAA+CGG | - | chr3_1:60361019-60361038 | Msa0365980:intron | 45.0% | |
| ! | GTCTGCAAGCTTGTTCATTG+TGG | + | chr3_1:60361894-60361913 | None:intergenic | 45.0% |
| CAACTTGTAGTGCGACAAAG+AGG | - | chr3_1:60361989-60362008 | Msa0365980:intron | 45.0% | |
| AATCTCACCGTTTATGGCGG+CGG | + | chr3_1:60358007-60358026 | None:intergenic | 50.0% | |
| GGGAAGAAGGTCTGTTGTGA+AGG | - | chr3_1:60358794-60358813 | Msa0365980:intron | 50.0% | |
| CGCCAATTGATTGCTGGAGT+AGG | - | chr3_1:60359200-60359219 | Msa0365980:intron | 50.0% | |
| CGAGGTGCACAACAAAAGCA+AGG | - | chr3_1:60359226-60359245 | Msa0365980:intron | 50.0% | |
| TACTCCTGTGCTGTATGCTG+TGG | - | chr3_1:60359263-60359282 | Msa0365980:intron | 50.0% | |
| ! | TTTGGGACGCAATCTTTCCC+AGG | + | chr3_1:60359386-60359405 | None:intergenic | 50.0% |
| GTAGGCAGCGATGATGAAGA+GGG | + | chr3_1:60360271-60360290 | None:intergenic | 50.0% | |
| AGTAGGCAGCGATGATGAAG+AGG | + | chr3_1:60360272-60360291 | None:intergenic | 50.0% | |
| TTCTGCTGCAGAGGCTTCTA+TGG | + | chr3_1:60360447-60360466 | None:intergenic | 50.0% | |
| ! | TCTGCTTGGTGAGAGAGAGT+CGG | - | chr3_1:60360558-60360577 | Msa0365980:CDS | 50.0% |
| ACTGCTGCTGTCAACCTTGA+AGG | + | chr3_1:60360660-60360679 | None:intergenic | 50.0% | |
| TTCAAGGTTGACAGCAGCAG+TGG | - | chr3_1:60360659-60360678 | Msa0365980:intron | 50.0% | |
| ACTAACGGAAGGGACCACTT+TGG | - | chr3_1:60361012-60361031 | Msa0365980:intron | 50.0% | |
| TGCGACAAAGAGGACGAAAG+AGG | - | chr3_1:60361999-60362018 | Msa0365980:intron | 50.0% | |
| AAGAGGACGAAAGAGGACCA+TGG | - | chr3_1:60362006-60362025 | Msa0365980:intron | 50.0% | |
| GGATCCACAGCATACAGCAC+AGG | + | chr3_1:60359270-60359289 | None:intergenic | 55.0% | |
| !! | TGGTGTCAATGAAGAGCGCC+TGG | - | chr3_1:60359365-60359384 | Msa0365980:intron | 55.0% |
| !! | GGTGTCAATGAAGAGCGCCT+GGG | - | chr3_1:60359366-60359385 | Msa0365980:intron | 55.0% |
| CTGCAGAGGCTTCTATGGCT+CGG | + | chr3_1:60360442-60360461 | None:intergenic | 55.0% | |
| ACTGCGTTTCCGGTTGACAG+AGG | - | chr3_1:60360591-60360610 | Msa0365980:intron | 55.0% | |
| GGACGAAAGAGGACCATGGT+TGG | - | chr3_1:60362010-60362029 | Msa0365980:intron | 55.0% | |
| TCGTCGTCCGCCGCCATAAA+CGG | - | chr3_1:60357997-60358016 | Msa0365980:three_prime_UTR | 60.0% | |
| GATTGCTGGAGTAGGAGGCG+AGG | - | chr3_1:60359208-60359227 | Msa0365980:intron | 60.0% | |
| CCGTGAACGCCTCTGTCAAC+CGG | + | chr3_1:60360603-60360622 | None:intergenic | 60.0% | |
| !! | CCGGTTGACAGAGGCGTTCA+CGG | - | chr3_1:60360600-60360619 | Msa0365980:intron | 60.0% |
| !! | GTTGACAGAGGCGTTCACGG+CGG | - | chr3_1:60360603-60360622 | Msa0365980:intron | 60.0% |
| GCGGTTGACAGCGACGTTCA+CGG | - | chr3_1:60360631-60360650 | Msa0365980:intron | 60.0% | |
| GTTGACAGCGACGTTCACGG+CGG | - | chr3_1:60360634-60360653 | Msa0365980:intron | 60.0% | |
| GACGTTCACGGCGGCCTTCA+AGG | - | chr3_1:60360643-60360662 | Msa0365980:intron | 65.0% | |
| GGCGTTCACGGCGGCGTTTG+CGG | - | chr3_1:60360612-60360631 | Msa0365980:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 60357960 | 60362247 | 60357960 | ID=Msa0365980;Name=Msa0365980 |
| chr3_1 | mRNA | 60357960 | 60362247 | 60357960 | ID=Msa0365980-mRNA-1;Parent=Msa0365980;Name=Msa0365980-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.83|0.57|1|0.83|0.85|7|211|228 |
| chr3_1 | exon | 60357960 | 60358208 | 60357960 | ID=Msa0365980-mRNA-1:exon:11644;Parent=Msa0365980-mRNA-1 |
| chr3_1 | exon | 60358293 | 60358365 | 60358293 | ID=Msa0365980-mRNA-1:exon:11643;Parent=Msa0365980-mRNA-1 |
| chr3_1 | exon | 60360478 | 60360591 | 60360478 | ID=Msa0365980-mRNA-1:exon:11642;Parent=Msa0365980-mRNA-1 |
| chr3_1 | exon | 60360707 | 60360959 | 60360707 | ID=Msa0365980-mRNA-1:exon:11641;Parent=Msa0365980-mRNA-1 |
| chr3_1 | exon | 60361375 | 60361436 | 60361375 | ID=Msa0365980-mRNA-1:exon:11640;Parent=Msa0365980-mRNA-1 |
| chr3_1 | exon | 60361838 | 60361925 | 60361838 | ID=Msa0365980-mRNA-1:exon:11639;Parent=Msa0365980-mRNA-1 |
| chr3_1 | exon | 60362189 | 60362247 | 60362189 | ID=Msa0365980-mRNA-1:exon:11638;Parent=Msa0365980-mRNA-1 |
| chr3_1 | CDS | 60362189 | 60362247 | 60362189 | ID=Msa0365980-mRNA-1:cds;Parent=Msa0365980-mRNA-1 |
| chr3_1 | CDS | 60361838 | 60361925 | 60361838 | ID=Msa0365980-mRNA-1:cds;Parent=Msa0365980-mRNA-1 |
| chr3_1 | CDS | 60361375 | 60361436 | 60361375 | ID=Msa0365980-mRNA-1:cds;Parent=Msa0365980-mRNA-1 |
| chr3_1 | CDS | 60360707 | 60360959 | 60360707 | ID=Msa0365980-mRNA-1:cds;Parent=Msa0365980-mRNA-1 |
| chr3_1 | CDS | 60360478 | 60360591 | 60360478 | ID=Msa0365980-mRNA-1:cds;Parent=Msa0365980-mRNA-1 |
| chr3_1 | CDS | 60358293 | 60358365 | 60358293 | ID=Msa0365980-mRNA-1:cds;Parent=Msa0365980-mRNA-1 |
| chr3_1 | CDS | 60358171 | 60358208 | 60358171 | ID=Msa0365980-mRNA-1:cds;Parent=Msa0365980-mRNA-1 |
| chr3_1 | three_prime_UTR | 60357960 | 60358170 | 60357960 | ID=Msa0365980-mRNA-1:three_prime_utr;Parent=Msa0365980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
