AlfalfaGEDB | Msa0366390

M. sativa cultivar zhongmu-4 / Msa0366390

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0366390	XP_013460436.1	93.665	221	8	1	1	215	1	221	3.25e-149	424

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0366390	sp\|Q9FJK3\|AGL80_ARATH	52.000	175	82	1	1	173	1	175	4.17e-53	176

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0366390	A0A072UXE2	93.665	221	8	1	1	215	1	221	1.55e-149	424

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TFs/TRs:

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Gene ID	Type	Classification
Msa0366390	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0366390	MtrunA17_Chr3g0107381	93.665	221	8	1	1	215	1	221	2.99e-153	424
Msa0366390	MtrunA17_Chr3g0110131	54.202	238	85	4	1	215	1	237	1.33e-74	225
Msa0366390	MtrunA17_Chr8g0351751	48.387	248	90	8	1	215	1	243	1.28e-62	195
Msa0366390	MtrunA17_Chr3g0107461	53.896	154	70	1	1	153	1	154	1.33e-55	174
Msa0366390	MtrunA17_Chr4g0014321	51.299	154	74	1	1	153	1	154	3.36e-53	170
Msa0366390	MtrunA17_Chr4g0013041	50.323	155	74	2	1	154	1	153	2.56e-51	165
Msa0366390	MtrunA17_Chr3g0107331	48.667	150	77	0	3	152	2	151	1.58e-50	161
Msa0366390	MtrunA17_Chr4g0014031	53.247	154	71	1	1	153	1	154	5.33e-50	162
Msa0366390	MtrunA17_Chr4g0014131	53.896	154	70	1	1	153	1	154	2.22e-48	158
Msa0366390	MtrunA17_Chr4g0014121	52.866	157	73	1	1	156	29	185	2.43e-48	156

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0366390	AT5G48670.1	52.000	175	82	1	1	173	1	175	4.24e-54	176
Msa0366390	AT3G05860.2	39.801	201	113	3	1	195	1	199	2.37e-40	137
Msa0366390	AT3G05860.1	40.838	191	105	3	1	185	1	189	2.43e-39	136
Msa0366390	AT3G05860.3	41.758	182	92	4	1	176	1	174	7.40e-39	134
Msa0366390	AT1G65300.1	41.060	151	89	0	3	153	2	152	1.67e-37	132
Msa0366390	AT5G26650.1	34.597	211	127	4	4	203	2	212	1.22e-35	129
Msa0366390	AT5G27810.1	60.215	93	37	0	29	121	1	93	1.84e-35	122
Msa0366390	AT1G65330.1	39.735	151	91	0	3	153	2	152	9.02e-35	125
Msa0366390	AT1G31630.1	38.562	153	91	3	3	154	2	152	4.09e-34	124
Msa0366390	AT5G27960.1	33.175	211	130	4	4	203	2	212	2.48e-33	122

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Find 60 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTGCTGTCAAGGTTC+CGG	0.507965	3_1:-61301912	Msa0366390:CDS
AAATGTGAGTGGAGGGGAGC+AGG	0.400231	3_1:-61301605	Msa0366390:CDS
AACAAAGGAATGACAACAAA+AGG	0.420798	3_1:-61301798	Msa0366390:CDS
AACCAAGCTGGAAATGTGAG+TGG	0.641568	3_1:-61301616	Msa0366390:CDS
AAGAACAGCTGAAGAAACAA+AGG	0.602104	3_1:-61301813	Msa0366390:CDS
AAGAGAGTTTCTTGAAGCAA+AGG	0.517056	3_1:-61301849	Msa0366390:CDS
AAGCTGGAAATGTGAGTGGA+GGG	0.564199	3_1:-61301612	Msa0366390:CDS
AAGGAATGACAACAAAAGGA+AGG	0.606288	3_1:-61301794	Msa0366390:CDS
AATGGTAACATTGTACCACA+TGG	0.641540	3_1:-61301493	Msa0366390:CDS
AATGTGAGTGGAGGGGAGCA+GGG	0.435248	3_1:-61301604	Msa0366390:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGAAAGAAATGAGTAAGAA+GGG	+	chr3_1:61301331-61301350	None:intergenic	30.0%
AGAGAAAGAAATGAGTAAGA+AGG	+	chr3_1:61301332-61301351	None:intergenic	30.0%
ATGCAAGATTGATATAGACA+TGG	+	chr3_1:61301482-61301501	None:intergenic	30.0%
GATCGTAAATTGAATCAATG+GGG	-	chr3_1:61301639-61301658	Msa0366390:CDS	30.0%
ACTTTACTTTACGATGTTGT+GGG	+	chr3_1:61301693-61301712	None:intergenic	30.0%
AACTTTACTTTACGATGTTG+TGG	+	chr3_1:61301694-61301713	None:intergenic	30.0%
ATTTAACATGTTTGTCCCTT+TGG	-	chr3_1:61301909-61301928	Msa0366390:CDS	30.0%
AACAAAGGAATGACAACAAA+AGG	-	chr3_1:61302372-61302391	Msa0366390:intron	30.0%
ATGATCTCAATGATATCTCA+TGG	-	chr3_1:61302462-61302481	Msa0366390:intron	30.0%
GATGTGTTACCATTTGAAAA+TGG	-	chr3_1:61302659-61302678	Msa0366390:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	61301320	61302872	61301320	ID=Msa0366390;Name=Msa0366390
chr3_1	mRNA	61301320	61302872	61301320	ID=Msa0366390-mRNA-1;Parent=Msa0366390;Name=Msa0366390-mRNA-1;_AED=0.01;_eAED=0.01;_QI=47\|1\|1\|1\|1\|1\|2\|160\|215
chr3_1	exon	61301320	61302048	61301320	ID=Msa0366390-mRNA-1:exon:11872;Parent=Msa0366390-mRNA-1
chr3_1	exon	61302747	61302872	61302747	ID=Msa0366390-mRNA-1:exon:11871;Parent=Msa0366390-mRNA-1
chr3_1	five_prime_UTR	61302826	61302872	61302826	ID=Msa0366390-mRNA-1:five_prime_utr;Parent=Msa0366390-mRNA-1
chr3_1	CDS	61302747	61302825	61302747	ID=Msa0366390-mRNA-1:cds;Parent=Msa0366390-mRNA-1
chr3_1	CDS	61301480	61302048	61301480	ID=Msa0366390-mRNA-1:cds;Parent=Msa0366390-mRNA-1
chr3_1	three_prime_UTR	61301320	61301479	61301320	ID=Msa0366390-mRNA-1:three_prime_utr;Parent=Msa0366390-mRNA-1

Gene Sequence

>Msa0366390

ATGACTAGGAAGAAGGTGAGCCTTGCCTACATCACCAGTGACACAAAGAGGAGGGGAACATTCAAGAAAAGAAAAAATGGTTTGATCAAGAAGATTGATGAAATCAGCACGCTCTGTGGGATCGAAGCGTGTGCTATCATCTTTGATCAAAACGATCCTCAACCAGAGGTTTGGCCTTCGCCATGGGGAGTGCAAAAGGTGCTGTCAAGGTTCCGGAGATTGCCCGAACTTGAGCAAAGCAAAAAAATGTTCAATCAAGAGAGTTTCTTGAAGCAAAGGATCCAAAAAGCTCAAGAACAGCTGAAGAAACAAAGGAATGACAACAAAAGGAAGGAAATGACTCATCTGATGTTTCAATGCCTTAATGCTGGTCAGATTTTTGACCATGTTGGCATGGATGATCTCAATGATATCTCATGGTTGATTGATCAGAACTTGAAACAGATCGATAGGAAACTCGTTCAGTCTCAAGCTGAAGAGGTTGTTCAAAACCAAGCTGGAAATGTGAGTGGAGGGGAGCAGGGAATGGAGAACATTGCTGATCCAATGCAAAGGCAGCATTGGCCAATGGATTTCACCAACAACAACATTGGTGATGTGTTACCATTTGAAAATGGTAACATTGTACCACATGGTTTCTGGCCTTGA

Protein sequence

>Msa0366390

MTRKKVSLAYITSDTKRRGTFKKRKNGLIKKIDEISTLCGIEACAIIFDQNDPQPEVWPSPWGVQKVLSRFRRLPELEQSKKMFNQESFLKQRIQKAQEQLKKQRNDNKRKEMTHLMFQCLNAGQIFDHVGMDDLNDISWLIDQNLKQIDRKLVQSQAEEVVQNQAGNVSGGEQGMENIADPMQRQHWPMDFTNNNIGDVLPFENGNIVPHGFWP*