Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366410 | XP_039689000.1 | 92.162 | 740 | 48 | 1 | 31 | 760 | 49 | 788 | 0.0 | 1424 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366410 | sp|Q9SZL8|FRS5_ARATH | 34.740 | 616 | 371 | 9 | 66 | 661 | 70 | 674 | 4.13e-117 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366410 | A2Q1A1 | 56.960 | 783 | 295 | 9 | 16 | 759 | 21 | 800 | 0.0 | 889 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0366410 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366410 | MtrunA17_Chr5g0448761 | 35.233 | 579 | 345 | 11 | 66 | 625 | 57 | 624 | 1.71e-109 | 351 |
| Msa0366410 | MtrunA17_Chr1g0202341 | 33.884 | 605 | 367 | 11 | 40 | 627 | 22 | 610 | 3.42e-104 | 334 |
| Msa0366410 | MtrunA17_Chr2g0296781 | 31.825 | 663 | 412 | 14 | 75 | 717 | 3 | 645 | 5.63e-101 | 327 |
| Msa0366410 | MtrunA17_Chr2g0287651 | 30.327 | 643 | 410 | 12 | 75 | 696 | 81 | 706 | 2.87e-97 | 321 |
| Msa0366410 | MtrunA17_Chr8g0363841 | 32.446 | 601 | 377 | 11 | 58 | 642 | 5 | 592 | 1.27e-94 | 309 |
| Msa0366410 | MtrunA17_Chr5g0441581 | 31.239 | 589 | 360 | 12 | 60 | 627 | 20 | 584 | 1.64e-93 | 306 |
| Msa0366410 | MtrunA17_Chr6g0477261 | 33.764 | 542 | 330 | 11 | 196 | 717 | 2 | 534 | 1.71e-93 | 305 |
| Msa0366410 | MtrunA17_Chr2g0324011 | 30.033 | 606 | 383 | 11 | 60 | 644 | 1 | 586 | 6.44e-85 | 281 |
| Msa0366410 | MtrunA17_Chr3g0082121 | 30.460 | 696 | 422 | 19 | 69 | 741 | 43 | 699 | 6.47e-85 | 283 |
| Msa0366410 | MtrunA17_Chr5g0440451 | 30.151 | 597 | 357 | 12 | 68 | 632 | 42 | 610 | 2.84e-84 | 287 |
| Msa0366410 | MtrunA17_Chr6g0458391 | 30.998 | 571 | 349 | 12 | 69 | 625 | 225 | 764 | 3.03e-84 | 283 |
| Msa0366410 | MtrunA17_Chr1g0196541 | 29.927 | 685 | 429 | 18 | 74 | 736 | 2 | 657 | 1.24e-83 | 281 |
| Msa0366410 | MtrunA17_Chr1g0203051 | 31.492 | 543 | 344 | 9 | 85 | 614 | 95 | 622 | 4.15e-83 | 277 |
| Msa0366410 | MtrunA17_Chr1g0207551 | 31.369 | 577 | 364 | 12 | 64 | 625 | 29 | 588 | 9.98e-82 | 278 |
| Msa0366410 | MtrunA17_Chr5g0448511 | 34.458 | 415 | 258 | 5 | 249 | 652 | 13 | 424 | 1.64e-81 | 270 |
| Msa0366410 | MtrunA17_Chr2g0329031 | 28.012 | 689 | 436 | 19 | 85 | 744 | 30 | 687 | 9.72e-81 | 273 |
| Msa0366410 | MtrunA17_Chr3g0080351 | 28.268 | 612 | 383 | 12 | 64 | 655 | 71 | 646 | 1.02e-79 | 273 |
| Msa0366410 | MtrunA17_Chr1g0198761 | 27.901 | 724 | 447 | 20 | 72 | 757 | 50 | 736 | 2.21e-79 | 270 |
| Msa0366410 | MtrunA17_Chr2g0287061 | 30.860 | 593 | 323 | 13 | 67 | 635 | 181 | 710 | 2.85e-79 | 271 |
| Msa0366410 | MtrunA17_Chr1g0203721 | 27.116 | 638 | 427 | 11 | 71 | 688 | 65 | 684 | 6.30e-78 | 268 |
| Msa0366410 | MtrunA17_Chr3g0118611 | 34.177 | 395 | 243 | 5 | 241 | 625 | 113 | 500 | 1.12e-75 | 260 |
| Msa0366410 | MtrunA17_Chr2g0291581 | 29.503 | 583 | 366 | 11 | 69 | 632 | 71 | 627 | 6.76e-75 | 256 |
| Msa0366410 | MtrunA17_Chr2g0276841 | 26.452 | 620 | 412 | 14 | 69 | 666 | 70 | 667 | 5.98e-63 | 223 |
| Msa0366410 | MtrunA17_Chr2g0294841 | 26.821 | 604 | 392 | 14 | 46 | 621 | 22 | 603 | 2.32e-60 | 217 |
| Msa0366410 | MtrunA17_Chr2g0290391 | 24.850 | 668 | 457 | 16 | 46 | 685 | 28 | 678 | 4.06e-59 | 213 |
| Msa0366410 | MtrunA17_Chr5g0431001 | 30.722 | 485 | 303 | 14 | 20 | 487 | 15 | 483 | 8.51e-59 | 207 |
| Msa0366410 | MtrunA17_Chr2g0291591 | 26.939 | 490 | 326 | 9 | 64 | 538 | 59 | 531 | 3.70e-57 | 204 |
| Msa0366410 | MtrunA17_Chr1g0164591 | 33.007 | 306 | 197 | 3 | 161 | 466 | 10 | 307 | 1.03e-53 | 188 |
| Msa0366410 | MtrunA17_Chr7g0258861 | 35.052 | 291 | 174 | 5 | 68 | 352 | 9 | 290 | 4.13e-46 | 167 |
| Msa0366410 | MtrunA17_Chr2g0308841 | 26.724 | 232 | 144 | 5 | 411 | 625 | 4 | 226 | 9.04e-22 | 95.9 |
| Msa0366410 | MtrunA17_Chr4g0033611 | 36.508 | 126 | 68 | 4 | 53 | 176 | 61 | 176 | 1.33e-15 | 77.4 |
| Msa0366410 | MtrunA17_Chr1g0149131 | 30.909 | 110 | 76 | 0 | 353 | 462 | 1 | 110 | 8.03e-14 | 68.9 |
| Msa0366410 | MtrunA17_Chr2g0329421 | 33.824 | 136 | 79 | 3 | 43 | 176 | 1 | 127 | 3.41e-13 | 69.3 |
| Msa0366410 | MtrunA17_Chr7g0233911 | 35.652 | 115 | 61 | 4 | 68 | 178 | 33 | 138 | 2.46e-11 | 63.9 |
| Msa0366410 | MtrunA17_Chr2g0329361 | 32.308 | 130 | 82 | 2 | 65 | 193 | 57 | 181 | 2.51e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366410 | AT4G38180.1 | 34.740 | 616 | 371 | 9 | 66 | 661 | 70 | 674 | 4.20e-118 | 374 |
| Msa0366410 | AT4G15090.1 | 28.591 | 717 | 473 | 13 | 64 | 758 | 46 | 745 | 8.60e-89 | 297 |
| Msa0366410 | AT4G15090.5 | 28.591 | 717 | 473 | 13 | 64 | 758 | 46 | 745 | 8.60e-89 | 297 |
| Msa0366410 | AT4G15090.3 | 28.591 | 717 | 473 | 13 | 64 | 758 | 46 | 745 | 8.60e-89 | 297 |
| Msa0366410 | AT4G15090.2 | 28.591 | 717 | 473 | 13 | 64 | 758 | 46 | 745 | 8.60e-89 | 297 |
| Msa0366410 | AT4G15090.4 | 28.591 | 717 | 473 | 13 | 64 | 758 | 46 | 745 | 8.60e-89 | 297 |
| Msa0366410 | AT2G27110.2 | 29.244 | 595 | 372 | 8 | 68 | 652 | 48 | 603 | 2.55e-85 | 288 |
| Msa0366410 | AT2G27110.1 | 29.244 | 595 | 372 | 8 | 68 | 652 | 48 | 603 | 2.55e-85 | 288 |
| Msa0366410 | AT3G06250.2 | 30.384 | 599 | 341 | 14 | 68 | 650 | 189 | 727 | 2.14e-79 | 270 |
| Msa0366410 | AT3G06250.1 | 30.384 | 599 | 341 | 14 | 68 | 650 | 189 | 727 | 2.14e-79 | 270 |
| Msa0366410 | AT3G06250.3 | 30.384 | 599 | 341 | 14 | 68 | 650 | 189 | 727 | 2.14e-79 | 270 |
| Msa0366410 | AT3G22170.2 | 28.744 | 581 | 361 | 11 | 67 | 625 | 68 | 617 | 2.89e-79 | 272 |
| Msa0366410 | AT3G22170.1 | 28.744 | 581 | 361 | 11 | 67 | 625 | 68 | 617 | 2.89e-79 | 272 |
| Msa0366410 | AT2G27110.3 | 32.530 | 415 | 263 | 4 | 248 | 652 | 51 | 458 | 2.32e-77 | 264 |
| Msa0366410 | AT4G38170.1 | 34.884 | 387 | 233 | 7 | 250 | 625 | 20 | 398 | 1.73e-70 | 241 |
| Msa0366410 | AT5G18960.2 | 28.268 | 612 | 340 | 15 | 68 | 650 | 210 | 751 | 4.96e-70 | 245 |
| Msa0366410 | AT5G18960.1 | 28.268 | 612 | 340 | 15 | 68 | 650 | 210 | 751 | 4.96e-70 | 245 |
| Msa0366410 | AT1G52520.1 | 28.741 | 588 | 367 | 15 | 69 | 632 | 85 | 644 | 8.87e-68 | 237 |
| Msa0366410 | AT2G32250.7 | 32.199 | 382 | 245 | 5 | 255 | 626 | 135 | 512 | 6.03e-67 | 236 |
| Msa0366410 | AT2G32250.5 | 32.199 | 382 | 245 | 5 | 255 | 626 | 176 | 553 | 6.14e-67 | 236 |
| Msa0366410 | AT2G32250.8 | 32.199 | 382 | 245 | 5 | 255 | 626 | 135 | 512 | 6.39e-67 | 236 |
| Msa0366410 | AT2G32250.2 | 32.199 | 382 | 245 | 5 | 255 | 626 | 176 | 553 | 1.08e-66 | 236 |
| Msa0366410 | AT2G32250.4 | 32.199 | 382 | 245 | 5 | 255 | 626 | 176 | 553 | 1.08e-66 | 236 |
| Msa0366410 | AT2G32250.6 | 32.199 | 382 | 245 | 5 | 255 | 626 | 176 | 553 | 1.27e-66 | 236 |
| Msa0366410 | AT2G32250.1 | 32.199 | 382 | 245 | 5 | 255 | 626 | 176 | 553 | 1.27e-66 | 236 |
| Msa0366410 | AT2G32250.3 | 32.199 | 382 | 245 | 5 | 255 | 626 | 176 | 553 | 1.27e-66 | 236 |
| Msa0366410 | AT1G76320.3 | 28.246 | 570 | 372 | 14 | 75 | 630 | 3 | 549 | 3.44e-66 | 232 |
| Msa0366410 | AT1G80010.1 | 26.923 | 624 | 411 | 13 | 69 | 664 | 95 | 701 | 1.15e-65 | 232 |
| Msa0366410 | AT1G76320.1 | 27.719 | 570 | 375 | 12 | 75 | 630 | 3 | 549 | 1.16e-65 | 232 |
| Msa0366410 | AT1G76320.4 | 27.719 | 570 | 375 | 12 | 75 | 630 | 3 | 549 | 1.16e-65 | 232 |
| Msa0366410 | AT1G76320.2 | 27.719 | 570 | 375 | 12 | 75 | 630 | 3 | 549 | 1.30e-65 | 232 |
| Msa0366410 | AT4G19990.5 | 27.616 | 583 | 359 | 12 | 72 | 632 | 24 | 565 | 1.29e-63 | 227 |
| Msa0366410 | AT4G19990.3 | 27.616 | 583 | 359 | 12 | 72 | 632 | 24 | 565 | 1.39e-63 | 227 |
| Msa0366410 | AT4G19990.4 | 27.616 | 583 | 359 | 12 | 72 | 632 | 24 | 565 | 1.39e-63 | 227 |
| Msa0366410 | AT4G19990.7 | 27.616 | 583 | 359 | 12 | 72 | 632 | 38 | 579 | 1.66e-63 | 227 |
| Msa0366410 | AT4G19990.6 | 27.616 | 583 | 359 | 12 | 72 | 632 | 24 | 565 | 2.18e-63 | 226 |
| Msa0366410 | AT4G19990.2 | 27.616 | 583 | 359 | 12 | 72 | 632 | 24 | 565 | 2.18e-63 | 226 |
| Msa0366410 | AT4G19990.1 | 32.170 | 401 | 255 | 6 | 245 | 632 | 112 | 508 | 7.83e-63 | 223 |
| Msa0366410 | AT1G10240.2 | 26.645 | 623 | 407 | 18 | 69 | 666 | 48 | 645 | 5.11e-60 | 215 |
| Msa0366410 | AT1G10240.1 | 26.645 | 623 | 407 | 18 | 69 | 666 | 48 | 645 | 5.11e-60 | 215 |
| Msa0366410 | AT5G28530.1 | 26.853 | 607 | 399 | 16 | 44 | 623 | 30 | 618 | 5.63e-59 | 213 |
| Msa0366410 | AT5G28530.3 | 26.333 | 600 | 407 | 13 | 44 | 623 | 30 | 614 | 2.61e-58 | 211 |
| Msa0366410 | AT5G28530.2 | 26.333 | 600 | 407 | 13 | 44 | 623 | 30 | 614 | 2.61e-58 | 211 |
| Msa0366410 | AT5G28530.4 | 23.658 | 596 | 369 | 17 | 44 | 623 | 30 | 555 | 8.66e-38 | 150 |
| Msa0366410 | AT5G28530.5 | 23.390 | 590 | 374 | 15 | 44 | 623 | 30 | 551 | 3.71e-37 | 148 |
| Msa0366410 | AT3G07500.1 | 31.532 | 111 | 68 | 2 | 67 | 176 | 31 | 134 | 8.92e-11 | 62.8 |
Find 106 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTAGTCTTTGCAAATTT+TGG | 0.090976 | 3_1:+61312861 | None:intergenic |
| GTTACATTCAACATTCTTTA+TGG | 0.113643 | 3_1:-61315478 | Msa0366410:CDS |
| ATGTTAACTTGGTTGAATTT+TGG | 0.201090 | 3_1:-61313529 | Msa0366410:CDS |
| ATATATTTCAACATGAATTA+TGG | 0.225211 | 3_1:-61313394 | Msa0366410:CDS |
| TTGCTCATGCAAAATGTTTC+AGG | 0.237233 | 3_1:-61313237 | Msa0366410:CDS |
| TTCTACTTCTTCAGGAATAT+TGG | 0.248557 | 3_1:+61312893 | None:intergenic |
| GACCAACGTGTTTCTGAAAT+TGG | 0.253037 | 3_1:+61315562 | None:intergenic |
| TCCTTATCATCCGTCTTATT+TGG | 0.253463 | 3_1:+61314622 | None:intergenic |
| AAAATTATGGAGATGATCTT+TGG | 0.255738 | 3_1:+61312724 | None:intergenic |
| GGAAAGATTTCTACTTCTTC+AGG | 0.257286 | 3_1:+61312885 | None:intergenic |
| TTTAATTCATCATCGCAATT+TGG | 0.259676 | 3_1:+61314808 | None:intergenic |
| TTGAGTTGGAAAAGAATAAA+TGG | 0.272170 | 3_1:-61313685 | Msa0366410:CDS |
| AGGACAGATGATTTGATTCT+TGG | 0.289591 | 3_1:-61312918 | Msa0366410:CDS |
| TACCTCATACGCATAATAAA+AGG | 0.300798 | 3_1:+61314195 | None:intergenic |
| TGAAACCACATCCCCAAATA+AGG | 0.310942 | 3_1:+61314111 | None:intergenic |
| CTATTCACAATGTGCTTACT+TGG | 0.311024 | 3_1:+61313152 | None:intergenic |
| AAGTTTCAAGTCATGTGTTT+GGG | 0.311339 | 3_1:-61313762 | Msa0366410:CDS |
| AGTTCACAAAAGCTTATTAC+AGG | 0.312085 | 3_1:-61314410 | Msa0366410:CDS |
| CCACGTTCCAACAATAGTTT+TGG | 0.324928 | 3_1:+61313461 | None:intergenic |
| AATTCAACCAAGTTAACATT+AGG | 0.328343 | 3_1:+61313533 | None:intergenic |
| TTCTAAACCAAAACTATTGT+TGG | 0.340318 | 3_1:-61313468 | Msa0366410:CDS |
| TCAAATACTTGTCCAATCTT+AGG | 0.341635 | 3_1:+61314784 | None:intergenic |
| ATTCAAAGTCTTTAAATCTC+TGG | 0.356604 | 3_1:+61314279 | None:intergenic |
| AAATTATGGAGATGATCTTT+GGG | 0.359234 | 3_1:+61312725 | None:intergenic |
| AAAGTTTCAAGTCATGTGTT+TGG | 0.363379 | 3_1:-61313763 | Msa0366410:CDS |
| CAAGTCTCTTCAAACTCATT+TGG | 0.372368 | 3_1:+61313728 | None:intergenic |
| CTTAGAAACGGTATCTTCAT+AGG | 0.408703 | 3_1:+61314454 | None:intergenic |
| TTTGGGCAGATGGTACTTGT+AGG | 0.415697 | 3_1:-61314144 | Msa0366410:CDS |
| AAAGTGTCTTTGAAATATGC+TGG | 0.421516 | 3_1:+61313626 | None:intergenic |
| CTATGAAGATACCGTTTCTA+AGG | 0.425716 | 3_1:-61314453 | Msa0366410:CDS |
| AAACACATGACTTGAAACTT+TGG | 0.429007 | 3_1:+61313765 | None:intergenic |
| TTATTCCTTATTTGGGGATG+TGG | 0.431251 | 3_1:-61314116 | Msa0366410:CDS |
| CAAATGAGTTTGAAGAGACT+TGG | 0.432734 | 3_1:-61313727 | Msa0366410:CDS |
| GGACAGATGATTTGATTCTT+GGG | 0.434817 | 3_1:-61312917 | Msa0366410:CDS |
| GATGAATTAAAGCCTAAGAT+TGG | 0.441758 | 3_1:-61314796 | Msa0366410:CDS |
| CAAGTAAGCACATTGTGAAT+AGG | 0.442114 | 3_1:-61313151 | Msa0366410:CDS |
| GCATGTAGTAGAGCAAATAT+TGG | 0.447678 | 3_1:-61314388 | Msa0366410:CDS |
| GCCAAATAAGACGGATGATA+AGG | 0.447708 | 3_1:-61314623 | Msa0366410:CDS |
| GAAAATAAGAAAGATGAAGA+TGG | 0.456611 | 3_1:-61313347 | Msa0366410:CDS |
| TCTGAATCCTAATGTTAACT+TGG | 0.461262 | 3_1:-61313540 | Msa0366410:CDS |
| GGATTGCATGCGTGGATTGT+GGG | 0.462406 | 3_1:-61313373 | Msa0366410:CDS |
| CATAGCTGTGTGGAGAAGGC+TGG | 0.465632 | 3_1:-61313032 | Msa0366410:CDS |
| GAACTCGTCCTCATCATTCA+TGG | 0.466660 | 3_1:+61313790 | None:intergenic |
| TGATCGGTTATTATAAGAGT+TGG | 0.470629 | 3_1:+61313917 | None:intergenic |
| CCAAAATTTGCAAAGACTAA+AGG | 0.474060 | 3_1:-61312861 | Msa0366410:CDS |
| AAAATAAGAAAGATGAAGAT+GGG | 0.489609 | 3_1:-61313346 | Msa0366410:CDS |
| AAACAATTGGACGAGTTTGA+AGG | 0.490240 | 3_1:-61312957 | Msa0366410:CDS |
| CTGTCAAGGTTAGAAGAAGA+AGG | 0.491761 | 3_1:-61314585 | Msa0366410:CDS |
| TTTGATGACAAGGTTTGAGT+TGG | 0.496594 | 3_1:-61313699 | Msa0366410:CDS |
| AGGTAATAGATTGTCGATGA+TGG | 0.498326 | 3_1:+61314026 | None:intergenic |
| TGCAAAATGTTTCAGGCTGA+AGG | 0.500454 | 3_1:-61313230 | Msa0366410:CDS |
| TGACATAGCTAACAATGTCT+TGG | 0.504334 | 3_1:-61313096 | Msa0366410:CDS |
| TTCCTTGCAGACCTTAGAAA+CGG | 0.510667 | 3_1:+61314442 | None:intergenic |
| TCTATAGCCACTTTCATGGA+AGG | 0.520478 | 3_1:+61313890 | None:intergenic |
| TGGATTGCATGCGTGGATTG+TGG | 0.521916 | 3_1:-61313374 | Msa0366410:CDS |
| TCAAGATCCTTCCATGAAAG+TGG | 0.522014 | 3_1:-61313897 | Msa0366410:CDS |
| CTTACATAGCTGTGTGGAGA+AGG | 0.525967 | 3_1:-61313036 | Msa0366410:CDS |
| CATCGACAATCTATTACCTT+CGG | 0.531789 | 3_1:-61314022 | Msa0366410:CDS |
| TAAGAAAGATGAAGATGGGA+TGG | 0.532467 | 3_1:-61313342 | Msa0366410:CDS |
| AACAATTGGACGAGTTTGAA+GGG | 0.532908 | 3_1:-61312956 | Msa0366410:CDS |
| TATGATAACAGTGAGATCAA+TGG | 0.549874 | 3_1:-61313305 | Msa0366410:CDS |
| AAGAATCAAATCATCTGTCC+TGG | 0.550254 | 3_1:+61312920 | None:intergenic |
| AGAAGGGCTTTAACAAGAGA+AGG | 0.550276 | 3_1:-61314568 | Msa0366410:CDS |
| ACTTATTAAAAGAACAGTGT+GGG | 0.551687 | 3_1:-61314348 | Msa0366410:CDS |
| TTTCATGGAAGGATCTTGAT+CGG | 0.556444 | 3_1:+61313901 | None:intergenic |
| AGTGGTAAAAGAATTAAAAG+TGG | 0.556534 | 3_1:-61312837 | Msa0366410:CDS |
| GGACTTATAACAAATGAGAA+AGG | 0.557049 | 3_1:-61313995 | Msa0366410:CDS |
| TGAATTATGGATTGCATGCG+TGG | 0.559471 | 3_1:-61313381 | Msa0366410:CDS |
| AGAAAGGTGATTCATTCGTA+TGG | 0.560904 | 3_1:-61313979 | Msa0366410:CDS |
| TCTCCACACAGCTATGTAAG+TGG | 0.567374 | 3_1:+61313039 | None:intergenic |
| AAGTGTCTTTGAAATATGCT+GGG | 0.568081 | 3_1:+61313627 | None:intergenic |
| ATGATCTTTGGGGACAATTG+CGG | 0.572883 | 3_1:+61312736 | None:intergenic |
| GGGTTATTTGCCAAATAAGA+CGG | 0.573634 | 3_1:-61314632 | Msa0366410:CDS |
| TTTGCAAAGACTAAAGGTAG+TGG | 0.573810 | 3_1:-61312855 | Msa0366410:CDS |
| GCAAACTCATTTCTGATGTG+TGG | 0.577677 | 3_1:-61313064 | Msa0366410:CDS |
| ACACAAAGTATGTGTCTACA+AGG | 0.578783 | 3_1:+61313203 | None:intergenic |
| GGAGAAGGCTGGAAAAGATA+AGG | 0.578848 | 3_1:-61313021 | Msa0366410:CDS |
| TGATGGTTTATCCCGGTGAA+AGG | 0.578866 | 3_1:+61314043 | None:intergenic |
| AAATGAGTTTGAAGAGACTT+GGG | 0.582686 | 3_1:-61313726 | Msa0366410:CDS |
| AATTAAAAGTGGCAAAGAGA+AGG | 0.584555 | 3_1:-61312826 | Msa0366410:CDS |
| TACCGTTTCTAAGGTCTGCA+AGG | 0.585272 | 3_1:-61314444 | Msa0366410:CDS |
| GTGAAGCAAGTGGATGTGTA+TGG | 0.586364 | 3_1:+61314476 | None:intergenic |
| CTCCAATTTCAGAAACACGT+TGG | 0.589662 | 3_1:-61315564 | Msa0366410:CDS |
| CTTATTAAAAGAACAGTGTG+GGG | 0.593050 | 3_1:-61314347 | Msa0366410:CDS |
| TTGTCGATGATGGTTTATCC+CGG | 0.594835 | 3_1:+61314036 | None:intergenic |
| AAGGGAGTTCTAAGAGAACC+AGG | 0.594888 | 3_1:-61312938 | Msa0366410:CDS |
| GCAAAGTGAATCTACTGTCA+AGG | 0.595204 | 3_1:-61314599 | Msa0366410:CDS |
| TGTCAAGGTTAGAAGAAGAA+GGG | 0.596214 | 3_1:-61314584 | Msa0366410:CDS |
| TGTTATAAGTCCTACGCCGA+AGG | 0.599087 | 3_1:+61314006 | None:intergenic |
| CTACTCATAGATTGTGCATG+TGG | 0.604136 | 3_1:-61313850 | Msa0366410:CDS |
| TTGGTTGGAGGTGAAGTGGG+AGG | 0.608966 | 3_1:+61315540 | None:intergenic |
| CAATCTATTACCTTCGGCGT+AGG | 0.610128 | 3_1:-61314016 | Msa0366410:CDS |
| GTATTTGATACGTTAGCAGA+AGG | 0.613843 | 3_1:-61314769 | Msa0366410:CDS |
| TCATACGCATAATAAAAGGA+TGG | 0.619753 | 3_1:+61314199 | None:intergenic |
| TGTTTGAGATTCGAAGCATG+TGG | 0.623687 | 3_1:-61313652 | Msa0366410:CDS |
| CACTTATTAAAAGAACAGTG+TGG | 0.629235 | 3_1:-61314349 | Msa0366410:CDS |
| GTAAGCACATTGTGAATAGG+TGG | 0.634124 | 3_1:-61313148 | Msa0366410:CDS |
| AGTTTCAAGTCATGTGTTTG+GGG | 0.635288 | 3_1:-61313761 | Msa0366410:CDS |
| CCAAAACTATTGTTGGAACG+TGG | 0.638878 | 3_1:-61313461 | Msa0366410:CDS |
| AATTATGGAGATGATCTTTG+GGG | 0.641900 | 3_1:+61312726 | None:intergenic |
| TGTTGGAACGTGGTATCGAG+AGG | 0.648329 | 3_1:-61313451 | Msa0366410:CDS |
| ATCTTCATAGGTGAAGCAAG+TGG | 0.652183 | 3_1:+61314466 | None:intergenic |
| AGGTGTTTCCATGAATGATG+AGG | 0.654152 | 3_1:-61313798 | Msa0366410:CDS |
| GCAAGACTTTGTAAGACATG+CGG | 0.689884 | 3_1:-61312780 | Msa0366410:CDS |
| TTATTAAAAGAACAGTGTGG+GGG | 0.706691 | 3_1:-61314346 | Msa0366410:CDS |
| GAACCACTTACATAGCTGTG+TGG | 0.775450 | 3_1:-61313042 | Msa0366410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTCAATAAAATAATATAA+AGG | + | chr3_1:61313449-61313468 | None:intergenic | 10.0% |
| !! | TGTATATATCAATATATGTT+AGG | - | chr3_1:61313053-61313072 | Msa0366410:CDS | 15.0% |
| !! | GGAAAACAAAATAAATAAAA+AGG | + | chr3_1:61313428-61313447 | None:intergenic | 15.0% |
| !! | ATATATTTCAACATGAATTA+TGG | - | chr3_1:61314919-61314938 | Msa0366410:intron | 15.0% |
| !! | AAACAATTATAATATACCTG+AGG | + | chr3_1:61312890-61312909 | None:intergenic | 20.0% |
| !! | AAAAAAAACAACTATCTCTT+AGG | + | chr3_1:61312929-61312948 | None:intergenic | 20.0% |
| !!! | TTTTTTCCCTATTTTTTTGT+TGG | - | chr3_1:61312943-61312962 | Msa0366410:CDS | 20.0% |
| !! | ATAGAACCAACAAAAAAATA+GGG | + | chr3_1:61312952-61312971 | None:intergenic | 20.0% |
| !! | AATAGAACCAACAAAAAAAT+AGG | + | chr3_1:61312953-61312972 | None:intergenic | 20.0% |
| !!! | TTATGTTTTGTTCTTTTTTG+AGG | - | chr3_1:61313026-61313045 | Msa0366410:CDS | 20.0% |
| !! | ACATATATTGATATATACAG+TGG | + | chr3_1:61313052-61313071 | None:intergenic | 20.0% |
| !!! | TATATACATGATTAGTTCAA+GGG | + | chr3_1:61313176-61313195 | None:intergenic | 20.0% |
| !!! | ATATATACATGATTAGTTCA+AGG | + | chr3_1:61313177-61313196 | None:intergenic | 20.0% |
| !! | AGGATTAAACAAAGAATTAA+AGG | + | chr3_1:61313408-61313427 | None:intergenic | 20.0% |
| !!! | TTTTGATAGATTACTTTAGA+AGG | - | chr3_1:61314076-61314095 | Msa0366410:CDS | 20.0% |
| !! | AGGAAAAATTATTCCTTATT+TGG | - | chr3_1:61314189-61314208 | Msa0366410:CDS | 20.0% |
| !!! | GGAAAAATTATTCCTTATTT+GGG | - | chr3_1:61314190-61314209 | Msa0366410:CDS | 20.0% |
| !!! | GAAAAATTATTCCTTATTTG+GGG | - | chr3_1:61314191-61314210 | Msa0366410:CDS | 20.0% |
| !!! | AAAAAAGTTTCTGAAAAAGT+AGG | - | chr3_1:61314495-61314514 | Msa0366410:CDS | 20.0% |
| !!! | ATATTTCAAAGACACTTTTA+TGG | - | chr3_1:61314692-61314711 | Msa0366410:CDS | 20.0% |
| !! | AAAATAAGAAAGATGAAGAT+GGG | - | chr3_1:61314967-61314986 | Msa0366410:intron | 20.0% |
| !!! | AAATTGCTTTTTGTGTTAAA+TGG | - | chr3_1:61315317-61315336 | Msa0366410:intron | 20.0% |
| !! | TGTTAACATAGAAAAACAAT+TGG | - | chr3_1:61315343-61315362 | Msa0366410:intron | 20.0% |
| !!! | TTCAGATTGATATTTTTGGT+TGG | + | chr3_1:61312791-61312810 | None:intergenic | 25.0% |
| !! | CCAATTCAGATTGATATTTT+TGG | + | chr3_1:61312795-61312814 | None:intergenic | 25.0% |
| ! | CCAAAAATATCAATCTGAAT+TGG | - | chr3_1:61312792-61312811 | Msa0366410:CDS | 25.0% |
| ! | GTTACATTCAACATTCTTTA+TGG | - | chr3_1:61312835-61312854 | Msa0366410:CDS | 25.0% |
| ! | TTATTATCATTATGAGCACA+TGG | - | chr3_1:61313269-61313288 | Msa0366410:CDS | 25.0% |
| !!! | TAATGTTGACTTCTAATTTG+TGG | - | chr3_1:61313325-61313344 | Msa0366410:CDS | 25.0% |
| ! | TTTAATTCATCATCGCAATT+TGG | + | chr3_1:61313508-61313527 | None:intergenic | 25.0% |
| !! | TCATCGACTATAGATAAAAA+CGG | - | chr3_1:61313622-61313641 | Msa0366410:CDS | 25.0% |
| !!! | ATGCAAATGTTGTTTTCAAA+TGG | - | chr3_1:61313773-61313792 | Msa0366410:CDS | 25.0% |
| !!! | TGCAAATGTTGTTTTCAAAT+GGG | - | chr3_1:61313774-61313793 | Msa0366410:CDS | 25.0% |
| ! | ACTTATTAAAAGAACAGTGT+GGG | - | chr3_1:61313965-61313984 | Msa0366410:CDS | 25.0% |
| ! | ATTCAAAGTCTTTAAATCTC+TGG | + | chr3_1:61314037-61314056 | None:intergenic | 25.0% |
| !! | ATGGTTGTTTGAAAAGTTTT+TGG | - | chr3_1:61314353-61314372 | Msa0366410:CDS | 25.0% |
| !!! | TTGAGTTGGAAAAGAATAAA+TGG | - | chr3_1:61314628-61314647 | Msa0366410:CDS | 25.0% |
| !! | GAAAGTGAGAATTCTTTTTA+CGG | - | chr3_1:61314744-61314763 | Msa0366410:CDS | 25.0% |
| ! | AATTCAACCAAGTTAACATT+AGG | + | chr3_1:61314783-61314802 | None:intergenic | 25.0% |
| !!! | ATGTTAACTTGGTTGAATTT+TGG | - | chr3_1:61314784-61314803 | Msa0366410:CDS | 25.0% |
| ! | TTCTAAACCAAAACTATTGT+TGG | - | chr3_1:61314845-61314864 | Msa0366410:intron | 25.0% |
| ! | GAAAATAAGAAAGATGAAGA+TGG | - | chr3_1:61314966-61314985 | Msa0366410:intron | 25.0% |
| !!! | ACACATACTTTGTGTTTTAA+AGG | - | chr3_1:61315118-61315137 | Msa0366410:intron | 25.0% |
| !!! | CACATACTTTGTGTTTTAAA+GGG | - | chr3_1:61315119-61315138 | Msa0366410:intron | 25.0% |
| ! | AGTGGTAAAAGAATTAAAAG+TGG | - | chr3_1:61315476-61315495 | Msa0366410:CDS | 25.0% |
| !!! | AGATTGATATTTTTGGTTGG+AGG | + | chr3_1:61312788-61312807 | None:intergenic | 30.0% |
| !!! | AACTAGTTTTCAAATTCCTC+AGG | - | chr3_1:61312871-61312890 | Msa0366410:CDS | 30.0% |
| TCTTGTTCATTAATGTCTAC+AGG | + | chr3_1:61313098-61313117 | None:intergenic | 30.0% | |
| TCTCTAATATGCAGAAAGAT+TGG | + | chr3_1:61313145-61313164 | None:intergenic | 30.0% | |
| !! | ATGAGATTGACTTTCACTTT+TGG | + | chr3_1:61313217-61313236 | None:intergenic | 30.0% |
| !!! | TTTTTAAGATTGTTGTCCAG+TGG | - | chr3_1:61313372-61313391 | Msa0366410:CDS | 30.0% |
| GATGAATTAAAGCCTAAGAT+TGG | - | chr3_1:61313517-61313536 | Msa0366410:CDS | 30.0% | |
| TCAAATACTTGTCCAATCTT+AGG | + | chr3_1:61313532-61313551 | None:intergenic | 30.0% | |
| !!! | AAATGTTGTTTTCAAATGGG+TGG | - | chr3_1:61313777-61313796 | Msa0366410:CDS | 30.0% |
| !!! | AATGTTGTTTTCAAATGGGT+GGG | - | chr3_1:61313778-61313797 | Msa0366410:CDS | 30.0% |
| AGTTCACAAAAGCTTATTAC+AGG | - | chr3_1:61313903-61313922 | Msa0366410:CDS | 30.0% | |
| ! | CTGTTCTTTTAATAAGTGGA+AGG | + | chr3_1:61313962-61313981 | None:intergenic | 30.0% |
| ! | CACACTGTTCTTTTAATAAG+TGG | + | chr3_1:61313966-61313985 | None:intergenic | 30.0% |
| CACTTATTAAAAGAACAGTG+TGG | - | chr3_1:61313964-61313983 | Msa0366410:CDS | 30.0% | |
| CTTATTAAAAGAACAGTGTG+GGG | - | chr3_1:61313966-61313985 | Msa0366410:CDS | 30.0% | |
| TTATTAAAAGAACAGTGTGG+GGG | - | chr3_1:61313967-61313986 | Msa0366410:CDS | 30.0% | |
| TCATACGCATAATAAAAGGA+TGG | + | chr3_1:61314117-61314136 | None:intergenic | 30.0% | |
| ! | ATCCTTTTATTATGCGTATG+AGG | - | chr3_1:61314116-61314135 | Msa0366410:CDS | 30.0% |
| TACCTCATACGCATAATAAA+AGG | + | chr3_1:61314121-61314140 | None:intergenic | 30.0% | |
| ! | TTTTATTATGCGTATGAGGT+AGG | - | chr3_1:61314120-61314139 | Msa0366410:CDS | 30.0% |
| GGACTTATAACAAATGAGAA+AGG | - | chr3_1:61314318-61314337 | Msa0366410:CDS | 30.0% | |
| !! | TGAAAAGTTTTTGGAAGCAA+TGG | - | chr3_1:61314362-61314381 | Msa0366410:CDS | 30.0% |
| !! | GAAAAGTTTTTGGAAGCAAT+GGG | - | chr3_1:61314363-61314382 | Msa0366410:CDS | 30.0% |
| TGATCGGTTATTATAAGAGT+TGG | + | chr3_1:61314399-61314418 | None:intergenic | 30.0% | |
| !! | ATTTTCTATAGCCACTTTCA+TGG | + | chr3_1:61314430-61314449 | None:intergenic | 30.0% |
| AAACACATGACTTGAAACTT+TGG | + | chr3_1:61314551-61314570 | None:intergenic | 30.0% | |
| ! | AAAGTTTCAAGTCATGTGTT+TGG | - | chr3_1:61314550-61314569 | Msa0366410:CDS | 30.0% |
| ! | AAGTTTCAAGTCATGTGTTT+GGG | - | chr3_1:61314551-61314570 | Msa0366410:CDS | 30.0% |
| AAATGAGTTTGAAGAGACTT+GGG | - | chr3_1:61314587-61314606 | Msa0366410:CDS | 30.0% | |
| !! | AAGTGTCTTTGAAATATGCT+GGG | + | chr3_1:61314689-61314708 | None:intergenic | 30.0% |
| !! | AAAGTGTCTTTGAAATATGC+TGG | + | chr3_1:61314690-61314709 | None:intergenic | 30.0% |
| TCTGAATCCTAATGTTAACT+TGG | - | chr3_1:61314773-61314792 | Msa0366410:CDS | 30.0% | |
| TATGATAACAGTGAGATCAA+TGG | - | chr3_1:61315008-61315027 | Msa0366410:intron | 30.0% | |
| TTCTACTTCTTCAGGAATAT+TGG | + | chr3_1:61315423-61315442 | None:intergenic | 30.0% | |
| !! | TTAGTCTTTGCAAATTTTGG+TGG | + | chr3_1:61315452-61315471 | None:intergenic | 30.0% |
| !! | CCTTTAGTCTTTGCAAATTT+TGG | + | chr3_1:61315455-61315474 | None:intergenic | 30.0% |
| CCAAAATTTGCAAAGACTAA+AGG | - | chr3_1:61315452-61315471 | Msa0366410:CDS | 30.0% | |
| AATTAAAAGTGGCAAAGAGA+AGG | - | chr3_1:61315487-61315506 | Msa0366410:CDS | 30.0% | |
| !! | TTGTTGGTTCTATTGTTGTC+CGG | - | chr3_1:61312959-61312978 | Msa0366410:CDS | 35.0% |
| GTTCATTAATGTCTACAGGT+TGG | + | chr3_1:61313094-61313113 | None:intergenic | 35.0% | |
| !! | CACGAGATAAGTTTTATGGT+TGG | + | chr3_1:61313297-61313316 | None:intergenic | 35.0% |
| ! | GAAGCACGAGATAAGTTTTA+TGG | + | chr3_1:61313301-61313320 | None:intergenic | 35.0% |
| GTATTTGATACGTTAGCAGA+AGG | - | chr3_1:61313544-61313563 | Msa0366410:CDS | 35.0% | |
| TTACGAAAAATACGCAGTCT+CGG | - | chr3_1:61313576-61313595 | Msa0366410:CDS | 35.0% | |
| !! | ACATTTTGTTTGCTCGAAAG+AGG | - | chr3_1:61313660-61313679 | Msa0366410:CDS | 35.0% |
| !! | CATTTTGTTTGCTCGAAAGA+GGG | - | chr3_1:61313661-61313680 | Msa0366410:CDS | 35.0% |
| GGGTTATTTGCCAAATAAGA+CGG | - | chr3_1:61313681-61313700 | Msa0366410:CDS | 35.0% | |
| ! | TCCTTATCATCCGTCTTATT+TGG | + | chr3_1:61313694-61313713 | None:intergenic | 35.0% |
| TGTCAAGGTTAGAAGAAGAA+GGG | - | chr3_1:61313729-61313748 | Msa0366410:CDS | 35.0% | |
| !!! | ATGTTGTTTTCAAATGGGTG+GGG | - | chr3_1:61313779-61313798 | Msa0366410:CDS | 35.0% |
| CTTAGAAACGGTATCTTCAT+AGG | + | chr3_1:61313862-61313881 | None:intergenic | 35.0% | |
| CTATGAAGATACCGTTTCTA+AGG | - | chr3_1:61313860-61313879 | Msa0366410:CDS | 35.0% | |
| GCATGTAGTAGAGCAAATAT+TGG | - | chr3_1:61313925-61313944 | Msa0366410:CDS | 35.0% | |
| ! | TTATTCCTTATTTGGGGATG+TGG | - | chr3_1:61314197-61314216 | Msa0366410:CDS | 35.0% |
| ! | TTGATTTTTGCACCTTTCAC+CGG | - | chr3_1:61314258-61314277 | Msa0366410:CDS | 35.0% |
| AGGTAATAGATTGTCGATGA+TGG | + | chr3_1:61314290-61314309 | None:intergenic | 35.0% | |
| CATCGACAATCTATTACCTT+CGG | - | chr3_1:61314291-61314310 | Msa0366410:CDS | 35.0% | |
| AGAAAGGTGATTCATTCGTA+TGG | - | chr3_1:61314334-61314353 | Msa0366410:CDS | 35.0% | |
| TTTCATGGAAGGATCTTGAT+CGG | + | chr3_1:61314415-61314434 | None:intergenic | 35.0% | |
| ! | AGTTTCAAGTCATGTGTTTG+GGG | - | chr3_1:61314552-61314571 | Msa0366410:CDS | 35.0% |
| CAAGTCTCTTCAAACTCATT+TGG | + | chr3_1:61314588-61314607 | None:intergenic | 35.0% | |
| CAAATGAGTTTGAAGAGACT+TGG | - | chr3_1:61314586-61314605 | Msa0366410:CDS | 35.0% | |
| ! | TTTGATGACAAGGTTTGAGT+TGG | - | chr3_1:61314614-61314633 | Msa0366410:CDS | 35.0% |
| ! | TTCAAAGACACTTTTATGGC+TGG | - | chr3_1:61314696-61314715 | Msa0366410:CDS | 35.0% |
| ! | TCAAAGACACTTTTATGGCT+GGG | - | chr3_1:61314697-61314716 | Msa0366410:CDS | 35.0% |
| TAAGAAAGATGAAGATGGGA+TGG | - | chr3_1:61314971-61314990 | Msa0366410:intron | 35.0% | |
| TTGCTCATGCAAAATGTTTC+AGG | - | chr3_1:61315076-61315095 | Msa0366410:intron | 35.0% | |
| ACACAAAGTATGTGTCTACA+AGG | + | chr3_1:61315113-61315132 | None:intergenic | 35.0% | |
| CTATTCACAATGTGCTTACT+TGG | + | chr3_1:61315164-61315183 | None:intergenic | 35.0% | |
| CAAGTAAGCACATTGTGAAT+AGG | - | chr3_1:61315162-61315181 | Msa0366410:intron | 35.0% | |
| TGACATAGCTAACAATGTCT+TGG | - | chr3_1:61315217-61315236 | Msa0366410:intron | 35.0% | |
| AAACAATTGGACGAGTTTGA+AGG | - | chr3_1:61315356-61315375 | Msa0366410:intron | 35.0% | |
| AACAATTGGACGAGTTTGAA+GGG | - | chr3_1:61315357-61315376 | Msa0366410:intron | 35.0% | |
| AAGAATCAAATCATCTGTCC+TGG | + | chr3_1:61315396-61315415 | None:intergenic | 35.0% | |
| AGGACAGATGATTTGATTCT+TGG | - | chr3_1:61315395-61315414 | Msa0366410:intron | 35.0% | |
| GGACAGATGATTTGATTCTT+GGG | - | chr3_1:61315396-61315415 | Msa0366410:intron | 35.0% | |
| GGAAAGATTTCTACTTCTTC+AGG | + | chr3_1:61315431-61315450 | None:intergenic | 35.0% | |
| TTTGCAAAGACTAAAGGTAG+TGG | - | chr3_1:61315458-61315477 | Msa0366410:CDS | 35.0% | |
| CTCCAATTTCAGAAACACGT+TGG | - | chr3_1:61312749-61312768 | Msa0366410:CDS | 40.0% | |
| !! | GACCAACGTGTTTCTGAAAT+TGG | + | chr3_1:61312754-61312773 | None:intergenic | 40.0% |
| !!! | TTTTTGGTTGGAGGTGAAGT+GGG | + | chr3_1:61312779-61312798 | None:intergenic | 40.0% |
| !!! | ATTTTTGGTTGGAGGTGAAG+TGG | + | chr3_1:61312780-61312799 | None:intergenic | 40.0% |
| CAACAAGCAAATAGAACCAC+CGG | + | chr3_1:61312981-61313000 | None:intergenic | 40.0% | |
| !!! | TTTCACTTTTGGCTTCTCAC+TGG | + | chr3_1:61313206-61313225 | None:intergenic | 40.0% |
| TAAAGGATCATCAGAACCAC+TGG | + | chr3_1:61313391-61313410 | None:intergenic | 40.0% | |
| GCCAAATAAGACGGATGATA+AGG | - | chr3_1:61313690-61313709 | Msa0366410:CDS | 40.0% | |
| GCAAAGTGAATCTACTGTCA+AGG | - | chr3_1:61313714-61313733 | Msa0366410:CDS | 40.0% | |
| CTGTCAAGGTTAGAAGAAGA+AGG | - | chr3_1:61313728-61313747 | Msa0366410:CDS | 40.0% | |
| ! | AGAAGGGCTTTAACAAGAGA+AGG | - | chr3_1:61313745-61313764 | Msa0366410:CDS | 40.0% |
| !!! | TGTTGTTTTCAAATGGGTGG+GGG | - | chr3_1:61313780-61313799 | Msa0366410:CDS | 40.0% |
| ATCTTCATAGGTGAAGCAAG+TGG | + | chr3_1:61313850-61313869 | None:intergenic | 40.0% | |
| TTCCTTGCAGACCTTAGAAA+CGG | + | chr3_1:61313874-61313893 | None:intergenic | 40.0% | |
| TGTGGGGGTTATGAAAATGT+TGG | - | chr3_1:61313982-61314001 | Msa0366410:CDS | 40.0% | |
| !!! | ACCGACTGAAGCATGTTTTT+TGG | - | chr3_1:61314151-61314170 | Msa0366410:CDS | 40.0% |
| CCCAAAAAACATGCTTCAGT+CGG | + | chr3_1:61314155-61314174 | None:intergenic | 40.0% | |
| !!! | CCGACTGAAGCATGTTTTTT+GGG | - | chr3_1:61314152-61314171 | Msa0366410:CDS | 40.0% |
| !!! | AAGCATGTTTTTTGGGCAGA+TGG | - | chr3_1:61314159-61314178 | Msa0366410:CDS | 40.0% |
| TGAAACCACATCCCCAAATA+AGG | + | chr3_1:61314205-61314224 | None:intergenic | 40.0% | |
| ! | TGATTTTTGCACCTTTCACC+GGG | - | chr3_1:61314259-61314278 | Msa0366410:CDS | 40.0% |
| ! | TTGTCGATGATGGTTTATCC+CGG | + | chr3_1:61314280-61314299 | None:intergenic | 40.0% |
| !! | AAGTTTTTGGAAGCAATGGG+TGG | - | chr3_1:61314366-61314385 | Msa0366410:CDS | 40.0% |
| TCAAGATCCTTCCATGAAAG+TGG | - | chr3_1:61314416-61314435 | Msa0366410:CDS | 40.0% | |
| ! | TCTATAGCCACTTTCATGGA+AGG | + | chr3_1:61314426-61314445 | None:intergenic | 40.0% |
| CTACTCATAGATTGTGCATG+TGG | - | chr3_1:61314463-61314482 | Msa0366410:CDS | 40.0% | |
| AGGTGTTTCCATGAATGATG+AGG | - | chr3_1:61314515-61314534 | Msa0366410:CDS | 40.0% | |
| ! | TGTTTGAGATTCGAAGCATG+TGG | - | chr3_1:61314661-61314680 | Msa0366410:CDS | 40.0% |
| ! | CTTTTATGGCTGGGATATTG+AGG | - | chr3_1:61314706-61314725 | Msa0366410:CDS | 40.0% |
| ! | CCACGTTCCAACAATAGTTT+TGG | + | chr3_1:61314855-61314874 | None:intergenic | 40.0% |
| CCAAAACTATTGTTGGAACG+TGG | - | chr3_1:61314852-61314871 | Msa0366410:intron | 40.0% | |
| ! | TGAATTATGGATTGCATGCG+TGG | - | chr3_1:61314932-61314951 | Msa0366410:intron | 40.0% |
| TGCAAAATGTTTCAGGCTGA+AGG | - | chr3_1:61315083-61315102 | Msa0366410:intron | 40.0% | |
| GTAAGCACATTGTGAATAGG+TGG | - | chr3_1:61315165-61315184 | Msa0366410:intron | 40.0% | |
| GCAAACTCATTTCTGATGTG+TGG | - | chr3_1:61315249-61315268 | Msa0366410:intron | 40.0% | |
| GCAAGACTTTGTAAGACATG+CGG | - | chr3_1:61315533-61315552 | Msa0366410:CDS | 40.0% | |
| ! | ATGATCTTTGGGGACAATTG+CGG | + | chr3_1:61315580-61315599 | None:intergenic | 40.0% |
| !! | TTGGTTCTATTGTTGTCCGG+TGG | - | chr3_1:61312962-61312981 | Msa0366410:CDS | 45.0% |
| ! | CGGTGGTTCTATTTGCTTGT+TGG | - | chr3_1:61312979-61312998 | Msa0366410:CDS | 45.0% |
| GAAAAATACGCAGTCTCGGT+CGG | - | chr3_1:61313580-61313599 | Msa0366410:CDS | 45.0% | |
| ATAAAAACGGCGTGAAGCGT+TGG | - | chr3_1:61313635-61313654 | Msa0366410:CDS | 45.0% | |
| GTGAAGCAAGTGGATGTGTA+TGG | + | chr3_1:61313840-61313859 | None:intergenic | 45.0% | |
| !! | TACCGTTTCTAAGGTCTGCA+AGG | - | chr3_1:61313869-61313888 | Msa0366410:CDS | 45.0% |
| TTTGGGCAGATGGTACTTGT+AGG | - | chr3_1:61314169-61314188 | Msa0366410:CDS | 45.0% | |
| TGATGGTTTATCCCGGTGAA+AGG | + | chr3_1:61314273-61314292 | None:intergenic | 45.0% | |
| CAATCTATTACCTTCGGCGT+AGG | - | chr3_1:61314297-61314316 | Msa0366410:CDS | 45.0% | |
| TGTTATAAGTCCTACGCCGA+AGG | + | chr3_1:61314310-61314329 | None:intergenic | 45.0% | |
| GAACTCGTCCTCATCATTCA+TGG | + | chr3_1:61314526-61314545 | None:intergenic | 45.0% | |
| !! | CTTGGGCGTTTTTGATGACA+AGG | - | chr3_1:61314604-61314623 | Msa0366410:CDS | 45.0% |
| GAACCACTTACATAGCTGTG+TGG | - | chr3_1:61315271-61315290 | Msa0366410:intron | 45.0% | |
| TCTCCACACAGCTATGTAAG+TGG | + | chr3_1:61315277-61315296 | None:intergenic | 45.0% | |
| CTTACATAGCTGTGTGGAGA+AGG | - | chr3_1:61315277-61315296 | Msa0366410:intron | 45.0% | |
| GGAGAAGGCTGGAAAAGATA+AGG | - | chr3_1:61315292-61315311 | Msa0366410:intron | 45.0% | |
| !! | AAGGGAGTTCTAAGAGAACC+AGG | - | chr3_1:61315375-61315394 | Msa0366410:intron | 45.0% |
| !!! | ATATTTATTTTGTTAATTTT+AGG | - | chr3_1:61313468-61313487 | Msa0366410:CDS | 5.0% |
| ! | GTTTTCAAATGGGTGGGGGA+AGG | - | chr3_1:61313784-61313803 | Msa0366410:CDS | 50.0% |
| ! | TGTTGGAACGTGGTATCGAG+AGG | - | chr3_1:61314862-61314881 | Msa0366410:intron | 50.0% |
| ! | TGGATTGCATGCGTGGATTG+TGG | - | chr3_1:61314939-61314958 | Msa0366410:intron | 50.0% |
| ! | GGATTGCATGCGTGGATTGT+GGG | - | chr3_1:61314940-61314959 | Msa0366410:intron | 50.0% |
| TTGGTTGGAGGTGAAGTGGG+AGG | + | chr3_1:61312776-61312795 | None:intergenic | 55.0% | |
| CATAGCTGTGTGGAGAAGGC+TGG | - | chr3_1:61315281-61315300 | Msa0366410:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 61312728 | 61315607 | 61312728 | ID=Msa0366410;Name=Msa0366410 |
| chr3_1 | mRNA | 61312728 | 61315607 | 61312728 | ID=Msa0366410-mRNA-1;Parent=Msa0366410;Name=Msa0366410-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|1|1|2|0|760 |
| chr3_1 | exon | 61315443 | 61315607 | 61315443 | ID=Msa0366410-mRNA-1:exon:11878;Parent=Msa0366410-mRNA-1 |
| chr3_1 | exon | 61312728 | 61314845 | 61312728 | ID=Msa0366410-mRNA-1:exon:11877;Parent=Msa0366410-mRNA-1 |
| chr3_1 | CDS | 61315443 | 61315607 | 61315443 | ID=Msa0366410-mRNA-1:cds;Parent=Msa0366410-mRNA-1 |
| chr3_1 | CDS | 61312728 | 61314845 | 61312728 | ID=Msa0366410-mRNA-1:cds;Parent=Msa0366410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
