Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366450 | XP_003605525.1 | 53.043 | 230 | 88 | 1 | 1 | 210 | 1 | 230 | 3.12e-81 | 252 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366450 | sp|Q9FJK3|AGL80_ARATH | 54.286 | 140 | 63 | 1 | 1 | 140 | 1 | 139 | 8.96e-41 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366450 | G7JN85 | 53.043 | 230 | 88 | 1 | 1 | 210 | 1 | 230 | 1.49e-81 | 252 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0366450 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366450 | MtrunA17_Chr4g0014321 | 53.043 | 230 | 88 | 1 | 1 | 210 | 1 | 230 | 2.87e-85 | 252 |
| Msa0366450 | MtrunA17_Chr8g0351751 | 50.000 | 246 | 87 | 3 | 1 | 210 | 1 | 246 | 2.95e-74 | 224 |
| Msa0366450 | MtrunA17_Chr4g0013041 | 56.021 | 191 | 75 | 4 | 1 | 185 | 1 | 188 | 2.51e-66 | 203 |
| Msa0366450 | MtrunA17_Chr4g0014031 | 46.930 | 228 | 103 | 1 | 1 | 210 | 1 | 228 | 2.94e-63 | 196 |
| Msa0366450 | MtrunA17_Chr4g0014131 | 48.560 | 243 | 79 | 4 | 1 | 210 | 1 | 230 | 1.16e-61 | 192 |
| Msa0366450 | MtrunA17_Chr3g0110131 | 48.133 | 241 | 89 | 5 | 1 | 208 | 1 | 238 | 1.57e-58 | 184 |
| Msa0366450 | MtrunA17_Chr2g0296831 | 65.289 | 121 | 42 | 0 | 1 | 121 | 1 | 121 | 1.03e-48 | 155 |
| Msa0366450 | MtrunA17_Chr3g0107381 | 43.498 | 223 | 108 | 7 | 1 | 207 | 1 | 221 | 2.19e-48 | 157 |
| Msa0366450 | MtrunA17_Chr4g0014121 | 58.571 | 140 | 58 | 0 | 1 | 140 | 29 | 168 | 8.80e-44 | 145 |
| Msa0366450 | MtrunA17_Chr3g0107341 | 47.143 | 140 | 73 | 1 | 3 | 142 | 2 | 140 | 2.49e-43 | 142 |
| Msa0366450 | MtrunA17_Chr3g0107331 | 50.000 | 126 | 63 | 0 | 3 | 128 | 2 | 127 | 2.87e-43 | 142 |
| Msa0366450 | MtrunA17_Chr3g0107351 | 49.206 | 126 | 64 | 0 | 3 | 128 | 2 | 127 | 1.59e-42 | 140 |
| Msa0366450 | MtrunA17_Chr3g0107361 | 47.619 | 126 | 66 | 0 | 3 | 128 | 2 | 127 | 6.80e-41 | 136 |
| Msa0366450 | MtrunA17_Chr5g0420351 | 45.588 | 136 | 72 | 2 | 1 | 136 | 1 | 134 | 2.13e-33 | 117 |
| Msa0366450 | MtrunA17_Chr1g0197461 | 46.457 | 127 | 67 | 1 | 3 | 129 | 2 | 127 | 1.64e-32 | 115 |
| Msa0366450 | MtrunA17_Chr5g0432691 | 42.446 | 139 | 79 | 1 | 1 | 139 | 1 | 138 | 5.01e-31 | 111 |
| Msa0366450 | MtrunA17_Chr1g0197261 | 44.348 | 115 | 63 | 1 | 1 | 115 | 1 | 114 | 9.71e-31 | 110 |
| Msa0366450 | MtrunA17_Chr3g0107461 | 40.714 | 140 | 83 | 0 | 1 | 140 | 1 | 140 | 1.07e-30 | 110 |
| Msa0366450 | MtrunA17_Chr2g0283941 | 39.007 | 141 | 86 | 0 | 1 | 141 | 1 | 141 | 1.05e-28 | 107 |
| Msa0366450 | MtrunA17_Chr1g0197321 | 38.095 | 147 | 90 | 1 | 1 | 147 | 1 | 146 | 1.30e-28 | 105 |
| Msa0366450 | MtrunA17_Chr1g0188681 | 41.176 | 136 | 78 | 2 | 1 | 136 | 1 | 134 | 1.34e-28 | 105 |
| Msa0366450 | MtrunA17_Chr1g0193311 | 47.009 | 117 | 61 | 1 | 1 | 117 | 1 | 116 | 5.30e-27 | 100 |
| Msa0366450 | MtrunA17_Chr7g0218151 | 42.857 | 140 | 78 | 2 | 1 | 140 | 1 | 138 | 7.34e-27 | 100 |
| Msa0366450 | MtrunA17_Chr1g0188661 | 42.857 | 140 | 78 | 2 | 1 | 140 | 1 | 138 | 1.40e-26 | 100 |
| Msa0366450 | MtrunA17_Chr4g0012761 | 41.727 | 139 | 79 | 2 | 1 | 139 | 1 | 137 | 3.74e-26 | 99.0 |
| Msa0366450 | MtrunA17_Chr4g0031421 | 46.296 | 108 | 58 | 0 | 30 | 137 | 2 | 109 | 1.12e-25 | 97.1 |
| Msa0366450 | MtrunA17_Chr3g0106421 | 44.545 | 110 | 61 | 0 | 30 | 139 | 2 | 111 | 3.30e-25 | 97.8 |
| Msa0366450 | MtrunA17_Chr1g0188651 | 42.857 | 140 | 76 | 2 | 1 | 140 | 1 | 136 | 6.57e-25 | 95.5 |
| Msa0366450 | MtrunA17_Chr2g0296861 | 42.636 | 129 | 74 | 0 | 1 | 129 | 1 | 129 | 3.07e-24 | 94.0 |
| Msa0366450 | MtrunA17_Chr3g0105791 | 38.732 | 142 | 80 | 2 | 30 | 169 | 2 | 138 | 9.06e-24 | 92.0 |
| Msa0366450 | MtrunA17_Chr7g0267601 | 33.333 | 129 | 86 | 0 | 1 | 129 | 4 | 132 | 5.25e-22 | 93.2 |
| Msa0366450 | MtrunA17_Chr3g0128721 | 31.496 | 127 | 87 | 0 | 1 | 127 | 4 | 130 | 2.00e-20 | 89.0 |
| Msa0366450 | MtrunA17_Chr4g0008701 | 31.783 | 129 | 88 | 0 | 1 | 129 | 4 | 132 | 2.21e-20 | 88.6 |
| Msa0366450 | MtrunA17_Chr3g0106501 | 45.679 | 81 | 44 | 0 | 34 | 114 | 6 | 86 | 8.42e-19 | 79.7 |
| Msa0366450 | MtrunA17_Chr6g0457851 | 36.283 | 113 | 65 | 4 | 1 | 107 | 11 | 122 | 3.09e-13 | 67.4 |
| Msa0366450 | MtrunA17_Chr1g0212151 | 33.628 | 113 | 68 | 3 | 1 | 107 | 1 | 112 | 2.66e-11 | 62.0 |
| Msa0366450 | MtrunA17_Chr6g0449861 | 30.973 | 113 | 71 | 4 | 1 | 107 | 9 | 120 | 6.48e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366450 | AT5G48670.1 | 54.286 | 140 | 63 | 1 | 1 | 140 | 1 | 139 | 9.11e-42 | 144 |
| Msa0366450 | AT1G65300.1 | 47.899 | 119 | 62 | 0 | 3 | 121 | 2 | 120 | 2.25e-32 | 118 |
| Msa0366450 | AT3G05860.2 | 45.600 | 125 | 67 | 1 | 1 | 125 | 1 | 124 | 1.07e-31 | 115 |
| Msa0366450 | AT3G05860.3 | 45.600 | 125 | 67 | 1 | 1 | 125 | 1 | 124 | 1.35e-31 | 115 |
| Msa0366450 | AT3G05860.1 | 45.600 | 125 | 67 | 1 | 1 | 125 | 1 | 124 | 2.24e-31 | 115 |
| Msa0366450 | AT1G65330.1 | 44.138 | 145 | 72 | 1 | 3 | 147 | 2 | 137 | 3.93e-31 | 115 |
| Msa0366450 | AT5G26650.1 | 43.382 | 136 | 76 | 1 | 4 | 139 | 2 | 136 | 1.02e-30 | 116 |
| Msa0366450 | AT5G27960.1 | 42.446 | 139 | 78 | 2 | 4 | 141 | 2 | 139 | 1.32e-30 | 114 |
| Msa0366450 | AT5G26630.1 | 45.578 | 147 | 79 | 1 | 1 | 147 | 1 | 146 | 9.13e-30 | 110 |
| Msa0366450 | AT5G27810.1 | 52.174 | 92 | 44 | 0 | 30 | 121 | 2 | 93 | 2.26e-29 | 106 |
| Msa0366450 | AT1G31630.1 | 39.552 | 134 | 79 | 2 | 3 | 136 | 2 | 133 | 8.30e-29 | 110 |
| Msa0366450 | AT1G31640.1 | 38.060 | 134 | 81 | 2 | 3 | 136 | 2 | 133 | 4.15e-26 | 104 |
| Msa0366450 | AT2G28700.1 | 36.232 | 138 | 86 | 1 | 1 | 136 | 1 | 138 | 3.04e-24 | 98.2 |
| Msa0366450 | AT5G26580.1 | 38.028 | 142 | 72 | 3 | 1 | 141 | 1 | 127 | 9.11e-23 | 94.4 |
| Msa0366450 | AT1G22590.2 | 37.241 | 145 | 78 | 4 | 1 | 145 | 1 | 132 | 5.54e-22 | 88.6 |
| Msa0366450 | AT2G40210.1 | 33.514 | 185 | 107 | 4 | 1 | 169 | 1 | 185 | 1.13e-18 | 83.6 |
| Msa0366450 | AT5G55690.1 | 33.495 | 206 | 91 | 8 | 1 | 174 | 1 | 192 | 1.99e-16 | 76.3 |
| Msa0366450 | AT5G55690.2 | 33.495 | 206 | 91 | 8 | 1 | 174 | 1 | 192 | 1.99e-16 | 76.3 |
| Msa0366450 | AT5G58890.1 | 37.692 | 130 | 68 | 5 | 1 | 120 | 1 | 127 | 2.48e-15 | 73.2 |
| Msa0366450 | AT5G06500.1 | 32.031 | 128 | 87 | 0 | 1 | 128 | 1 | 128 | 5.11e-14 | 68.9 |
Find 61 sgRNAs with CRISPR-Local
Find 68 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAATAATGCTGACATTAT+TGG | 0.153902 | 3_1:-61338657 | Msa0366450:CDS |
| CAAGCGTGCGCTGTAATTTA+TGG | 0.181949 | 3_1:-61339124 | Msa0366450:CDS |
| AAGATAAACTGGCGAAATTA+AGG | 0.283159 | 3_1:-61338955 | Msa0366450:CDS |
| ATAATGTCAGCATTATTTAT+AGG | 0.286334 | 3_1:+61338660 | None:intergenic |
| CTCTTGATTTGCCATTTGTT+TGG | 0.294475 | 3_1:+61339009 | None:intergenic |
| GGAAAACAACGTATAATAAA+AGG | 0.303343 | 3_1:-61339198 | Msa0366450:CDS |
| CATTGTCATTTCCTCATTCG+TGG | 0.373285 | 3_1:+61338707 | None:intergenic |
| TGTTTGGTTTGTATAACTTC+AGG | 0.374091 | 3_1:+61339025 | None:intergenic |
| GTGGTTGATTTGAATTATCT+TGG | 0.376836 | 3_1:-61338851 | Msa0366450:CDS |
| CCCTTTGGTGAAGTCGATCC+TGG | 0.377842 | 3_1:-61338582 | Msa0366450:CDS |
| GAAATTAAGGAAGGACAATA+AGG | 0.381252 | 3_1:-61338942 | Msa0366450:CDS |
| AACCTCAGGTTGAGGTTCAT+AGG | 0.395757 | 3_1:+61339099 | None:intergenic |
| CTTTCGCTTTCAAAACCCTT+TGG | 0.399817 | 3_1:+61338975 | None:intergenic |
| TTCATTCAAAGAAGTAGGTT+GGG | 0.403575 | 3_1:+61338552 | None:intergenic |
| TTTGAAAGCGAAAGATAAAC+TGG | 0.405272 | 3_1:-61338966 | Msa0366450:CDS |
| GTGGATGGTGGTGGCGGCAG+TGG | 0.407500 | 3_1:+61338726 | None:intergenic |
| CTTATTTCATAAGCTTTCTT+CGG | 0.411380 | 3_1:+61339163 | None:intergenic |
| TTGATTTGAATTATCTTGGC+TGG | 0.433770 | 3_1:-61338847 | Msa0366450:intron |
| ATGAACCTCAACCTGAGGTT+TGG | 0.442477 | 3_1:-61339096 | Msa0366450:CDS |
| ACCTCAGGTTGAGGTTCATA+GGG | 0.446591 | 3_1:+61339100 | None:intergenic |
| TTTGATCAATGTCTTTATGC+AGG | 0.450902 | 3_1:-61338899 | Msa0366450:CDS |
| AAGTCAAGACCAACTACAAT+TGG | 0.453077 | 3_1:-61338751 | Msa0366450:CDS |
| ATGATTTCATTCAAAGAAGT+AGG | 0.454695 | 3_1:+61338547 | None:intergenic |
| TTTATGAACTTGATGATGAA+TGG | 0.460764 | 3_1:-61338624 | Msa0366450:CDS |
| TTTCATTCAAAGAAGTAGGT+TGG | 0.465604 | 3_1:+61338551 | None:intergenic |
| TCCTCATTCGTGGATGGTGG+TGG | 0.478125 | 3_1:+61338717 | None:intergenic |
| TATGAAATAAGCACACTTTG+CGG | 0.483205 | 3_1:-61339151 | Msa0366450:CDS |
| CATGGTGATGGCCAAACCTC+AGG | 0.485308 | 3_1:+61339085 | None:intergenic |
| AGTAGGTTGGGCAAAACTCC+AGG | 0.489606 | 3_1:+61338564 | None:intergenic |
| GTCATTTCCTCATTCGTGGA+TGG | 0.494180 | 3_1:+61338711 | None:intergenic |
| AGTTATACAAACCAAACAAA+TGG | 0.499169 | 3_1:-61339020 | Msa0366450:CDS |
| ATCGACTTCACCAAAGGGTA+TGG | 0.509298 | 3_1:+61338587 | None:intergenic |
| TCATTCGTGGATGGTGGTGG+CGG | 0.510545 | 3_1:+61338720 | None:intergenic |
| AGCAGCATCATTCACAATGA+AGG | 0.512306 | 3_1:+61339222 | None:intergenic |
| TGATGAATCATGGCCATGTT+GGG | 0.528819 | 3_1:-61338686 | Msa0366450:CDS |
| GGGGATGATACCATACCCTT+TGG | 0.549429 | 3_1:-61338597 | Msa0366450:CDS |
| GCCACCACCATCCACGAATG+AGG | 0.552446 | 3_1:-61338718 | Msa0366450:CDS |
| AACTTGATGATGAATGGTGA+TGG | 0.556175 | 3_1:-61338618 | Msa0366450:CDS |
| AGAGACTTTCATGAGCCAAA+GGG | 0.559426 | 3_1:-61338990 | Msa0366450:CDS |
| ATCACCATGTGAAGTCGAAA+GGG | 0.562914 | 3_1:-61339071 | Msa0366450:CDS |
| GCAGTGGAACCAATTGTAGT+TGG | 0.563775 | 3_1:+61338742 | None:intergenic |
| CCAGGATCGACTTCACCAAA+GGG | 0.564091 | 3_1:+61338582 | None:intergenic |
| AAGAGACTTTCATGAGCCAA+AGG | 0.572517 | 3_1:-61338991 | Msa0366450:CDS |
| TATTTATAGGCAACCCAACA+TGG | 0.573445 | 3_1:+61338673 | None:intergenic |
| CTTTCGACTTCACATGGTGA+TGG | 0.579657 | 3_1:+61339073 | None:intergenic |
| GAAATGACAATGATGAATCA+TGG | 0.579997 | 3_1:-61338696 | Msa0366450:CDS |
| TAATGCTGACATTATTGGAA+GGG | 0.581305 | 3_1:-61338652 | Msa0366450:CDS |
| CATCACCATGTGAAGTCGAA+AGG | 0.582343 | 3_1:-61339072 | Msa0366450:CDS |
| TCCAGGATCGACTTCACCAA+AGG | 0.583170 | 3_1:+61338581 | None:intergenic |
| ACTTGATGATGAATGGTGAT+GGG | 0.583295 | 3_1:-61338617 | Msa0366450:CDS |
| ATAATGCTGACATTATTGGA+AGG | 0.586516 | 3_1:-61338653 | Msa0366450:CDS |
| AGCACCCTTTCGACTTCACA+TGG | 0.589309 | 3_1:+61339067 | None:intergenic |
| ATGATGAATCATGGCCATGT+TGG | 0.605921 | 3_1:-61338687 | Msa0366450:CDS |
| GATGGCCAAACCTCAGGTTG+AGG | 0.606351 | 3_1:+61339091 | None:intergenic |
| ATTTCCTCATTCGTGGATGG+TGG | 0.617926 | 3_1:+61338714 | None:intergenic |
| TCATTGTGAATGATGCTGCT+AGG | 0.624411 | 3_1:-61339219 | Msa0366450:CDS |
| TAAACTGGCGAAATTAAGGA+AGG | 0.626838 | 3_1:-61338951 | Msa0366450:CDS |
| CCCCTATGAACCTCAACCTG+AGG | 0.641725 | 3_1:-61339101 | Msa0366450:CDS |
| CTTGATGATGAATGGTGATG+GGG | 0.653561 | 3_1:-61338616 | Msa0366450:CDS |
| CCTCAGGTTGAGGTTCATAG+GGG | 0.720052 | 3_1:+61339101 | None:intergenic |
| TGTGAACAACGATATGTCAG+TGG | 0.740913 | 3_1:-61338870 | Msa0366450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATGTCAGCATTATTTAT+AGG | + | chr3_1:61339147-61339166 | None:intergenic | 20.0% |
| !! | ATAAATAATGCTGACATTAT+TGG | - | chr3_1:61339147-61339166 | Msa0366450:CDS | 20.0% |
| ! | GGAAAACAACGTATAATAAA+AGG | - | chr3_1:61338606-61338625 | Msa0366450:CDS | 25.0% |
| ! | CTTATTTCATAAGCTTTCTT+CGG | + | chr3_1:61338644-61338663 | None:intergenic | 25.0% |
| ! | AGTTATACAAACCAAACAAA+TGG | - | chr3_1:61338784-61338803 | Msa0366450:intron | 25.0% |
| !!! | TTTATGAACTTGATGATGAA+TGG | - | chr3_1:61339180-61339199 | Msa0366450:CDS | 25.0% |
| TATGAAATAAGCACACTTTG+CGG | - | chr3_1:61338653-61338672 | Msa0366450:CDS | 30.0% | |
| !! | TGTTTGGTTTGTATAACTTC+AGG | + | chr3_1:61338782-61338801 | None:intergenic | 30.0% |
| TTTGAAAGCGAAAGATAAAC+TGG | - | chr3_1:61338838-61338857 | Msa0366450:intron | 30.0% | |
| AAGATAAACTGGCGAAATTA+AGG | - | chr3_1:61338849-61338868 | Msa0366450:CDS | 30.0% | |
| GAAATTAAGGAAGGACAATA+AGG | - | chr3_1:61338862-61338881 | Msa0366450:CDS | 30.0% | |
| TTTGATCAATGTCTTTATGC+AGG | - | chr3_1:61338905-61338924 | Msa0366450:CDS | 30.0% | |
| !! | GTGGTTGATTTGAATTATCT+TGG | - | chr3_1:61338953-61338972 | Msa0366450:CDS | 30.0% |
| ! | TTGATTTGAATTATCTTGGC+TGG | - | chr3_1:61338957-61338976 | Msa0366450:CDS | 30.0% |
| GAAATGACAATGATGAATCA+TGG | - | chr3_1:61339108-61339127 | Msa0366450:CDS | 30.0% | |
| ATAATGCTGACATTATTGGA+AGG | - | chr3_1:61339151-61339170 | Msa0366450:CDS | 30.0% | |
| TAATGCTGACATTATTGGAA+GGG | - | chr3_1:61339152-61339171 | Msa0366450:CDS | 30.0% | |
| !!! | AAAGGGTGCTCTCAAATTTT+AGG | - | chr3_1:61338750-61338769 | Msa0366450:CDS | 35.0% |
| !!! | AAGGGTGCTCTCAAATTTTA+GGG | - | chr3_1:61338751-61338770 | Msa0366450:CDS | 35.0% |
| !! | CTCTTGATTTGCCATTTGTT+TGG | + | chr3_1:61338798-61338817 | None:intergenic | 35.0% |
| TAAACTGGCGAAATTAAGGA+AGG | - | chr3_1:61338853-61338872 | Msa0366450:CDS | 35.0% | |
| ! | GTTGATAGACCACAAATTGA+AGG | - | chr3_1:61338979-61338998 | Msa0366450:CDS | 35.0% |
| AAGTCAAGACCAACTACAAT+TGG | - | chr3_1:61339053-61339072 | Msa0366450:CDS | 35.0% | |
| TATTTATAGGCAACCCAACA+TGG | + | chr3_1:61339134-61339153 | None:intergenic | 35.0% | |
| !! | AACTTGATGATGAATGGTGA+TGG | - | chr3_1:61339186-61339205 | Msa0366450:CDS | 35.0% |
| !! | ACTTGATGATGAATGGTGAT+GGG | - | chr3_1:61339187-61339206 | Msa0366450:CDS | 35.0% |
| AGCAGCATCATTCACAATGA+AGG | + | chr3_1:61338585-61338604 | None:intergenic | 40.0% | |
| TCATTGTGAATGATGCTGCT+AGG | - | chr3_1:61338585-61338604 | Msa0366450:CDS | 40.0% | |
| ATCACCATGTGAAGTCGAAA+GGG | - | chr3_1:61338733-61338752 | Msa0366450:CDS | 40.0% | |
| AAGAGACTTTCATGAGCCAA+AGG | - | chr3_1:61338813-61338832 | Msa0366450:intron | 40.0% | |
| AGAGACTTTCATGAGCCAAA+GGG | - | chr3_1:61338814-61338833 | Msa0366450:intron | 40.0% | |
| CTTTCGCTTTCAAAACCCTT+TGG | + | chr3_1:61338832-61338851 | None:intergenic | 40.0% | |
| TGTGAACAACGATATGTCAG+TGG | - | chr3_1:61338934-61338953 | Msa0366450:CDS | 40.0% | |
| TACCAAGGTCCTTCAATTTG+TGG | + | chr3_1:61338991-61339010 | None:intergenic | 40.0% | |
| AATTGAAGGACCTTGGTAGA+AGG | - | chr3_1:61338993-61339012 | Msa0366450:CDS | 40.0% | |
| ATGATTCCAACCTTCTACCA+AGG | + | chr3_1:61339006-61339025 | None:intergenic | 40.0% | |
| TTGGTAGAAGGTTGGAATCA+TGG | - | chr3_1:61339005-61339024 | Msa0366450:CDS | 40.0% | |
| TGGTAGAAGGTTGGAATCAT+GGG | - | chr3_1:61339006-61339025 | Msa0366450:CDS | 40.0% | |
| ! | CATTGTCATTTCCTCATTCG+TGG | + | chr3_1:61339100-61339119 | None:intergenic | 40.0% |
| ATGATGAATCATGGCCATGT+TGG | - | chr3_1:61339117-61339136 | Msa0366450:CDS | 40.0% | |
| TGATGAATCATGGCCATGTT+GGG | - | chr3_1:61339118-61339137 | Msa0366450:CDS | 40.0% | |
| !! | CTTGATGATGAATGGTGATG+GGG | - | chr3_1:61339188-61339207 | Msa0366450:CDS | 40.0% |
| CAAGCGTGCGCTGTAATTTA+TGG | - | chr3_1:61338680-61338699 | Msa0366450:CDS | 45.0% | |
| !! | ACCTCAGGTTGAGGTTCATA+GGG | + | chr3_1:61338707-61338726 | None:intergenic | 45.0% |
| !! | AACCTCAGGTTGAGGTTCAT+AGG | + | chr3_1:61338708-61338727 | None:intergenic | 45.0% |
| ATGAACCTCAACCTGAGGTT+TGG | - | chr3_1:61338708-61338727 | Msa0366450:CDS | 45.0% | |
| CTTTCGACTTCACATGGTGA+TGG | + | chr3_1:61338734-61338753 | None:intergenic | 45.0% | |
| CATCACCATGTGAAGTCGAA+AGG | - | chr3_1:61338732-61338751 | Msa0366450:CDS | 45.0% | |
| GACCACAAATTGAAGGACCT+TGG | - | chr3_1:61338986-61339005 | Msa0366450:CDS | 45.0% | |
| GCAGTGGAACCAATTGTAGT+TGG | + | chr3_1:61339065-61339084 | None:intergenic | 45.0% | |
| ATTTCCTCATTCGTGGATGG+TGG | + | chr3_1:61339093-61339112 | None:intergenic | 45.0% | |
| GTCATTTCCTCATTCGTGGA+TGG | + | chr3_1:61339096-61339115 | None:intergenic | 45.0% | |
| ! | ATCGACTTCACCAAAGGGTA+TGG | + | chr3_1:61339220-61339239 | None:intergenic | 45.0% |
| !! | CCTCAGGTTGAGGTTCATAG+GGG | + | chr3_1:61338706-61338725 | None:intergenic | 50.0% |
| AGCACCCTTTCGACTTCACA+TGG | + | chr3_1:61338740-61338759 | None:intergenic | 50.0% | |
| GAAGGACCTTGGTAGAAGGT+TGG | - | chr3_1:61338997-61339016 | Msa0366450:CDS | 50.0% | |
| GGGGATGATACCATACCCTT+TGG | - | chr3_1:61339207-61339226 | Msa0366450:CDS | 50.0% | |
| ! | CCAGGATCGACTTCACCAAA+GGG | + | chr3_1:61339225-61339244 | None:intergenic | 50.0% |
| ! | TCCAGGATCGACTTCACCAA+AGG | + | chr3_1:61339226-61339245 | None:intergenic | 50.0% |
| ! | AGTAGGTTGGGCAAAACTCC+AGG | + | chr3_1:61339243-61339262 | None:intergenic | 50.0% |
| CCCCTATGAACCTCAACCTG+AGG | - | chr3_1:61338703-61338722 | Msa0366450:CDS | 55.0% | |
| ! | GATGGCCAAACCTCAGGTTG+AGG | + | chr3_1:61338716-61338735 | None:intergenic | 55.0% |
| !! | CATGGTGATGGCCAAACCTC+AGG | + | chr3_1:61338722-61338741 | None:intergenic | 55.0% |
| !! | TCATTCGTGGATGGTGGTGG+CGG | + | chr3_1:61339087-61339106 | None:intergenic | 55.0% |
| ! | TCCTCATTCGTGGATGGTGG+TGG | + | chr3_1:61339090-61339109 | None:intergenic | 55.0% |
| CCCTTTGGTGAAGTCGATCC+TGG | - | chr3_1:61339222-61339241 | Msa0366450:CDS | 55.0% | |
| GCCACCACCATCCACGAATG+AGG | - | chr3_1:61339086-61339105 | Msa0366450:CDS | 60.0% | |
| !! | GTGGATGGTGGTGGCGGCAG+TGG | + | chr3_1:61339081-61339100 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 61338557 | 61339269 | 61338557 | ID=Msa0366450;Name=Msa0366450 |
| chr3_1 | mRNA | 61338557 | 61339269 | 61338557 | ID=Msa0366450-mRNA-1;Parent=Msa0366450;Name=Msa0366450-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0|0|1|1|1|2|0|211 |
| chr3_1 | exon | 61338848 | 61339269 | 61338848 | ID=Msa0366450-mRNA-1:exon:11880;Parent=Msa0366450-mRNA-1 |
| chr3_1 | exon | 61338557 | 61338770 | 61338557 | ID=Msa0366450-mRNA-1:exon:11879;Parent=Msa0366450-mRNA-1 |
| chr3_1 | CDS | 61338848 | 61339269 | 61338848 | ID=Msa0366450-mRNA-1:cds;Parent=Msa0366450-mRNA-1 |
| chr3_1 | CDS | 61338557 | 61338770 | 61338557 | ID=Msa0366450-mRNA-1:cds;Parent=Msa0366450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
