Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368570 | RHN68248.1 | 81.818 | 55 | 10 | 0 | 1 | 55 | 1 | 55 | 1.01e-19 | 87.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368570 | sp|Q9FKK2|AGL62_ARATH | 74.419 | 43 | 11 | 0 | 13 | 55 | 16 | 58 | 1.13e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368570 | A0A396IUD9 | 81.818 | 55 | 10 | 0 | 1 | 55 | 1 | 55 | 4.81e-20 | 87.4 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0368570 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368570 | MtrunA17_Chr3g0111831 | 81.818 | 55 | 10 | 0 | 1 | 55 | 1 | 55 | 9.27e-24 | 87.4 |
| Msa0368570 | MtrunA17_Chr5g0419601 | 84.444 | 45 | 7 | 0 | 11 | 55 | 16 | 60 | 5.87e-21 | 84.3 |
| Msa0368570 | MtrunA17_Chr1g0149391 | 60.000 | 70 | 25 | 1 | 11 | 80 | 16 | 82 | 1.16e-19 | 80.9 |
| Msa0368570 | MtrunA17_Chr3g0111841 | 77.778 | 45 | 10 | 0 | 11 | 55 | 3 | 47 | 1.18e-19 | 76.6 |
| Msa0368570 | MtrunA17_Chr2g0317481 | 80.000 | 45 | 9 | 0 | 11 | 55 | 16 | 60 | 1.33e-19 | 80.9 |
| Msa0368570 | MtrunA17_Chr2g0317451 | 80.000 | 45 | 9 | 0 | 11 | 55 | 16 | 60 | 1.33e-19 | 80.9 |
| Msa0368570 | MtrunA17_Chr3g0099411 | 77.778 | 45 | 10 | 0 | 11 | 55 | 16 | 60 | 2.62e-19 | 79.7 |
| Msa0368570 | MtrunA17_Chr1g0206721 | 77.778 | 45 | 10 | 0 | 11 | 55 | 16 | 60 | 6.61e-19 | 79.0 |
| Msa0368570 | MtrunA17_Chr1g0206701 | 60.000 | 65 | 23 | 1 | 11 | 75 | 16 | 77 | 7.04e-19 | 79.0 |
| Msa0368570 | MtrunA17_Chr3g0099421 | 80.000 | 45 | 9 | 0 | 11 | 55 | 41 | 85 | 7.96e-19 | 79.0 |
| Msa0368570 | MtrunA17_Chr1g0206691 | 61.905 | 63 | 21 | 1 | 13 | 75 | 1 | 60 | 9.06e-19 | 78.2 |
| Msa0368570 | MtrunA17_Chr8g0355091 | 58.209 | 67 | 25 | 1 | 11 | 77 | 16 | 79 | 9.15e-19 | 78.6 |
| Msa0368570 | MtrunA17_Chr1g0187361 | 75.556 | 45 | 11 | 0 | 11 | 55 | 16 | 60 | 1.19e-18 | 78.2 |
| Msa0368570 | MtrunA17_Chr5g0422941 | 77.778 | 45 | 10 | 0 | 11 | 55 | 16 | 60 | 1.36e-18 | 78.2 |
| Msa0368570 | MtrunA17_Chr5g0422421 | 77.778 | 45 | 10 | 0 | 11 | 55 | 16 | 60 | 1.83e-18 | 77.8 |
| Msa0368570 | MtrunA17_Chr1g0188671 | 75.556 | 45 | 11 | 0 | 11 | 55 | 54 | 98 | 2.31e-18 | 78.2 |
| Msa0368570 | MtrunA17_Chr1g0206991 | 73.333 | 45 | 12 | 0 | 11 | 55 | 16 | 60 | 2.92e-18 | 76.3 |
| Msa0368570 | MtrunA17_Chr1g0187351 | 74.419 | 43 | 11 | 0 | 13 | 55 | 1 | 43 | 8.59e-18 | 72.0 |
| Msa0368570 | MtrunA17_Chr2g0292791 | 73.333 | 45 | 12 | 0 | 11 | 55 | 16 | 60 | 4.20e-17 | 74.3 |
| Msa0368570 | MtrunA17_Chr3g0089141 | 71.111 | 45 | 13 | 0 | 11 | 55 | 16 | 60 | 3.75e-16 | 71.6 |
| Msa0368570 | MtrunA17_Chr1g0208561 | 71.111 | 45 | 13 | 0 | 11 | 55 | 16 | 60 | 3.87e-16 | 71.6 |
| Msa0368570 | MtrunA17_Chr3g0111931 | 80.000 | 40 | 8 | 0 | 16 | 55 | 2 | 41 | 3.49e-15 | 66.2 |
| Msa0368570 | MtrunA17_Chr3g0089151 | 50.769 | 65 | 29 | 1 | 11 | 75 | 16 | 77 | 5.67e-15 | 66.2 |
| Msa0368570 | MtrunA17_Chr1g0208581 | 66.667 | 45 | 15 | 0 | 11 | 55 | 16 | 60 | 7.79e-15 | 68.2 |
| Msa0368570 | MtrunA17_Chr2g0300441 | 66.667 | 45 | 15 | 0 | 11 | 55 | 16 | 60 | 1.18e-14 | 67.8 |
| Msa0368570 | MtrunA17_Chr3g0119901 | 70.000 | 40 | 12 | 0 | 16 | 55 | 21 | 60 | 4.47e-14 | 65.5 |
| Msa0368570 | MtrunA17_Chr2g0325971 | 70.732 | 41 | 12 | 0 | 11 | 51 | 16 | 56 | 4.94e-14 | 65.9 |
| Msa0368570 | MtrunA17_Chr3g0085241 | 70.000 | 40 | 12 | 0 | 16 | 55 | 53 | 92 | 6.56e-14 | 65.9 |
| Msa0368570 | MtrunA17_Chr4g0018951 | 47.826 | 69 | 33 | 1 | 17 | 85 | 25 | 90 | 1.18e-13 | 63.9 |
| Msa0368570 | MtrunA17_Chr8g0379021 | 46.970 | 66 | 32 | 1 | 11 | 76 | 19 | 81 | 1.41e-13 | 63.9 |
| Msa0368570 | MtrunA17_Chr2g0300421 | 55.000 | 60 | 24 | 1 | 11 | 70 | 16 | 72 | 2.30e-13 | 63.2 |
| Msa0368570 | MtrunA17_Chr2g0333981 | 42.667 | 75 | 40 | 1 | 11 | 85 | 19 | 90 | 1.79e-12 | 60.8 |
| Msa0368570 | MtrunA17_Chr4g0071601 | 46.377 | 69 | 34 | 1 | 17 | 85 | 25 | 90 | 2.63e-12 | 60.5 |
| Msa0368570 | MtrunA17_Chr8g0357771 | 63.889 | 36 | 13 | 0 | 20 | 55 | 18 | 53 | 1.11e-11 | 58.9 |
| Msa0368570 | MtrunA17_Chr1g0169761 | 63.889 | 36 | 13 | 0 | 20 | 55 | 18 | 53 | 1.30e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368570 | AT5G60440.1 | 74.419 | 43 | 11 | 0 | 13 | 55 | 16 | 58 | 1.14e-16 | 74.3 |
| Msa0368570 | AT4G36590.1 | 66.667 | 45 | 15 | 0 | 11 | 55 | 14 | 58 | 2.38e-14 | 67.4 |
| Msa0368570 | AT1G01530.1 | 67.442 | 43 | 14 | 0 | 13 | 55 | 16 | 58 | 2.61e-14 | 67.4 |
| Msa0368570 | AT1G65360.1 | 65.116 | 43 | 15 | 0 | 13 | 55 | 16 | 58 | 7.61e-14 | 65.9 |
| Msa0368570 | AT2G24840.1 | 44.286 | 70 | 36 | 1 | 13 | 82 | 72 | 138 | 8.62e-13 | 63.2 |
Find 26 sgRNAs with CRISPR-Local
Find 410 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCTATCAAGGGATAATT+CGG | 0.336472 | 3_1:+65359692 | None:intergenic |
| ATAGCAAGAGAAGGAGTCTA+TGG | 0.360754 | 3_1:-65359677 | Msa0368570:CDS |
| GCTTCGAGAAAGTCACTTGC+AGG | 0.392864 | 3_1:-65365954 | Msa0368570:intron |
| ATTTGTCTCCGATTTGTTTG+TGG | 0.400427 | 3_1:-65359640 | Msa0368570:CDS |
| TCACCCGGATGCATCGACTA+TGG | 0.407517 | 3_1:-65359583 | Msa0368570:CDS |
| GACTCCTTCTCTTGCTATCA+AGG | 0.414977 | 3_1:+65359682 | None:intergenic |
| AACAAATCGGAGACAAATAA+AGG | 0.415110 | 3_1:+65359645 | None:intergenic |
| ACAGTATCTGAACACACAAT+TGG | 0.471225 | 3_1:+65359615 | None:intergenic |
| AATTGGTTCCACAAACAAAT+CGG | 0.490405 | 3_1:+65359632 | None:intergenic |
| GTAACCATAGTCGATGCATC+CGG | 0.511762 | 3_1:+65359579 | None:intergenic |
| CTTTCTCGAAGCGCCGCAGT+GGG | 0.517223 | 3_1:-65366529 | Msa0368570:CDS |
| ACTTTCTCGAAGCGCCGCAG+TGG | 0.564118 | 3_1:-65366530 | Msa0368570:CDS |
| TATATTCTCACCTGGTGAGA+AGG | 0.565372 | 3_1:-65366450 | Msa0368570:intron |
| GAGCAATAAAAGCAACCTGC+AGG | 0.567675 | 3_1:-65366555 | Msa0368570:CDS |
| GTCGATGCATCCGGGTGACG+AGG | 0.567910 | 3_1:+65359588 | None:intergenic |
| ACTTTCTCGAAGCGTCGTAG+TGG | 0.570157 | 3_1:+65365964 | None:intergenic |
| AGAGAAGGAGTCTATGGAGT+AGG | 0.570845 | 3_1:-65359671 | Msa0368570:CDS |
| GCTTCGAGAAAGTCACCTGC+AGG | 0.571702 | 3_1:+65366540 | None:intergenic |
| TAACCATAGTCGATGCATCC+GGG | 0.574175 | 3_1:+65359580 | None:intergenic |
| ACTCCTTCTCTTGCTATCAA+GGG | 0.589382 | 3_1:+65359683 | None:intergenic |
| GCTCTAATTATATTCTCACC+TGG | 0.609848 | 3_1:-65366458 | Msa0368570:CDS |
| AATGAAAATACCTTCTCACC+AGG | 0.623617 | 3_1:+65366440 | None:intergenic |
| AGCAACATATGCACCACAGA+GGG | 0.625524 | 3_1:+65366478 | None:intergenic |
| TATCCCTTGATAGCAAGAGA+AGG | 0.646648 | 3_1:-65359686 | Msa0368570:CDS |
| GAGCAACATATGCACCACAG+AGG | 0.750197 | 3_1:+65366477 | None:intergenic |
| CTTTCGTGAAGAGCCCACTG+CGG | 0.762759 | 3_1:+65366516 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAATAATGTAATAAATTAA+AGG | + | chr3_1:65361617-65361636 | None:intergenic | 10.0% |
| !! | AATTAAATTAATAACATTGT+CGG | - | chr3_1:65362084-65362103 | Msa0368570:intron | 10.0% |
| !!! | GTTAATTTGAATAAAATTAA+AGG | - | chr3_1:65362283-65362302 | Msa0368570:intron | 10.0% |
| !! | TTGAAAAAAAAAATGTTAAT+TGG | + | chr3_1:65362792-65362811 | None:intergenic | 10.0% |
| !!! | TTTTTAAAAGTTGTAATAAA+CGG | + | chr3_1:65363617-65363636 | None:intergenic | 10.0% |
| !!! | AGAAAATAATTTAGTTTATT+TGG | + | chr3_1:65363797-65363816 | None:intergenic | 10.0% |
| !!! | AATTTTTTTCAAGTTATATA+AGG | - | chr3_1:65366196-65366215 | Msa0368570:intron | 10.0% |
| !! | TATATAAAAATTAATGAGTG+TGG | - | chr3_1:65360700-65360719 | Msa0368570:intron | 15.0% |
| !! | GAACTATATATTTGTAATTT+AGG | - | chr3_1:65360884-65360903 | Msa0368570:intron | 15.0% |
| !!! | AAACTAATTTTTGAATAACA+AGG | + | chr3_1:65361132-65361151 | None:intergenic | 15.0% |
| !!! | ATTTTATAAAATTGACTACT+AGG | + | chr3_1:65361158-65361177 | None:intergenic | 15.0% |
| !!! | CATAATTTTAATTTATTGCA+TGG | + | chr3_1:65361197-65361216 | None:intergenic | 15.0% |
| !!! | TTTTTTATATGGAATTTGTT+AGG | - | chr3_1:65361412-65361431 | Msa0368570:intron | 15.0% |
| !! | CGTAACAAAATTAATAAATA+AGG | - | chr3_1:65361498-65361517 | Msa0368570:intron | 15.0% |
| !! | GAAAATGAAATTAATGATAA+AGG | + | chr3_1:65361907-65361926 | None:intergenic | 15.0% |
| !! | ATTAATAAAAATAAGCAGAA+AGG | + | chr3_1:65362063-65362082 | None:intergenic | 15.0% |
| !!! | ACTTGCTAATATTTTTTAAA+GGG | + | chr3_1:65362524-65362543 | None:intergenic | 15.0% |
| !!! | AACTTGCTAATATTTTTTAA+AGG | + | chr3_1:65362525-65362544 | None:intergenic | 15.0% |
| !!! | TAAAAAATATTAGCAAGTTT+TGG | - | chr3_1:65362526-65362545 | Msa0368570:intron | 15.0% |
| !!! | TTTTGCATATTTTTTTTTTG+TGG | + | chr3_1:65363933-65363952 | None:intergenic | 15.0% |
| !! | GAATGAATATGTTAATTAAT+TGG | + | chr3_1:65364887-65364906 | None:intergenic | 15.0% |
| !! | TAACATATTCATTCATTAAT+CGG | - | chr3_1:65364893-65364912 | Msa0368570:intron | 15.0% |
| !!! | TTTAAAAATTAGTTTTGTTC+AGG | - | chr3_1:65365178-65365197 | Msa0368570:intron | 15.0% |
| !!! | TTAAAAATTAGTTTTGTTCA+GGG | - | chr3_1:65365179-65365198 | Msa0368570:intron | 15.0% |
| !!! | TATCTGCTATTTAAATTTAA+TGG | - | chr3_1:65365587-65365606 | Msa0368570:intron | 15.0% |
| !! | TTGAAAAAAATTGAATTGAA+GGG | + | chr3_1:65366188-65366207 | None:intergenic | 15.0% |
| !! | TTCTTGAATAATTCAAAAGT+TGG | - | chr3_1:65359926-65359945 | Msa0368570:intron | 20.0% |
| !! | ATAATATTCATCATACCAAT+GGG | - | chr3_1:65359949-65359968 | Msa0368570:intron | 20.0% |
| !! | AAGAAATTACACATTGTAAT+TGG | - | chr3_1:65360393-65360412 | Msa0368570:intron | 20.0% |
| !! | AGAAATTACACATTGTAATT+GGG | - | chr3_1:65360394-65360413 | Msa0368570:intron | 20.0% |
| !! | AATATTTCAATGTAACGAAA+AGG | + | chr3_1:65360473-65360492 | None:intergenic | 20.0% |
| !!! | TTGATACATTAAACACTTTT+TGG | - | chr3_1:65360954-65360973 | Msa0368570:intron | 20.0% |
| !!! | CTTTCATTTTTCATTAAACT+TGG | + | chr3_1:65361000-65361019 | None:intergenic | 20.0% |
| !! | TCTTAAAAAAAAAAGGCAAA+CGG | - | chr3_1:65361361-65361380 | Msa0368570:intron | 20.0% |
| !! | ACAATGTAACCAAAAAAAAT+GGG | - | chr3_1:65361644-65361663 | Msa0368570:intron | 20.0% |
| !! | CCACTTTAGATAAAATTTAA+GGG | + | chr3_1:65361747-65361766 | None:intergenic | 20.0% |
| !!! | CTAGAGTTTTATTTAACAAA+TGG | + | chr3_1:65362452-65362471 | None:intergenic | 20.0% |
| !! | AGTTTGAAAAACATGTTAAT+TGG | + | chr3_1:65362897-65362916 | None:intergenic | 20.0% |
| !! | CAAAGAAATATGATTAAACA+AGG | - | chr3_1:65363009-65363028 | Msa0368570:intron | 20.0% |
| !!! | TTTAATCCTTACTTTTTTGT+GGG | + | chr3_1:65363135-65363154 | None:intergenic | 20.0% |
| !!! | TTTTAATCCTTACTTTTTTG+TGG | + | chr3_1:65363136-65363155 | None:intergenic | 20.0% |
| !! | TTAAAATAACAGAGGTTAAA+CGG | - | chr3_1:65363150-65363169 | Msa0368570:intron | 20.0% |
| !! | TTGGATACAACTATATAAAA+GGG | + | chr3_1:65363778-65363797 | None:intergenic | 20.0% |
| !! | TTTGGATACAACTATATAAA+AGG | + | chr3_1:65363779-65363798 | None:intergenic | 20.0% |
| !!! | CAAACAATTGACTTTTATTA+TGG | - | chr3_1:65363817-65363836 | Msa0368570:intron | 20.0% |
| !!! | CTATTTTGCATTTTTTTTTG+TGG | + | chr3_1:65364032-65364051 | None:intergenic | 20.0% |
| !! | CTCAATCCTAAATAAAATTA+AGG | + | chr3_1:65364140-65364159 | None:intergenic | 20.0% |
| !! | AAATAAATCTCAAACATCTT+TGG | - | chr3_1:65364501-65364520 | Msa0368570:intron | 20.0% |
| !! | TGTTTGTACAAAAAATATAG+TGG | - | chr3_1:65365470-65365489 | Msa0368570:intron | 20.0% |
| !! | GTTTGTACAAAAAATATAGT+GGG | - | chr3_1:65365471-65365490 | Msa0368570:intron | 20.0% |
| !!! | TGCTATTTAAATTTAATGGT+GGG | - | chr3_1:65365591-65365610 | Msa0368570:intron | 20.0% |
| !!! | TTTTTTTTTGACCGAAAATT+TGG | - | chr3_1:65365677-65365696 | Msa0368570:intron | 20.0% |
| !!! | TTTTTTTTGACCGAAAATTT+GGG | - | chr3_1:65365678-65365697 | Msa0368570:intron | 20.0% |
| !!! | TATTATAAACCCCAAATTTT+CGG | + | chr3_1:65365691-65365710 | None:intergenic | 20.0% |
| !! | TTGTATATTAATCAATACTG+AGG | - | chr3_1:65365830-65365849 | Msa0368570:intron | 20.0% |
| !! | TATAAAATTGCATGTATTCA+AGG | - | chr3_1:65365866-65365885 | Msa0368570:intron | 20.0% |
| !!! | AATGTTTATACCTAACTTTT+TGG | - | chr3_1:65366018-65366037 | Msa0368570:intron | 20.0% |
| !! | TGAAAAAAATTGAATTGAAG+GGG | + | chr3_1:65366187-65366206 | None:intergenic | 20.0% |
| !! | CTTGAAAAAAATTGAATTGA+AGG | + | chr3_1:65366189-65366208 | None:intergenic | 20.0% |
| !! | ACTGAAAAATGAAATTTCTT+TGG | + | chr3_1:65366350-65366369 | None:intergenic | 20.0% |
| ! | GATAATATTCATCATACCAA+TGG | - | chr3_1:65359948-65359967 | Msa0368570:intron | 25.0% |
| ! | TTTATGACTGTTTCAACATT+TGG | - | chr3_1:65360080-65360099 | Msa0368570:intron | 25.0% |
| ! | CGTTACATTGAAATATTTAC+TGG | - | chr3_1:65360476-65360495 | Msa0368570:intron | 25.0% |
| !! | TCATCAAATCTCTTTTAACA+TGG | - | chr3_1:65360511-65360530 | Msa0368570:intron | 25.0% |
| ! | CCAAATACAATTTATCAAAC+AGG | + | chr3_1:65360636-65360655 | None:intergenic | 25.0% |
| ! | CCTGTTTGATAAATTGTATT+TGG | - | chr3_1:65360633-65360652 | Msa0368570:intron | 25.0% |
| ! | TTCATTAAACTTGGTCAAAA+AGG | + | chr3_1:65360991-65361010 | None:intergenic | 25.0% |
| !! | ACGGGTTAAAGATTATTTAT+TGG | + | chr3_1:65361313-65361332 | None:intergenic | 25.0% |
| !!! | GTGCAATGCATTTTTTTATA+TGG | - | chr3_1:65361401-65361420 | Msa0368570:intron | 25.0% |
| ! | GACAATGTAACCAAAAAAAA+TGG | - | chr3_1:65361643-65361662 | Msa0368570:intron | 25.0% |
| !!! | TGTGATTTTCCCATTTTTTT+TGG | + | chr3_1:65361656-65361675 | None:intergenic | 25.0% |
| ! | TGTTTAATTGAAAACTAGAG+CGG | + | chr3_1:65361717-65361736 | None:intergenic | 25.0% |
| ! | CTTTAGATAAAATTTAAGGG+AGG | + | chr3_1:65361744-65361763 | None:intergenic | 25.0% |
| !! | CCCTTAAATTTTATCTAAAG+TGG | - | chr3_1:65361744-65361763 | Msa0368570:intron | 25.0% |
| !! | GCCACTTTAGATAAAATTTA+AGG | + | chr3_1:65361748-65361767 | None:intergenic | 25.0% |
| ! | AGTAACAGTGTTAATCAAAA+GGG | + | chr3_1:65361779-65361798 | None:intergenic | 25.0% |
| ! | AAGTAACAGTGTTAATCAAA+AGG | + | chr3_1:65361780-65361799 | None:intergenic | 25.0% |
| ! | AATAAAAATAAGCAGAAAGG+AGG | + | chr3_1:65362060-65362079 | None:intergenic | 25.0% |
| ! | GAAAATCAACAGTGATTTAA+CGG | - | chr3_1:65362237-65362256 | Msa0368570:intron | 25.0% |
| !! | ATTTAACGGTGTTAATTGAA+AGG | - | chr3_1:65362251-65362270 | Msa0368570:intron | 25.0% |
| !! | TTTAACGGTGTTAATTGAAA+GGG | - | chr3_1:65362252-65362271 | Msa0368570:intron | 25.0% |
| !!! | ATTTAACAAATGGATTGACT+AGG | + | chr3_1:65362442-65362461 | None:intergenic | 25.0% |
| !! | AATGTTTTTCGTTACTTCTT+TGG | - | chr3_1:65362556-65362575 | Msa0368570:intron | 25.0% |
| ! | ATCATATATGAACATCAAAC+AGG | + | chr3_1:65362619-65362638 | None:intergenic | 25.0% |
| ! | GAAAAACATGTTAATTGGAA+AGG | + | chr3_1:65362892-65362911 | None:intergenic | 25.0% |
| ! | TCTATGATGCATGTTAAATT+GGG | + | chr3_1:65362932-65362951 | None:intergenic | 25.0% |
| ! | TTCTATGATGCATGTTAAAT+TGG | + | chr3_1:65362933-65362952 | None:intergenic | 25.0% |
| ! | ATGATTAAACAAGGACAATA+AGG | - | chr3_1:65363018-65363037 | Msa0368570:intron | 25.0% |
| ! | TAGGATTGAAAAATCTTTCT+TGG | + | chr3_1:65363100-65363119 | None:intergenic | 25.0% |
| ! | AGTAAGGATTAAAATAACAG+AGG | - | chr3_1:65363142-65363161 | Msa0368570:intron | 25.0% |
| ! | TAAAATAACAGAGGTTAAAC+GGG | - | chr3_1:65363151-65363170 | Msa0368570:intron | 25.0% |
| ! | GTAAGGATTAAAATGATCAA+TGG | + | chr3_1:65363211-65363230 | None:intergenic | 25.0% |
| !! | GATGAGAAGACATTTTTATT+TGG | - | chr3_1:65363233-65363252 | Msa0368570:intron | 25.0% |
| !! | TTGCATTATGTCATTGTTTT+GGG | + | chr3_1:65363307-65363326 | None:intergenic | 25.0% |
| !! | ATTGCATTATGTCATTGTTT+TGG | + | chr3_1:65363308-65363327 | None:intergenic | 25.0% |
| !!! | AAGAATGATGTTCATTTTTG+TGG | - | chr3_1:65363437-65363456 | Msa0368570:intron | 25.0% |
| ! | TGGATACAACTATATAAAAG+GGG | + | chr3_1:65363777-65363796 | None:intergenic | 25.0% |
| !!! | TGCATATTTTTTTTTTGTGG+TGG | + | chr3_1:65363930-65363949 | None:intergenic | 25.0% |
| !!! | TTTTGCATTTTTTTTTGTGG+TGG | + | chr3_1:65364029-65364048 | None:intergenic | 25.0% |
| !!! | TATTTTAATCCGTAACAAAC+AGG | - | chr3_1:65364113-65364132 | Msa0368570:intron | 25.0% |
| !!! | ACAGGTCCTTAATTTTATTT+AGG | - | chr3_1:65364131-65364150 | Msa0368570:intron | 25.0% |
| !! | GAAACAGATTTTTGAACTTA+TGG | + | chr3_1:65364330-65364349 | None:intergenic | 25.0% |
| ! | AAAAGTTAAACCCTAGAATT+AGG | - | chr3_1:65364572-65364591 | Msa0368570:intron | 25.0% |
| ! | CAAGTAATATTTCCAACTAA+AGG | + | chr3_1:65364649-65364668 | None:intergenic | 25.0% |
| ! | AGCTAAAATGATCATAAGAA+TGG | + | chr3_1:65364696-65364715 | None:intergenic | 25.0% |
| ! | TCATTGTAAAAACTACAACT+CGG | + | chr3_1:65364750-65364769 | None:intergenic | 25.0% |
| !!! | GAACCTGTTTTTCATAAATA+TGG | - | chr3_1:65364982-65365001 | Msa0368570:intron | 25.0% |
| !!! | CTGTTTTTCATAAATATGGT+GGG | - | chr3_1:65364986-65365005 | Msa0368570:intron | 25.0% |
| !!! | ATTTCATCTCTAAAGTTGTT+TGG | + | chr3_1:65365034-65365053 | None:intergenic | 25.0% |
| ! | ATTCACAGATACTTAGTTAT+TGG | - | chr3_1:65365052-65365071 | Msa0368570:intron | 25.0% |
| ! | TTCACAGATACTTAGTTATT+GGG | - | chr3_1:65365053-65365072 | Msa0368570:intron | 25.0% |
| ! | CATAAGAATGAAAAATGAGA+AGG | + | chr3_1:65365139-65365158 | None:intergenic | 25.0% |
| !!! | TGTTTTGAATTCTCCAAAAT+AGG | - | chr3_1:65365279-65365298 | Msa0368570:intron | 25.0% |
| !!! | AATTTGAAACAAGCCTATTT+TGG | + | chr3_1:65365295-65365314 | None:intergenic | 25.0% |
| !! | CTGCTATTTAAATTTAATGG+TGG | - | chr3_1:65365590-65365609 | Msa0368570:intron | 25.0% |
| !!! | TTTTTTTGACCGAAAATTTG+GGG | - | chr3_1:65365679-65365698 | Msa0368570:intron | 25.0% |
| ! | AAGTAGTATGCATATGAATA+CGG | - | chr3_1:65365725-65365744 | Msa0368570:intron | 25.0% |
| ! | TTAGTAATTCGATACAAGTT+AGG | - | chr3_1:65365796-65365815 | Msa0368570:intron | 25.0% |
| !!! | AGATTATTACTCTAAGATTG+TGG | + | chr3_1:65366057-65366076 | None:intergenic | 25.0% |
| ! | TTTGTTGAATCACTTCAAAT+TGG | - | chr3_1:65366105-65366124 | Msa0368570:intron | 25.0% |
| ! | TTGTTGAATCACTTCAAATT+GGG | - | chr3_1:65366106-65366125 | Msa0368570:intron | 25.0% |
| ! | ACAGATACACTTGATATTAA+TGG | - | chr3_1:65366227-65366246 | Msa0368570:intron | 25.0% |
| ! | AGTTTAATTCCTCAAATAGT+TGG | - | chr3_1:65366385-65366404 | Msa0368570:intron | 25.0% |
| ! | GTTTAATTCCTCAAATAGTT+GGG | - | chr3_1:65366386-65366405 | Msa0368570:intron | 25.0% |
| GCTCTAATTATATTCTCATC+TGG | + | chr3_1:65360131-65360150 | None:intergenic | 30.0% | |
| ! | CTCTTTTAACATGGCTTATA+TGG | - | chr3_1:65360520-65360539 | Msa0368570:intron | 30.0% |
| TCCTTTACAAACAATGTAGT+AGG | - | chr3_1:65360741-65360760 | Msa0368570:intron | 30.0% | |
| ACCTACTACATTGTTTGTAA+AGG | + | chr3_1:65360745-65360764 | None:intergenic | 30.0% | |
| !! | GGTTTATTACTCACTTTTGT+AGG | - | chr3_1:65360762-65360781 | Msa0368570:intron | 30.0% |
| CAACGACATTGTAAATCAAT+TGG | + | chr3_1:65360862-65360881 | None:intergenic | 30.0% | |
| TACCATATCAATGATCTTAC+GGG | + | chr3_1:65361331-65361350 | None:intergenic | 30.0% | |
| CTACCATATCAATGATCTTA+CGG | + | chr3_1:65361332-65361351 | None:intergenic | 30.0% | |
| AAAAAAAAAGGCAAACGGAT+AGG | - | chr3_1:65361366-65361385 | Msa0368570:intron | 30.0% | |
| AACCTAATAAAGCAAATGAG+CGG | - | chr3_1:65361448-65361467 | Msa0368570:intron | 30.0% | |
| !!! | TGTTTTTTATGTAAACCTCC+GGG | + | chr3_1:65361687-65361706 | None:intergenic | 30.0% |
| !!! | GTGTTTTTTATGTAAACCTC+CGG | + | chr3_1:65361688-65361707 | None:intergenic | 30.0% |
| GTTTAATTGAAAACTAGAGC+GGG | + | chr3_1:65361716-65361735 | None:intergenic | 30.0% | |
| AGATAAAATTTAAGGGAGGT+TGG | + | chr3_1:65361740-65361759 | None:intergenic | 30.0% | |
| !! | TTTTCCTGCTTTTGCAATTT+GGG | - | chr3_1:65361837-65361856 | Msa0368570:intron | 30.0% |
| ! | TTGCAATTTGGGAAATTTTC+AGG | - | chr3_1:65361848-65361867 | Msa0368570:intron | 30.0% |
| ! | TGCAATTTGGGAAATTTTCA+GGG | - | chr3_1:65361849-65361868 | Msa0368570:intron | 30.0% |
| ! | GAATGACAAAAAGTGTATGA+AGG | - | chr3_1:65362204-65362223 | Msa0368570:intron | 30.0% |
| !!! | AGTGTTTTTTAAGCAAACCT+TGG | - | chr3_1:65362342-65362361 | Msa0368570:intron | 30.0% |
| !!! | GTGTTTTTTAAGCAAACCTT+GGG | - | chr3_1:65362343-65362362 | Msa0368570:intron | 30.0% |
| !!! | TGTTTTTTAAGCAAACCTTG+GGG | - | chr3_1:65362344-65362363 | Msa0368570:intron | 30.0% |
| !! | GCTTAATTTGTTACTGAACA+TGG | - | chr3_1:65362413-65362432 | Msa0368570:intron | 30.0% |
| GTGTACATCAAACATATGAT+AGG | + | chr3_1:65362747-65362766 | None:intergenic | 30.0% | |
| CTATGATGCATGTTAAATTG+GGG | + | chr3_1:65362931-65362950 | None:intergenic | 30.0% | |
| ! | TTGTGGGTTACAAGTTTAAT+AGG | + | chr3_1:65363119-65363138 | None:intergenic | 30.0% |
| TTGTAACCCACAAAAAAGTA+AGG | - | chr3_1:65363126-65363145 | Msa0368570:intron | 30.0% | |
| AAATGTCTTCTCATCAAGTA+AGG | + | chr3_1:65363228-65363247 | None:intergenic | 30.0% | |
| TTATGACCGTTTCAACATTT+GGG | + | chr3_1:65363262-65363281 | None:intergenic | 30.0% | |
| TTTATGACCGTTTCAACATT+TGG | + | chr3_1:65363263-65363282 | None:intergenic | 30.0% | |
| !! | TGCATTATGTCATTGTTTTG+GGG | + | chr3_1:65363306-65363325 | None:intergenic | 30.0% |
| TGACATAATGCAATTCATTG+AGG | - | chr3_1:65363314-65363333 | Msa0368570:intron | 30.0% | |
| !!! | GTATTTTGTTTTCTGTCCAA+TGG | + | chr3_1:65363464-65363483 | None:intergenic | 30.0% |
| TTTAGAGGAGAGAGAAAATA+TGG | - | chr3_1:65363718-65363737 | Msa0368570:intron | 30.0% | |
| TTAGAGGAGAGAGAAAATAT+GGG | - | chr3_1:65363719-65363738 | Msa0368570:intron | 30.0% | |
| TTAGCTTAACTCAGTTAGTT+TGG | - | chr3_1:65363863-65363882 | Msa0368570:intron | 30.0% | |
| GACAATGCATAATATATGCA+AGG | - | chr3_1:65363885-65363904 | Msa0368570:intron | 30.0% | |
| !!! | TTTTTTTTTTGTGGTGGTCA+GGG | + | chr3_1:65363924-65363943 | None:intergenic | 30.0% |
| !!! | ATTTTTTTTTTGTGGTGGTC+AGG | + | chr3_1:65363925-65363944 | None:intergenic | 30.0% |
| GACAATGCATAAAATATGCA+AGG | - | chr3_1:65363984-65364003 | Msa0368570:intron | 30.0% | |
| ! | AATTAAGGACCTGTTTGTTA+CGG | + | chr3_1:65364125-65364144 | None:intergenic | 30.0% |
| TATCCTAACCTAATTTGAGA+TGG | + | chr3_1:65364189-65364208 | None:intergenic | 30.0% | |
| ATCTCAAATTAGGTTAGGAT+AGG | - | chr3_1:65364188-65364207 | Msa0368570:intron | 30.0% | |
| TGTGAAGTTAAACCTTTAGT+TGG | - | chr3_1:65364634-65364653 | Msa0368570:intron | 30.0% | |
| AATGGAAAATCAGAATGTTC+TGG | + | chr3_1:65364678-65364697 | None:intergenic | 30.0% | |
| TAATTGCGTTAGACTTAGTT+TGG | - | chr3_1:65364930-65364949 | Msa0368570:intron | 30.0% | |
| TTTATGAAAAACAGGTTCAG+TGG | + | chr3_1:65364980-65364999 | None:intergenic | 30.0% | |
| CCACCATATTTATGAAAAAC+AGG | + | chr3_1:65364988-65365007 | None:intergenic | 30.0% | |
| !! | CCTGTTTTTCATAAATATGG+TGG | - | chr3_1:65364985-65365004 | Msa0368570:intron | 30.0% |
| !! | TTTCATAAATATGGTGGGTT+TGG | - | chr3_1:65364991-65365010 | Msa0368570:intron | 30.0% |
| TTTGATAGATCTATCACTGT+AGG | + | chr3_1:65365090-65365109 | None:intergenic | 30.0% | |
| ATGAAAAATGAGAAGGTTGA+GGG | + | chr3_1:65365132-65365151 | None:intergenic | 30.0% | |
| AATGAAAAATGAGAAGGTTG+AGG | + | chr3_1:65365133-65365152 | None:intergenic | 30.0% | |
| !! | ATAGTGGGTTATGTTGTAAT+TGG | - | chr3_1:65365486-65365505 | Msa0368570:intron | 30.0% |
| !! | TAGTGGGTTATGTTGTAATT+GGG | - | chr3_1:65365487-65365506 | Msa0368570:intron | 30.0% |
| ACAAATAAGAAACTGTGAGA+TGG | + | chr3_1:65365564-65365583 | None:intergenic | 30.0% | |
| TTAATCAATACTGAGGTATG+CGG | - | chr3_1:65365837-65365856 | Msa0368570:intron | 30.0% | |
| !! | AAGTATTGATCCTGAGAATT+TGG | - | chr3_1:65365905-65365924 | Msa0368570:intron | 30.0% |
| CATTCAACTTCCAAAAAGTT+AGG | + | chr3_1:65366031-65366050 | None:intergenic | 30.0% | |
| ACATTGAATGGAAACATTTG+TGG | - | chr3_1:65366134-65366153 | Msa0368570:intron | 30.0% | |
| AGAATGGATGAAGTAAAAAC+AGG | - | chr3_1:65366426-65366445 | Msa0368570:intron | 30.0% | |
| ! | GATGAAGTAAAAACAGGTTT+TGG | - | chr3_1:65366432-65366451 | Msa0368570:intron | 30.0% |
| AACAAATCGGAGACAAATAA+AGG | + | chr3_1:65366523-65366542 | None:intergenic | 30.0% | |
| ! | AATTGGTTCCACAAACAAAT+CGG | + | chr3_1:65366536-65366555 | None:intergenic | 30.0% |
| GCTCTAATTATATTCTCACC+TGG | - | chr3_1:65359707-65359726 | Msa0368570:intron | 35.0% | |
| AATGAAAATACCTTCTCACC+AGG | + | chr3_1:65359728-65359747 | None:intergenic | 35.0% | |
| !!! | GGTGAGAAGGTATTTTCATT+TGG | - | chr3_1:65359728-65359747 | Msa0368570:intron | 35.0% |
| TTTATGACCGTTTCAACACT+TGG | + | chr3_1:65359758-65359777 | None:intergenic | 35.0% | |
| ATCATATTCGACCCATCAAT+GGG | + | chr3_1:65359883-65359902 | None:intergenic | 35.0% | |
| ! | TTTTTGTAGACTCTTCCCAT+TGG | + | chr3_1:65359967-65359986 | None:intergenic | 35.0% |
| ! | TTGCATCATGCCATTGTTTT+AGG | - | chr3_1:65360034-65360053 | Msa0368570:intron | 35.0% |
| !! | TGCATCATGCCATTGTTTTA+GGG | - | chr3_1:65360035-65360054 | Msa0368570:intron | 35.0% |
| CATAAATCGTTATCTCTCTC+AGG | + | chr3_1:65360066-65360085 | None:intergenic | 35.0% | |
| GGTGAGAAGGTAATTTCATT+TGG | + | chr3_1:65360110-65360129 | None:intergenic | 35.0% | |
| TATATTCTCATCTGGTGAGA+AGG | + | chr3_1:65360123-65360142 | None:intergenic | 35.0% | |
| AGCAACATATGCACCATAAA+AGG | - | chr3_1:65360148-65360167 | Msa0368570:intron | 35.0% | |
| GCAACATATGCACCATAAAA+GGG | - | chr3_1:65360149-65360168 | Msa0368570:intron | 35.0% | |
| AGAGAGAGAGAGAGAAATAT+GGG | - | chr3_1:65360347-65360366 | Msa0368570:intron | 35.0% | |
| ACATTGTAATTGGGTGTGAA+GGG | - | chr3_1:65360403-65360422 | Msa0368570:intron | 35.0% | |
| !! | ATAAATCCTAGTCTTGAGAG+CGG | + | chr3_1:65360798-65360817 | None:intergenic | 35.0% |
| CTCTCAAGACTAGGATTTAT+AGG | - | chr3_1:65360798-65360817 | Msa0368570:intron | 35.0% | |
| ATATTGCAACCATCTCATAG+TGG | + | chr3_1:65361069-65361088 | None:intergenic | 35.0% | |
| AACCCGTAAGATCATTGATA+TGG | - | chr3_1:65361326-65361345 | Msa0368570:intron | 35.0% | |
| CAAACGGATAGGAATGAAAT+TGG | - | chr3_1:65361377-65361396 | Msa0368570:intron | 35.0% | |
| ACCTAATAAAGCAAATGAGC+GGG | - | chr3_1:65361449-65361468 | Msa0368570:intron | 35.0% | |
| CAAATGAGCGGGAAAAAATT+AGG | - | chr3_1:65361460-65361479 | Msa0368570:intron | 35.0% | |
| !!! | GTTTTTTATGTAAACCTCCG+GGG | + | chr3_1:65361686-65361705 | None:intergenic | 35.0% |
| AACAGTGTTAATCAAAAGGG+AGG | + | chr3_1:65361776-65361795 | None:intergenic | 35.0% | |
| !! | CTTTTCCTGCTTTTGCAATT+TGG | - | chr3_1:65361836-65361855 | Msa0368570:intron | 35.0% |
| ATTTCCCAAATTGCAAAAGC+AGG | + | chr3_1:65361844-65361863 | None:intergenic | 35.0% | |
| AATCTAGAGATTGAAACGTG+AGG | - | chr3_1:65361968-65361987 | Msa0368570:intron | 35.0% | |
| ! | TATTACATGGTGATGCAAGA+GGG | + | chr3_1:65362021-65362040 | None:intergenic | 35.0% |
| AGTGTGTAGTTGAAAACTAG+AGG | - | chr3_1:65362312-65362331 | Msa0368570:intron | 35.0% | |
| GTGTGTAGTTGAAAACTAGA+GGG | - | chr3_1:65362313-65362332 | Msa0368570:intron | 35.0% | |
| TGTGTAGTTGAAAACTAGAG+GGG | - | chr3_1:65362314-65362333 | Msa0368570:intron | 35.0% | |
| !!! | GTTTTTTAAGCAAACCTTGG+GGG | - | chr3_1:65362345-65362364 | Msa0368570:intron | 35.0% |
| !!! | CCATACGCGTTTTTTTTGTT+GGG | + | chr3_1:65362386-65362405 | None:intergenic | 35.0% |
| ATCAAACTGTGTGTATCTCT+CGG | - | chr3_1:65362591-65362610 | Msa0368570:intron | 35.0% | |
| CACGTATCATATCTTACGTT+TGG | - | chr3_1:65362686-65362705 | Msa0368570:intron | 35.0% | |
| !! | GTTTTGTTGCCATGCAAATT+GGG | + | chr3_1:65363189-65363208 | None:intergenic | 35.0% |
| !!! | TTATGTCATTGTTTTGGGGT+GGG | + | chr3_1:65363302-65363321 | None:intergenic | 35.0% |
| !!! | ATTATGTCATTGTTTTGGGG+TGG | + | chr3_1:65363303-65363322 | None:intergenic | 35.0% |
| ACAAAATCTGAACGATGTAC+TGG | - | chr3_1:65363370-65363389 | Msa0368570:intron | 35.0% | |
| !! | TGTTCATTTTTGTGGACCAT+TGG | - | chr3_1:65363445-65363464 | Msa0368570:intron | 35.0% |
| TGCATAATATATGCAAGGTC+TGG | - | chr3_1:65363890-65363909 | Msa0368570:intron | 35.0% | |
| GCATAATATATGCAAGGTCT+GGG | - | chr3_1:65363891-65363910 | Msa0368570:intron | 35.0% | |
| CATAATATATGCAAGGTCTG+GGG | - | chr3_1:65363892-65363911 | Msa0368570:intron | 35.0% | |
| TGCATAAAATATGCAAGGTC+CGG | - | chr3_1:65363989-65364008 | Msa0368570:intron | 35.0% | |
| !!! | ATTTTTTTTTGTGGTGGTCG+GGG | + | chr3_1:65364023-65364042 | None:intergenic | 35.0% |
| !!! | CATTTTTTTTTGTGGTGGTC+GGG | + | chr3_1:65364024-65364043 | None:intergenic | 35.0% |
| !!! | GCATTTTTTTTTGTGGTGGT+CGG | + | chr3_1:65364025-65364044 | None:intergenic | 35.0% |
| TATTCCCTCCATCTCAAATT+AGG | - | chr3_1:65364178-65364197 | Msa0368570:intron | 35.0% | |
| ! | CTAACCTAATTTGAGATGGA+GGG | + | chr3_1:65364185-65364204 | None:intergenic | 35.0% |
| TCAAATTAGGTTAGGATAGG+AGG | - | chr3_1:65364191-65364210 | Msa0368570:intron | 35.0% | |
| TTCAACACCTGAAGAGAAAA+GGG | + | chr3_1:65364414-65364433 | None:intergenic | 35.0% | |
| TTTCAACACCTGAAGAGAAA+AGG | + | chr3_1:65364415-65364434 | None:intergenic | 35.0% | |
| AGTTAAACCCTAGAATTAGG+TGG | - | chr3_1:65364575-65364594 | Msa0368570:intron | 35.0% | |
| TAGAGAACCACCTAATTCTA+GGG | + | chr3_1:65364585-65364604 | None:intergenic | 35.0% | |
| ATAGAGAACCACCTAATTCT+AGG | + | chr3_1:65364586-65364605 | None:intergenic | 35.0% | |
| CTAAGTCTAACGCAATTATG+TGG | + | chr3_1:65364928-65364947 | None:intergenic | 35.0% | |
| TGAAAAATGAGAAGGTTGAG+GGG | + | chr3_1:65365131-65365150 | None:intergenic | 35.0% | |
| AATCCAGTTTGGTTAGGTTA+GGG | + | chr3_1:65365319-65365338 | None:intergenic | 35.0% | |
| !! | TATGCCTGATTAGTTTACTC+AGG | - | chr3_1:65365360-65365379 | Msa0368570:intron | 35.0% |
| CTTACCTGAGTAAACTAATC+AGG | + | chr3_1:65365367-65365386 | None:intergenic | 35.0% | |
| !! | GATTAGTTTACTCAGGTAAG+CGG | - | chr3_1:65365367-65365386 | Msa0368570:intron | 35.0% |
| ! | ATTAGTTTACTCAGGTAAGC+GGG | - | chr3_1:65365368-65365387 | Msa0368570:intron | 35.0% |
| ACTTGGCGTAGAATCTTATT+TGG | - | chr3_1:65365402-65365421 | Msa0368570:intron | 35.0% | |
| ! | GCGTAGAATCTTATTTGGTT+AGG | - | chr3_1:65365407-65365426 | Msa0368570:intron | 35.0% |
| TTGTACAAACACATGTTCAG+TGG | + | chr3_1:65365461-65365480 | None:intergenic | 35.0% | |
| ATGCATATGAATACGGTGTT+TGG | - | chr3_1:65365732-65365751 | Msa0368570:intron | 35.0% | |
| TAATCAATACTGAGGTATGC+GGG | - | chr3_1:65365838-65365857 | Msa0368570:intron | 35.0% | |
| ACTCCAAGATAACACTGTAA+TGG | + | chr3_1:65365950-65365969 | None:intergenic | 35.0% | |
| AATTGGGATGTGACATTGAA+TGG | - | chr3_1:65366122-65366141 | Msa0368570:intron | 35.0% | |
| ! | CTTGCTATCAAGGGATAATT+CGG | + | chr3_1:65366476-65366495 | None:intergenic | 35.0% |
| ! | ATTTGTCTCCGATTTGTTTG+TGG | - | chr3_1:65366525-65366544 | Msa0368570:CDS | 35.0% |
| ACAGTATCTGAACACACAAT+TGG | + | chr3_1:65366553-65366572 | None:intergenic | 35.0% | |
| TATATTCTCACCTGGTGAGA+AGG | - | chr3_1:65359715-65359734 | Msa0368570:intron | 40.0% | |
| !! | TGGTCAACCAAGTGTTGAAA+CGG | - | chr3_1:65359748-65359767 | Msa0368570:intron | 40.0% |
| CAGTTTCCACCCTAAAACAA+TGG | - | chr3_1:65359791-65359810 | Msa0368570:intron | 40.0% | |
| !! | TGCATCACGCCATTGTTTTA+GGG | + | chr3_1:65359803-65359822 | None:intergenic | 40.0% |
| ! | TTGCATCACGCCATTGTTTT+AGG | + | chr3_1:65359804-65359823 | None:intergenic | 40.0% |
| AAAAATGAGCTTGCGCACTT+TGG | + | chr3_1:65359849-65359868 | None:intergenic | 40.0% | |
| ! | AAAGTGCGCAAGCTCATTTT+TGG | - | chr3_1:65359848-65359867 | Msa0368570:intron | 40.0% |
| GATCATATTCGACCCATCAA+TGG | + | chr3_1:65359884-65359903 | None:intergenic | 40.0% | |
| ! | GAATTGAGCTTGCACACTTT+TGG | - | chr3_1:65359989-65360008 | Msa0368570:intron | 40.0% |
| TGGCATGATGCAATTCATTG+AGG | + | chr3_1:65360027-65360046 | None:intergenic | 40.0% | |
| !!! | ATCATGCCATTGTTTTAGGG+TGG | - | chr3_1:65360038-65360057 | Msa0368570:intron | 40.0% |
| GAGAGAGAGAGAGAGAAATA+TGG | - | chr3_1:65360346-65360365 | Msa0368570:intron | 40.0% | |
| AGAGAGAGAGAAATATGGGT+GGG | - | chr3_1:65360351-65360370 | Msa0368570:intron | 40.0% | |
| CACATTGTAATTGGGTGTGA+AGG | - | chr3_1:65360402-65360421 | Msa0368570:intron | 40.0% | |
| CATTGTAATTGGGTGTGAAG+GGG | - | chr3_1:65360404-65360423 | Msa0368570:intron | 40.0% | |
| TGTTCGAATCCACTATGAGA+TGG | - | chr3_1:65361057-65361076 | Msa0368570:intron | 40.0% | |
| ! | TCCCGCTCATTTGCTTTATT+AGG | + | chr3_1:65361453-65361472 | None:intergenic | 40.0% |
| TCTCTAGATTCAGCTTGATG+AGG | + | chr3_1:65361958-65361977 | None:intergenic | 40.0% | |
| ! | CTATTACATGGTGATGCAAG+AGG | + | chr3_1:65362022-65362041 | None:intergenic | 40.0% |
| CATCACCATGTAATAGCACA+GGG | - | chr3_1:65362026-65362045 | Msa0368570:intron | 40.0% | |
| ! | AACGGTGTTAATTGAAAGGG+AGG | - | chr3_1:65362255-65362274 | Msa0368570:intron | 40.0% |
| GTGTAGTTGAAAACTAGAGG+GGG | - | chr3_1:65362315-65362334 | Msa0368570:intron | 40.0% | |
| CCCAACAAAAAAAACGCGTA+TGG | - | chr3_1:65362383-65362402 | Msa0368570:intron | 40.0% | |
| !!! | GCCATACGCGTTTTTTTTGT+TGG | + | chr3_1:65362387-65362406 | None:intergenic | 40.0% |
| !!! | GGTTTTGTTGCCATGCAAAT+TGG | + | chr3_1:65363190-65363209 | None:intergenic | 40.0% |
| TGGTCACCCAAATGTTGAAA+CGG | - | chr3_1:65363253-65363272 | Msa0368570:intron | 40.0% | |
| TGGACATCGAGAAGAATCAT+TGG | - | chr3_1:65363390-65363409 | Msa0368570:intron | 40.0% | |
| CATCATTCTTCTTTCGTAGC+TGG | + | chr3_1:65363427-65363446 | None:intergenic | 40.0% | |
| CTAACTGAGTTAAGCTAACG+AGG | + | chr3_1:65363861-65363880 | None:intergenic | 40.0% | |
| TCTTGTGAGCTTAACTCAGT+TGG | - | chr3_1:65363957-65363976 | Msa0368570:intron | 40.0% | |
| ! | TGAGCTTAACTCAGTTGGTA+AGG | - | chr3_1:65363962-65363981 | Msa0368570:intron | 40.0% |
| GCATAAAATATGCAAGGTCC+GGG | - | chr3_1:65363990-65364009 | Msa0368570:intron | 40.0% | |
| CATAAAATATGCAAGGTCCG+GGG | - | chr3_1:65363991-65364010 | Msa0368570:intron | 40.0% | |
| ! | CCTAACCTAATTTGAGATGG+AGG | + | chr3_1:65364186-65364205 | None:intergenic | 40.0% |
| CCTCCATCTCAAATTAGGTT+AGG | - | chr3_1:65364183-65364202 | Msa0368570:intron | 40.0% | |
| GGATAGGAGGATGTAAGATA+AGG | - | chr3_1:65364204-65364223 | Msa0368570:intron | 40.0% | |
| GGAAACTCACAAAGGAGATT+GGG | + | chr3_1:65364383-65364402 | None:intergenic | 40.0% | |
| AGGAAACTCACAAAGGAGAT+TGG | + | chr3_1:65364384-65364403 | None:intergenic | 40.0% | |
| AGGAAGAAGGAAACTCACAA+AGG | + | chr3_1:65364391-65364410 | None:intergenic | 40.0% | |
| GGAAAATCAGAATGTTCTGG+AGG | + | chr3_1:65364675-65364694 | None:intergenic | 40.0% | |
| AAACCCAGTTAGGCTATGTT+GGG | + | chr3_1:65364838-65364857 | None:intergenic | 40.0% | |
| ATCCAGTTTGGTTAGGTTAG+GGG | + | chr3_1:65365318-65365337 | None:intergenic | 40.0% | |
| CAATCCAGTTTGGTTAGGTT+AGG | + | chr3_1:65365320-65365339 | None:intergenic | 40.0% | |
| AAGATTCTACGCCAAGTTAG+TGG | + | chr3_1:65365399-65365418 | None:intergenic | 40.0% | |
| ACAAACACATGTTCAGTGGT+TGG | + | chr3_1:65365457-65365476 | None:intergenic | 40.0% | |
| CAAAAAAAACTCAGCATCCC+TGG | + | chr3_1:65365529-65365548 | None:intergenic | 40.0% | |
| !!! | CAGGGATGCTGAGTTTTTTT+TGG | - | chr3_1:65365527-65365546 | Msa0368570:intron | 40.0% |
| AATCAATACTGAGGTATGCG+GGG | - | chr3_1:65365839-65365858 | Msa0368570:intron | 40.0% | |
| ATCAGTCTCACCAAATTCTC+AGG | + | chr3_1:65365918-65365937 | None:intergenic | 40.0% | |
| GAGCCATTACAGTGTTATCT+TGG | - | chr3_1:65365944-65365963 | Msa0368570:intron | 40.0% | |
| TCTCTAAGCCCAACTATTTG+AGG | + | chr3_1:65366397-65366416 | None:intergenic | 40.0% | |
| ! | TTAGAGACGAGTCTCTAGAA+TGG | - | chr3_1:65366410-65366429 | Msa0368570:intron | 40.0% |
| !!! | AAAACAGGTTTTGGCTGATG+TGG | - | chr3_1:65366441-65366460 | Msa0368570:intron | 40.0% |
| !!! | AAACAGGTTTTGGCTGATGT+GGG | - | chr3_1:65366442-65366461 | Msa0368570:intron | 40.0% |
| ! | TATCCCTTGATAGCAAGAGA+AGG | - | chr3_1:65366479-65366498 | Msa0368570:CDS | 40.0% |
| ! | ACTCCTTCTCTTGCTATCAA+GGG | + | chr3_1:65366485-65366504 | None:intergenic | 40.0% |
| ATAGCAAGAGAAGGAGTCTA+TGG | - | chr3_1:65366488-65366507 | Msa0368570:CDS | 40.0% | |
| GAGCAATAAAAGCAACCTGC+AGG | - | chr3_1:65359610-65359629 | Msa0368570:CDS | 45.0% | |
| AGCAACATATGCACCACAGA+GGG | + | chr3_1:65359690-65359709 | None:intergenic | 45.0% | |
| !!! | ATCACGCCATTGTTTTAGGG+TGG | + | chr3_1:65359800-65359819 | None:intergenic | 45.0% |
| TGGCGTGATGCAATTCAATG+AGG | - | chr3_1:65359811-65359830 | Msa0368570:intron | 45.0% | |
| CAGGTTCCACCCTAAAACAA+TGG | + | chr3_1:65360047-65360066 | None:intergenic | 45.0% | |
| ! | AGTTTTCTTTCCGCTCGACA+TGG | - | chr3_1:65360281-65360300 | Msa0368570:intron | 45.0% |
| GAGAGAGAGAGAAATATGGG+TGG | - | chr3_1:65360350-65360369 | Msa0368570:intron | 45.0% | |
| AATTCACCGCTCTCAAGACT+AGG | - | chr3_1:65360789-65360808 | Msa0368570:intron | 45.0% | |
| GAAAATCACACTCAACTCCC+CGG | - | chr3_1:65361666-65361685 | Msa0368570:intron | 45.0% | |
| TTGAAACGTGAGGATTGACG+AGG | - | chr3_1:65361978-65361997 | Msa0368570:intron | 45.0% | |
| GCATCACCATGTAATAGCAC+AGG | - | chr3_1:65362025-65362044 | Msa0368570:intron | 45.0% | |
| ! | TATCGCCCTGTGCTATTACA+TGG | + | chr3_1:65362034-65362053 | None:intergenic | 45.0% |
| ! | CCACTGTCGCATTGCTATTA+TGG | + | chr3_1:65362180-65362199 | None:intergenic | 45.0% |
| CCATAATAGCAATGCGACAG+TGG | - | chr3_1:65362177-65362196 | Msa0368570:intron | 45.0% | |
| ! | TTTTAAGCAAACCTTGGGGG+AGG | - | chr3_1:65362348-65362367 | Msa0368570:intron | 45.0% |
| GTCATTCCACCCAATTTGCA+TGG | - | chr3_1:65363177-65363196 | Msa0368570:intron | 45.0% | |
| TTGTTGCCATGCAAATTGGG+TGG | + | chr3_1:65363186-65363205 | None:intergenic | 45.0% | |
| GAAGAGAAAAGGGAGGAAGA+AGG | + | chr3_1:65364404-65364423 | None:intergenic | 45.0% | |
| ! | TCTTCCTCCCTTTTCTCTTC+AGG | - | chr3_1:65364404-65364423 | Msa0368570:intron | 45.0% |
| AACACCTGAAGAGAAAAGGG+AGG | + | chr3_1:65364411-65364430 | None:intergenic | 45.0% | |
| TTGGGAGAGAGATGTTTGCA+TGG | + | chr3_1:65364820-65364839 | None:intergenic | 45.0% | |
| TCTCCCAACATAGCCTAACT+GGG | - | chr3_1:65364832-65364851 | Msa0368570:intron | 45.0% | |
| CAAACCCAGTTAGGCTATGT+TGG | + | chr3_1:65364839-65364858 | None:intergenic | 45.0% | |
| CACTTGAGTCAAACCCAGTT+AGG | + | chr3_1:65364848-65364867 | None:intergenic | 45.0% | |
| !! | ATGGTGGGTTTGGTTGTGAT+TGG | - | chr3_1:65365001-65365020 | Msa0368570:intron | 45.0% |
| !! | TGGTGGGTTTGGTTGTGATT+GGG | - | chr3_1:65365002-65365021 | Msa0368570:intron | 45.0% |
| TTCCCCTAACCTAACCAAAC+TGG | - | chr3_1:65365313-65365332 | Msa0368570:intron | 45.0% | |
| GGTGTCAATCCAGTTTGGTT+AGG | + | chr3_1:65365325-65365344 | None:intergenic | 45.0% | |
| AGGCATAGAGACCACAAACT+CGG | + | chr3_1:65365347-65365366 | None:intergenic | 45.0% | |
| GGGTTATGTTGTAATTGGGC+AGG | - | chr3_1:65365491-65365510 | Msa0368570:intron | 45.0% | |
| TGTAATTGGGCAGGTAGAGA+CGG | - | chr3_1:65365500-65365519 | Msa0368570:intron | 45.0% | |
| TTGAATTGAAGGGGAGCAAC+TGG | + | chr3_1:65366178-65366197 | None:intergenic | 45.0% | |
| ! | GACTCCTTCTCTTGCTATCA+AGG | + | chr3_1:65366486-65366505 | None:intergenic | 45.0% |
| AGAGAAGGAGTCTATGGAGT+AGG | - | chr3_1:65366494-65366513 | Msa0368570:CDS | 45.0% | |
| !! | TACTGTTTTTCCTCGTCACC+CGG | - | chr3_1:65366567-65366586 | Msa0368570:CDS | 45.0% |
| TAACCATAGTCGATGCATCC+GGG | + | chr3_1:65366588-65366607 | None:intergenic | 45.0% | |
| GTAACCATAGTCGATGCATC+CGG | + | chr3_1:65366589-65366608 | None:intergenic | 45.0% | |
| !! | TATACAAAAAAAAAAAATTA+AGG | - | chr3_1:65361027-65361046 | Msa0368570:intron | 5.0% |
| !!! | AATATTTTCTTAAAAAAAAA+AGG | - | chr3_1:65361354-65361373 | Msa0368570:intron | 5.0% |
| !!! | TTTTTCATAATATTAAATTA+AGG | + | chr3_1:65361587-65361606 | None:intergenic | 5.0% |
| !!! | TTAATTTGAATAAAATTAAA+GGG | - | chr3_1:65362284-65362303 | Msa0368570:intron | 5.0% |
| !!! | AAAAAAATATATTTTTTTAG+AGG | - | chr3_1:65363703-65363722 | Msa0368570:intron | 5.0% |
| !! | AAAAAAAATACATAAAAAAA+GGG | + | chr3_1:65365665-65365684 | None:intergenic | 5.0% |
| !! | AAAAAAAAATACATAAAAAA+AGG | + | chr3_1:65365666-65365685 | None:intergenic | 5.0% |
| ! | AGCAAGTTTTGCACCCTCTG+TGG | - | chr3_1:65359674-65359693 | Msa0368570:CDS | 50.0% |
| GAGCAACATATGCACCACAG+AGG | + | chr3_1:65359691-65359710 | None:intergenic | 50.0% | |
| !! | GTGCGCAAGCTCATTTTTGG+TGG | - | chr3_1:65359851-65359870 | Msa0368570:intron | 50.0% |
| TGGTGGAGTTGTCCCATTGA+TGG | - | chr3_1:65359868-65359887 | Msa0368570:intron | 50.0% | |
| GGTGGAGTTGTCCCATTGAT+GGG | - | chr3_1:65359869-65359888 | Msa0368570:intron | 50.0% | |
| ! | CTTGCACACTTTTGGCGCTA+CGG | - | chr3_1:65359997-65360016 | Msa0368570:intron | 50.0% |
| ! | GCGAGCTTTGCACCCTTTTA+TGG | + | chr3_1:65360164-65360183 | None:intergenic | 50.0% |
| !! | ACTTTCTCGAAGCGTCGTAG+TGG | + | chr3_1:65360204-65360223 | None:intergenic | 50.0% |
| GCTTCGAGAAAGTCACTTGC+AGG | - | chr3_1:65360211-65360230 | Msa0368570:intron | 50.0% | |
| TCGAGCGGAAAGAAAACTCG+AGG | + | chr3_1:65360279-65360298 | None:intergenic | 50.0% | |
| TGTGCTTTAGCCATGTCGAG+CGG | + | chr3_1:65360294-65360313 | None:intergenic | 50.0% | |
| ! | TTTTGACCCGTGCGTTGCAT+GGG | - | chr3_1:65361266-65361285 | Msa0368570:intron | 50.0% |
| AGAAAACCCATGCAACGCAC+GGG | + | chr3_1:65361275-65361294 | None:intergenic | 50.0% | |
| GAGAAAACCCATGCAACGCA+CGG | + | chr3_1:65361276-65361295 | None:intergenic | 50.0% | |
| ! | ATGGTGATGCAAGAGGGATC+TGG | + | chr3_1:65362015-65362034 | None:intergenic | 50.0% |
| CTCTCCCAACATAGCCTAAC+TGG | - | chr3_1:65364831-65364850 | Msa0368570:intron | 50.0% | |
| GGGTTTGACTCAAGTGTACG+TGG | - | chr3_1:65364852-65364871 | Msa0368570:intron | 50.0% | |
| ACTCGGGTGTCAATCCAGTT+TGG | + | chr3_1:65365330-65365349 | None:intergenic | 50.0% | |
| TGGATTGACACCCGAGTTTG+TGG | - | chr3_1:65365333-65365352 | Msa0368570:intron | 50.0% | |
| GGCATAGAGACCACAAACTC+GGG | + | chr3_1:65365346-65365365 | None:intergenic | 50.0% | |
| TAGCCAGAGCATATGTGCAG+TGG | - | chr3_1:65365976-65365995 | Msa0368570:CDS | 50.0% | |
| TCACCACTGCACATATGCTC+TGG | + | chr3_1:65365982-65366001 | None:intergenic | 50.0% | |
| GCTTCGAGAAAGTCACCTGC+AGG | + | chr3_1:65359628-65359647 | None:intergenic | 55.0% | |
| CTTTCGTGAAGAGCCCACTG+CGG | + | chr3_1:65359652-65359671 | None:intergenic | 55.0% | |
| ! | CTTTTGACCCGTGCGTTGCA+TGG | - | chr3_1:65361265-65361284 | Msa0368570:intron | 55.0% |
| AATCACACTCAACTCCCCGG+AGG | - | chr3_1:65361669-65361688 | Msa0368570:intron | 55.0% | |
| TAAGCAAACCTTGGGGGAGG+TGG | - | chr3_1:65362351-65362370 | Msa0368570:intron | 55.0% | |
| AAGCAAACCTTGGGGGAGGT+GGG | - | chr3_1:65362352-65362371 | Msa0368570:intron | 55.0% | |
| AATTACACCCACCTCCCCCA+AGG | + | chr3_1:65362362-65362381 | None:intergenic | 55.0% | |
| ! | AGCATTGAGCTCGCGCACTT+TGG | + | chr3_1:65363344-65363363 | None:intergenic | 55.0% |
| AGCGGGCGAAACCACTAACT+TGG | - | chr3_1:65365385-65365404 | Msa0368570:intron | 55.0% | |
| GCAGGTAGAGACGGAATCCA+GGG | - | chr3_1:65365509-65365528 | Msa0368570:intron | 55.0% | |
| ! | TTAATGGTGGGACCCCTTCC+CGG | - | chr3_1:65365603-65365622 | Msa0368570:intron | 55.0% |
| CATACACAAGGTCCGGGAAG+GGG | + | chr3_1:65365618-65365637 | None:intergenic | 55.0% | |
| GCATACACAAGGTCCGGGAA+GGG | + | chr3_1:65365619-65365638 | None:intergenic | 55.0% | |
| CTTCCCGGACCTTGTGTATG+CGG | - | chr3_1:65365618-65365637 | Msa0368570:intron | 55.0% | |
| TTCCCGGACCTTGTGTATGC+GGG | - | chr3_1:65365619-65365638 | Msa0368570:intron | 55.0% | |
| CCAAAGCTCCCGCATACACA+AGG | + | chr3_1:65365630-65365649 | None:intergenic | 55.0% | |
| CCTTGTGTATGCGGGAGCTT+TGG | - | chr3_1:65365627-65365646 | Msa0368570:intron | 55.0% | |
| ! | ATGCGGGAGCTTTGGTGCAT+TGG | - | chr3_1:65365635-65365654 | Msa0368570:intron | 55.0% |
| ! | TGCGGGAGCTTTGGTGCATT+GGG | - | chr3_1:65365636-65365655 | Msa0368570:intron | 55.0% |
| !! | TCACCCGGATGCATCGACTA+TGG | - | chr3_1:65366582-65366601 | Msa0368570:CDS | 55.0% |
| !! | ACTTTCTCGAAGCGCCGCAG+TGG | - | chr3_1:65359635-65359654 | Msa0368570:CDS | 60.0% |
| !! | CTTTCTCGAAGCGCCGCAGT+GGG | - | chr3_1:65359636-65359655 | Msa0368570:CDS | 60.0% |
| GGCAGGTAGAGACGGAATCC+AGG | - | chr3_1:65365508-65365527 | Msa0368570:intron | 60.0% | |
| CGCATACACAAGGTCCGGGA+AGG | + | chr3_1:65365620-65365639 | None:intergenic | 60.0% | |
| CTCCCGCATACACAAGGTCC+GGG | + | chr3_1:65365624-65365643 | None:intergenic | 60.0% | |
| GCTCCCGCATACACAAGGTC+CGG | + | chr3_1:65365625-65365644 | None:intergenic | 60.0% | |
| GGTGGTCGGGGTTTGAACCC+CGG | + | chr3_1:65364011-65364030 | None:intergenic | 65.0% | |
| GTCGATGCATCCGGGTGACG+AGG | + | chr3_1:65366580-65366599 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 65359572 | 65366615 | 65359572 | ID=Msa0368570;Name=Msa0368570 |
| chr3_1 | mRNA | 65359572 | 65366615 | 65359572 | ID=Msa0368570-mRNA-1;Parent=Msa0368570;Name=Msa0368570-mRNA-1;_AED=0.68;_eAED=0.68;_QI=0|0|0|0.33|1|1|3|0|124 |
| chr3_1 | exon | 65366451 | 65366615 | 65366451 | ID=Msa0368570-mRNA-1:exon:13095;Parent=Msa0368570-mRNA-1 |
| chr3_1 | exon | 65365955 | 65366017 | 65365955 | ID=Msa0368570-mRNA-1:exon:13094;Parent=Msa0368570-mRNA-1 |
| chr3_1 | exon | 65359572 | 65359718 | 65359572 | ID=Msa0368570-mRNA-1:exon:13093;Parent=Msa0368570-mRNA-1 |
| chr3_1 | CDS | 65366451 | 65366615 | 65366451 | ID=Msa0368570-mRNA-1:cds;Parent=Msa0368570-mRNA-1 |
| chr3_1 | CDS | 65365955 | 65366017 | 65365955 | ID=Msa0368570-mRNA-1:cds;Parent=Msa0368570-mRNA-1 |
| chr3_1 | CDS | 65359572 | 65359718 | 65359572 | ID=Msa0368570-mRNA-1:cds;Parent=Msa0368570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
