AlfalfaGEDB | Msa0369030

M. sativa cultivar zhongmu-4 / Msa0369030

KEGG: -
GO: GO:0000302 GO:0001101 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0007568 GO:0007569 GO:0008150 GO:0009611 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010150 GO:0010468 GO:0010556 GO:0010941 GO:0010942 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044093 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0046677 GO:0046983 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0080134 GO:0090398 GO:0090400 GO:0090693 GO:0090696 GO:0097159 GO:0097305 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1900140 GO:1901363 GO:1901700 GO:1902074 GO:1903506 GO:1904248 GO:1904250 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369030	XP_003600845.2	71.069	159	17	1	1	130	1	159	4.38e-70	227

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369030	sp\|Q9FLR3\|NAC79_ARATH	56.944	144	32	2	11	125	9	151	5.22e-46	157

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369030	G7JAN2	71.069	159	17	1	1	130	1	159	2.09e-70	227

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TFs/TRs:

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Gene ID	Type	Classification
Msa0369030	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369030	MtrunA17_Chr7g0217721	68.421	171	13	2	1	130	1	171	3.64e-73	224
Msa0369030	MtrunA17_Chr7g0217711	64.972	177	27	2	1	142	1	177	1.63e-72	217
Msa0369030	MtrunA17_Chr3g0113031	79.208	101	18	2	51	148	1	101	3.09e-51	166
Msa0369030	MtrunA17_Chr3g0113001	88.235	85	7	1	46	130	24	105	1.29e-48	160
Msa0369030	MtrunA17_Chr4g0060931	59.155	142	28	3	13	125	11	151	1.32e-48	162
Msa0369030	MtrunA17_Chr6g0453451	56.849	146	33	2	14	130	15	159	1.36e-47	158
Msa0369030	MtrunA17_Chr3g0091921	54.667	150	38	2	5	125	2	150	6.56e-45	150
Msa0369030	MtrunA17_Chr6g0461661	54.422	147	35	3	14	129	13	158	1.35e-43	149
Msa0369030	MtrunA17_Chr3g0113051	97.101	69	2	0	131	199	123	191	2.16e-42	141
Msa0369030	MtrunA17_Chr6g0484441	54.762	126	28	1	19	115	5	130	7.19e-42	143

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369030	AT5G07680.1	56.944	144	32	2	11	125	9	151	5.31e-47	157
Msa0369030	AT5G61430.1	56.338	142	32	2	13	125	10	150	2.50e-46	155
Msa0369030	AT3G29035.1	56.250	144	34	1	3	117	8	151	4.95e-46	154
Msa0369030	AT5G07680.2	57.971	138	28	2	17	125	1	137	2.09e-45	152
Msa0369030	AT5G39610.1	56.716	134	29	1	13	117	14	147	3.11e-43	146
Msa0369030	AT3G04060.1	53.691	149	38	3	7	125	8	155	2.36e-42	145
Msa0369030	AT5G18270.2	55.639	133	29	2	15	117	17	149	1.16e-41	143
Msa0369030	AT5G18270.1	55.639	133	29	2	15	117	17	149	1.25e-41	143
Msa0369030	AT5G53950.1	56.115	139	29	3	19	126	17	154	1.03e-40	142
Msa0369030	AT3G18400.1	54.762	126	28	2	19	115	5	130	1.55e-40	140

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Find 42 sgRNAs with CRISPR-Local

Find 478 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAATACCTTGTCAAGA+AGG	0.466786	3_1:-66155245	Msa0369030:CDS
AAATGAAAAGGTCAAATTTC+CGG	0.296027	3_1:-66155305	Msa0369030:CDS
AACATGATTTGGGATAGGCC+TGG	0.600433	3_1:+66147507	None:intergenic
ACCAATAGAGCTACTAATGC+TGG	0.495849	3_1:-66154232	Msa0369030:CDS
AGAGTGTGTTACCCGCCAAT+CGG	0.570583	3_1:+66154077	None:intergenic
AGGGAGAGAAAATACCCAAC+TGG	0.520226	3_1:-66154262	Msa0369030:intron
ATGCATGAATACCGATTGGC+GGG	0.543086	3_1:-66154088	Msa0369030:CDS
CAACCTATCCACACATGGAA+TGG	0.547037	3_1:-66154047	Msa0369030:intron
CAATATTACCATTCCATGTG+TGG	0.569497	3_1:+66154039	None:intergenic
CATGCATGAATACCGATTGG+CGG	0.600090	3_1:-66154089	Msa0369030:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCAATACCTTGTCAAGA+AGG	-	chr3_1:66147432-66147451	Msa0369030:CDS	30.0%
ATATGAATAAGTGTGAACCA+TGG	-	chr3_1:66147497-66147516	Msa0369030:CDS	30.0%
TATGAATAAGTGTGAACCAT+GGG	-	chr3_1:66147498-66147517	Msa0369030:CDS	30.0%
ATGCAGTGTTTATTTGATTC+AGG	+	chr3_1:66147846-66147865	None:intergenic	30.0%
TAAACTAAGTCTTCTTTGGT+AGG	+	chr3_1:66147953-66147972	None:intergenic	30.0%
CACATAAACTAAGTCTTCTT+TGG	+	chr3_1:66147957-66147976	None:intergenic	30.0%
CAAAGAAGACTTAGTTTATG+TGG	-	chr3_1:66147955-66147974	Msa0369030:intron	30.0%
CTAAGGTGTAATTAAACCAT+TGG	+	chr3_1:66148120-66148139	None:intergenic	30.0%
AGATAACGACAATATCTCTA+AGG	+	chr3_1:66148137-66148156	None:intergenic	30.0%
TTGTCGTTATCTTACTTTGA+TGG	-	chr3_1:66148145-66148164	Msa0369030:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	66147334	66155365	66147334	ID=Msa0369030;Name=Msa0369030
chr3_1	mRNA	66147334	66155365	66147334	ID=Msa0369030-mRNA-1;Parent=Msa0369030;Name=Msa0369030-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0\|0\|0\|1\|0\|0.33\|3\|0\|199
chr3_1	exon	66155207	66155365	66155207	ID=Msa0369030-mRNA-1:exon:13366;Parent=Msa0369030-mRNA-1
chr3_1	exon	66154048	66154278	66154048	ID=Msa0369030-mRNA-1:exon:13365;Parent=Msa0369030-mRNA-1
chr3_1	exon	66147334	66147543	66147334	ID=Msa0369030-mRNA-1:exon:13364;Parent=Msa0369030-mRNA-1
chr3_1	CDS	66155207	66155365	66155207	ID=Msa0369030-mRNA-1:cds;Parent=Msa0369030-mRNA-1
chr3_1	CDS	66154048	66154278	66154048	ID=Msa0369030-mRNA-1:cds;Parent=Msa0369030-mRNA-1
chr3_1	CDS	66147334	66147543	66147334	ID=Msa0369030-mRNA-1:cds;Parent=Msa0369030-mRNA-1

Gene Sequence

>Msa0369030

ATGGGATCAAATGAGAATGTTTACAATCAAAAAATGGAAAATGAAAAGGTCAAATTTCCGGCTGGTTATCGATTCTCTCCGACCGATGAAGAGCTTATAAATCAATACCTTGTCAAGAAGGTTGATGACAATAATTTCTGTGCTATAGATATTGCTGAAAGAAAATACCCAACTGGCCAAAGGACCAATAGAGCTACTAATGCTGGCTATTGGAAAGCAACAGGCAAAGACAAAGAGATTTTCAAGGGAAATGCATTAATTGGGATGAAAAAAACATTGGTTTTCTACAAAGGAAGAGCGCCGAGTGGTGAAAAAACCAATTGGGTCATGCATGAATACCGATTGGCGGGTAACACACTCTCTGAGCACAACCTATCCACACATGGAATGGTAACAGTCGAAAGCCAGGCCTATCCCAAATCATGTTTCAAGTGTTCACACGGAGGTTGTCCTATAACTCCATCAAATTATGCAGCCCTTGAAGGCATTTTGTACTGCAAGCACCATTTCTCTCAGCTTTTTGAGGAGAAAGGGAGCTACAATCATCTTATCAAGTCTGCATCAATCAAACGTGCAGCAGCCTCTGTTCCAGAATCTTGA

Protein sequence

>Msa0369030

MGSNENVYNQKMENEKVKFPAGYRFSPTDEELINQYLVKKVDDNNFCAIDIAERKYPTGQRTNRATNAGYWKATGKDKEIFKGNALIGMKKTLVFYKGRAPSGEKTNWVMHEYRLAGNTLSEHNLSTHGMVTVESQAYPKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFEEKGSYNHLIKSASIKRAAASVPES*