AlfalfaGEDB | Msa0369510

M. sativa cultivar zhongmu-4 / Msa0369510

KEGG: K10875
GO: GO:0000003 GO:0000018 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0030491 GO:0030702 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0033170 GO:0034641 GO:0035822 GO:0035825 GO:0035861 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051321 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1902679 GO:1903046 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00176.26

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369510	XP_003600991.1	94.372	1297	43	1	1	1297	1	1267	0.0	2521

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369510	sp\|F4K493\|CLSY2_ARATH	61.266	790	280	11	518	1296	486	1260	0.0	947
Msa0369510	sp\|F4K493\|CLSY2_ARATH	37.363	364	153	13	5	351	3	308	3.61e-52	204

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369510	G7J2D7	94.372	1297	43	1	1	1297	1	1267	0.0	2521

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0369510	TR	SNF2

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369510	MtrunA17_Chr3g0114161	92.639	1277	41	2	21	1297	25	1248	0.0	2417
Msa0369510	MtrunA17_Chr7g0224051	79.298	855	157	7	443	1296	281	1116	0.0	1359
Msa0369510	MtrunA17_Chr7g0224051	66.352	318	70	4	47	363	1	282	2.49e-122	408
Msa0369510	MtrunA17_Chr5g0437621	54.572	1367	479	29	5	1296	4	1303	0.0	1332
Msa0369510	MtrunA17_Chr1g0191141	72.418	881	213	11	418	1296	250	1102	0.0	1249
Msa0369510	MtrunA17_Chr1g0191141	58.621	261	74	2	21	281	8	234	8.72e-82	292
Msa0369510	MtrunA17_Chr7g0233021	35.359	724	395	18	580	1277	537	1213	2.19e-112	382
Msa0369510	MtrunA17_Chr7g0233031	33.594	768	434	19	542	1283	515	1232	3.17e-112	382
Msa0369510	MtrunA17_Chr7g0225791	33.970	733	432	17	559	1277	574	1268	2.53e-109	374
Msa0369510	MtrunA17_Chr4g0047081	33.750	720	422	16	580	1285	548	1226	1.07e-105	363

Showing 1 to 10 of 37 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369510	AT5G20420.1	61.266	790	280	11	518	1296	486	1260	0.0	947
Msa0369510	AT5G20420.1	37.363	364	153	13	5	351	3	308	3.67e-53	204
Msa0369510	AT3G42670.2	58.274	846	306	14	473	1296	434	1254	0.0	947
Msa0369510	AT3G42670.2	34.270	356	182	10	5	357	3	309	4.71e-48	188
Msa0369510	AT3G42670.3	58.274	846	306	14	473	1296	434	1254	0.0	947
Msa0369510	AT3G42670.3	34.270	356	182	10	5	357	3	309	4.71e-48	188
Msa0369510	AT3G42670.1	58.274	846	306	14	473	1296	434	1254	0.0	947
Msa0369510	AT3G42670.1	34.270	356	182	10	5	357	3	309	4.71e-48	188
Msa0369510	AT3G42670.4	58.175	844	312	13	473	1296	434	1256	0.0	946
Msa0369510	AT3G42670.4	34.270	356	182	10	5	357	3	309	4.41e-48	188

Showing 1 to 10 of 62 entries

Previous1 2 3 4 5 6 7Next

Find 195 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGAAGATTCCTGTGC+CGG	0.511195	3_1:-66841982	Msa0369510:CDS
AAACTGACATTATTAGTCCT+TGG	0.435671	3_1:-66844187	Msa0369510:CDS
AAAGAGATTATGGTACTAAC+GGG	0.497650	3_1:-66840928	Msa0369510:CDS
AAAGCATTGAGAGAAAGCCC+TGG	0.610887	3_1:-66841726	Msa0369510:CDS
AAATTGACATGAACATTGAT+CGG	0.547067	3_1:+66844544	None:intergenic
AAATTTGAAGATCAAAGCAG+CGG	0.654526	3_1:-66840868	Msa0369510:CDS
AACAAGACTGTTGGAGAAAA+AGG	0.259687	3_1:-66843331	Msa0369510:CDS
AACACAGCCACCACTTGAGT+TGG	0.516402	3_1:+66842142	None:intergenic
AACAGCCTCTTGTGTAAAAC+AGG	0.332338	3_1:+66844945	None:intergenic
AACCTTGATTTAGTGCTTCT+AGG	0.271299	3_1:+66841675	None:intergenic

Showing 1 to 10 of 195 entries

Previous1 2 3 4 5…20Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GAACTCTTAAAAATAGAGTC+AGG	-	chr3_1:66841441-66841460	Msa0369510:CDS	30.0%
TTCAGTATCAATGAAACGTA+AGG	+	chr3_1:66841475-66841494	None:intergenic	30.0%
AGCATAGATATATCAATTCC+AGG	+	chr3_1:66841579-66841598	None:intergenic	30.0%
ATAATATCAAGAAAGGTCAC+GGG	+	chr3_1:66841947-66841966	None:intergenic	30.0%
TTCTAGCCATAATTTGAACT+TGG	-	chr3_1:66842057-66842076	Msa0369510:CDS	30.0%
TCAAGTGGTTAATTCAGTTA+AGG	+	chr3_1:66842102-66842121	None:intergenic	30.0%
AAAGAGATAAATATCAAGCC+AGG	+	chr3_1:66842177-66842196	None:intergenic	30.0%
CTCTTTGTAAAATGTAGATG+TGG	-	chr3_1:66842191-66842210	Msa0369510:CDS	30.0%
AAGTATTATGTTGAAGCCTT+TGG	+	chr3_1:66842381-66842400	None:intergenic	30.0%
CTTCAACATAATACTTGTGA+AGG	-	chr3_1:66842385-66842404	Msa0369510:CDS	30.0%

Showing 1 to 10 of 354 entries

Previous1 2 3 4 5…36Next

Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	66840486	66846337	66840486	ID=Msa0369510;Name=Msa0369510
chr3_1	mRNA	66840486	66846337	66840486	ID=Msa0369510-mRNA-1;Parent=Msa0369510;Name=Msa0369510-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|0\|0\|0.66\|1\|1\|6\|0\|1297
chr3_1	exon	66846280	66846337	66846280	ID=Msa0369510-mRNA-1:exon:13636;Parent=Msa0369510-mRNA-1
chr3_1	exon	66845176	66845420	66845176	ID=Msa0369510-mRNA-1:exon:13635;Parent=Msa0369510-mRNA-1
chr3_1	exon	66844884	66844973	66844884	ID=Msa0369510-mRNA-1:exon:13634;Parent=Msa0369510-mRNA-1
chr3_1	exon	66843215	66844615	66843215	ID=Msa0369510-mRNA-1:exon:13633;Parent=Msa0369510-mRNA-1
chr3_1	exon	66842782	66842928	66842782	ID=Msa0369510-mRNA-1:exon:13632;Parent=Msa0369510-mRNA-1
chr3_1	exon	66840486	66842438	66840486	ID=Msa0369510-mRNA-1:exon:13631;Parent=Msa0369510-mRNA-1
chr3_1	CDS	66846280	66846337	66846280	ID=Msa0369510-mRNA-1:cds;Parent=Msa0369510-mRNA-1
chr3_1	CDS	66845176	66845420	66845176	ID=Msa0369510-mRNA-1:cds;Parent=Msa0369510-mRNA-1
chr3_1	CDS	66844884	66844973	66844884	ID=Msa0369510-mRNA-1:cds;Parent=Msa0369510-mRNA-1
chr3_1	CDS	66843215	66844615	66843215	ID=Msa0369510-mRNA-1:cds;Parent=Msa0369510-mRNA-1
chr3_1	CDS	66842782	66842928	66842782	ID=Msa0369510-mRNA-1:cds;Parent=Msa0369510-mRNA-1
chr3_1	CDS	66840486	66842438	66840486	ID=Msa0369510-mRNA-1:cds;Parent=Msa0369510-mRNA-1

Gene Sequence

>Msa0369510

ATGGCGCCCATAAAAAGGCATTTGCATCAATGGAAGCATCCATTTGATGCTAATTATCCATTTGAAGCAGTATTGAATGGATCATGGCAACCTGTGGAACTCTTAAAAATAGAGTCAGGAAAAACTACCTTACGTTTCATTGATACTGAACAAATTCAAAGCACTTTGTCATCAGATATTCGGATAAGATCAAGGAAAGCTACTTCATCTGATTGCTCCAGCTTTTTACGACCTGGAATTGATATATCTATGCTATTAGGCTATCGATACAATGATAATTCAGATCCATTTACGTCTATTCCACCTTACCCTGTTTTACACAAGAGGCTGTTTCCAAGACTTGAACCCGTGACCTTTCAGTCACATGACAACAACTTTACTAGTTGCGCCAAGATGTGGATTGATGCAAGAATAAATTCTATACATAGACAGCCTCACAAATCCGATCAATGTTCATGTCAATTTTATGTTAACTTATATGATGATCAAGGTTCACTTGGTACAGAGGTAAAAACTCTTAATAAAGAGGTTAATGCAATTGAAATAGATCAAATTTTCATCCTCCAAAGGCTTCAACATAATACTTGTGAAGGCTTGTTAAAAGAAAATGATACCTCTGAAATTAAGCCTTATAGGTGGGATTCATCAGAAGATTGCTCTTCATTATCACAATCTAGATTACTCGTTGGGAAATTTTCATCTGATCTTTCGTGGTTTGTAATTACATCTTTTTTAAAGAAGGTTTCATTCCATATAAGATCTGTGCAAAACAAGATTGTGTATCAAGTTATGGGAAATGAAACTGACATTATTAGTCCTTGGCTTATAAATGTTGTGAACTTCAGCTTAAAAAAGGAATCACTAGTACCTATTGTTTCTCAATTTGATGTATTTTATGATTATGATGGAGAAGAAGATGAAGCGCCACCAAAGCCATCACATGAAGTTGAAGGCTTGCGACGTTCGAAACGTAGGAATGTACAGCCTGAACGTTACGTAGGTTGTGTTGTTGAGAAGTTGGAAGTTGGTAATTTTCGAACGTGTCCCTACAAGAGAACAACTTATATGATAGAAGATGAAAACTCTTCTTCAGATTCAGAAGAGGATGGTGGTAAGAGTGATCAAAAGGTTAATAAGGTGAATCATTGCAAAGCTATTAATGTGAGCACAAGGAACAAAAATTATGATGGTGATGGCAAGTTTAAGGTACATAAAACTGATGACATTTCTTCCAAATATCATTATTTGACTAATTATATTTCTTGTGCAAAGAAGAATGGTGTTGATGTATTGAATTTGGAGTACGGCAATGAGCCTACAACAATATCAAGTGATGAAGAAGTTGATGGTAATGTTACTTTGAGAAATTATAATAGTTTCTTTAAAGAGAAGATAAAGAGGAAGAGACTTCATGTTGTGGATGATATGGATTTTCAAACCAAATGGGAAGGGATACATTTCAAAAAAGAAGCTCCAACAGAAAATTTTCATTCGAGTTATTTGTCTAACAGAGGTCATGTTCATGAAGAACAAGATCATAAAGGCGGTAGAACATCCAACGCTGATGCCTGCAAGGAAATAATAGATAGTTACATGAAGAATTTTGATAGTCTACCAACTGAAGAAGAGCCTACTGTAAATGAGAAGCGGAAGGAAACAAGACTGTTGGAGAAAAAGGAAGAAGAAAAAGTATCGAAAAGCAATGATGAGGAAGAATATCCTGATGATTTGGATGCCTTGTGGGAAGAAATGAATACAGCTTTGACATCAAGTTATCTTCTTGATGGAACCGCGGGTTCAACTGCTGAGGTTGTAGCTGATACCAAGAAAGAATCCAGGGATAGTTGTGAACATGATTTTAGATTGGATGAAGAAATTGGAATCTACTGCCTTCGATGTGGATTTGTGAAAACCGCAATACGAGACATTTCTGAGCCATTTGTGGAATGCCCAAAGAGGTACAAAGAGGAGAAACAGTGCAGTGAAGAAAATAAGGAACATAAATCAGAGCCAAAAGTTGATGAAGATTATAATAATGATATGTTCTCGACTCATGCTACTGATCCTGATGAACCATTGACTAATGATATCGACAATGTTTGGGAATTGATTCCTGAACTTGAAGAAAAGATGCATGAACACCAGAAAAAAGCTTTTGAATTTCTTTGGCATAACATTGCTGGCTCTATGGAACCATCACTTATGGAAGAAAAATCCAACTCAAGTGGTGGCTGTGTTATATCACATGCTCCTGGAGCAGGAAAAACCTTTCTCATCATTTCTTTTCTTGTAAGTTACTTGAAGTTATTTCCAGGGAAACGACCTCTAGTCCTAGCTCCAAAAACCACACTCTACACGTGGCGAAAAGAGTTCAAAAAATGGAAGATTCCTGTGCCGGTTTATCTTATCCATGGCCGTCGAACCTCTCCAGGTTCAAGTTCGACGACACCAAAATCAATGATTCTTCCTGGATTTCCAAGACCTTCTAGTGATGTCAAACATGTTTTGGATTGTCTTCGCAAGATACAGAAGTGGCACTCACACCCTAGTGTTCTTGTCATGGGCTATACTTCATTTTTACAATTAATGAGATCAAAAGATACAAAATTCGAACACAGAAAATACATGGCCAAAGCATTGAGAGAAAGCCCTGGAATCTTGATACTTGATGAAGGACACAATCCTAGAAGCACTAAATCAAGGTTGAGGAAATGTTTAATGAAACTTCCAACAGAATTGAGAATATTACTCTCCGGCACATTGTTTCAGAACAATTTCGGTGAATATTTCAACACACTTTGTTTAGCTAGACCGAAATTTGTTCATGAAGTTCTACAAGAGTTAGATTCTAAATACCGAAGGAAAGGCGGAAAAATTGCGAAGAAAGAACGTCATTTGCTTGAGGCGCGCGCAAGAAAATTCTTCTTGAACAACATTGAAAAGAAAATTAACTCAGATATTGATGAGGAGAAGATGCAGGGTCTATATGTGCTGCGAAAAATCACTTCCGGTTTTATTGATGTGTACGACAGTGGAAATTCTTCTGAGACTCTTCCTGGTTTACAAATCTATACATTGCTCATGAATACGTCCGATGAACAGCATGAGATTGTACAGAAACTACAGAGGAAAATGGCTGAGAGTACCAGTTACCCTCTTGAGGTTGAGCTTTTGATAACACTTGGATCAATACATCCATGGCTGATCAAAACAGCTGCATCATGTGCAACTAAGTTTTTTGCGGAGGAAGAATTGAAGAAACTAGAAACAAGCAAATTTGATTTGAGAAAAGGTTCCAAAGTAAGATTTGTTTTGAGCCTAATCTCACGAGTGGTGAAAAATGAAAAGGTTCTTATCTTTTGTCACAACCTTGCACCTGTGAGATTCTTAATAGAGTTTTTTGAGAAATATTTTCAGTGGCAAAATGGTAAAGAGATTATGGTACTAACGGGTGAGCTAGACTTGTTTGAAAGAGGGAAAGTGATAGATAAATTTGAAGATCAAAGCAGCGGTTCAAAGATACTTCTTGCTTCAATCAATGCTTGTGCTGAAGGTATAAGTTTAACAGCAGCTTCTAGAGTGATTTTTCTGGACTCTGAGTGGAATCCTTCAAAAACAAAGCAAGCTATTGCACGCGCTTTTCGACCGGGCCAGCAGAAAATGGTTTATGTGTATCAGTTACTGACGACCGGGTCGATGGAAGAAGATAAGTATAGAAGAACTACTTGGAAAGAGTGGGTTTCTTGCATGATTTTCAGTGAGGAGTTTGTGGAAGATCCTTCTAAATGGCAAGCAGAGAAGATTGAAGATGATATACTTAGGGAGATGGTTGAAGAGGATAAGTCTAAAGCTATTCACATGATTATGAAGAATGAAAAGGCTTCAACAATCTAA

Protein sequence

>Msa0369510

MAPIKRHLHQWKHPFDANYPFEAVLNGSWQPVELLKIESGKTTLRFIDTEQIQSTLSSDIRIRSRKATSSDCSSFLRPGIDISMLLGYRYNDNSDPFTSIPPYPVLHKRLFPRLEPVTFQSHDNNFTSCAKMWIDARINSIHRQPHKSDQCSCQFYVNLYDDQGSLGTEVKTLNKEVNAIEIDQIFILQRLQHNTCEGLLKENDTSEIKPYRWDSSEDCSSLSQSRLLVGKFSSDLSWFVITSFLKKVSFHIRSVQNKIVYQVMGNETDIISPWLINVVNFSLKKESLVPIVSQFDVFYDYDGEEDEAPPKPSHEVEGLRRSKRRNVQPERYVGCVVEKLEVGNFRTCPYKRTTYMIEDENSSSDSEEDGGKSDQKVNKVNHCKAINVSTRNKNYDGDGKFKVHKTDDISSKYHYLTNYISCAKKNGVDVLNLEYGNEPTTISSDEEVDGNVTLRNYNSFFKEKIKRKRLHVVDDMDFQTKWEGIHFKKEAPTENFHSSYLSNRGHVHEEQDHKGGRTSNADACKEIIDSYMKNFDSLPTEEEPTVNEKRKETRLLEKKEEEKVSKSNDEEEYPDDLDALWEEMNTALTSSYLLDGTAGSTAEVVADTKKESRDSCEHDFRLDEEIGIYCLRCGFVKTAIRDISEPFVECPKRYKEEKQCSEENKEHKSEPKVDEDYNNDMFSTHATDPDEPLTNDIDNVWELIPELEEKMHEHQKKAFEFLWHNIAGSMEPSLMEEKSNSSGGCVISHAPGAGKTFLIISFLVSYLKLFPGKRPLVLAPKTTLYTWRKEFKKWKIPVPVYLIHGRRTSPGSSSTTPKSMILPGFPRPSSDVKHVLDCLRKIQKWHSHPSVLVMGYTSFLQLMRSKDTKFEHRKYMAKALRESPGILILDEGHNPRSTKSRLRKCLMKLPTELRILLSGTLFQNNFGEYFNTLCLARPKFVHEVLQELDSKYRRKGGKIAKKERHLLEARARKFFLNNIEKKINSDIDEEKMQGLYVLRKITSGFIDVYDSGNSSETLPGLQIYTLLMNTSDEQHEIVQKLQRKMAESTSYPLEVELLITLGSIHPWLIKTAASCATKFFAEEELKKLETSKFDLRKGSKVRFVLSLISRVVKNEKVLIFCHNLAPVRFLIEFFEKYFQWQNGKEIMVLTGELDLFERGKVIDKFEDQSSGSKILLASINACAEGISLTAASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLTTGSMEEDKYRRTTWKEWVSCMIFSEEFVEDPSKWQAEKIEDDILREMVEEDKSKAIHMIMKNEKASTI*