AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0369690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0369690 MtrunA17_Chr3g0114411 90.842 273 10 1 1 258 1 273 0.0 505
Msa0369690 MtrunA17_Chr3g0125321 29.101 189 123 5 61 243 53 236 1.70e-19 84.7
Msa0369690 MtrunA17_Chr5g0447111 30.814 172 115 3 47 218 127 294 1.65e-16 77.8
Msa0369690 MtrunA17_Chr3g0103031 32.759 174 111 4 46 218 125 293 4.12e-16 76.6
Msa0369690 MtrunA17_Chr5g0447191 34.426 122 77 2 79 200 20 138 6.97e-12 62.8
Msa0369690 MtrunA17_Chr5g0440341 26.455 189 109 5 75 244 191 368 5.92e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0369690 AT3G56230.1 44.364 275 125 6 1 249 1 273 2.88e-77 235
Msa0369690 AT1G01640.1 46.073 191 97 4 64 253 3 188 1.27e-52 170
Msa0369690 AT1G01640.2 47.093 172 85 4 83 253 1 167 4.67e-47 155
Msa0369690 AT2G40450.1 38.919 185 108 3 65 244 4 188 4.01e-26 102
Msa0369690 AT5G48510.1 36.667 180 110 3 74 249 13 192 6.06e-25 99.4
Msa0369690 AT4G04090.1 32.955 176 116 2 75 248 14 189 5.37e-24 95.9
Msa0369690 AT2G05330.1 36.364 143 89 2 104 244 34 176 2.52e-20 86.7
Msa0369690 AT4G08455.1 33.129 163 100 6 85 243 91 248 1.53e-19 85.9
Msa0369690 AT2G05330.2 36.364 132 82 2 115 244 1 132 1.41e-16 75.5
Msa0369690 AT3G29740.1 46.154 78 39 1 71 145 10 87 1.57e-16 73.2
Msa0369690 AT1G21780.2 32.414 145 93 3 72 216 148 287 5.47e-12 65.1
Msa0369690 AT1G21780.1 32.414 145 93 3 72 216 148 287 5.47e-12 65.1
Msa0369690 AT4G37610.1 25.926 189 132 4 57 244 31 212 7.48e-11 62.0

Find 39 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGTGGTCTTAATATTAA+TGG 0.168377 3_1:+67018536 None:intergenic
TGCACAAAAGCTTCAAATTT+AGG 0.202933 3_1:+67017162 None:intergenic
TAGTGTCTCAAATGCATTAG+AGG 0.315759 3_1:+67017272 None:intergenic
CTCGAATTTCGCCGCGAAAT+AGG 0.318434 3_1:+67018407 None:intergenic
AGGCTGTCTCCTTCAAATCT+TGG 0.335162 3_1:+67017226 None:intergenic
CTACAGTAGTACATTGCCTT+TGG 0.340071 3_1:-67017400 Msa0369690:CDS
ACCTGCACATAAATCCGTTT+TGG 0.358823 3_1:-67018119 Msa0369690:intron
GGAGAGATTCTAGCTCTTCA+TGG 0.366315 3_1:+67017433 None:intergenic
ATTCTAGCTCTTCATGGTTC+AGG 0.367741 3_1:+67017439 None:intergenic
CTGTGTGAATTTGTTCTTTG+AGG 0.404706 3_1:+67018179 None:intergenic
ACGGATTTATGTGCAGGTAT+AGG 0.430061 3_1:+67018124 None:intergenic
GGGCATGTTATGAAGGAGTT+AGG 0.432141 3_1:-67018499 Msa0369690:CDS
TGTGTGAATTTGTTCTTTGA+GGG 0.433559 3_1:+67018180 None:intergenic
AGCTCTTCATGGTTCAGGTC+AGG 0.435801 3_1:+67017444 None:intergenic
GTTTCAAGAGCATTTGTGAA+TGG 0.440008 3_1:-67017111 Msa0369690:CDS
TTGTTCAAACCAAGATTTGA+AGG 0.441270 3_1:-67017235 Msa0369690:CDS
GCCCCACATATTGTATTCCT+TGG 0.445705 3_1:+67018518 None:intergenic
AAAACAATCACTACTCCAAA+TGG 0.473612 3_1:-67018434 Msa0369690:CDS
CCACATATTGTATTCCTTGG+TGG 0.480024 3_1:+67018521 None:intergenic
TCACAGTATTTCAGCAAATG+TGG 0.504898 3_1:+67017321 None:intergenic
CACAGTATTTCAGCAAATGT+GGG 0.507721 3_1:+67017322 None:intergenic
ATAGGTGGACCATGATTGCC+TGG 0.517957 3_1:+67018142 None:intergenic
ATAGTTATTGTGTTACAAGT+TGG 0.522203 3_1:+67017468 None:intergenic
CCACCAAGGAATACAATATG+TGG 0.530946 3_1:-67018521 Msa0369690:CDS
ACCAAAACGGATTTATGTGC+AGG 0.533046 3_1:+67018118 None:intergenic
ATATGTGGGGCATGTTATGA+AGG 0.533797 3_1:-67018506 Msa0369690:CDS
TTGATTAGTCCAGGCAATCA+TGG 0.543484 3_1:-67018151 Msa0369690:CDS
CGCGAAATAGGAGAACCATT+TGG 0.543566 3_1:+67018419 None:intergenic
CAAGATTTGGCTTATCTCAG+AGG 0.546377 3_1:-67018214 Msa0369690:CDS
CAAATGGTTCTCCTATTTCG+CGG 0.549333 3_1:-67018418 Msa0369690:CDS
AAAACAAGAACTCACCAAAA+CGG 0.553720 3_1:+67018105 None:intergenic
ACAGATATATTGATTAGTCC+AGG 0.558976 3_1:-67018160 Msa0369690:CDS
GATTTATGTGCAGGTATAGG+TGG 0.598343 3_1:+67018127 None:intergenic
CACCAAGGAATACAATATGT+GGG 0.599288 3_1:-67018520 Msa0369690:CDS
ACTAATTGCACAGTTAAATG+TGG 0.601341 3_1:+67017132 None:intergenic
TACTACTGTAGAGAAACTCT+AGG 0.617790 3_1:+67017412 None:intergenic
AGCATGATCAACATGATGAA+CGG 0.624401 3_1:-67018476 Msa0369690:CDS
ACCAAGGAATACAATATGTG+GGG 0.680470 3_1:-67018519 Msa0369690:CDS
CATTAATATTAAGACCACCA+AGG 0.720929 3_1:-67018535 Msa0369690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTAACTAAGAAATTAA+AGG + chr3_1:67018446-67018465 None:intergenic 10.0%
!!! ATTTTTAACTAAGAAATTAA+AGG + chr3_1:67018446-67018465 None:intergenic 10.0%
!!! TAATTCTTTTCATAATTCTA+TGG - chr3_1:67017277-67017296 Msa0369690:CDS 15.0%
!! TAGAATAATTAAATTATGCA+TGG + chr3_1:67017691-67017710 None:intergenic 15.0%
!!! AGATAAAATAAAGTATCTTT+CGG - chr3_1:67017718-67017737 Msa0369690:intron 15.0%
!!! TTTTTTTTTGTTTACACAAA+GGG + chr3_1:67017796-67017815 None:intergenic 15.0%
!!! TTTTTTTTTTGTTTACACAA+AGG + chr3_1:67017797-67017816 None:intergenic 15.0%
!! TTTGTGTAAACAAAAAAAAA+AGG - chr3_1:67017796-67017815 Msa0369690:intron 15.0%
!! ATAACACATTTATCAAAATA+GGG + chr3_1:67018022-67018041 None:intergenic 15.0%
!! AATAACACATTTATCAAAAT+AGG + chr3_1:67018023-67018042 None:intergenic 15.0%
!!! TGTGTTATTCTTTTATTTTT+TGG - chr3_1:67018034-67018053 Msa0369690:intron 15.0%
!!! GTGTTATTCTTTTATTTTTT+GGG - chr3_1:67018035-67018054 Msa0369690:intron 15.0%
!!! TAATTCTTTTCATAATTCTA+TGG - chr3_1:67017277-67017296 Msa0369690:CDS 15.0%
!! TAGAATAATTAAATTATGCA+TGG + chr3_1:67017691-67017710 None:intergenic 15.0%
!!! AGATAAAATAAAGTATCTTT+CGG - chr3_1:67017718-67017737 Msa0369690:intron 15.0%
!!! TTTTTTTTTGTTTACACAAA+GGG + chr3_1:67017796-67017815 None:intergenic 15.0%
!!! TTTTTTTTTTGTTTACACAA+AGG + chr3_1:67017797-67017816 None:intergenic 15.0%
!! TTTGTGTAAACAAAAAAAAA+AGG - chr3_1:67017796-67017815 Msa0369690:intron 15.0%
!! ATAACACATTTATCAAAATA+GGG + chr3_1:67018022-67018041 None:intergenic 15.0%
!! AATAACACATTTATCAAAAT+AGG + chr3_1:67018023-67018042 None:intergenic 15.0%
!!! TGTGTTATTCTTTTATTTTT+TGG - chr3_1:67018034-67018053 Msa0369690:intron 15.0%
!!! GTGTTATTCTTTTATTTTTT+GGG - chr3_1:67018035-67018054 Msa0369690:intron 15.0%
!!! CTTGTTTTTGTTGATTAAAT+TGG + chr3_1:67017419-67017438 None:intergenic 20.0%
!! TAATCAACAAAAACAAGATT+TGG - chr3_1:67017422-67017441 Msa0369690:CDS 20.0%
!! AGTTATGGAAAATATTTAGT+GGG + chr3_1:67017571-67017590 None:intergenic 20.0%
!! TAGTTATGGAAAATATTTAG+TGG + chr3_1:67017572-67017591 None:intergenic 20.0%
!! TAAAGATTCAAGAATAGTTA+TGG + chr3_1:67017586-67017605 None:intergenic 20.0%
!!! GATAAAATAAAGTATCTTTC+GGG - chr3_1:67017719-67017738 Msa0369690:intron 20.0%
!!! ATAAAATAAAGTATCTTTCG+GGG - chr3_1:67017720-67017739 Msa0369690:intron 20.0%
!! TTTAATAAGATATGCTAAGT+TGG - chr3_1:67017850-67017869 Msa0369690:intron 20.0%
!! CACATATGTTATTATAATGT+AGG - chr3_1:67018102-67018121 Msa0369690:intron 20.0%
!! AGTTAAAAATATTGAGCATA+TGG - chr3_1:67018456-67018475 Msa0369690:CDS 20.0%
!!! CTTGTTTTTGTTGATTAAAT+TGG + chr3_1:67017419-67017438 None:intergenic 20.0%
!! TAATCAACAAAAACAAGATT+TGG - chr3_1:67017422-67017441 Msa0369690:CDS 20.0%
!! AGTTATGGAAAATATTTAGT+GGG + chr3_1:67017571-67017590 None:intergenic 20.0%
!! TAGTTATGGAAAATATTTAG+TGG + chr3_1:67017572-67017591 None:intergenic 20.0%
!! TAAAGATTCAAGAATAGTTA+TGG + chr3_1:67017586-67017605 None:intergenic 20.0%
!!! GATAAAATAAAGTATCTTTC+GGG - chr3_1:67017719-67017738 Msa0369690:intron 20.0%
!!! ATAAAATAAAGTATCTTTCG+GGG - chr3_1:67017720-67017739 Msa0369690:intron 20.0%
!! TTTAATAAGATATGCTAAGT+TGG - chr3_1:67017850-67017869 Msa0369690:intron 20.0%
!! CACATATGTTATTATAATGT+AGG - chr3_1:67018102-67018121 Msa0369690:intron 20.0%
!! AGTTAAAAATATTGAGCATA+TGG - chr3_1:67018456-67018475 Msa0369690:CDS 20.0%
!! TCTTTCGTTTGTTTGATTTA+AGG - chr3_1:67017981-67018000 Msa0369690:intron 25.0%
! ATAGTTATTGTGTTACAAGT+TGG + chr3_1:67018184-67018203 None:intergenic 25.0%
!! TCTTTCGTTTGTTTGATTTA+AGG - chr3_1:67017981-67018000 Msa0369690:intron 25.0%
! ATAGTTATTGTGTTACAAGT+TGG + chr3_1:67018184-67018203 None:intergenic 25.0%
! CTTGGTGGTCTTAATATTAA+TGG + chr3_1:67017116-67017135 None:intergenic 30.0%
CATTAATATTAAGACCACCA+AGG - chr3_1:67017114-67017133 Msa0369690:CDS 30.0%
AAAACAATCACTACTCCAAA+TGG - chr3_1:67017215-67017234 Msa0369690:CDS 30.0%
! CACTTGATGATTGTATAAGA+TGG - chr3_1:67017376-67017395 Msa0369690:CDS 30.0%
! TGTGTGAATTTGTTCTTTGA+GGG + chr3_1:67017472-67017491 None:intergenic 30.0%
! ACAGATATATTGATTAGTCC+AGG - chr3_1:67017489-67017508 Msa0369690:CDS 30.0%
AAAACAAGAACTCACCAAAA+CGG + chr3_1:67017547-67017566 None:intergenic 30.0%
!!! TCTCGGTGTAGTTTTTTTTT+TGG - chr3_1:67017762-67017781 Msa0369690:intron 30.0%
!!! CTCGGTGTAGTTTTTTTTTT+GGG - chr3_1:67017763-67017782 Msa0369690:intron 30.0%
! TACATTGCCTTTGGAAAAAT+TGG - chr3_1:67018258-67018277 Msa0369690:intron 30.0%
TTGTTCAAACCAAGATTTGA+AGG - chr3_1:67018414-67018433 Msa0369690:CDS 30.0%
TGCACAAAAGCTTCAAATTT+AGG + chr3_1:67018490-67018509 None:intergenic 30.0%
!! AATTTGAAGCTTTTGTGCAT+AGG - chr3_1:67018491-67018510 Msa0369690:CDS 30.0%
ACTAATTGCACAGTTAAATG+TGG + chr3_1:67018520-67018539 None:intergenic 30.0%
! CTTGGTGGTCTTAATATTAA+TGG + chr3_1:67017116-67017135 None:intergenic 30.0%
CATTAATATTAAGACCACCA+AGG - chr3_1:67017114-67017133 Msa0369690:CDS 30.0%
AAAACAATCACTACTCCAAA+TGG - chr3_1:67017215-67017234 Msa0369690:CDS 30.0%
! CACTTGATGATTGTATAAGA+TGG - chr3_1:67017376-67017395 Msa0369690:CDS 30.0%
! TGTGTGAATTTGTTCTTTGA+GGG + chr3_1:67017472-67017491 None:intergenic 30.0%
! ACAGATATATTGATTAGTCC+AGG - chr3_1:67017489-67017508 Msa0369690:CDS 30.0%
AAAACAAGAACTCACCAAAA+CGG + chr3_1:67017547-67017566 None:intergenic 30.0%
!!! TCTCGGTGTAGTTTTTTTTT+TGG - chr3_1:67017762-67017781 Msa0369690:intron 30.0%
!!! CTCGGTGTAGTTTTTTTTTT+GGG - chr3_1:67017763-67017782 Msa0369690:intron 30.0%
! TACATTGCCTTTGGAAAAAT+TGG - chr3_1:67018258-67018277 Msa0369690:intron 30.0%
TTGTTCAAACCAAGATTTGA+AGG - chr3_1:67018414-67018433 Msa0369690:CDS 30.0%
TGCACAAAAGCTTCAAATTT+AGG + chr3_1:67018490-67018509 None:intergenic 30.0%
!! AATTTGAAGCTTTTGTGCAT+AGG - chr3_1:67018491-67018510 Msa0369690:CDS 30.0%
ACTAATTGCACAGTTAAATG+TGG + chr3_1:67018520-67018539 None:intergenic 30.0%
CACCAAGGAATACAATATGT+GGG - chr3_1:67017129-67017148 Msa0369690:CDS 35.0%
ACCAAGGAATACAATATGTG+GGG - chr3_1:67017130-67017149 Msa0369690:CDS 35.0%
AGCATGATCAACATGATGAA+CGG - chr3_1:67017173-67017192 Msa0369690:CDS 35.0%
! CTGTGTGAATTTGTTCTTTG+AGG + chr3_1:67017473-67017492 None:intergenic 35.0%
AATCATTCTTATGCCCTGTT+TGG - chr3_1:67017614-67017633 Msa0369690:intron 35.0%
CAATGATGCTTATCCAAACA+GGG + chr3_1:67017630-67017649 None:intergenic 35.0%
TACTACTGTAGAGAAACTCT+AGG + chr3_1:67018240-67018259 None:intergenic 35.0%
! TGTGTCTCCAATTTTTCCAA+AGG + chr3_1:67018268-67018287 None:intergenic 35.0%
CACAGTATTTCAGCAAATGT+GGG + chr3_1:67018330-67018349 None:intergenic 35.0%
TCACAGTATTTCAGCAAATG+TGG + chr3_1:67018331-67018350 None:intergenic 35.0%
TAGTGTCTCAAATGCATTAG+AGG + chr3_1:67018380-67018399 None:intergenic 35.0%
!! GTTTCAAGAGCATTTGTGAA+TGG - chr3_1:67018538-67018557 Msa0369690:CDS 35.0%
CACCAAGGAATACAATATGT+GGG - chr3_1:67017129-67017148 Msa0369690:CDS 35.0%
ACCAAGGAATACAATATGTG+GGG - chr3_1:67017130-67017149 Msa0369690:CDS 35.0%
AGCATGATCAACATGATGAA+CGG - chr3_1:67017173-67017192 Msa0369690:CDS 35.0%
! CTGTGTGAATTTGTTCTTTG+AGG + chr3_1:67017473-67017492 None:intergenic 35.0%
AATCATTCTTATGCCCTGTT+TGG - chr3_1:67017614-67017633 Msa0369690:intron 35.0%
CAATGATGCTTATCCAAACA+GGG + chr3_1:67017630-67017649 None:intergenic 35.0%
TACTACTGTAGAGAAACTCT+AGG + chr3_1:67018240-67018259 None:intergenic 35.0%
! TGTGTCTCCAATTTTTCCAA+AGG + chr3_1:67018268-67018287 None:intergenic 35.0%
CACAGTATTTCAGCAAATGT+GGG + chr3_1:67018330-67018349 None:intergenic 35.0%
TCACAGTATTTCAGCAAATG+TGG + chr3_1:67018331-67018350 None:intergenic 35.0%
TAGTGTCTCAAATGCATTAG+AGG + chr3_1:67018380-67018399 None:intergenic 35.0%
!! GTTTCAAGAGCATTTGTGAA+TGG - chr3_1:67018538-67018557 Msa0369690:CDS 35.0%
CCACATATTGTATTCCTTGG+TGG + chr3_1:67017131-67017150 None:intergenic 40.0%
CCACCAAGGAATACAATATG+TGG - chr3_1:67017128-67017147 Msa0369690:CDS 40.0%
ATATGTGGGGCATGTTATGA+AGG - chr3_1:67017143-67017162 Msa0369690:CDS 40.0%
CAAATGGTTCTCCTATTTCG+CGG - chr3_1:67017231-67017250 Msa0369690:CDS 40.0%
! CAAGATTTGGCTTATCTCAG+AGG - chr3_1:67017435-67017454 Msa0369690:CDS 40.0%
! TTGATTAGTCCAGGCAATCA+TGG - chr3_1:67017498-67017517 Msa0369690:CDS 40.0%
GATTTATGTGCAGGTATAGG+TGG + chr3_1:67017525-67017544 None:intergenic 40.0%
ACGGATTTATGTGCAGGTAT+AGG + chr3_1:67017528-67017547 None:intergenic 40.0%
! ACCTGCACATAAATCCGTTT+TGG - chr3_1:67017530-67017549 Msa0369690:intron 40.0%
! ACCAAAACGGATTTATGTGC+AGG + chr3_1:67017534-67017553 None:intergenic 40.0%
CCAATGATGCTTATCCAAAC+AGG + chr3_1:67017631-67017650 None:intergenic 40.0%
CCTGTTTGGATAAGCATCAT+TGG - chr3_1:67017628-67017647 Msa0369690:intron 40.0%
TTGGATAAGCATCATTGGCA+AGG - chr3_1:67017633-67017652 Msa0369690:intron 40.0%
TGGATAAGCATCATTGGCAA+GGG - chr3_1:67017634-67017653 Msa0369690:intron 40.0%
!! ATTCTAGCTCTTCATGGTTC+AGG + chr3_1:67018213-67018232 None:intergenic 40.0%
CTACAGTAGTACATTGCCTT+TGG - chr3_1:67018249-67018268 Msa0369690:intron 40.0%
CCACATATTGTATTCCTTGG+TGG + chr3_1:67017131-67017150 None:intergenic 40.0%
CCACCAAGGAATACAATATG+TGG - chr3_1:67017128-67017147 Msa0369690:CDS 40.0%
ATATGTGGGGCATGTTATGA+AGG - chr3_1:67017143-67017162 Msa0369690:CDS 40.0%
CAAATGGTTCTCCTATTTCG+CGG - chr3_1:67017231-67017250 Msa0369690:CDS 40.0%
! CAAGATTTGGCTTATCTCAG+AGG - chr3_1:67017435-67017454 Msa0369690:CDS 40.0%
! TTGATTAGTCCAGGCAATCA+TGG - chr3_1:67017498-67017517 Msa0369690:CDS 40.0%
GATTTATGTGCAGGTATAGG+TGG + chr3_1:67017525-67017544 None:intergenic 40.0%
ACGGATTTATGTGCAGGTAT+AGG + chr3_1:67017528-67017547 None:intergenic 40.0%
! ACCTGCACATAAATCCGTTT+TGG - chr3_1:67017530-67017549 Msa0369690:intron 40.0%
! ACCAAAACGGATTTATGTGC+AGG + chr3_1:67017534-67017553 None:intergenic 40.0%
CCAATGATGCTTATCCAAAC+AGG + chr3_1:67017631-67017650 None:intergenic 40.0%
CCTGTTTGGATAAGCATCAT+TGG - chr3_1:67017628-67017647 Msa0369690:intron 40.0%
TTGGATAAGCATCATTGGCA+AGG - chr3_1:67017633-67017652 Msa0369690:intron 40.0%
TGGATAAGCATCATTGGCAA+GGG - chr3_1:67017634-67017653 Msa0369690:intron 40.0%
!! ATTCTAGCTCTTCATGGTTC+AGG + chr3_1:67018213-67018232 None:intergenic 40.0%
CTACAGTAGTACATTGCCTT+TGG - chr3_1:67018249-67018268 Msa0369690:intron 40.0%
GCCCCACATATTGTATTCCT+TGG + chr3_1:67017134-67017153 None:intergenic 45.0%
GGGCATGTTATGAAGGAGTT+AGG - chr3_1:67017150-67017169 Msa0369690:CDS 45.0%
CGCGAAATAGGAGAACCATT+TGG + chr3_1:67017233-67017252 None:intergenic 45.0%
CAATCATCAAGTGTCTGCAG+AGG + chr3_1:67017369-67017388 None:intergenic 45.0%
ACTACACCGAGATCAACCTT+GGG + chr3_1:67017754-67017773 None:intergenic 45.0%
AACTACACCGAGATCAACCT+TGG + chr3_1:67017755-67017774 None:intergenic 45.0%
!! GGAGAGATTCTAGCTCTTCA+TGG + chr3_1:67018219-67018238 None:intergenic 45.0%
AGGCTGTCTCCTTCAAATCT+TGG + chr3_1:67018426-67018445 None:intergenic 45.0%
GCCCCACATATTGTATTCCT+TGG + chr3_1:67017134-67017153 None:intergenic 45.0%
GGGCATGTTATGAAGGAGTT+AGG - chr3_1:67017150-67017169 Msa0369690:CDS 45.0%
CGCGAAATAGGAGAACCATT+TGG + chr3_1:67017233-67017252 None:intergenic 45.0%
CAATCATCAAGTGTCTGCAG+AGG + chr3_1:67017369-67017388 None:intergenic 45.0%
ACTACACCGAGATCAACCTT+GGG + chr3_1:67017754-67017773 None:intergenic 45.0%
AACTACACCGAGATCAACCT+TGG + chr3_1:67017755-67017774 None:intergenic 45.0%
!! GGAGAGATTCTAGCTCTTCA+TGG + chr3_1:67018219-67018238 None:intergenic 45.0%
AGGCTGTCTCCTTCAAATCT+TGG + chr3_1:67018426-67018445 None:intergenic 45.0%
CTCGAATTTCGCCGCGAAAT+AGG + chr3_1:67017245-67017264 None:intergenic 50.0%
TTCGCGGCGAAATTCGAGTA+AGG - chr3_1:67017247-67017266 Msa0369690:CDS 50.0%
ATAGGTGGACCATGATTGCC+TGG + chr3_1:67017510-67017529 None:intergenic 50.0%
! TTCTGCCCCAAGGTTGATCT+CGG - chr3_1:67017745-67017764 Msa0369690:intron 50.0%
CTACACCGAGATCAACCTTG+GGG + chr3_1:67017753-67017772 None:intergenic 50.0%
AGCTCTTCATGGTTCAGGTC+AGG + chr3_1:67018208-67018227 None:intergenic 50.0%
CTCGAATTTCGCCGCGAAAT+AGG + chr3_1:67017245-67017264 None:intergenic 50.0%
TTCGCGGCGAAATTCGAGTA+AGG - chr3_1:67017247-67017266 Msa0369690:CDS 50.0%
ATAGGTGGACCATGATTGCC+TGG + chr3_1:67017510-67017529 None:intergenic 50.0%
! TTCTGCCCCAAGGTTGATCT+CGG - chr3_1:67017745-67017764 Msa0369690:intron 50.0%
CTACACCGAGATCAACCTTG+GGG + chr3_1:67017753-67017772 None:intergenic 50.0%
AGCTCTTCATGGTTCAGGTC+AGG + chr3_1:67018208-67018227 None:intergenic 50.0%
! TTTCGGGGTTTTCTGCCCCA+AGG - chr3_1:67017735-67017754 Msa0369690:intron 55.0%
! TTTCGGGGTTTTCTGCCCCA+AGG - chr3_1:67017735-67017754 Msa0369690:intron 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 67017086 67018585 67017086 ID=Msa0369690;Name=Msa0369690
chr3_1 mRNA 67017086 67018585 67017086 ID=Msa0369690-mRNA-1;Parent=Msa0369690;Name=Msa0369690-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|0.5|0.33|3|0|258
chr3_1 exon 67018408 67018585 67018408 ID=Msa0369690-mRNA-1:exon:13729;Parent=Msa0369690-mRNA-1
chr3_1 exon 67018120 67018256 67018120 ID=Msa0369690-mRNA-1:exon:13728;Parent=Msa0369690-mRNA-1
chr3_1 exon 67017086 67017547 67017086 ID=Msa0369690-mRNA-1:exon:13727;Parent=Msa0369690-mRNA-1
chr3_1 CDS 67018408 67018585 67018408 ID=Msa0369690-mRNA-1:cds;Parent=Msa0369690-mRNA-1
chr3_1 CDS 67018120 67018256 67018120 ID=Msa0369690-mRNA-1:cds;Parent=Msa0369690-mRNA-1
chr3_1 CDS 67017086 67017547 67017086 ID=Msa0369690-mRNA-1:cds;Parent=Msa0369690-mRNA-1
Gene Sequence

>Msa0369690

ATGGATTGTTGTGTGTGTACAACTATGCCATTAATATTAAGACCACCAAGGAATACAATATGTGGGGCATGTTATGAAGGAGTTAGGAGCATGATCAACATGATGAACGGTCTTGAAACTGAGAAAGCAAAAACAATCACTACTCCAAATGGTTCTCCTATTTCGCGGCGAAATTCGAACCAATTTAATCAACAAAAACAAGATTTGGCTTATCTCAGAGGTTTTGCTGCTGCCCTCAAAGAACAAATTCACACAGATATATTGATTAGTCCAGGCAATCATGGTCCACCTATACCTGCACATAAATCCGTTTTGGCTGCAAGATCAGAAATTTTCAAGAATATGCTAGAGATTGATGAATGTAAAGCTGCACCAACTTGTAACACAATAACTATACCTGACCTGAACCATGAAGAGCTAGAATCTCTCCTAGAGTTTCTCTACAGTAGTACATTGCCTTTGGAAAAATTGGAGACACATGTGTATGCATTGTCACAAGCTGCTGATAAGTATATTATCCCACATTTGCTGAAATACTGTGAAAGATACTTGTTCAGCTCACTTAGCACCTCTAATGCATTTGAGACACTAGAAATTGCTGATACTTGTTCAAACCAAGATTTGAAGGAGACAGCCTTTAATTTCTTAGTTAAAAATATTGAGCATATGGTTACTTCTCCTAAATTTGAAGCTTTTGTGCATAGGAGTCCACATTTAACTGTGCAATTAGTTTCAAGAGCATTTGTGAATGGTTCAAAATTATCAATTTCTCTATAA

Protein sequence

>Msa0369690

MDCCVCTTMPLILRPPRNTICGACYEGVRSMINMMNGLETEKAKTITTPNGSPISRRNSNQFNQQKQDLAYLRGFAAALKEQIHTDILISPGNHGPPIPAHKSVLAARSEIFKNMLEIDECKAAPTCNTITIPDLNHEELESLLEFLYSSTLPLEKLETHVYALSQAADKYIIPHLLKYCERYLFSSLSTSNAFETLEIADTCSNQDLKETAFNFLVKNIEHMVTSPKFEAFVHRSPHLTVQLVSRAFVNGSKLSISL*