Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0369690 | XP_003601024.1 | 90.842 | 273 | 10 | 1 | 1 | 258 | 1 | 273 | 8.59e-180 | 505 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0369690 | sp|Q9LYL9|Y3623_ARATH | 44.364 | 275 | 125 | 6 | 1 | 249 | 1 | 273 | 2.84e-76 | 235 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0369690 | G7J2Y2 | 90.842 | 273 | 10 | 1 | 1 | 258 | 1 | 273 | 4.10e-180 | 505 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0369690 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0369690 | MtrunA17_Chr3g0114411 | 90.842 | 273 | 10 | 1 | 1 | 258 | 1 | 273 | 0.0 | 505 |
| Msa0369690 | MtrunA17_Chr3g0125321 | 29.101 | 189 | 123 | 5 | 61 | 243 | 53 | 236 | 1.70e-19 | 84.7 |
| Msa0369690 | MtrunA17_Chr5g0447111 | 30.814 | 172 | 115 | 3 | 47 | 218 | 127 | 294 | 1.65e-16 | 77.8 |
| Msa0369690 | MtrunA17_Chr3g0103031 | 32.759 | 174 | 111 | 4 | 46 | 218 | 125 | 293 | 4.12e-16 | 76.6 |
| Msa0369690 | MtrunA17_Chr5g0447191 | 34.426 | 122 | 77 | 2 | 79 | 200 | 20 | 138 | 6.97e-12 | 62.8 |
| Msa0369690 | MtrunA17_Chr5g0440341 | 26.455 | 189 | 109 | 5 | 75 | 244 | 191 | 368 | 5.92e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0369690 | AT3G56230.1 | 44.364 | 275 | 125 | 6 | 1 | 249 | 1 | 273 | 2.88e-77 | 235 |
| Msa0369690 | AT1G01640.1 | 46.073 | 191 | 97 | 4 | 64 | 253 | 3 | 188 | 1.27e-52 | 170 |
| Msa0369690 | AT1G01640.2 | 47.093 | 172 | 85 | 4 | 83 | 253 | 1 | 167 | 4.67e-47 | 155 |
| Msa0369690 | AT2G40450.1 | 38.919 | 185 | 108 | 3 | 65 | 244 | 4 | 188 | 4.01e-26 | 102 |
| Msa0369690 | AT5G48510.1 | 36.667 | 180 | 110 | 3 | 74 | 249 | 13 | 192 | 6.06e-25 | 99.4 |
| Msa0369690 | AT4G04090.1 | 32.955 | 176 | 116 | 2 | 75 | 248 | 14 | 189 | 5.37e-24 | 95.9 |
| Msa0369690 | AT2G05330.1 | 36.364 | 143 | 89 | 2 | 104 | 244 | 34 | 176 | 2.52e-20 | 86.7 |
| Msa0369690 | AT4G08455.1 | 33.129 | 163 | 100 | 6 | 85 | 243 | 91 | 248 | 1.53e-19 | 85.9 |
| Msa0369690 | AT2G05330.2 | 36.364 | 132 | 82 | 2 | 115 | 244 | 1 | 132 | 1.41e-16 | 75.5 |
| Msa0369690 | AT3G29740.1 | 46.154 | 78 | 39 | 1 | 71 | 145 | 10 | 87 | 1.57e-16 | 73.2 |
| Msa0369690 | AT1G21780.2 | 32.414 | 145 | 93 | 3 | 72 | 216 | 148 | 287 | 5.47e-12 | 65.1 |
| Msa0369690 | AT1G21780.1 | 32.414 | 145 | 93 | 3 | 72 | 216 | 148 | 287 | 5.47e-12 | 65.1 |
| Msa0369690 | AT4G37610.1 | 25.926 | 189 | 132 | 4 | 57 | 244 | 31 | 212 | 7.48e-11 | 62.0 |
Find 39 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGTGGTCTTAATATTAA+TGG | 0.168377 | 3_1:+67018536 | None:intergenic |
| TGCACAAAAGCTTCAAATTT+AGG | 0.202933 | 3_1:+67017162 | None:intergenic |
| TAGTGTCTCAAATGCATTAG+AGG | 0.315759 | 3_1:+67017272 | None:intergenic |
| CTCGAATTTCGCCGCGAAAT+AGG | 0.318434 | 3_1:+67018407 | None:intergenic |
| AGGCTGTCTCCTTCAAATCT+TGG | 0.335162 | 3_1:+67017226 | None:intergenic |
| CTACAGTAGTACATTGCCTT+TGG | 0.340071 | 3_1:-67017400 | Msa0369690:CDS |
| ACCTGCACATAAATCCGTTT+TGG | 0.358823 | 3_1:-67018119 | Msa0369690:intron |
| GGAGAGATTCTAGCTCTTCA+TGG | 0.366315 | 3_1:+67017433 | None:intergenic |
| ATTCTAGCTCTTCATGGTTC+AGG | 0.367741 | 3_1:+67017439 | None:intergenic |
| CTGTGTGAATTTGTTCTTTG+AGG | 0.404706 | 3_1:+67018179 | None:intergenic |
| ACGGATTTATGTGCAGGTAT+AGG | 0.430061 | 3_1:+67018124 | None:intergenic |
| GGGCATGTTATGAAGGAGTT+AGG | 0.432141 | 3_1:-67018499 | Msa0369690:CDS |
| TGTGTGAATTTGTTCTTTGA+GGG | 0.433559 | 3_1:+67018180 | None:intergenic |
| AGCTCTTCATGGTTCAGGTC+AGG | 0.435801 | 3_1:+67017444 | None:intergenic |
| GTTTCAAGAGCATTTGTGAA+TGG | 0.440008 | 3_1:-67017111 | Msa0369690:CDS |
| TTGTTCAAACCAAGATTTGA+AGG | 0.441270 | 3_1:-67017235 | Msa0369690:CDS |
| GCCCCACATATTGTATTCCT+TGG | 0.445705 | 3_1:+67018518 | None:intergenic |
| AAAACAATCACTACTCCAAA+TGG | 0.473612 | 3_1:-67018434 | Msa0369690:CDS |
| CCACATATTGTATTCCTTGG+TGG | 0.480024 | 3_1:+67018521 | None:intergenic |
| TCACAGTATTTCAGCAAATG+TGG | 0.504898 | 3_1:+67017321 | None:intergenic |
| CACAGTATTTCAGCAAATGT+GGG | 0.507721 | 3_1:+67017322 | None:intergenic |
| ATAGGTGGACCATGATTGCC+TGG | 0.517957 | 3_1:+67018142 | None:intergenic |
| ATAGTTATTGTGTTACAAGT+TGG | 0.522203 | 3_1:+67017468 | None:intergenic |
| CCACCAAGGAATACAATATG+TGG | 0.530946 | 3_1:-67018521 | Msa0369690:CDS |
| ACCAAAACGGATTTATGTGC+AGG | 0.533046 | 3_1:+67018118 | None:intergenic |
| ATATGTGGGGCATGTTATGA+AGG | 0.533797 | 3_1:-67018506 | Msa0369690:CDS |
| TTGATTAGTCCAGGCAATCA+TGG | 0.543484 | 3_1:-67018151 | Msa0369690:CDS |
| CGCGAAATAGGAGAACCATT+TGG | 0.543566 | 3_1:+67018419 | None:intergenic |
| CAAGATTTGGCTTATCTCAG+AGG | 0.546377 | 3_1:-67018214 | Msa0369690:CDS |
| CAAATGGTTCTCCTATTTCG+CGG | 0.549333 | 3_1:-67018418 | Msa0369690:CDS |
| AAAACAAGAACTCACCAAAA+CGG | 0.553720 | 3_1:+67018105 | None:intergenic |
| ACAGATATATTGATTAGTCC+AGG | 0.558976 | 3_1:-67018160 | Msa0369690:CDS |
| GATTTATGTGCAGGTATAGG+TGG | 0.598343 | 3_1:+67018127 | None:intergenic |
| CACCAAGGAATACAATATGT+GGG | 0.599288 | 3_1:-67018520 | Msa0369690:CDS |
| ACTAATTGCACAGTTAAATG+TGG | 0.601341 | 3_1:+67017132 | None:intergenic |
| TACTACTGTAGAGAAACTCT+AGG | 0.617790 | 3_1:+67017412 | None:intergenic |
| AGCATGATCAACATGATGAA+CGG | 0.624401 | 3_1:-67018476 | Msa0369690:CDS |
| ACCAAGGAATACAATATGTG+GGG | 0.680470 | 3_1:-67018519 | Msa0369690:CDS |
| CATTAATATTAAGACCACCA+AGG | 0.720929 | 3_1:-67018535 | Msa0369690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTAACTAAGAAATTAA+AGG | + | chr3_1:67018446-67018465 | None:intergenic | 10.0% |
| !!! | ATTTTTAACTAAGAAATTAA+AGG | + | chr3_1:67018446-67018465 | None:intergenic | 10.0% |
| !!! | TAATTCTTTTCATAATTCTA+TGG | - | chr3_1:67017277-67017296 | Msa0369690:CDS | 15.0% |
| !! | TAGAATAATTAAATTATGCA+TGG | + | chr3_1:67017691-67017710 | None:intergenic | 15.0% |
| !!! | AGATAAAATAAAGTATCTTT+CGG | - | chr3_1:67017718-67017737 | Msa0369690:intron | 15.0% |
| !!! | TTTTTTTTTGTTTACACAAA+GGG | + | chr3_1:67017796-67017815 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTGTTTACACAA+AGG | + | chr3_1:67017797-67017816 | None:intergenic | 15.0% |
| !! | TTTGTGTAAACAAAAAAAAA+AGG | - | chr3_1:67017796-67017815 | Msa0369690:intron | 15.0% |
| !! | ATAACACATTTATCAAAATA+GGG | + | chr3_1:67018022-67018041 | None:intergenic | 15.0% |
| !! | AATAACACATTTATCAAAAT+AGG | + | chr3_1:67018023-67018042 | None:intergenic | 15.0% |
| !!! | TGTGTTATTCTTTTATTTTT+TGG | - | chr3_1:67018034-67018053 | Msa0369690:intron | 15.0% |
| !!! | GTGTTATTCTTTTATTTTTT+GGG | - | chr3_1:67018035-67018054 | Msa0369690:intron | 15.0% |
| !!! | TAATTCTTTTCATAATTCTA+TGG | - | chr3_1:67017277-67017296 | Msa0369690:CDS | 15.0% |
| !! | TAGAATAATTAAATTATGCA+TGG | + | chr3_1:67017691-67017710 | None:intergenic | 15.0% |
| !!! | AGATAAAATAAAGTATCTTT+CGG | - | chr3_1:67017718-67017737 | Msa0369690:intron | 15.0% |
| !!! | TTTTTTTTTGTTTACACAAA+GGG | + | chr3_1:67017796-67017815 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTGTTTACACAA+AGG | + | chr3_1:67017797-67017816 | None:intergenic | 15.0% |
| !! | TTTGTGTAAACAAAAAAAAA+AGG | - | chr3_1:67017796-67017815 | Msa0369690:intron | 15.0% |
| !! | ATAACACATTTATCAAAATA+GGG | + | chr3_1:67018022-67018041 | None:intergenic | 15.0% |
| !! | AATAACACATTTATCAAAAT+AGG | + | chr3_1:67018023-67018042 | None:intergenic | 15.0% |
| !!! | TGTGTTATTCTTTTATTTTT+TGG | - | chr3_1:67018034-67018053 | Msa0369690:intron | 15.0% |
| !!! | GTGTTATTCTTTTATTTTTT+GGG | - | chr3_1:67018035-67018054 | Msa0369690:intron | 15.0% |
| !!! | CTTGTTTTTGTTGATTAAAT+TGG | + | chr3_1:67017419-67017438 | None:intergenic | 20.0% |
| !! | TAATCAACAAAAACAAGATT+TGG | - | chr3_1:67017422-67017441 | Msa0369690:CDS | 20.0% |
| !! | AGTTATGGAAAATATTTAGT+GGG | + | chr3_1:67017571-67017590 | None:intergenic | 20.0% |
| !! | TAGTTATGGAAAATATTTAG+TGG | + | chr3_1:67017572-67017591 | None:intergenic | 20.0% |
| !! | TAAAGATTCAAGAATAGTTA+TGG | + | chr3_1:67017586-67017605 | None:intergenic | 20.0% |
| !!! | GATAAAATAAAGTATCTTTC+GGG | - | chr3_1:67017719-67017738 | Msa0369690:intron | 20.0% |
| !!! | ATAAAATAAAGTATCTTTCG+GGG | - | chr3_1:67017720-67017739 | Msa0369690:intron | 20.0% |
| !! | TTTAATAAGATATGCTAAGT+TGG | - | chr3_1:67017850-67017869 | Msa0369690:intron | 20.0% |
| !! | CACATATGTTATTATAATGT+AGG | - | chr3_1:67018102-67018121 | Msa0369690:intron | 20.0% |
| !! | AGTTAAAAATATTGAGCATA+TGG | - | chr3_1:67018456-67018475 | Msa0369690:CDS | 20.0% |
| !!! | CTTGTTTTTGTTGATTAAAT+TGG | + | chr3_1:67017419-67017438 | None:intergenic | 20.0% |
| !! | TAATCAACAAAAACAAGATT+TGG | - | chr3_1:67017422-67017441 | Msa0369690:CDS | 20.0% |
| !! | AGTTATGGAAAATATTTAGT+GGG | + | chr3_1:67017571-67017590 | None:intergenic | 20.0% |
| !! | TAGTTATGGAAAATATTTAG+TGG | + | chr3_1:67017572-67017591 | None:intergenic | 20.0% |
| !! | TAAAGATTCAAGAATAGTTA+TGG | + | chr3_1:67017586-67017605 | None:intergenic | 20.0% |
| !!! | GATAAAATAAAGTATCTTTC+GGG | - | chr3_1:67017719-67017738 | Msa0369690:intron | 20.0% |
| !!! | ATAAAATAAAGTATCTTTCG+GGG | - | chr3_1:67017720-67017739 | Msa0369690:intron | 20.0% |
| !! | TTTAATAAGATATGCTAAGT+TGG | - | chr3_1:67017850-67017869 | Msa0369690:intron | 20.0% |
| !! | CACATATGTTATTATAATGT+AGG | - | chr3_1:67018102-67018121 | Msa0369690:intron | 20.0% |
| !! | AGTTAAAAATATTGAGCATA+TGG | - | chr3_1:67018456-67018475 | Msa0369690:CDS | 20.0% |
| !! | TCTTTCGTTTGTTTGATTTA+AGG | - | chr3_1:67017981-67018000 | Msa0369690:intron | 25.0% |
| ! | ATAGTTATTGTGTTACAAGT+TGG | + | chr3_1:67018184-67018203 | None:intergenic | 25.0% |
| !! | TCTTTCGTTTGTTTGATTTA+AGG | - | chr3_1:67017981-67018000 | Msa0369690:intron | 25.0% |
| ! | ATAGTTATTGTGTTACAAGT+TGG | + | chr3_1:67018184-67018203 | None:intergenic | 25.0% |
| ! | CTTGGTGGTCTTAATATTAA+TGG | + | chr3_1:67017116-67017135 | None:intergenic | 30.0% |
| CATTAATATTAAGACCACCA+AGG | - | chr3_1:67017114-67017133 | Msa0369690:CDS | 30.0% | |
| AAAACAATCACTACTCCAAA+TGG | - | chr3_1:67017215-67017234 | Msa0369690:CDS | 30.0% | |
| ! | CACTTGATGATTGTATAAGA+TGG | - | chr3_1:67017376-67017395 | Msa0369690:CDS | 30.0% |
| ! | TGTGTGAATTTGTTCTTTGA+GGG | + | chr3_1:67017472-67017491 | None:intergenic | 30.0% |
| ! | ACAGATATATTGATTAGTCC+AGG | - | chr3_1:67017489-67017508 | Msa0369690:CDS | 30.0% |
| AAAACAAGAACTCACCAAAA+CGG | + | chr3_1:67017547-67017566 | None:intergenic | 30.0% | |
| !!! | TCTCGGTGTAGTTTTTTTTT+TGG | - | chr3_1:67017762-67017781 | Msa0369690:intron | 30.0% |
| !!! | CTCGGTGTAGTTTTTTTTTT+GGG | - | chr3_1:67017763-67017782 | Msa0369690:intron | 30.0% |
| ! | TACATTGCCTTTGGAAAAAT+TGG | - | chr3_1:67018258-67018277 | Msa0369690:intron | 30.0% |
| TTGTTCAAACCAAGATTTGA+AGG | - | chr3_1:67018414-67018433 | Msa0369690:CDS | 30.0% | |
| TGCACAAAAGCTTCAAATTT+AGG | + | chr3_1:67018490-67018509 | None:intergenic | 30.0% | |
| !! | AATTTGAAGCTTTTGTGCAT+AGG | - | chr3_1:67018491-67018510 | Msa0369690:CDS | 30.0% |
| ACTAATTGCACAGTTAAATG+TGG | + | chr3_1:67018520-67018539 | None:intergenic | 30.0% | |
| ! | CTTGGTGGTCTTAATATTAA+TGG | + | chr3_1:67017116-67017135 | None:intergenic | 30.0% |
| CATTAATATTAAGACCACCA+AGG | - | chr3_1:67017114-67017133 | Msa0369690:CDS | 30.0% | |
| AAAACAATCACTACTCCAAA+TGG | - | chr3_1:67017215-67017234 | Msa0369690:CDS | 30.0% | |
| ! | CACTTGATGATTGTATAAGA+TGG | - | chr3_1:67017376-67017395 | Msa0369690:CDS | 30.0% |
| ! | TGTGTGAATTTGTTCTTTGA+GGG | + | chr3_1:67017472-67017491 | None:intergenic | 30.0% |
| ! | ACAGATATATTGATTAGTCC+AGG | - | chr3_1:67017489-67017508 | Msa0369690:CDS | 30.0% |
| AAAACAAGAACTCACCAAAA+CGG | + | chr3_1:67017547-67017566 | None:intergenic | 30.0% | |
| !!! | TCTCGGTGTAGTTTTTTTTT+TGG | - | chr3_1:67017762-67017781 | Msa0369690:intron | 30.0% |
| !!! | CTCGGTGTAGTTTTTTTTTT+GGG | - | chr3_1:67017763-67017782 | Msa0369690:intron | 30.0% |
| ! | TACATTGCCTTTGGAAAAAT+TGG | - | chr3_1:67018258-67018277 | Msa0369690:intron | 30.0% |
| TTGTTCAAACCAAGATTTGA+AGG | - | chr3_1:67018414-67018433 | Msa0369690:CDS | 30.0% | |
| TGCACAAAAGCTTCAAATTT+AGG | + | chr3_1:67018490-67018509 | None:intergenic | 30.0% | |
| !! | AATTTGAAGCTTTTGTGCAT+AGG | - | chr3_1:67018491-67018510 | Msa0369690:CDS | 30.0% |
| ACTAATTGCACAGTTAAATG+TGG | + | chr3_1:67018520-67018539 | None:intergenic | 30.0% | |
| CACCAAGGAATACAATATGT+GGG | - | chr3_1:67017129-67017148 | Msa0369690:CDS | 35.0% | |
| ACCAAGGAATACAATATGTG+GGG | - | chr3_1:67017130-67017149 | Msa0369690:CDS | 35.0% | |
| AGCATGATCAACATGATGAA+CGG | - | chr3_1:67017173-67017192 | Msa0369690:CDS | 35.0% | |
| ! | CTGTGTGAATTTGTTCTTTG+AGG | + | chr3_1:67017473-67017492 | None:intergenic | 35.0% |
| AATCATTCTTATGCCCTGTT+TGG | - | chr3_1:67017614-67017633 | Msa0369690:intron | 35.0% | |
| CAATGATGCTTATCCAAACA+GGG | + | chr3_1:67017630-67017649 | None:intergenic | 35.0% | |
| TACTACTGTAGAGAAACTCT+AGG | + | chr3_1:67018240-67018259 | None:intergenic | 35.0% | |
| ! | TGTGTCTCCAATTTTTCCAA+AGG | + | chr3_1:67018268-67018287 | None:intergenic | 35.0% |
| CACAGTATTTCAGCAAATGT+GGG | + | chr3_1:67018330-67018349 | None:intergenic | 35.0% | |
| TCACAGTATTTCAGCAAATG+TGG | + | chr3_1:67018331-67018350 | None:intergenic | 35.0% | |
| TAGTGTCTCAAATGCATTAG+AGG | + | chr3_1:67018380-67018399 | None:intergenic | 35.0% | |
| !! | GTTTCAAGAGCATTTGTGAA+TGG | - | chr3_1:67018538-67018557 | Msa0369690:CDS | 35.0% |
| CACCAAGGAATACAATATGT+GGG | - | chr3_1:67017129-67017148 | Msa0369690:CDS | 35.0% | |
| ACCAAGGAATACAATATGTG+GGG | - | chr3_1:67017130-67017149 | Msa0369690:CDS | 35.0% | |
| AGCATGATCAACATGATGAA+CGG | - | chr3_1:67017173-67017192 | Msa0369690:CDS | 35.0% | |
| ! | CTGTGTGAATTTGTTCTTTG+AGG | + | chr3_1:67017473-67017492 | None:intergenic | 35.0% |
| AATCATTCTTATGCCCTGTT+TGG | - | chr3_1:67017614-67017633 | Msa0369690:intron | 35.0% | |
| CAATGATGCTTATCCAAACA+GGG | + | chr3_1:67017630-67017649 | None:intergenic | 35.0% | |
| TACTACTGTAGAGAAACTCT+AGG | + | chr3_1:67018240-67018259 | None:intergenic | 35.0% | |
| ! | TGTGTCTCCAATTTTTCCAA+AGG | + | chr3_1:67018268-67018287 | None:intergenic | 35.0% |
| CACAGTATTTCAGCAAATGT+GGG | + | chr3_1:67018330-67018349 | None:intergenic | 35.0% | |
| TCACAGTATTTCAGCAAATG+TGG | + | chr3_1:67018331-67018350 | None:intergenic | 35.0% | |
| TAGTGTCTCAAATGCATTAG+AGG | + | chr3_1:67018380-67018399 | None:intergenic | 35.0% | |
| !! | GTTTCAAGAGCATTTGTGAA+TGG | - | chr3_1:67018538-67018557 | Msa0369690:CDS | 35.0% |
| CCACATATTGTATTCCTTGG+TGG | + | chr3_1:67017131-67017150 | None:intergenic | 40.0% | |
| CCACCAAGGAATACAATATG+TGG | - | chr3_1:67017128-67017147 | Msa0369690:CDS | 40.0% | |
| ATATGTGGGGCATGTTATGA+AGG | - | chr3_1:67017143-67017162 | Msa0369690:CDS | 40.0% | |
| CAAATGGTTCTCCTATTTCG+CGG | - | chr3_1:67017231-67017250 | Msa0369690:CDS | 40.0% | |
| ! | CAAGATTTGGCTTATCTCAG+AGG | - | chr3_1:67017435-67017454 | Msa0369690:CDS | 40.0% |
| ! | TTGATTAGTCCAGGCAATCA+TGG | - | chr3_1:67017498-67017517 | Msa0369690:CDS | 40.0% |
| GATTTATGTGCAGGTATAGG+TGG | + | chr3_1:67017525-67017544 | None:intergenic | 40.0% | |
| ACGGATTTATGTGCAGGTAT+AGG | + | chr3_1:67017528-67017547 | None:intergenic | 40.0% | |
| ! | ACCTGCACATAAATCCGTTT+TGG | - | chr3_1:67017530-67017549 | Msa0369690:intron | 40.0% |
| ! | ACCAAAACGGATTTATGTGC+AGG | + | chr3_1:67017534-67017553 | None:intergenic | 40.0% |
| CCAATGATGCTTATCCAAAC+AGG | + | chr3_1:67017631-67017650 | None:intergenic | 40.0% | |
| CCTGTTTGGATAAGCATCAT+TGG | - | chr3_1:67017628-67017647 | Msa0369690:intron | 40.0% | |
| TTGGATAAGCATCATTGGCA+AGG | - | chr3_1:67017633-67017652 | Msa0369690:intron | 40.0% | |
| TGGATAAGCATCATTGGCAA+GGG | - | chr3_1:67017634-67017653 | Msa0369690:intron | 40.0% | |
| !! | ATTCTAGCTCTTCATGGTTC+AGG | + | chr3_1:67018213-67018232 | None:intergenic | 40.0% |
| CTACAGTAGTACATTGCCTT+TGG | - | chr3_1:67018249-67018268 | Msa0369690:intron | 40.0% | |
| CCACATATTGTATTCCTTGG+TGG | + | chr3_1:67017131-67017150 | None:intergenic | 40.0% | |
| CCACCAAGGAATACAATATG+TGG | - | chr3_1:67017128-67017147 | Msa0369690:CDS | 40.0% | |
| ATATGTGGGGCATGTTATGA+AGG | - | chr3_1:67017143-67017162 | Msa0369690:CDS | 40.0% | |
| CAAATGGTTCTCCTATTTCG+CGG | - | chr3_1:67017231-67017250 | Msa0369690:CDS | 40.0% | |
| ! | CAAGATTTGGCTTATCTCAG+AGG | - | chr3_1:67017435-67017454 | Msa0369690:CDS | 40.0% |
| ! | TTGATTAGTCCAGGCAATCA+TGG | - | chr3_1:67017498-67017517 | Msa0369690:CDS | 40.0% |
| GATTTATGTGCAGGTATAGG+TGG | + | chr3_1:67017525-67017544 | None:intergenic | 40.0% | |
| ACGGATTTATGTGCAGGTAT+AGG | + | chr3_1:67017528-67017547 | None:intergenic | 40.0% | |
| ! | ACCTGCACATAAATCCGTTT+TGG | - | chr3_1:67017530-67017549 | Msa0369690:intron | 40.0% |
| ! | ACCAAAACGGATTTATGTGC+AGG | + | chr3_1:67017534-67017553 | None:intergenic | 40.0% |
| CCAATGATGCTTATCCAAAC+AGG | + | chr3_1:67017631-67017650 | None:intergenic | 40.0% | |
| CCTGTTTGGATAAGCATCAT+TGG | - | chr3_1:67017628-67017647 | Msa0369690:intron | 40.0% | |
| TTGGATAAGCATCATTGGCA+AGG | - | chr3_1:67017633-67017652 | Msa0369690:intron | 40.0% | |
| TGGATAAGCATCATTGGCAA+GGG | - | chr3_1:67017634-67017653 | Msa0369690:intron | 40.0% | |
| !! | ATTCTAGCTCTTCATGGTTC+AGG | + | chr3_1:67018213-67018232 | None:intergenic | 40.0% |
| CTACAGTAGTACATTGCCTT+TGG | - | chr3_1:67018249-67018268 | Msa0369690:intron | 40.0% | |
| GCCCCACATATTGTATTCCT+TGG | + | chr3_1:67017134-67017153 | None:intergenic | 45.0% | |
| GGGCATGTTATGAAGGAGTT+AGG | - | chr3_1:67017150-67017169 | Msa0369690:CDS | 45.0% | |
| CGCGAAATAGGAGAACCATT+TGG | + | chr3_1:67017233-67017252 | None:intergenic | 45.0% | |
| CAATCATCAAGTGTCTGCAG+AGG | + | chr3_1:67017369-67017388 | None:intergenic | 45.0% | |
| ACTACACCGAGATCAACCTT+GGG | + | chr3_1:67017754-67017773 | None:intergenic | 45.0% | |
| AACTACACCGAGATCAACCT+TGG | + | chr3_1:67017755-67017774 | None:intergenic | 45.0% | |
| !! | GGAGAGATTCTAGCTCTTCA+TGG | + | chr3_1:67018219-67018238 | None:intergenic | 45.0% |
| AGGCTGTCTCCTTCAAATCT+TGG | + | chr3_1:67018426-67018445 | None:intergenic | 45.0% | |
| GCCCCACATATTGTATTCCT+TGG | + | chr3_1:67017134-67017153 | None:intergenic | 45.0% | |
| GGGCATGTTATGAAGGAGTT+AGG | - | chr3_1:67017150-67017169 | Msa0369690:CDS | 45.0% | |
| CGCGAAATAGGAGAACCATT+TGG | + | chr3_1:67017233-67017252 | None:intergenic | 45.0% | |
| CAATCATCAAGTGTCTGCAG+AGG | + | chr3_1:67017369-67017388 | None:intergenic | 45.0% | |
| ACTACACCGAGATCAACCTT+GGG | + | chr3_1:67017754-67017773 | None:intergenic | 45.0% | |
| AACTACACCGAGATCAACCT+TGG | + | chr3_1:67017755-67017774 | None:intergenic | 45.0% | |
| !! | GGAGAGATTCTAGCTCTTCA+TGG | + | chr3_1:67018219-67018238 | None:intergenic | 45.0% |
| AGGCTGTCTCCTTCAAATCT+TGG | + | chr3_1:67018426-67018445 | None:intergenic | 45.0% | |
| CTCGAATTTCGCCGCGAAAT+AGG | + | chr3_1:67017245-67017264 | None:intergenic | 50.0% | |
| TTCGCGGCGAAATTCGAGTA+AGG | - | chr3_1:67017247-67017266 | Msa0369690:CDS | 50.0% | |
| ATAGGTGGACCATGATTGCC+TGG | + | chr3_1:67017510-67017529 | None:intergenic | 50.0% | |
| ! | TTCTGCCCCAAGGTTGATCT+CGG | - | chr3_1:67017745-67017764 | Msa0369690:intron | 50.0% |
| CTACACCGAGATCAACCTTG+GGG | + | chr3_1:67017753-67017772 | None:intergenic | 50.0% | |
| AGCTCTTCATGGTTCAGGTC+AGG | + | chr3_1:67018208-67018227 | None:intergenic | 50.0% | |
| CTCGAATTTCGCCGCGAAAT+AGG | + | chr3_1:67017245-67017264 | None:intergenic | 50.0% | |
| TTCGCGGCGAAATTCGAGTA+AGG | - | chr3_1:67017247-67017266 | Msa0369690:CDS | 50.0% | |
| ATAGGTGGACCATGATTGCC+TGG | + | chr3_1:67017510-67017529 | None:intergenic | 50.0% | |
| ! | TTCTGCCCCAAGGTTGATCT+CGG | - | chr3_1:67017745-67017764 | Msa0369690:intron | 50.0% |
| CTACACCGAGATCAACCTTG+GGG | + | chr3_1:67017753-67017772 | None:intergenic | 50.0% | |
| AGCTCTTCATGGTTCAGGTC+AGG | + | chr3_1:67018208-67018227 | None:intergenic | 50.0% | |
| ! | TTTCGGGGTTTTCTGCCCCA+AGG | - | chr3_1:67017735-67017754 | Msa0369690:intron | 55.0% |
| ! | TTTCGGGGTTTTCTGCCCCA+AGG | - | chr3_1:67017735-67017754 | Msa0369690:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 67017086 | 67018585 | 67017086 | ID=Msa0369690;Name=Msa0369690 |
| chr3_1 | mRNA | 67017086 | 67018585 | 67017086 | ID=Msa0369690-mRNA-1;Parent=Msa0369690;Name=Msa0369690-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|0.5|0.33|3|0|258 |
| chr3_1 | exon | 67018408 | 67018585 | 67018408 | ID=Msa0369690-mRNA-1:exon:13729;Parent=Msa0369690-mRNA-1 |
| chr3_1 | exon | 67018120 | 67018256 | 67018120 | ID=Msa0369690-mRNA-1:exon:13728;Parent=Msa0369690-mRNA-1 |
| chr3_1 | exon | 67017086 | 67017547 | 67017086 | ID=Msa0369690-mRNA-1:exon:13727;Parent=Msa0369690-mRNA-1 |
| chr3_1 | CDS | 67018408 | 67018585 | 67018408 | ID=Msa0369690-mRNA-1:cds;Parent=Msa0369690-mRNA-1 |
| chr3_1 | CDS | 67018120 | 67018256 | 67018120 | ID=Msa0369690-mRNA-1:cds;Parent=Msa0369690-mRNA-1 |
| chr3_1 | CDS | 67017086 | 67017547 | 67017086 | ID=Msa0369690-mRNA-1:cds;Parent=Msa0369690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
