AlfalfaGEDB | Msa0370090

M. sativa cultivar zhongmu-4 / Msa0370090

KEGG: K08866
GO: GO:0000228 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004672 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005813 GO:0005815 GO:0005856 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0015630 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044454 GO:0044464 GO:0070013 GO:0071704 GO:0098687 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0370090	XP_003601096.1	95.013	742	36	1	1	742	1	741	0.0	1435

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0370090	sp\|Q84VX4\|MPS1_ARATH	53.646	768	271	15	18	736	39	770	0.0	745

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0370090	G7J3L3	95.013	742	36	1	1	742	1	741	0.0	1435

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0370090	MtrunA17_Chr3g0115051	95.013	742	36	1	1	742	1	741	0.0	1435
Msa0370090	MtrunA17_Chr5g0424251	63.144	757	216	12	1	742	1	709	0.0	897
Msa0370090	MtrunA17_Chr4g0000481	27.184	309	157	10	365	658	85	340	1.34e-22	100
Msa0370090	MtrunA17_Chr3g0115171	29.492	295	138	12	378	657	297	536	1.81e-22	102
Msa0370090	MtrunA17_Chr5g0424651	27.852	298	167	11	364	657	321	574	7.69e-22	100
Msa0370090	MtrunA17_Chr5g0424581	27.852	298	167	11	364	657	125	378	1.16e-21	98.2
Msa0370090	MtrunA17_Chr5g0424501	28.523	298	165	12	364	657	192	445	2.03e-21	98.2
Msa0370090	MtrunA17_Chr8g0386981	31.142	289	149	11	390	672	435	679	2.08e-21	99.8
Msa0370090	MtrunA17_Chr8g0384301	31.621	253	124	10	409	657	348	555	3.60e-21	98.6
Msa0370090	MtrunA17_Chr1g0202831	28.803	309	161	12	360	657	407	667	5.29e-21	98.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0370090	AT1G77720.1	53.646	768	271	15	18	736	39	770	0.0	745
Msa0370090	AT4G08470.1	29.252	294	157	10	370	657	309	557	8.48e-24	106
Msa0370090	AT4G08470.3	28.912	294	158	10	370	657	227	475	7.35e-23	103
Msa0370090	AT3G21220.2	28.763	299	163	13	365	657	71	325	7.93e-22	98.2
Msa0370090	AT3G21220.1	28.763	299	163	13	365	657	71	325	7.93e-22	98.2
Msa0370090	AT4G08500.1	27.797	295	172	10	364	657	333	587	3.30e-21	99.0
Msa0370090	AT4G29810.1	30.986	213	119	9	454	657	137	330	3.57e-21	96.7
Msa0370090	AT4G29810.2	30.986	213	119	9	454	657	146	339	4.48e-21	96.3
Msa0370090	AT1G63700.1	29.412	323	150	16	361	663	397	661	6.16e-21	99.0
Msa0370090	AT1G63700.2	29.412	323	150	16	361	663	397	661	6.16e-21	99.0

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Find 179 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAACCCAAAATTCAGC+AGG	0.492014	3_1:+67566662	Msa0370090:CDS
AAAGGATGTTGGAGTAACTG+AGG	0.603950	3_1:-67569693	None:intergenic
AAATGTCTTGTATTCTGAAA+AGG	0.380934	3_1:-67569544	None:intergenic
AAATTGAAATTGAAATGCGG+TGG	0.668725	3_1:+67565861	Msa0370090:five_prime_UTR
AACATTAGCATCTTGAGAAG+GGG	0.610871	3_1:-67566190	None:intergenic
AACCAAGCGGAAGCTTCGAT+TGG	0.512646	3_1:+67566624	Msa0370090:CDS
AACCACTATCTAGATGCAAA+CGG	0.512452	3_1:-67566887	None:intergenic
AACGGAAACATTATCAAGTG+TGG	0.632047	3_1:+67569459	Msa0370090:CDS
AAGAGATCGAATATCTAAAT+AGG	0.303126	3_1:+67567504	Msa0370090:CDS
AAGGTTAGACTTCCCATCCA+TGG	0.543192	3_1:-67565892	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTGAAATTGAAATGCGG+TGG	+	chr3_1:67565861-67565880	Msa0370090:five_prime_UTR	30.0%
AAAAACAGAAAATTACCCTG+TGG	-	chr3_1:67566228-67566247	None:intergenic	30.0%
AGACAAATTATCCAACTCAA+TGG	-	chr3_1:67566556-67566575	None:intergenic	30.0%
ACAGAAATGGAGTATATAGA+AGG	+	chr3_1:67566600-67566619	Msa0370090:CDS	30.0%
GAATGCATGTTAAAAGAATC+TGG	+	chr3_1:67567113-67567132	Msa0370090:CDS	30.0%
TAAGTTAGAAAAACCAGAGA+AGG	+	chr3_1:67567265-67567284	Msa0370090:CDS	30.0%
ACTTAAGAAGATCAAACTCA+GGG	+	chr3_1:67567448-67567467	Msa0370090:CDS	30.0%
AATCACTTATTGCATTCTCA+TGG	+	chr3_1:67567675-67567694	Msa0370090:intron	30.0%
TTGCTTGAACAAGTTATGAA+AGG	+	chr3_1:67567849-67567868	Msa0370090:CDS	30.0%
AGTATCACTCATTATTGCTT+TGG	-	chr3_1:67568447-67568466	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	67565852	67570190	67565852	ID=Msa0370090;Name=Msa0370090
chr3_1	mRNA	67565852	67570190	67565852	ID=Msa0370090-mRNA-1;Parent=Msa0370090;Name=Msa0370090-mRNA-1;_AED=0.08;_eAED=0.08;_QI=42\|1\|1\|1\|1\|1\|6\|213\|742
chr3_1	exon	67565852	67565996	67565852	ID=Msa0370090-mRNA-1:exon:13945;Parent=Msa0370090-mRNA-1
chr3_1	exon	67566079	67566231	67566079	ID=Msa0370090-mRNA-1:exon:13946;Parent=Msa0370090-mRNA-1
chr3_1	exon	67566535	67567568	67566535	ID=Msa0370090-mRNA-1:exon:13947;Parent=Msa0370090-mRNA-1
chr3_1	exon	67567834	67568034	67567834	ID=Msa0370090-mRNA-1:exon:13948;Parent=Msa0370090-mRNA-1
chr3_1	exon	67568329	67568490	67568329	ID=Msa0370090-mRNA-1:exon:13949;Parent=Msa0370090-mRNA-1
chr3_1	exon	67569402	67570190	67569402	ID=Msa0370090-mRNA-1:exon:13950;Parent=Msa0370090-mRNA-1
chr3_1	five_prime_UTR	67565852	67565893	67565852	ID=Msa0370090-mRNA-1:five_prime_utr;Parent=Msa0370090-mRNA-1
chr3_1	CDS	67565894	67565996	67565894	ID=Msa0370090-mRNA-1:cds;Parent=Msa0370090-mRNA-1
chr3_1	CDS	67566079	67566231	67566079	ID=Msa0370090-mRNA-1:cds;Parent=Msa0370090-mRNA-1
chr3_1	CDS	67566535	67567568	67566535	ID=Msa0370090-mRNA-1:cds;Parent=Msa0370090-mRNA-1
chr3_1	CDS	67567834	67568034	67567834	ID=Msa0370090-mRNA-1:cds;Parent=Msa0370090-mRNA-1
chr3_1	CDS	67568329	67568490	67568329	ID=Msa0370090-mRNA-1:cds;Parent=Msa0370090-mRNA-1
chr3_1	CDS	67569402	67569977	67569402	ID=Msa0370090-mRNA-1:cds;Parent=Msa0370090-mRNA-1
chr3_1	three_prime_UTR	67569978	67570190	67569978	ID=Msa0370090-mRNA-1:three_prime_utr;Parent=Msa0370090-mRNA-1

Gene Sequence

>Msa0370090

ATGGATGGGAAGTCTAACCTTCCGATCAAGTCTGATTCCTCTTCTTCCCCACCGGACTTCCTCCGCCACGTTCAAGCCGCCTTGAAGCGTCACCGTCCTCTCGGTACAGGGCAATCCAATATCATTAGGCCAAGACGCACAATTCTTCGTCAACCAAAGCATGATTCAATCTCGAACACAAACAATGATTCACTTGAAACTAGCACTGTTATTGCCCCTTCTCAAGATGCTAATGTTCACAGTAAAGTTCCACAGGGGGCCAATGATGAAAAGGCCATTGAGTTGGATAATTTGTCTTCTTACATGAGTTCACTTGGATTCACAGAAATGGAGTATATAGAAGGCAACCAAGCGGAAGCTTCGATTGGATTACACGATGATTTAAAGCAACCCAAAATTCAGCAGGTTGAGCCTGATTTCAGTTTGAGATCCGACGGAGGAATGAGTTGTTCTATGTTGCCGAGGAGAGCTACGGTTACACGGGATAATTTGCAGCAGTTTAGAAACTTTCTAAGTCAGCCAGCGACACAGTCTTCAGTTGCGGGACCTTCGTGTGCCACAACTACATCGGTTCATTCAACTTCAGCTCCCATGATGAATTCAACAACCCGTTTGCATCTAGATAGTGGTTCGCACGTGGTTGCTGAACCTTTGGGAGAGATTGGTGTTTATCCTATAGCTGAAAGAGTTATGGAATCAGAAAATACAGATAATTCTGGTGAAAAAGACAATAAAATGTCAGTTGATAAGGCTGCAACTGTTGTGCAAGCTTCTGATTCTTGTGTCGGTGCCGAGTTGGCATCGAAAGAGAGTGATCAATCAAATAAGCACCAAGAATGCATGTTAAAAGAATCTGGCAATTCAAAACACGCTTCTTCTGATGGTGACAAGTTAACCGAAGGGAAAGAGCCTGCAGATGTTGCTCGCGTACAGCGTCTGGCTCCAGTGCCCAAAACACCATCTTTGGATGTGAAATCTGAATATTCTAAGTTAGAAAAACCAGAGAAGGCTGTGAGTAGTAAAGGTTCATCGGTCGCTAAGAAAAGGTCTTATGATCCTGATTTATTTTTCAAGGTTAATGGAAAGCTTTATCAACGTCTTGGCAAGATAGGTAGTGGTGGAAGCAGTGAGGTGCACAAGGTGATTTCATCAGATTGTAGGATATATGCACTTAAGAAGATCAAACTCAGGGGCCGTGATTATGCCACTGCTTTTGGGTTTTGTCAAGAGATCGAATATCTAAATAGGCTGAGAGGAAAGGATAATATTATACAGCTTATAGATTATGAGGTTACTGACAAGGCTTTGCTTGAACAAGTTATGAAAGGCTCTCTTAGTAATAAGGATGGCCGAGTCAAGGATGATGGATATATATACATGGTACTTGAATATGGCGAAATTGATTTAGCTCACATGTTGTCCCAGAAGTGGAAGGAGCTGGATGGATCCAACGAGACCATAGATGAGAACTGGCTTCGATTTTACTGGCAGCAAATTCTTCAAGCTGTCAATACTATTCACGAGGAACGTATTGTGCACTCTGACTTGAAGCCTGCTAACTTCCTCCTCGTCAAGGGTTCCCTAAAACTGATTGATTTTGGTATCGCCAAAGCAATAATGAGTGATACTACTAATATCCAACGAGAATCACAGGTTGGTACTCTGAGTTACATGTCTCCAGAAGCATTTATGTGTAATGAGACTGATGCGAACGGAAACATTATCAAGTGTGGTCGGCCGTCAGATATCTGGTCTTTGGGATGCATCCTTTATCAAATGGTATATGGGAGAACCCCCTTTTCAGAATACAAGACATTTTGGGCCAAATTTAAAGTTATAACAGATCCAAATCATGAAATTAAGTATGAACCACTTTCAAATCCATGGCTAGTAGATCTTATGAAGAGGTGTCTAGCATGGGATCGCAATCAAAGGTGGAGAATTCCTCAGTTACTCCAACATCCTTTTCTTGCACCTCATGTACTGCCTCATCCAACTTTGTCCCAAGACAGCAGCAGCTGTAAATTTGTACAACTTATTGCTGAAACTTGTACATATGACCCTGAAGCATCCAAACTTTGTCAGCAGCTCCAACGTCTTCTTGTTGACCCACTTGAGTTAACAACTCACTCACTAAACTCACGAGATCAACAAAGAACATTGTTGTCCCAAATGTCTGATCTCTGTATTCAGCTGCGGGAACGTTTGATAGATACTGATATCAAGTAA

Protein sequence

>Msa0370090

MDGKSNLPIKSDSSSSPPDFLRHVQAALKRHRPLGTGQSNIIRPRRTILRQPKHDSISNTNNDSLETSTVIAPSQDANVHSKVPQGANDEKAIELDNLSSYMSSLGFTEMEYIEGNQAEASIGLHDDLKQPKIQQVEPDFSLRSDGGMSCSMLPRRATVTRDNLQQFRNFLSQPATQSSVAGPSCATTTSVHSTSAPMMNSTTRLHLDSGSHVVAEPLGEIGVYPIAERVMESENTDNSGEKDNKMSVDKAATVVQASDSCVGAELASKESDQSNKHQECMLKESGNSKHASSDGDKLTEGKEPADVARVQRLAPVPKTPSLDVKSEYSKLEKPEKAVSSKGSSVAKKRSYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCRIYALKKIKLRGRDYATAFGFCQEIEYLNRLRGKDNIIQLIDYEVTDKALLEQVMKGSLSNKDGRVKDDGYIYMVLEYGEIDLAHMLSQKWKELDGSNETIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRESQVGTLSYMSPEAFMCNETDANGNIIKCGRPSDIWSLGCILYQMVYGRTPFSEYKTFWAKFKVITDPNHEIKYEPLSNPWLVDLMKRCLAWDRNQRWRIPQLLQHPFLAPHVLPHPTLSQDSSSCKFVQLIAETCTYDPEASKLCQQLQRLLVDPLELTTHSLNSRDQQRTLLSQMSDLCIQLRERLIDTDIK*