AlfalfaGEDB | Msa0372390

M. sativa cultivar zhongmu-4 / Msa0372390

KEGG: -
GO: -
PFAM: PF09425.13

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0372390	KEH35169.1	82.659	173	14	2	1	157	1	173	2.75e-94	280

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0372390	A0A072UZD5	82.659	173	14	2	1	157	1	173	1.31e-94	280

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TFs/TRs:

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Gene ID	Type	Classification
Msa0372390	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0372390	MtrunA17_Chr3g0120121	89.344	122	12	1	37	157	1	122	1.62e-74	218

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 25 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGACATAATGCATTGAGTG+TGG	0.644515	3_1:+70860104	Msa0372390:CDS
AATCTGTGGTGTCCATTGCG+AGG	0.627615	3_1:-70860747	None:intergenic
ACACCACAGATTTGACGAAA+AGG	0.545745	3_1:+70860758	Msa0372390:CDS
AGAAAGCAAAATTTCCATTT+AGG	0.111591	3_1:+70860135	Msa0372390:CDS
ATGCACTAGGTTGCATTGAA+AGG	0.491779	3_1:-70861201	None:intergenic
ATGGTTGGCAAGTCAAGAAA+TGG	0.426643	3_1:+70861135	Msa0372390:CDS
ATTTGACGAAAAGGAGCTTC+AGG	0.413840	3_1:+70860767	Msa0372390:CDS
CAAGAAATGGATGGAAAGAA+TGG	0.480394	3_1:+70861148	Msa0372390:CDS
CATGAGTTACAATAGAGAGG+TGG	0.687315	3_1:-70861309	None:intergenic
CTTGATGGAAAAGCCATGTG+AGG	0.674355	3_1:-70861236	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCATGAGACATATATTTCAA+GGG	-	chr3_1:70860380-70860399	None:intergenic	30.0%
TGCATGAGACATATATTTCA+AGG	-	chr3_1:70860381-70860400	None:intergenic	30.0%
GTATGAGAAATGCTACATAT+TGG	-	chr3_1:70860473-70860492	None:intergenic	30.0%
GCAAAGCTAGATTTCAAAAT+TGG	+	chr3_1:70860538-70860557	Msa0372390:CDS	30.0%
GATAGAATTTGAGTCGTTTA+TGG	+	chr3_1:70860650-70860669	Msa0372390:intron	30.0%
ATTATCGCATGCAAAAAGTT+AGG	-	chr3_1:70860880-70860899	None:intergenic	30.0%
GTGTATGGCAAAAAAAAACA+TGG	+	chr3_1:70860903-70860922	Msa0372390:intron	30.0%
TATCATGAGTTACAATAGAG+AGG	-	chr3_1:70861315-70861334	None:intergenic	30.0%
GCATGAGACATATATTTCAA+GGG	-	chr3_1:70860380-70860399	None:intergenic	30.0%
TGCATGAGACATATATTTCA+AGG	-	chr3_1:70860381-70860400	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	70860090	70861360	70860090	ID=Msa0372390;Name=Msa0372390
chr3_1	mRNA	70860090	70861360	70860090	ID=Msa0372390-mRNA-1;Parent=Msa0372390;Name=Msa0372390-mRNA-1;_AED=0.14;_eAED=0.15;_QI=0\|0\|0\|1\|0.66\|0.5\|4\|0\|157
chr3_1	exon	70860090	70860157	70860090	ID=Msa0372390-mRNA-1:exon:15487;Parent=Msa0372390-mRNA-1
chr3_1	exon	70860528	70860611	70860528	ID=Msa0372390-mRNA-1:exon:15488;Parent=Msa0372390-mRNA-1
chr3_1	exon	70860707	70860788	70860707	ID=Msa0372390-mRNA-1:exon:15489;Parent=Msa0372390-mRNA-1
chr3_1	exon	70861121	70861360	70861121	ID=Msa0372390-mRNA-1:exon:15490;Parent=Msa0372390-mRNA-1
chr3_1	CDS	70860090	70860157	70860090	ID=Msa0372390-mRNA-1:cds;Parent=Msa0372390-mRNA-1
chr3_1	CDS	70860528	70860611	70860528	ID=Msa0372390-mRNA-1:cds;Parent=Msa0372390-mRNA-1
chr3_1	CDS	70860707	70860788	70860707	ID=Msa0372390-mRNA-1:cds;Parent=Msa0372390-mRNA-1
chr3_1	CDS	70861121	70861360	70861121	ID=Msa0372390-mRNA-1:cds;Parent=Msa0372390-mRNA-1

Gene Sequence

>Msa0372390

ATGGAAACACCAAAAAGACATAATGCATTGAGTGTGGTTACACAAAGAAAGCAAAATTTCCATTTAGGAAGCTACATTGCAAAGCTAGATTTCAAAATTGGCATCACGATGAAACGAAATTGTTGTTTGGATTCATCATCTCGTAAATCAATGAAAGAGAAGTTGAACGTAAACAAGAAACTTGTTGCAAATCCTCGCAATGGACACCACAGATTTGACGAAAAGGAGCTTCAGGCTAGAGCTATAATATGGTTGGCAAGTCAAGAAATGGATGGAAAGAATGGTAGCAACAAAGAATCAACTCCAACACTATCCCTTTCAATGCAACCTAGTGCATTACAAATGCATGCCTCACATGGCTTTTCCATCAAGCGATCACTTCAAAATTTCCTTGAGAAGAGAAAGAATAGGATTCAAAGTTACCACCTCTCTATTGTAACTCATGATAATGATAATAATAGTAGTACAAATTAG

Protein sequence

>Msa0372390

METPKRHNALSVVTQRKQNFHLGSYIAKLDFKIGITMKRNCCLDSSSRKSMKEKLNVNKKLVANPRNGHHRFDEKELQARAIIWLASQEMDGKNGSNKESTPTLSLSMQPSALQMHASHGFSIKRSLQNFLEKRKNRIQSYHLSIVTHDNDNNSSTN*