Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0372780 | XP_013451538.1 | 82.547 | 212 | 18 | 3 | 1 | 193 | 1 | 212 | 2.11e-103 | 307 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0372780 | sp|Q9SRV3|LBD20_ARATH | 67.883 | 137 | 40 | 1 | 36 | 168 | 57 | 193 | 9.10e-56 | 180 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0372780 | A0A072U858 | 82.547 | 212 | 18 | 3 | 1 | 193 | 1 | 212 | 1.01e-103 | 307 |
Gene ID | Type | Classification |
---|---|---|
Msa0372780 | TF | LOB |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0372780 | MtrunA17_Chr6g0460951 | 82.547 | 212 | 18 | 3 | 1 | 193 | 1 | 212 | 1.94e-107 | 307 |
Msa0372780 | MtrunA17_Chr7g0260971 | 64.583 | 96 | 34 | 0 | 36 | 131 | 20 | 115 | 1.03e-39 | 134 |
Msa0372780 | MtrunA17_Chr1g0184271 | 57.143 | 112 | 46 | 1 | 36 | 147 | 18 | 127 | 3.68e-39 | 134 |
Msa0372780 | MtrunA17_Chr8g0351701 | 64.583 | 96 | 34 | 0 | 36 | 131 | 29 | 124 | 4.11e-39 | 133 |
Msa0372780 | MtrunA17_Chr7g0261031 | 64.211 | 95 | 34 | 0 | 36 | 130 | 14 | 108 | 1.36e-38 | 132 |
Msa0372780 | MtrunA17_Chr1g0184281 | 62.105 | 95 | 36 | 0 | 36 | 130 | 21 | 115 | 1.54e-38 | 131 |
Msa0372780 | MtrunA17_Chr5g0435641 | 50.893 | 112 | 55 | 0 | 36 | 147 | 13 | 124 | 2.06e-37 | 128 |
Msa0372780 | MtrunA17_Chr8g0351721 | 56.637 | 113 | 48 | 1 | 36 | 147 | 24 | 136 | 6.35e-37 | 127 |
Msa0372780 | MtrunA17_Chr7g0245871 | 58.333 | 96 | 40 | 0 | 36 | 131 | 33 | 128 | 2.86e-36 | 126 |
Msa0372780 | MtrunA17_Chr6g0460941 | 65.432 | 81 | 28 | 0 | 37 | 117 | 14 | 94 | 1.95e-34 | 117 |
Msa0372780 | MtrunA17_Chr4g0058651 | 51.961 | 102 | 48 | 1 | 36 | 137 | 17 | 117 | 3.64e-31 | 112 |
Msa0372780 | MtrunA17_Chr6g0449641 | 48.624 | 109 | 53 | 2 | 36 | 144 | 15 | 120 | 5.09e-30 | 107 |
Msa0372780 | MtrunA17_Chr3g0117121 | 51.456 | 103 | 47 | 2 | 36 | 138 | 16 | 115 | 1.30e-29 | 108 |
Msa0372780 | MtrunA17_Chr7g0227511 | 51.546 | 97 | 46 | 1 | 36 | 132 | 17 | 112 | 5.82e-29 | 105 |
Msa0372780 | MtrunA17_Chr4g0043421 | 38.621 | 145 | 79 | 3 | 36 | 174 | 21 | 161 | 1.39e-28 | 105 |
Msa0372780 | MtrunA17_Chr3g0114061 | 41.045 | 134 | 70 | 2 | 36 | 161 | 14 | 146 | 3.28e-28 | 103 |
Msa0372780 | MtrunA17_Chr5g0437401 | 48.958 | 96 | 48 | 1 | 36 | 131 | 17 | 111 | 1.18e-27 | 102 |
Msa0372780 | MtrunA17_Chr2g0311601 | 45.545 | 101 | 54 | 1 | 36 | 136 | 19 | 118 | 1.31e-27 | 102 |
Msa0372780 | MtrunA17_Chr3g0106101 | 48.454 | 97 | 49 | 1 | 36 | 132 | 13 | 108 | 1.37e-27 | 102 |
Msa0372780 | MtrunA17_Chr3g0129071 | 49.038 | 104 | 52 | 1 | 36 | 139 | 53 | 155 | 1.40e-27 | 103 |
Msa0372780 | MtrunA17_Chr7g0245861 | 60.714 | 84 | 31 | 2 | 36 | 117 | 18 | 101 | 2.62e-27 | 100 |
Msa0372780 | MtrunA17_Chr5g0438091 | 47.619 | 105 | 54 | 1 | 36 | 140 | 45 | 148 | 3.54e-27 | 102 |
Msa0372780 | MtrunA17_Chr6g0449651 | 45.872 | 109 | 56 | 2 | 36 | 144 | 73 | 178 | 5.83e-27 | 101 |
Msa0372780 | MtrunA17_Chr5g0402611 | 51.042 | 96 | 46 | 1 | 36 | 131 | 14 | 108 | 1.99e-26 | 102 |
Msa0372780 | MtrunA17_Chr5g0437571 | 43.750 | 112 | 60 | 2 | 36 | 147 | 12 | 120 | 4.77e-26 | 98.2 |
Msa0372780 | MtrunA17_Chr3g0115431 | 50.000 | 94 | 46 | 1 | 38 | 131 | 17 | 109 | 1.63e-25 | 98.2 |
Msa0372780 | MtrunA17_Chr4g0030001 | 36.364 | 154 | 89 | 4 | 36 | 182 | 30 | 181 | 6.80e-25 | 95.9 |
Msa0372780 | MtrunA17_Chr3g0113891 | 46.154 | 91 | 48 | 1 | 36 | 126 | 20 | 109 | 8.48e-25 | 95.5 |
Msa0372780 | MtrunA17_Chr3g0097221 | 43.636 | 110 | 58 | 2 | 36 | 145 | 13 | 118 | 9.08e-24 | 95.1 |
Msa0372780 | MtrunA17_Chr5g0444351 | 43.434 | 99 | 55 | 1 | 38 | 136 | 13 | 110 | 2.68e-23 | 90.5 |
Msa0372780 | MtrunA17_Chr1g0200201 | 41.818 | 110 | 61 | 2 | 36 | 144 | 78 | 185 | 1.07e-22 | 91.3 |
Msa0372780 | MtrunA17_Chr7g0225111 | 40.404 | 99 | 58 | 1 | 38 | 136 | 13 | 110 | 1.57e-22 | 87.8 |
Msa0372780 | MtrunA17_Chr5g0432451 | 51.000 | 100 | 48 | 1 | 36 | 135 | 49 | 147 | 5.61e-22 | 89.4 |
Msa0372780 | MtrunA17_Chr8g0353981 | 54.667 | 75 | 33 | 1 | 36 | 110 | 13 | 86 | 1.28e-21 | 88.2 |
Msa0372780 | MtrunA17_Chr8g0374601 | 39.252 | 107 | 64 | 1 | 25 | 131 | 21 | 126 | 1.25e-18 | 81.3 |
Msa0372780 | MtrunA17_Chr4g0059901 | 38.542 | 96 | 58 | 1 | 36 | 131 | 16 | 110 | 2.31e-15 | 72.0 |
Msa0372780 | MtrunA17_Chr8g0374591 | 33.645 | 107 | 70 | 1 | 25 | 131 | 3 | 108 | 2.52e-15 | 69.3 |
Msa0372780 | MtrunA17_Chr8g0342351 | 35.417 | 96 | 61 | 1 | 36 | 131 | 18 | 112 | 6.61e-14 | 68.2 |
Msa0372780 | MtrunA17_Chr2g0330201 | 34.375 | 96 | 62 | 1 | 36 | 131 | 25 | 119 | 1.03e-13 | 68.2 |
Msa0372780 | MtrunA17_Chr6g0452671 | 34.375 | 96 | 62 | 1 | 36 | 131 | 17 | 111 | 5.52e-13 | 64.7 |
Msa0372780 | MtrunA17_Chr8g0374581 | 33.051 | 118 | 73 | 3 | 38 | 154 | 16 | 128 | 6.15e-13 | 65.1 |
Msa0372780 | MtrunA17_Chr6g0452691 | 42.105 | 76 | 42 | 2 | 36 | 110 | 15 | 89 | 7.13e-13 | 63.9 |
Msa0372780 | MtrunA17_Chr4g0040831 | 33.673 | 98 | 61 | 2 | 38 | 132 | 23 | 119 | 1.15e-12 | 63.9 |
Msa0372780 | MtrunA17_Chr2g0326051 | 35.714 | 98 | 52 | 3 | 76 | 162 | 5 | 102 | 5.69e-11 | 57.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0372780 | AT3G03760.1 | 67.883 | 137 | 40 | 1 | 36 | 168 | 57 | 193 | 9.25e-57 | 180 |
Msa0372780 | AT2G42430.1 | 51.724 | 145 | 51 | 2 | 36 | 161 | 21 | 165 | 3.45e-41 | 139 |
Msa0372780 | AT3G58190.1 | 58.036 | 112 | 46 | 1 | 36 | 147 | 17 | 127 | 5.28e-40 | 135 |
Msa0372780 | AT4G00220.1 | 61.386 | 101 | 39 | 0 | 36 | 136 | 23 | 123 | 2.58e-39 | 134 |
Msa0372780 | AT2G45420.1 | 62.376 | 101 | 38 | 0 | 36 | 136 | 43 | 143 | 2.77e-39 | 135 |
Msa0372780 | AT5G06080.1 | 45.985 | 137 | 65 | 1 | 36 | 172 | 13 | 140 | 2.69e-37 | 127 |
Msa0372780 | AT2G31310.1 | 55.789 | 95 | 42 | 0 | 36 | 130 | 13 | 107 | 3.01e-35 | 122 |
Msa0372780 | AT2G42440.1 | 49.194 | 124 | 60 | 1 | 36 | 159 | 13 | 133 | 3.21e-35 | 124 |
Msa0372780 | AT2G45410.1 | 47.445 | 137 | 63 | 3 | 36 | 170 | 22 | 151 | 2.96e-34 | 120 |
Msa0372780 | AT4G00210.1 | 58.333 | 96 | 40 | 0 | 36 | 131 | 17 | 112 | 7.45e-34 | 120 |
Msa0372780 | AT3G27650.1 | 52.577 | 97 | 45 | 1 | 36 | 132 | 45 | 140 | 1.10e-29 | 107 |
Msa0372780 | AT5G63090.4 | 50.000 | 102 | 50 | 1 | 36 | 137 | 17 | 117 | 4.65e-29 | 107 |
Msa0372780 | AT5G63090.3 | 50.000 | 102 | 50 | 1 | 36 | 137 | 17 | 117 | 4.65e-29 | 107 |
Msa0372780 | AT5G63090.2 | 50.000 | 102 | 50 | 1 | 36 | 137 | 17 | 117 | 4.65e-29 | 107 |
Msa0372780 | AT5G63090.1 | 50.000 | 102 | 50 | 1 | 36 | 137 | 17 | 117 | 4.65e-29 | 107 |
Msa0372780 | AT2G30130.1 | 45.614 | 114 | 59 | 2 | 36 | 149 | 14 | 124 | 4.89e-27 | 102 |
Msa0372780 | AT1G16530.1 | 47.525 | 101 | 51 | 2 | 36 | 135 | 20 | 119 | 7.24e-27 | 100 |
Msa0372780 | AT5G66870.1 | 42.222 | 135 | 73 | 2 | 36 | 170 | 13 | 142 | 1.53e-26 | 103 |
Msa0372780 | AT2G30340.1 | 45.872 | 109 | 56 | 2 | 36 | 144 | 58 | 163 | 1.71e-26 | 102 |
Msa0372780 | AT2G30340.2 | 45.872 | 109 | 56 | 2 | 36 | 144 | 59 | 164 | 1.85e-26 | 102 |
Msa0372780 | AT3G11090.1 | 45.361 | 97 | 52 | 1 | 36 | 132 | 17 | 112 | 1.09e-25 | 97.8 |
Msa0372780 | AT1G07900.1 | 41.818 | 110 | 61 | 2 | 36 | 144 | 39 | 146 | 3.20e-24 | 94.4 |
Msa0372780 | AT1G31320.1 | 45.545 | 101 | 54 | 1 | 36 | 136 | 19 | 118 | 1.24e-23 | 92.4 |
Msa0372780 | AT2G28500.1 | 44.118 | 102 | 54 | 2 | 36 | 136 | 61 | 160 | 3.58e-23 | 92.8 |
Msa0372780 | AT3G26660.1 | 41.748 | 103 | 52 | 2 | 36 | 131 | 11 | 112 | 6.37e-23 | 89.4 |
Msa0372780 | AT1G65620.1 | 51.042 | 96 | 46 | 1 | 36 | 131 | 15 | 109 | 7.96e-23 | 91.3 |
Msa0372780 | AT1G65620.4 | 51.042 | 96 | 46 | 1 | 36 | 131 | 15 | 109 | 7.96e-23 | 91.3 |
Msa0372780 | AT1G65620.3 | 51.042 | 96 | 46 | 1 | 36 | 131 | 15 | 109 | 7.96e-23 | 91.3 |
Msa0372780 | AT1G65620.5 | 51.042 | 96 | 46 | 1 | 36 | 131 | 15 | 109 | 7.96e-23 | 91.3 |
Msa0372780 | AT1G65620.2 | 51.042 | 96 | 46 | 1 | 36 | 131 | 15 | 109 | 7.96e-23 | 91.3 |
Msa0372780 | AT3G26620.1 | 41.748 | 103 | 52 | 2 | 36 | 131 | 11 | 112 | 9.08e-23 | 89.0 |
Msa0372780 | AT2G23660.2 | 42.268 | 97 | 55 | 1 | 36 | 132 | 11 | 106 | 9.02e-22 | 90.5 |
Msa0372780 | AT2G23660.3 | 42.268 | 97 | 55 | 1 | 36 | 132 | 11 | 106 | 9.02e-22 | 90.5 |
Msa0372780 | AT2G23660.1 | 42.268 | 97 | 55 | 1 | 36 | 132 | 11 | 106 | 9.02e-22 | 90.5 |
Msa0372780 | AT2G40470.2 | 49.107 | 112 | 55 | 2 | 36 | 147 | 26 | 135 | 1.48e-20 | 85.1 |
Msa0372780 | AT2G40470.1 | 49.107 | 112 | 55 | 2 | 36 | 147 | 51 | 160 | 1.92e-20 | 85.5 |
Msa0372780 | AT3G50510.1 | 36.842 | 95 | 59 | 1 | 37 | 131 | 19 | 112 | 5.01e-17 | 75.9 |
Msa0372780 | AT3G50510.2 | 36.842 | 95 | 59 | 1 | 37 | 131 | 19 | 112 | 5.01e-17 | 75.9 |
Msa0372780 | AT3G13850.1 | 30.128 | 156 | 103 | 2 | 36 | 191 | 42 | 191 | 5.91e-15 | 71.6 |
Msa0372780 | AT1G72980.1 | 37.234 | 94 | 58 | 1 | 38 | 131 | 21 | 113 | 9.28e-15 | 70.1 |
Msa0372780 | AT5G35900.1 | 30.526 | 95 | 65 | 1 | 37 | 131 | 12 | 105 | 3.84e-11 | 60.1 |
Find 51 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATTGAAACGGCGGCTGATA+TGG | 0.240934 | 3_1:-71487613 | None:intergenic |
AGGCTAGCTGATCCGGTTTA+TGG | 0.264632 | 3_1:+71487353 | Msa0372780:CDS |
AACAACTTCAACCCTGGTTT+TGG | 0.268597 | 3_1:+71487694 | Msa0372780:CDS |
CATTCTTGCTTTGCAGCAAC+AGG | 0.339538 | 3_1:+71487388 | Msa0372780:CDS |
GGTGATGATGGTAGTAGTTC+GGG | 0.392136 | 3_1:+71487050 | Msa0372780:CDS |
TGCATCTTTGCACCCTACTT+TGG | 0.399115 | 3_1:+71487194 | Msa0372780:CDS |
TGAAGTTGTTCATGTTCATA+AGG | 0.399289 | 3_1:-71487681 | None:intergenic |
TGCAGCTAAGTTTGCGGCTG+TGG | 0.405631 | 3_1:+71487229 | Msa0372780:CDS |
TAGCCTAGCTTGAGCCTCAT+AGG | 0.409914 | 3_1:-71487336 | None:intergenic |
ATGGTAGTAGTTCGGGAAAC+AGG | 0.414773 | 3_1:+71487057 | Msa0372780:CDS |
ATTGAAACGGCGGCTGATAT+GGG | 0.422968 | 3_1:-71487612 | None:intergenic |
AAATAGTCGCCGCAGCTTCA+TGG | 0.427210 | 3_1:-71487313 | None:intergenic |
GCGGCTGTGGACAAGGTGTT+TGG | 0.427455 | 3_1:+71487242 | Msa0372780:CDS |
AAACTCAATTGATGAATAAG+AGG | 0.436075 | 3_1:+71487557 | Msa0372780:CDS |
AGGTGATGATGGTAGTAGTT+CGG | 0.439949 | 3_1:+71487049 | Msa0372780:CDS |
TCAAGCTAGGCTAGCTGATC+CGG | 0.442761 | 3_1:+71487346 | Msa0372780:CDS |
TTCTACAAGCTCTGTGATGA+AGG | 0.469796 | 3_1:-71487736 | None:intergenic |
GTTGTTCATGTTCATAAGGT+TGG | 0.485083 | 3_1:-71487677 | None:intergenic |
TTGAGGAGGAAGTGTAGTAG+TGG | 0.488789 | 3_1:+71487170 | Msa0372780:CDS |
GTGGACACACAACCATAAAC+CGG | 0.504022 | 3_1:-71487365 | None:intergenic |
AAGAGCAACACAAGATGAAC+CGG | 0.506885 | 3_1:+71487118 | Msa0372780:CDS |
TCCATTGTGAGGCCAAAACC+AGG | 0.513069 | 3_1:-71487706 | None:intergenic |
GGTGGAAGCAGATGAGTTGT+TGG | 0.513070 | 3_1:-71487653 | None:intergenic |
AACATGAACAACTTCAACCC+TGG | 0.523993 | 3_1:+71487688 | Msa0372780:CDS |
CTGTTGCTGCAAAGCAAGAA+TGG | 0.532688 | 3_1:-71487387 | None:intergenic |
AAATGCTGCAAAGCGTGCAA+TGG | 0.533586 | 3_1:+71487094 | Msa0372780:CDS |
CCAAGGTGCAGCTAAGTTTG+CGG | 0.534415 | 3_1:+71487223 | Msa0372780:CDS |
GTTCATGTTCATAAGGTTGG+TGG | 0.542354 | 3_1:-71487674 | None:intergenic |
TAAGTTTGCGGCTGTGGACA+AGG | 0.553907 | 3_1:+71487235 | Msa0372780:CDS |
ACCTTGGTCAGTACCAAAGT+AGG | 0.564783 | 3_1:-71487207 | None:intergenic |
GCTGAGTCACAAGGTGATGA+TGG | 0.566887 | 3_1:+71487038 | Msa0372780:CDS |
TCGCCGCAGCTTCATGGCGA+TGG | 0.568449 | 3_1:-71487307 | None:intergenic |
GCTGGCTGCACAAATTGAAA+CGG | 0.572987 | 3_1:-71487625 | None:intergenic |
CATGTTCATAAGGTTGGTGG+TGG | 0.580499 | 3_1:-71487671 | None:intergenic |
TTTCCTATGAGGCTCAAGCT+AGG | 0.592261 | 3_1:+71487333 | Msa0372780:CDS |
CCTTGGTCAGTACCAAAGTA+GGG | 0.597516 | 3_1:-71487206 | None:intergenic |
TGCGGCGACTATTTCCTATG+AGG | 0.598387 | 3_1:+71487322 | Msa0372780:CDS |
CCGCAAACTTAGCTGCACCT+TGG | 0.601831 | 3_1:-71487223 | None:intergenic |
TTGAAACGGCGGCTGATATG+GGG | 0.604833 | 3_1:-71487611 | None:intergenic |
GATGAGTTGTTGGAATATGC+TGG | 0.605347 | 3_1:-71487643 | None:intergenic |
CCCTACTTTGGTACTGACCA+AGG | 0.613176 | 3_1:+71487206 | Msa0372780:CDS |
TAACCATCGCCATGAAGCTG+CGG | 0.616919 | 3_1:+71487304 | Msa0372780:CDS |
GGCTGCACAAATTGAAACGG+CGG | 0.671846 | 3_1:-71487622 | None:intergenic |
GGTGGCAGCTATGCAAGCAG+AGG | 0.672106 | 3_1:+71487522 | Msa0372780:intron |
GCGATGGTTAGCGAGAACGT+TGG | 0.688497 | 3_1:-71487291 | None:intergenic |
GTGGTGCTTGAAAGTTCTTG+AGG | 0.691506 | 3_1:+71487153 | Msa0372780:intron |
CCATTGTGAGGCCAAAACCA+GGG | 0.697828 | 3_1:-71487705 | None:intergenic |
GTGCTTGAAAGTTCTTGAGG+AGG | 0.698771 | 3_1:+71487156 | Msa0372780:intron |
AAGGTGTTGTCTCCATTGTG+AGG | 0.699953 | 3_1:-71487717 | None:intergenic |
TTGCTGCAAAGCAAGAATGG+TGG | 0.702855 | 3_1:-71487384 | None:intergenic |
TCTGTGATGGCTGAGTCACA+AGG | 0.715606 | 3_1:+71487029 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTCTGCAAATGATTTATTAA+AGG | - | chr3_1:71487461-71487480 | None:intergenic | 20.0% |
!!! | AATCATTTGCAGAATATTTT+CGG | + | chr3_1:71487467-71487486 | Msa0372780:intron | 20.0% |
! | AAACTCAATTGATGAATAAG+AGG | + | chr3_1:71487557-71487576 | Msa0372780:CDS | 25.0% |
! | AAGATGAATAACTTGCCTTA+TGG | + | chr3_1:71487491-71487510 | Msa0372780:intron | 30.0% |
TGAAGTTGTTCATGTTCATA+AGG | - | chr3_1:71487684-71487703 | None:intergenic | 30.0% | |
GTTGTTCATGTTCATAAGGT+TGG | - | chr3_1:71487680-71487699 | None:intergenic | 35.0% | |
!! | AGGTGATGATGGTAGTAGTT+CGG | + | chr3_1:71487049-71487068 | Msa0372780:CDS | 40.0% |
AAGAGCAACACAAGATGAAC+CGG | + | chr3_1:71487118-71487137 | Msa0372780:CDS | 40.0% | |
AAGAACTTTCAAGCACCACA+CGG | - | chr3_1:71487152-71487171 | None:intergenic | 40.0% | |
GATGAGTTGTTGGAATATGC+TGG | - | chr3_1:71487646-71487665 | None:intergenic | 40.0% | |
GTTCATGTTCATAAGGTTGG+TGG | - | chr3_1:71487677-71487696 | None:intergenic | 40.0% | |
AACATGAACAACTTCAACCC+TGG | + | chr3_1:71487688-71487707 | Msa0372780:CDS | 40.0% | |
! | AACAACTTCAACCCTGGTTT+TGG | + | chr3_1:71487694-71487713 | Msa0372780:CDS | 40.0% |
!! | GGTGATGATGGTAGTAGTTC+GGG | + | chr3_1:71487050-71487069 | Msa0372780:CDS | 45.0% |
ATGGTAGTAGTTCGGGAAAC+AGG | + | chr3_1:71487057-71487076 | Msa0372780:CDS | 45.0% | |
AAATGCTGCAAAGCGTGCAA+TGG | + | chr3_1:71487094-71487113 | Msa0372780:CDS | 45.0% | |
GTGGTGCTTGAAAGTTCTTG+AGG | + | chr3_1:71487153-71487172 | Msa0372780:intron | 45.0% | |
GTGCTTGAAAGTTCTTGAGG+AGG | + | chr3_1:71487156-71487175 | Msa0372780:intron | 45.0% | |
! | TTGAGGAGGAAGTGTAGTAG+TGG | + | chr3_1:71487170-71487189 | Msa0372780:CDS | 45.0% |
TGCATCTTTGCACCCTACTT+TGG | + | chr3_1:71487194-71487213 | Msa0372780:CDS | 45.0% | |
CCTTGGTCAGTACCAAAGTA+GGG | - | chr3_1:71487209-71487228 | None:intergenic | 45.0% | |
ACCTTGGTCAGTACCAAAGT+AGG | - | chr3_1:71487210-71487229 | None:intergenic | 45.0% | |
TTTCCTATGAGGCTCAAGCT+AGG | + | chr3_1:71487333-71487352 | Msa0372780:CDS | 45.0% | |
GTGGACACACAACCATAAAC+CGG | - | chr3_1:71487368-71487387 | None:intergenic | 45.0% | |
TTGCTGCAAAGCAAGAATGG+TGG | - | chr3_1:71487387-71487406 | None:intergenic | 45.0% | |
CTGTTGCTGCAAAGCAAGAA+TGG | - | chr3_1:71487390-71487409 | None:intergenic | 45.0% | |
CATTCTTGCTTTGCAGCAAC+AGG | + | chr3_1:71487388-71487407 | Msa0372780:CDS | 45.0% | |
! | ACTTGCCTTATGGCTGATTC+AGG | + | chr3_1:71487501-71487520 | Msa0372780:intron | 45.0% |
ATTGAAACGGCGGCTGATAT+GGG | - | chr3_1:71487615-71487634 | None:intergenic | 45.0% | |
AATTGAAACGGCGGCTGATA+TGG | - | chr3_1:71487616-71487635 | None:intergenic | 45.0% | |
GCTGGCTGCACAAATTGAAA+CGG | - | chr3_1:71487628-71487647 | None:intergenic | 45.0% | |
!! | CATGTTCATAAGGTTGGTGG+TGG | - | chr3_1:71487674-71487693 | None:intergenic | 45.0% |
!! | AAGGTGTTGTCTCCATTGTG+AGG | - | chr3_1:71487720-71487739 | None:intergenic | 45.0% |
GCTGAGTCACAAGGTGATGA+TGG | + | chr3_1:71487038-71487057 | Msa0372780:CDS | 50.0% | |
GAACCGGTTATATCACCGTG+TGG | + | chr3_1:71487134-71487153 | Msa0372780:intron | 50.0% | |
GCACCACACGGTGATATAAC+CGG | - | chr3_1:71487140-71487159 | None:intergenic | 50.0% | |
!! | CCCTACTTTGGTACTGACCA+AGG | + | chr3_1:71487206-71487225 | Msa0372780:CDS | 50.0% |
CCAAGGTGCAGCTAAGTTTG+CGG | + | chr3_1:71487223-71487242 | Msa0372780:CDS | 50.0% | |
TAAGTTTGCGGCTGTGGACA+AGG | + | chr3_1:71487235-71487254 | Msa0372780:CDS | 50.0% | |
TAACCATCGCCATGAAGCTG+CGG | + | chr3_1:71487304-71487323 | Msa0372780:CDS | 50.0% | |
AAATAGTCGCCGCAGCTTCA+TGG | - | chr3_1:71487316-71487335 | None:intergenic | 50.0% | |
TGCGGCGACTATTTCCTATG+AGG | + | chr3_1:71487322-71487341 | Msa0372780:CDS | 50.0% | |
TAGCCTAGCTTGAGCCTCAT+AGG | - | chr3_1:71487339-71487358 | None:intergenic | 50.0% | |
! | TCAAGCTAGGCTAGCTGATC+CGG | + | chr3_1:71487346-71487365 | Msa0372780:CDS | 50.0% |
! | AGGCTAGCTGATCCGGTTTA+TGG | + | chr3_1:71487353-71487372 | Msa0372780:CDS | 50.0% |
TCTTGCTTTGCAGCAACAGG+TGG | + | chr3_1:71487391-71487410 | Msa0372780:intron | 50.0% | |
! | TGCCTTATGGCTGATTCAGG+TGG | + | chr3_1:71487504-71487523 | Msa0372780:intron | 50.0% |
TGCCACCTGAATCAGCCATA+AGG | - | chr3_1:71487509-71487528 | None:intergenic | 50.0% | |
TTGAAACGGCGGCTGATATG+GGG | - | chr3_1:71487614-71487633 | None:intergenic | 50.0% | |
GGCTGCACAAATTGAAACGG+CGG | - | chr3_1:71487625-71487644 | None:intergenic | 50.0% | |
GGTGGAAGCAGATGAGTTGT+TGG | - | chr3_1:71487656-71487675 | None:intergenic | 50.0% | |
CCATTGTGAGGCCAAAACCA+GGG | - | chr3_1:71487708-71487727 | None:intergenic | 50.0% | |
TCCATTGTGAGGCCAAAACC+AGG | - | chr3_1:71487709-71487728 | None:intergenic | 50.0% | |
CCGCAAACTTAGCTGCACCT+TGG | - | chr3_1:71487226-71487245 | None:intergenic | 55.0% | |
TGCAGCTAAGTTTGCGGCTG+TGG | + | chr3_1:71487229-71487248 | Msa0372780:CDS | 55.0% | |
GCGATGGTTAGCGAGAACGT+TGG | - | chr3_1:71487294-71487313 | None:intergenic | 55.0% | |
!!! | CCCTGGTTTTGGCCTCACAA+TGG | + | chr3_1:71487705-71487724 | Msa0372780:CDS | 55.0% |
! | GCGGCTGTGGACAAGGTGTT+TGG | + | chr3_1:71487242-71487261 | Msa0372780:CDS | 60.0% |
GGTGGCAGCTATGCAAGCAG+AGG | + | chr3_1:71487522-71487541 | Msa0372780:intron | 60.0% | |
TCGCCGCAGCTTCATGGCGA+TGG | - | chr3_1:71487310-71487329 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 71487035 | 71487756 | 71487035 | ID=Msa0372780;Name=Msa0372780 |
chr3_1 | mRNA | 71487035 | 71487756 | 71487035 | ID=Msa0372780-mRNA-1;Parent=Msa0372780;Name=Msa0372780-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|3|0|193 |
chr3_1 | exon | 71487035 | 71487139 | 71487035 | ID=Msa0372780-mRNA-1:exon:15750;Parent=Msa0372780-mRNA-1 |
chr3_1 | exon | 71487167 | 71487409 | 71487167 | ID=Msa0372780-mRNA-1:exon:15751;Parent=Msa0372780-mRNA-1 |
chr3_1 | exon | 71487523 | 71487756 | 71487523 | ID=Msa0372780-mRNA-1:exon:15752;Parent=Msa0372780-mRNA-1 |
chr3_1 | CDS | 71487035 | 71487139 | 71487035 | ID=Msa0372780-mRNA-1:cds;Parent=Msa0372780-mRNA-1 |
chr3_1 | CDS | 71487167 | 71487409 | 71487167 | ID=Msa0372780-mRNA-1:cds;Parent=Msa0372780-mRNA-1 |
chr3_1 | CDS | 71487523 | 71487756 | 71487523 | ID=Msa0372780-mRNA-1:cds;Parent=Msa0372780-mRNA-1 |
Gene Sequence |
Protein sequence |