Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0372790 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 30 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCGCAAAGAAGCAATTTA+TGG | 0.189802 | 3_1:+71491620 | Msa0372790:CDS |
| CGCAAAAGCTAGCTGCATTT+TGG | 0.214939 | 3_1:-71491551 | None:intergenic |
| GCGGCCGTGCACAAGGTCTT+TGG | 0.252398 | 3_1:+71491571 | Msa0372790:CDS |
| CACCAGGATACTCTTGCTTC+TGG | 0.301673 | 3_1:-71490543 | None:intergenic |
| TTGAAGAGGAAGTGTATTAA+TGG | 0.327862 | 3_1:+71491498 | Msa0372790:CDS |
| CTCAGTCTTTGCTTCTCTTA+CGG | 0.354185 | 3_1:-71490032 | None:intergenic |
| CATTCGTGCTTTGGAGAAAC+AGG | 0.369592 | 3_1:+71491655 | Msa0372790:CDS |
| TGTGTCCACCATTCGTGCTT+TGG | 0.394775 | 3_1:+71491646 | Msa0372790:CDS |
| TGCATCTTTGCACCCTACTT+TGG | 0.399115 | 3_1:+71491522 | Msa0372790:CDS |
| AACCATAAATTGCTTCTTTG+CGG | 0.404189 | 3_1:-71491622 | None:intergenic |
| ACTTGGAAAGGTTGTCTTTG+TGG | 0.410844 | 3_1:-71490070 | None:intergenic |
| GCTTCTCTTACGGCGTAGAT+TGG | 0.433591 | 3_1:-71490022 | None:intergenic |
| GCCGTTGTATGCTATTAACT+TGG | 0.448901 | 3_1:+71490597 | Msa0372790:CDS |
| CTCTTCAAGTGCTTGCAAGC+AGG | 0.450520 | 3_1:-71491483 | None:intergenic |
| GCTTCTTTGCGGTGGTTAGT+TGG | 0.473263 | 3_1:-71491611 | None:intergenic |
| CAGATATATCGGTGCTGTGT+GGG | 0.478200 | 3_1:+71491459 | Msa0372790:intron |
| ATTCTCTGTGGCAGATATAT+CGG | 0.488685 | 3_1:+71491448 | Msa0372790:intron |
| GCGGTGGTTAGTTGGAATAG+TGG | 0.521356 | 3_1:-71491603 | None:intergenic |
| ATCCAGAAGCAAGAGTATCC+TGG | 0.550051 | 3_1:+71490541 | Msa0372790:CDS |
| CTGTTTCTCCAAAGCACGAA+TGG | 0.553798 | 3_1:-71491654 | None:intergenic |
| CCGTTGTATGCTATTAACTT+GGG | 0.559161 | 3_1:+71490598 | Msa0372790:CDS |
| CATAAATTGCTTCTTTGCGG+TGG | 0.564619 | 3_1:-71491619 | None:intergenic |
| TGTGTGAAACTTACTTGGAA+AGG | 0.566813 | 3_1:-71490082 | None:intergenic |
| CTGCTTGCAAGCACTTGAAG+AGG | 0.588240 | 3_1:+71491484 | Msa0372790:CDS |
| TTTCTCCAAAGCACGAATGG+TGG | 0.607637 | 3_1:-71491651 | None:intergenic |
| ATGATAAAATCTAAATCACC+AGG | 0.610570 | 3_1:-71490559 | None:intergenic |
| AGCTCCAAAGACCTTGTGCA+CGG | 0.616797 | 3_1:-71491575 | None:intergenic |
| GCAGATATATCGGTGCTGTG+TGG | 0.624107 | 3_1:+71491458 | Msa0372790:intron |
| AGATATATCGGTGCTGTGTG+GGG | 0.631275 | 3_1:+71491460 | Msa0372790:intron |
| CCCAAGTTAATAGCATACAA+CGG | 0.708452 | 3_1:-71490598 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATATTGATAATCTATT+TGG | + | chr3_1:71491167-71491186 | Msa0372790:intron | 10.0% |
| !!! | TTTTATTTTTTCTTTATGTT+TGG | + | chr3_1:71491366-71491385 | Msa0372790:intron | 10.0% |
| !!! | AATAATATTGATAATCTATT+TGG | + | chr3_1:71491167-71491186 | Msa0372790:intron | 10.0% |
| !!! | TTTTATTTTTTCTTTATGTT+TGG | + | chr3_1:71491366-71491385 | Msa0372790:intron | 10.0% |
| !!! | TTAGATTTTATCATATTTGT+AGG | + | chr3_1:71490568-71490587 | Msa0372790:CDS | 15.0% |
| !! | TAGCCAAAAAATAATTTAAT+GGG | - | chr3_1:71491107-71491126 | None:intergenic | 15.0% |
| !! | AAGAAAATAAAATCTAACAA+TGG | - | chr3_1:71491258-71491277 | None:intergenic | 15.0% |
| !!! | TTAGATTTTATCATATTTGT+AGG | + | chr3_1:71490568-71490587 | Msa0372790:CDS | 15.0% |
| !! | TAGCCAAAAAATAATTTAAT+GGG | - | chr3_1:71491107-71491126 | None:intergenic | 15.0% |
| !! | AAGAAAATAAAATCTAACAA+TGG | - | chr3_1:71491258-71491277 | None:intergenic | 15.0% |
| !!! | CATTTATTAATGTTTTAGTG+TGG | + | chr3_1:71490968-71490987 | Msa0372790:intron | 20.0% |
| !!! | AAGTTTTTTTTTTCCTTTTG+GGG | - | chr3_1:71491053-71491072 | None:intergenic | 20.0% |
| !!! | CAAGTTTTTTTTTTCCTTTT+GGG | - | chr3_1:71491054-71491073 | None:intergenic | 20.0% |
| !!! | TCAAGTTTTTTTTTTCCTTT+TGG | - | chr3_1:71491055-71491074 | None:intergenic | 20.0% |
| !!! | TACCCCATTAAATTATTTTT+TGG | + | chr3_1:71491101-71491120 | Msa0372790:intron | 20.0% |
| !! | AGCCAAAAAATAATTTAATG+GGG | - | chr3_1:71491106-71491125 | None:intergenic | 20.0% |
| !! | GTAGCCAAAAAATAATTTAA+TGG | - | chr3_1:71491108-71491127 | None:intergenic | 20.0% |
| !! | TTTGAACTAACAAAATTGTT+TGG | - | chr3_1:71491132-71491151 | None:intergenic | 20.0% |
| !!! | CATTTATTAATGTTTTAGTG+TGG | + | chr3_1:71490968-71490987 | Msa0372790:intron | 20.0% |
| !!! | AAGTTTTTTTTTTCCTTTTG+GGG | - | chr3_1:71491053-71491072 | None:intergenic | 20.0% |
| !!! | CAAGTTTTTTTTTTCCTTTT+GGG | - | chr3_1:71491054-71491073 | None:intergenic | 20.0% |
| !!! | TCAAGTTTTTTTTTTCCTTT+TGG | - | chr3_1:71491055-71491074 | None:intergenic | 20.0% |
| !!! | TACCCCATTAAATTATTTTT+TGG | + | chr3_1:71491101-71491120 | Msa0372790:intron | 20.0% |
| !! | AGCCAAAAAATAATTTAATG+GGG | - | chr3_1:71491106-71491125 | None:intergenic | 20.0% |
| !! | GTAGCCAAAAAATAATTTAA+TGG | - | chr3_1:71491108-71491127 | None:intergenic | 20.0% |
| !! | TTTGAACTAACAAAATTGTT+TGG | - | chr3_1:71491132-71491151 | None:intergenic | 20.0% |
| ! | GAATAAAATATTGACAGGAT+GGG | - | chr3_1:71490120-71490139 | None:intergenic | 25.0% |
| ! | TGAATAAAATATTGACAGGA+TGG | - | chr3_1:71490121-71490140 | None:intergenic | 25.0% |
| !! | GGTCTTAAAGTATTAGTTAT+TGG | - | chr3_1:71490162-71490181 | None:intergenic | 25.0% |
| ! | TTCTCTCACTAAAAAAACTA+GGG | - | chr3_1:71490200-71490219 | None:intergenic | 25.0% |
| ! | TTTCTCTCACTAAAAAAACT+AGG | - | chr3_1:71490201-71490220 | None:intergenic | 25.0% |
| ! | TTATTTAGATCGAAAGAAAG+TGG | - | chr3_1:71490322-71490341 | None:intergenic | 25.0% |
| ! | CACAGATTTAATCAATGATT+TGG | + | chr3_1:71490503-71490522 | Msa0372790:intron | 25.0% |
| ! | ATGATAAAATCTAAATCACC+AGG | - | chr3_1:71490562-71490581 | None:intergenic | 25.0% |
| !! | TTATATGTGATGATTTGTGA+GGG | - | chr3_1:71490889-71490908 | None:intergenic | 25.0% |
| !! | TTTATATGTGATGATTTGTG+AGG | - | chr3_1:71490890-71490909 | None:intergenic | 25.0% |
| ! | TCGCAATTTATAACATTGTT+GGG | - | chr3_1:71490919-71490938 | None:intergenic | 25.0% |
| ! | ATCGCAATTTATAACATTGT+TGG | - | chr3_1:71490920-71490939 | None:intergenic | 25.0% |
| !! | ATTTGGTTTAGTGTCTATTA+TGG | + | chr3_1:71491184-71491203 | Msa0372790:intron | 25.0% |
| !!! | TTTATTCAAGTTGAGTTGTA+TGG | - | chr3_1:71491232-71491251 | None:intergenic | 25.0% |
| ! | GAATAAAATATTGACAGGAT+GGG | - | chr3_1:71490120-71490139 | None:intergenic | 25.0% |
| ! | TGAATAAAATATTGACAGGA+TGG | - | chr3_1:71490121-71490140 | None:intergenic | 25.0% |
| !! | GGTCTTAAAGTATTAGTTAT+TGG | - | chr3_1:71490162-71490181 | None:intergenic | 25.0% |
| ! | TTCTCTCACTAAAAAAACTA+GGG | - | chr3_1:71490200-71490219 | None:intergenic | 25.0% |
| ! | TTTCTCTCACTAAAAAAACT+AGG | - | chr3_1:71490201-71490220 | None:intergenic | 25.0% |
| ! | TTATTTAGATCGAAAGAAAG+TGG | - | chr3_1:71490322-71490341 | None:intergenic | 25.0% |
| ! | CACAGATTTAATCAATGATT+TGG | + | chr3_1:71490503-71490522 | Msa0372790:intron | 25.0% |
| ! | ATGATAAAATCTAAATCACC+AGG | - | chr3_1:71490562-71490581 | None:intergenic | 25.0% |
| !! | TTATATGTGATGATTTGTGA+GGG | - | chr3_1:71490889-71490908 | None:intergenic | 25.0% |
| !! | TTTATATGTGATGATTTGTG+AGG | - | chr3_1:71490890-71490909 | None:intergenic | 25.0% |
| ! | TCGCAATTTATAACATTGTT+GGG | - | chr3_1:71490919-71490938 | None:intergenic | 25.0% |
| ! | ATCGCAATTTATAACATTGT+TGG | - | chr3_1:71490920-71490939 | None:intergenic | 25.0% |
| !! | ATTTGGTTTAGTGTCTATTA+TGG | + | chr3_1:71491184-71491203 | Msa0372790:intron | 25.0% |
| !!! | TTTATTCAAGTTGAGTTGTA+TGG | - | chr3_1:71491232-71491251 | None:intergenic | 25.0% |
| TGCGTGAATAAAATATTGAC+AGG | - | chr3_1:71490125-71490144 | None:intergenic | 30.0% | |
| TTAAGACCATAGTTGTACTT+TGG | + | chr3_1:71490174-71490193 | Msa0372790:intron | 30.0% | |
| AAGTGGAAAAAAGATTCAGA+GGG | - | chr3_1:71490305-71490324 | None:intergenic | 30.0% | |
| AAAGTGGAAAAAAGATTCAG+AGG | - | chr3_1:71490306-71490325 | None:intergenic | 30.0% | |
| ! | TATATGTGATGATTTGTGAG+GGG | - | chr3_1:71490888-71490907 | None:intergenic | 30.0% |
| CAATTTATAACATTGTTGGG+TGG | - | chr3_1:71490916-71490935 | None:intergenic | 30.0% | |
| ! | TTGAAGAGGAAGTGTATTAA+TGG | + | chr3_1:71491498-71491517 | Msa0372790:CDS | 30.0% |
| AACCATAAATTGCTTCTTTG+CGG | - | chr3_1:71491625-71491644 | None:intergenic | 30.0% | |
| TGCGTGAATAAAATATTGAC+AGG | - | chr3_1:71490125-71490144 | None:intergenic | 30.0% | |
| TTAAGACCATAGTTGTACTT+TGG | + | chr3_1:71490174-71490193 | Msa0372790:intron | 30.0% | |
| AAGTGGAAAAAAGATTCAGA+GGG | - | chr3_1:71490305-71490324 | None:intergenic | 30.0% | |
| AAAGTGGAAAAAAGATTCAG+AGG | - | chr3_1:71490306-71490325 | None:intergenic | 30.0% | |
| ! | TATATGTGATGATTTGTGAG+GGG | - | chr3_1:71490888-71490907 | None:intergenic | 30.0% |
| CAATTTATAACATTGTTGGG+TGG | - | chr3_1:71490916-71490935 | None:intergenic | 30.0% | |
| ! | TTGAAGAGGAAGTGTATTAA+TGG | + | chr3_1:71491498-71491517 | Msa0372790:CDS | 30.0% |
| AACCATAAATTGCTTCTTTG+CGG | - | chr3_1:71491625-71491644 | None:intergenic | 30.0% | |
| TGTGTGAAACTTACTTGGAA+AGG | - | chr3_1:71490085-71490104 | None:intergenic | 35.0% | |
| ! | TGGTTTGTGTGAAACTTACT+TGG | - | chr3_1:71490090-71490109 | None:intergenic | 35.0% |
| AGGAAAACTTAGAGAGAAGT+TGG | - | chr3_1:71490226-71490245 | None:intergenic | 35.0% | |
| AGTGGAAAAAAGATTCAGAG+GGG | - | chr3_1:71490304-71490323 | None:intergenic | 35.0% | |
| !! | TTTGATTTGGCATCTTGTTG+CGG | + | chr3_1:71490441-71490460 | Msa0372790:intron | 35.0% |
| CCCAAGTTAATAGCATACAA+CGG | - | chr3_1:71490601-71490620 | None:intergenic | 35.0% | |
| CCGTTGTATGCTATTAACTT+GGG | + | chr3_1:71490598-71490617 | Msa0372790:CDS | 35.0% | |
| CAAGATCGCTAAAAACGTAA+AGG | - | chr3_1:71490650-71490669 | None:intergenic | 35.0% | |
| AGAAAGAAAGAGTTCAAGGT+TGG | - | chr3_1:71490796-71490815 | None:intergenic | 35.0% | |
| TGTGAGAAAGAAAGAGTTCA+AGG | - | chr3_1:71490800-71490819 | None:intergenic | 35.0% | |
| GTTGTGACTACATATAGTTG+TGG | - | chr3_1:71490949-71490968 | None:intergenic | 35.0% | |
| AATACAACCGATATAACCAG+CGG | - | chr3_1:71491420-71491439 | None:intergenic | 35.0% | |
| TATTTGTCTGTGATTCTCTG+TGG | + | chr3_1:71491436-71491455 | Msa0372790:intron | 35.0% | |
| ATTCTCTGTGGCAGATATAT+CGG | + | chr3_1:71491448-71491467 | Msa0372790:intron | 35.0% | |
| ! | TTTTGGTCTGTACCAAAGTA+GGG | - | chr3_1:71491537-71491556 | None:intergenic | 35.0% |
| !! | ATTTTGGTCTGTACCAAAGT+AGG | - | chr3_1:71491538-71491557 | None:intergenic | 35.0% |
| TGTGTGAAACTTACTTGGAA+AGG | - | chr3_1:71490085-71490104 | None:intergenic | 35.0% | |
| ! | TGGTTTGTGTGAAACTTACT+TGG | - | chr3_1:71490090-71490109 | None:intergenic | 35.0% |
| AGGAAAACTTAGAGAGAAGT+TGG | - | chr3_1:71490226-71490245 | None:intergenic | 35.0% | |
| AGTGGAAAAAAGATTCAGAG+GGG | - | chr3_1:71490304-71490323 | None:intergenic | 35.0% | |
| !! | TTTGATTTGGCATCTTGTTG+CGG | + | chr3_1:71490441-71490460 | Msa0372790:intron | 35.0% |
| CCCAAGTTAATAGCATACAA+CGG | - | chr3_1:71490601-71490620 | None:intergenic | 35.0% | |
| CCGTTGTATGCTATTAACTT+GGG | + | chr3_1:71490598-71490617 | Msa0372790:CDS | 35.0% | |
| CAAGATCGCTAAAAACGTAA+AGG | - | chr3_1:71490650-71490669 | None:intergenic | 35.0% | |
| AGAAAGAAAGAGTTCAAGGT+TGG | - | chr3_1:71490796-71490815 | None:intergenic | 35.0% | |
| TGTGAGAAAGAAAGAGTTCA+AGG | - | chr3_1:71490800-71490819 | None:intergenic | 35.0% | |
| GTTGTGACTACATATAGTTG+TGG | - | chr3_1:71490949-71490968 | None:intergenic | 35.0% | |
| AATACAACCGATATAACCAG+CGG | - | chr3_1:71491420-71491439 | None:intergenic | 35.0% | |
| TATTTGTCTGTGATTCTCTG+TGG | + | chr3_1:71491436-71491455 | Msa0372790:intron | 35.0% | |
| ATTCTCTGTGGCAGATATAT+CGG | + | chr3_1:71491448-71491467 | Msa0372790:intron | 35.0% | |
| ! | TTTTGGTCTGTACCAAAGTA+GGG | - | chr3_1:71491537-71491556 | None:intergenic | 35.0% |
| !! | ATTTTGGTCTGTACCAAAGT+AGG | - | chr3_1:71491538-71491557 | None:intergenic | 35.0% |
| CTCAGTCTTTGCTTCTCTTA+CGG | - | chr3_1:71490035-71490054 | None:intergenic | 40.0% | |
| ACTTGGAAAGGTTGTCTTTG+TGG | - | chr3_1:71490073-71490092 | None:intergenic | 40.0% | |
| TTGACAGGATGGGAAAATGA+TGG | - | chr3_1:71490110-71490129 | None:intergenic | 40.0% | |
| ! | AGATTCAGAGGGGTGATTTT+AGG | - | chr3_1:71490294-71490313 | None:intergenic | 40.0% |
| GCCGTTGTATGCTATTAACT+TGG | + | chr3_1:71490597-71490616 | Msa0372790:CDS | 40.0% | |
| !! | AAAGAGTTCAAGGTTGGTGA+GGG | - | chr3_1:71490790-71490809 | None:intergenic | 40.0% |
| ! | AGCTACCACAATTTTTGCGA+GGG | - | chr3_1:71491394-71491413 | None:intergenic | 40.0% |
| ! | AAGCTACCACAATTTTTGCG+AGG | - | chr3_1:71491395-71491414 | None:intergenic | 40.0% |
| !!! | CAAAATGCAGCTAGCTTTTG+CGG | + | chr3_1:71491552-71491571 | Msa0372790:CDS | 40.0% |
| CATAAATTGCTTCTTTGCGG+TGG | - | chr3_1:71491622-71491641 | None:intergenic | 40.0% | |
| CACCGCAAAGAAGCAATTTA+TGG | + | chr3_1:71491620-71491639 | Msa0372790:CDS | 40.0% | |
| CTCAGTCTTTGCTTCTCTTA+CGG | - | chr3_1:71490035-71490054 | None:intergenic | 40.0% | |
| ACTTGGAAAGGTTGTCTTTG+TGG | - | chr3_1:71490073-71490092 | None:intergenic | 40.0% | |
| TTGACAGGATGGGAAAATGA+TGG | - | chr3_1:71490110-71490129 | None:intergenic | 40.0% | |
| ! | AGATTCAGAGGGGTGATTTT+AGG | - | chr3_1:71490294-71490313 | None:intergenic | 40.0% |
| GCCGTTGTATGCTATTAACT+TGG | + | chr3_1:71490597-71490616 | Msa0372790:CDS | 40.0% | |
| !! | AAAGAGTTCAAGGTTGGTGA+GGG | - | chr3_1:71490790-71490809 | None:intergenic | 40.0% |
| ! | AGCTACCACAATTTTTGCGA+GGG | - | chr3_1:71491394-71491413 | None:intergenic | 40.0% |
| ! | AAGCTACCACAATTTTTGCG+AGG | - | chr3_1:71491395-71491414 | None:intergenic | 40.0% |
| !!! | CAAAATGCAGCTAGCTTTTG+CGG | + | chr3_1:71491552-71491571 | Msa0372790:CDS | 40.0% |
| CATAAATTGCTTCTTTGCGG+TGG | - | chr3_1:71491622-71491641 | None:intergenic | 40.0% | |
| CACCGCAAAGAAGCAATTTA+TGG | + | chr3_1:71491620-71491639 | Msa0372790:CDS | 40.0% | |
| CTAGGGCCAAAGTACAACTA+TGG | - | chr3_1:71490183-71490202 | None:intergenic | 45.0% | |
| TCCTTCTCTTTCACTCATCG+AGG | + | chr3_1:71490242-71490261 | Msa0372790:intron | 45.0% | |
| TCCTCGATGAGTGAAAGAGA+AGG | - | chr3_1:71490246-71490265 | None:intergenic | 45.0% | |
| TTCTCTTTCACTCATCGAGG+AGG | + | chr3_1:71490245-71490264 | Msa0372790:intron | 45.0% | |
| TCTCTTTCACTCATCGAGGA+GGG | + | chr3_1:71490246-71490265 | Msa0372790:intron | 45.0% | |
| ACAAGACGACGAACAACACA+AGG | - | chr3_1:71490412-71490431 | None:intergenic | 45.0% | |
| TTGTGCGGCGTTGTTTGATT+TGG | + | chr3_1:71490428-71490447 | Msa0372790:intron | 45.0% | |
| !! | ATCCAGAAGCAAGAGTATCC+TGG | + | chr3_1:71490541-71490560 | Msa0372790:CDS | 45.0% |
| TGTGAATAGCACGTGGTGAA+GGG | - | chr3_1:71490763-71490782 | None:intergenic | 45.0% | |
| !! | GAAAGAGTTCAAGGTTGGTG+AGG | - | chr3_1:71490791-71490810 | None:intergenic | 45.0% |
| GGTTAGCAACGTGAATGATG+TGG | - | chr3_1:71490841-71490860 | None:intergenic | 45.0% | |
| GAACGTTGGTCATGTGAATG+TGG | - | chr3_1:71490862-71490881 | None:intergenic | 45.0% | |
| CGCGCCTATAGTTATATCCA+GGG | + | chr3_1:71490991-71491010 | Msa0372790:intron | 45.0% | |
| GCGCCTATAGTTATATCCAG+GGG | + | chr3_1:71490992-71491011 | Msa0372790:intron | 45.0% | |
| TCGCCCCTGGATATAACTAT+AGG | - | chr3_1:71490998-71491017 | None:intergenic | 45.0% | |
| TAGTTATATCCAGGGGCGAA+TGG | + | chr3_1:71490999-71491018 | Msa0372790:intron | 45.0% | |
| GCGAATGGCTGTATAGTCAT+GGG | + | chr3_1:71491014-71491033 | Msa0372790:intron | 45.0% | |
| CGAATGGCTGTATAGTCATG+GGG | + | chr3_1:71491015-71491034 | Msa0372790:intron | 45.0% | |
| GTATAGTCATGGGGTAGCAT+TGG | + | chr3_1:71491024-71491043 | Msa0372790:intron | 45.0% | |
| ! | CTACCACAATTTTTGCGAGG+GGG | - | chr3_1:71491392-71491411 | None:intergenic | 45.0% |
| ! | GCTACCACAATTTTTGCGAG+GGG | - | chr3_1:71491393-71491412 | None:intergenic | 45.0% |
| !! | CAGATATATCGGTGCTGTGT+GGG | + | chr3_1:71491459-71491478 | Msa0372790:intron | 45.0% |
| !! | AGATATATCGGTGCTGTGTG+GGG | + | chr3_1:71491460-71491479 | Msa0372790:intron | 45.0% |
| TGCATCTTTGCACCCTACTT+TGG | + | chr3_1:71491522-71491541 | Msa0372790:CDS | 45.0% | |
| ! | CGCAAAAGCTAGCTGCATTT+TGG | - | chr3_1:71491554-71491573 | None:intergenic | 45.0% |
| TTTCTCCAAAGCACGAATGG+TGG | - | chr3_1:71491654-71491673 | None:intergenic | 45.0% | |
| ! | CTGTTTCTCCAAAGCACGAA+TGG | - | chr3_1:71491657-71491676 | None:intergenic | 45.0% |
| !! | CATTCGTGCTTTGGAGAAAC+AGG | + | chr3_1:71491655-71491674 | Msa0372790:CDS | 45.0% |
| CTAGGGCCAAAGTACAACTA+TGG | - | chr3_1:71490183-71490202 | None:intergenic | 45.0% | |
| TCCTTCTCTTTCACTCATCG+AGG | + | chr3_1:71490242-71490261 | Msa0372790:intron | 45.0% | |
| TCCTCGATGAGTGAAAGAGA+AGG | - | chr3_1:71490246-71490265 | None:intergenic | 45.0% | |
| TTCTCTTTCACTCATCGAGG+AGG | + | chr3_1:71490245-71490264 | Msa0372790:intron | 45.0% | |
| TCTCTTTCACTCATCGAGGA+GGG | + | chr3_1:71490246-71490265 | Msa0372790:intron | 45.0% | |
| ACAAGACGACGAACAACACA+AGG | - | chr3_1:71490412-71490431 | None:intergenic | 45.0% | |
| TTGTGCGGCGTTGTTTGATT+TGG | + | chr3_1:71490428-71490447 | Msa0372790:intron | 45.0% | |
| !! | ATCCAGAAGCAAGAGTATCC+TGG | + | chr3_1:71490541-71490560 | Msa0372790:CDS | 45.0% |
| TGTGAATAGCACGTGGTGAA+GGG | - | chr3_1:71490763-71490782 | None:intergenic | 45.0% | |
| !! | GAAAGAGTTCAAGGTTGGTG+AGG | - | chr3_1:71490791-71490810 | None:intergenic | 45.0% |
| GGTTAGCAACGTGAATGATG+TGG | - | chr3_1:71490841-71490860 | None:intergenic | 45.0% | |
| GAACGTTGGTCATGTGAATG+TGG | - | chr3_1:71490862-71490881 | None:intergenic | 45.0% | |
| CGCGCCTATAGTTATATCCA+GGG | + | chr3_1:71490991-71491010 | Msa0372790:intron | 45.0% | |
| GCGCCTATAGTTATATCCAG+GGG | + | chr3_1:71490992-71491011 | Msa0372790:intron | 45.0% | |
| TCGCCCCTGGATATAACTAT+AGG | - | chr3_1:71490998-71491017 | None:intergenic | 45.0% | |
| TAGTTATATCCAGGGGCGAA+TGG | + | chr3_1:71490999-71491018 | Msa0372790:intron | 45.0% | |
| GCGAATGGCTGTATAGTCAT+GGG | + | chr3_1:71491014-71491033 | Msa0372790:intron | 45.0% | |
| CGAATGGCTGTATAGTCATG+GGG | + | chr3_1:71491015-71491034 | Msa0372790:intron | 45.0% | |
| GTATAGTCATGGGGTAGCAT+TGG | + | chr3_1:71491024-71491043 | Msa0372790:intron | 45.0% | |
| ! | CTACCACAATTTTTGCGAGG+GGG | - | chr3_1:71491392-71491411 | None:intergenic | 45.0% |
| ! | GCTACCACAATTTTTGCGAG+GGG | - | chr3_1:71491393-71491412 | None:intergenic | 45.0% |
| !! | CAGATATATCGGTGCTGTGT+GGG | + | chr3_1:71491459-71491478 | Msa0372790:intron | 45.0% |
| !! | AGATATATCGGTGCTGTGTG+GGG | + | chr3_1:71491460-71491479 | Msa0372790:intron | 45.0% |
| TGCATCTTTGCACCCTACTT+TGG | + | chr3_1:71491522-71491541 | Msa0372790:CDS | 45.0% | |
| ! | CGCAAAAGCTAGCTGCATTT+TGG | - | chr3_1:71491554-71491573 | None:intergenic | 45.0% |
| TTTCTCCAAAGCACGAATGG+TGG | - | chr3_1:71491654-71491673 | None:intergenic | 45.0% | |
| ! | CTGTTTCTCCAAAGCACGAA+TGG | - | chr3_1:71491657-71491676 | None:intergenic | 45.0% |
| !! | CATTCGTGCTTTGGAGAAAC+AGG | + | chr3_1:71491655-71491674 | Msa0372790:CDS | 45.0% |
| GCTTCTCTTACGGCGTAGAT+TGG | - | chr3_1:71490025-71490044 | None:intergenic | 50.0% | |
| CTCTTTCACTCATCGAGGAG+GGG | + | chr3_1:71490247-71490266 | Msa0372790:intron | 50.0% | |
| ! | GTGTTGTTCGTCGTCTTGTG+CGG | + | chr3_1:71490413-71490432 | Msa0372790:intron | 50.0% |
| CATCTTGTTGCGGTGTTCGT+TGG | + | chr3_1:71490451-71490470 | Msa0372790:intron | 50.0% | |
| CACCAGGATACTCTTGCTTC+TGG | - | chr3_1:71490546-71490565 | None:intergenic | 50.0% | |
| GTGAATAGCACGTGGTGAAG+GGG | - | chr3_1:71490762-71490781 | None:intergenic | 50.0% | |
| GTGTGAATAGCACGTGGTGA+AGG | - | chr3_1:71490764-71490783 | None:intergenic | 50.0% | |
| TTTGTGAGGGGAGTGAACGT+TGG | - | chr3_1:71490876-71490895 | None:intergenic | 50.0% | |
| GCGCGCCTATAGTTATATCC+AGG | + | chr3_1:71490990-71491009 | Msa0372790:intron | 50.0% | |
| GGCGAATGGCTGTATAGTCA+TGG | + | chr3_1:71491013-71491032 | Msa0372790:intron | 50.0% | |
| !! | GTAGCATTGGCTACCCCAAA+AGG | + | chr3_1:71491037-71491056 | Msa0372790:intron | 50.0% |
| ! | AGCTTCGCCGCTGGTTATAT+CGG | + | chr3_1:71491410-71491429 | Msa0372790:intron | 50.0% |
| !! | GCAGATATATCGGTGCTGTG+TGG | + | chr3_1:71491458-71491477 | Msa0372790:intron | 50.0% |
| CTCTTCAAGTGCTTGCAAGC+AGG | - | chr3_1:71491486-71491505 | None:intergenic | 50.0% | |
| CTGCTTGCAAGCACTTGAAG+AGG | + | chr3_1:71491484-71491503 | Msa0372790:CDS | 50.0% | |
| AGCTCCAAAGACCTTGTGCA+CGG | - | chr3_1:71491578-71491597 | None:intergenic | 50.0% | |
| ! | GCGGTGGTTAGTTGGAATAG+TGG | - | chr3_1:71491606-71491625 | None:intergenic | 50.0% |
| GCTTCTTTGCGGTGGTTAGT+TGG | - | chr3_1:71491614-71491633 | None:intergenic | 50.0% | |
| TGTGTCCACCATTCGTGCTT+TGG | + | chr3_1:71491646-71491665 | Msa0372790:CDS | 50.0% | |
| GCTTCTCTTACGGCGTAGAT+TGG | - | chr3_1:71490025-71490044 | None:intergenic | 50.0% | |
| CTCTTTCACTCATCGAGGAG+GGG | + | chr3_1:71490247-71490266 | Msa0372790:intron | 50.0% | |
| ! | GTGTTGTTCGTCGTCTTGTG+CGG | + | chr3_1:71490413-71490432 | Msa0372790:intron | 50.0% |
| CATCTTGTTGCGGTGTTCGT+TGG | + | chr3_1:71490451-71490470 | Msa0372790:intron | 50.0% | |
| CACCAGGATACTCTTGCTTC+TGG | - | chr3_1:71490546-71490565 | None:intergenic | 50.0% | |
| GTGAATAGCACGTGGTGAAG+GGG | - | chr3_1:71490762-71490781 | None:intergenic | 50.0% | |
| GTGTGAATAGCACGTGGTGA+AGG | - | chr3_1:71490764-71490783 | None:intergenic | 50.0% | |
| TTTGTGAGGGGAGTGAACGT+TGG | - | chr3_1:71490876-71490895 | None:intergenic | 50.0% | |
| GCGCGCCTATAGTTATATCC+AGG | + | chr3_1:71490990-71491009 | Msa0372790:intron | 50.0% | |
| GGCGAATGGCTGTATAGTCA+TGG | + | chr3_1:71491013-71491032 | Msa0372790:intron | 50.0% | |
| !! | GTAGCATTGGCTACCCCAAA+AGG | + | chr3_1:71491037-71491056 | Msa0372790:intron | 50.0% |
| ! | AGCTTCGCCGCTGGTTATAT+CGG | + | chr3_1:71491410-71491429 | Msa0372790:intron | 50.0% |
| !! | GCAGATATATCGGTGCTGTG+TGG | + | chr3_1:71491458-71491477 | Msa0372790:intron | 50.0% |
| CTCTTCAAGTGCTTGCAAGC+AGG | - | chr3_1:71491486-71491505 | None:intergenic | 50.0% | |
| CTGCTTGCAAGCACTTGAAG+AGG | + | chr3_1:71491484-71491503 | Msa0372790:CDS | 50.0% | |
| AGCTCCAAAGACCTTGTGCA+CGG | - | chr3_1:71491578-71491597 | None:intergenic | 50.0% | |
| ! | GCGGTGGTTAGTTGGAATAG+TGG | - | chr3_1:71491606-71491625 | None:intergenic | 50.0% |
| GCTTCTTTGCGGTGGTTAGT+TGG | - | chr3_1:71491614-71491633 | None:intergenic | 50.0% | |
| TGTGTCCACCATTCGTGCTT+TGG | + | chr3_1:71491646-71491665 | Msa0372790:CDS | 50.0% | |
| TTTCACTCATCGAGGAGGGG+TGG | + | chr3_1:71490250-71490269 | Msa0372790:intron | 55.0% | |
| ! | CATCGAGGAGGGGTGGTTTT+AGG | + | chr3_1:71490257-71490276 | Msa0372790:intron | 55.0% |
| ! | GGGAGTGTGTGAATAGCACG+TGG | - | chr3_1:71490770-71490789 | None:intergenic | 55.0% |
| ACTATACAGCCATTCGCCCC+TGG | - | chr3_1:71491011-71491030 | None:intergenic | 55.0% | |
| TGGCCCCCTCGCAAAAATTG+TGG | + | chr3_1:71491386-71491405 | Msa0372790:intron | 55.0% | |
| AATTGTGGTAGCTTCGCCGC+TGG | + | chr3_1:71491401-71491420 | Msa0372790:intron | 55.0% | |
| TTTCACTCATCGAGGAGGGG+TGG | + | chr3_1:71490250-71490269 | Msa0372790:intron | 55.0% | |
| ! | CATCGAGGAGGGGTGGTTTT+AGG | + | chr3_1:71490257-71490276 | Msa0372790:intron | 55.0% |
| ! | GGGAGTGTGTGAATAGCACG+TGG | - | chr3_1:71490770-71490789 | None:intergenic | 55.0% |
| ACTATACAGCCATTCGCCCC+TGG | - | chr3_1:71491011-71491030 | None:intergenic | 55.0% | |
| TGGCCCCCTCGCAAAAATTG+TGG | + | chr3_1:71491386-71491405 | Msa0372790:intron | 55.0% | |
| AATTGTGGTAGCTTCGCCGC+TGG | + | chr3_1:71491401-71491420 | Msa0372790:intron | 55.0% | |
| ! | AGCTTTTGCGGCCGTGCACA+AGG | + | chr3_1:71491564-71491583 | Msa0372790:CDS | 60.0% |
| ! | AGCTTTTGCGGCCGTGCACA+AGG | + | chr3_1:71491564-71491583 | Msa0372790:CDS | 60.0% |
| GCGGCCGTGCACAAGGTCTT+TGG | + | chr3_1:71491571-71491590 | Msa0372790:CDS | 65.0% | |
| GCGGCCGTGCACAAGGTCTT+TGG | + | chr3_1:71491571-71491590 | Msa0372790:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 71490013 | 71491707 | 71490013 | ID=Msa0372790;Name=Msa0372790 |
| chr3_1 | mRNA | 71490013 | 71491707 | 71490013 | ID=Msa0372790-mRNA-1;Parent=Msa0372790;Name=Msa0372790-mRNA-1;_AED=0.83;_eAED=0.83;_QI=0|0|0|0.33|1|1|3|0|135 |
| chr3_1 | exon | 71490013 | 71490090 | 71490013 | ID=Msa0372790-mRNA-1:exon:15753;Parent=Msa0372790-mRNA-1 |
| chr3_1 | exon | 71490541 | 71490624 | 71490541 | ID=Msa0372790-mRNA-1:exon:15754;Parent=Msa0372790-mRNA-1 |
| chr3_1 | exon | 71491462 | 71491707 | 71491462 | ID=Msa0372790-mRNA-1:exon:15755;Parent=Msa0372790-mRNA-1 |
| chr3_1 | CDS | 71490013 | 71490090 | 71490013 | ID=Msa0372790-mRNA-1:cds;Parent=Msa0372790-mRNA-1 |
| chr3_1 | CDS | 71490541 | 71490624 | 71490541 | ID=Msa0372790-mRNA-1:cds;Parent=Msa0372790-mRNA-1 |
| chr3_1 | CDS | 71491462 | 71491707 | 71491462 | ID=Msa0372790-mRNA-1:cds;Parent=Msa0372790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
