Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373100 | AES71974.2 | 72.821 | 195 | 15 | 2 | 1 | 184 | 1 | 168 | 3.31e-55 | 190 |
| Msa0373100 | AES71974.2 | 91.129 | 124 | 11 | 0 | 206 | 329 | 106 | 229 | 5.06e-74 | 238 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373100 | G7JBB9 | 72.821 | 195 | 15 | 2 | 1 | 184 | 1 | 168 | 1.58e-55 | 190 |
| Msa0373100 | G7JBB9 | 91.129 | 124 | 11 | 0 | 206 | 329 | 106 | 229 | 2.42e-74 | 238 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0373100 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373100 | MtrunA17_Chr3g0122071 | 90.598 | 117 | 11 | 0 | 213 | 329 | 106 | 222 | 5.77e-73 | 225 |
| Msa0373100 | MtrunA17_Chr3g0122071 | 69.744 | 195 | 14 | 2 | 1 | 184 | 1 | 161 | 7.36e-54 | 176 |
| Msa0373100 | MtrunA17_Chr4g0064011 | 54.545 | 176 | 60 | 8 | 1 | 174 | 1 | 158 | 2.03e-42 | 147 |
| Msa0373100 | MtrunA17_Chr4g0064011 | 60.606 | 132 | 49 | 3 | 202 | 332 | 103 | 232 | 2.54e-39 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373100 | AT5G22990.1 | 51.807 | 83 | 40 | 0 | 220 | 302 | 232 | 314 | 9.74e-20 | 88.6 |
| Msa0373100 | AT5G22990.1 | 51.282 | 78 | 24 | 2 | 136 | 213 | 232 | 295 | 3.98e-16 | 78.6 |
| Msa0373100 | AT2G18490.1 | 53.425 | 73 | 33 | 1 | 207 | 279 | 142 | 213 | 5.97e-17 | 79.7 |
| Msa0373100 | AT2G18490.1 | 60.000 | 60 | 23 | 1 | 123 | 182 | 142 | 200 | 4.30e-15 | 74.3 |
| Msa0373100 | AT2G18490.2 | 53.425 | 73 | 33 | 1 | 207 | 279 | 192 | 263 | 6.70e-17 | 80.5 |
| Msa0373100 | AT2G18490.2 | 58.065 | 62 | 25 | 1 | 123 | 184 | 192 | 252 | 5.40e-15 | 74.7 |
| Msa0373100 | AT2G15740.1 | 52.564 | 78 | 32 | 2 | 209 | 286 | 219 | 291 | 1.08e-16 | 80.1 |
| Msa0373100 | AT2G15740.1 | 60.000 | 60 | 23 | 1 | 125 | 184 | 219 | 277 | 8.29e-16 | 77.4 |
| Msa0373100 | AT5G42640.1 | 52.113 | 71 | 29 | 2 | 213 | 279 | 218 | 287 | 2.98e-15 | 75.5 |
| Msa0373100 | AT5G42640.1 | 39.216 | 102 | 57 | 2 | 85 | 182 | 174 | 274 | 4.96e-13 | 68.9 |
Find 38 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATTAATATTTATATTAA+TGG | 0.098823 | 3_1:-72078939 | None:intergenic |
| TCAATTGGTACCAATAATTT+TGG | 0.136685 | 3_1:+72078827 | Msa0373100:CDS |
| AGCATGACTTCCAAAATTAT+TGG | 0.299809 | 3_1:-72078837 | None:intergenic |
| AGCCTACCTCACAAGAAATA+TGG | 0.344617 | 3_1:+72079187 | Msa0373100:CDS |
| AGCCTACCTCACAAGAAATA+TGG | 0.344617 | 3_1:+72079539 | Msa0373100:CDS |
| GAGATTCTTGAAGGTCAGTT+TGG | 0.349001 | 3_1:+72078881 | Msa0373100:CDS |
| ATTTCTTGTGAGGTAGGCTA+TGG | 0.375103 | 3_1:-72079183 | None:intergenic |
| ATTTCTTGTGAGGTAGGCTA+TGG | 0.375103 | 3_1:-72079535 | None:intergenic |
| ATCGTTCTTGTTCCGAAGCA+TGG | 0.393851 | 3_1:-72079465 | None:intergenic |
| ACAATAATAGATTGTTTCAA+TGG | 0.400008 | 3_1:+72078771 | Msa0373100:CDS |
| TATTAATATTAATTATTTGA+AGG | 0.413280 | 3_1:-72079851 | None:intergenic |
| AGATTCTTGAAGGTCAGTTT+GGG | 0.424623 | 3_1:+72078882 | Msa0373100:CDS |
| TTATCAGTACAAGCAATAAC+AGG | 0.454560 | 3_1:-72079746 | None:intergenic |
| ACTCATTCATCATCATCAAT+TGG | 0.471297 | 3_1:+72078812 | Msa0373100:CDS |
| AGCAATGAAAATATTGATGA+TGG | 0.472887 | 3_1:+72079154 | Msa0373100:CDS |
| AGCAATGAAAATATTGATGA+TGG | 0.472887 | 3_1:+72079506 | Msa0373100:CDS |
| ATTGCTCTTACCCCATGCTT+CGG | 0.472890 | 3_1:+72079453 | Msa0373100:CDS |
| ACATCTCCAACATCAGCAAC+AGG | 0.474279 | 3_1:-72079100 | None:intergenic |
| TCGTTCTTGTTCCGAAGCAT+GGG | 0.482038 | 3_1:-72079464 | None:intergenic |
| CAGATTCAAAAGCTCAATGA+TGG | 0.486601 | 3_1:+72079707 | Msa0373100:CDS |
| AATATTCCTGTTGCTGATGT+TGG | 0.486932 | 3_1:+72079094 | Msa0373100:CDS |
| TCTCATCTTGATCTCCGTGT+AGG | 0.496262 | 3_1:+72079031 | Msa0373100:CDS |
| AAAGCGATGGAGATTCTTGA+AGG | 0.521307 | 3_1:+72078872 | Msa0373100:CDS |
| CTCTTACCCCTCTTCCAAGT+GGG | 0.526442 | 3_1:+72079810 | Msa0373100:CDS |
| TTTCTTGTGAGGTAGGCTAT+GGG | 0.526908 | 3_1:-72079182 | None:intergenic |
| TTTCTTGTGAGGTAGGCTAT+GGG | 0.526908 | 3_1:-72079534 | None:intergenic |
| AGATTGTTTCAATGGATGCA+TGG | 0.544477 | 3_1:+72078779 | Msa0373100:CDS |
| GGAATATTAATCATTTGAGA+AGG | 0.562733 | 3_1:-72079079 | None:intergenic |
| TTCGGAACAAGAACGATATG+AGG | 0.569024 | 3_1:+72079471 | Msa0373100:CDS |
| TACGGTCCATATTTCTTGTG+AGG | 0.577081 | 3_1:-72079193 | None:intergenic |
| TACGGTCCATATTTCTTGTG+AGG | 0.577081 | 3_1:-72079545 | None:intergenic |
| GCTCTTACCCCTCTTCCAAG+TGG | 0.581741 | 3_1:+72079809 | Msa0373100:CDS |
| GTCCATATTTCTTGTGAGGT+AGG | 0.582227 | 3_1:-72079189 | None:intergenic |
| GTCCATATTTCTTGTGAGGT+AGG | 0.582227 | 3_1:-72079541 | None:intergenic |
| TCCGGGAATCCTAAAAGCGA+TGG | 0.625731 | 3_1:+72078859 | Msa0373100:CDS |
| CGTTCTTGTTCCGAAGCATG+GGG | 0.647153 | 3_1:-72079463 | None:intergenic |
| ATGTTAACAAGAACGATGTG+AGG | 0.658974 | 3_1:+72079119 | Msa0373100:CDS |
| ATTGTGATGATAAGCCTACA+CGG | 0.769789 | 3_1:-72079045 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATAATAGATTGTTTCAA+TGG | + | chr3_1:72078771-72078790 | Msa0373100:CDS | 20.0% |
| !!! | TTTTGTTACATTTTGAACAT+GGG | - | chr3_1:72079571-72079590 | None:intergenic | 20.0% |
| !!! | ATTTTGTTACATTTTGAACA+TGG | - | chr3_1:72079572-72079591 | None:intergenic | 20.0% |
| !! | ACAATAATAGATTGTTTCAA+TGG | + | chr3_1:72078771-72078790 | Msa0373100:CDS | 20.0% |
| !!! | TTTTGTTACATTTTGAACAT+GGG | - | chr3_1:72079571-72079590 | None:intergenic | 20.0% |
| !!! | ATTTTGTTACATTTTGAACA+TGG | - | chr3_1:72079572-72079591 | None:intergenic | 20.0% |
| !! | TCAATTGGTACCAATAATTT+TGG | + | chr3_1:72078827-72078846 | Msa0373100:CDS | 25.0% |
| ! | GGAATATTAATCATTTGAGA+AGG | - | chr3_1:72079082-72079101 | None:intergenic | 25.0% |
| ! | AGCAATGAAAATATTGATGA+TGG | + | chr3_1:72079154-72079173 | Msa0373100:CDS | 25.0% |
| !! | TTTTGTTGCATTTTGAACAT+GGG | - | chr3_1:72079219-72079238 | None:intergenic | 25.0% |
| !! | ATTTTGTTGCATTTTGAACA+TGG | - | chr3_1:72079220-72079239 | None:intergenic | 25.0% |
| ! | AGAAAAAGAGATACATTTCT+AGG | + | chr3_1:72079310-72079329 | Msa0373100:CDS | 25.0% |
| ! | AGCAATGAAAATATTGATGA+TGG | + | chr3_1:72079154-72079173 | Msa0373100:CDS | 25.0% |
| ! | GAAAAAAGAGATACATTTCT+AGG | + | chr3_1:72079663-72079682 | Msa0373100:CDS | 25.0% |
| !! | TCAATTGGTACCAATAATTT+TGG | + | chr3_1:72078827-72078846 | Msa0373100:CDS | 25.0% |
| ! | GGAATATTAATCATTTGAGA+AGG | - | chr3_1:72079082-72079101 | None:intergenic | 25.0% |
| ! | AGCAATGAAAATATTGATGA+TGG | + | chr3_1:72079154-72079173 | Msa0373100:CDS | 25.0% |
| !! | TTTTGTTGCATTTTGAACAT+GGG | - | chr3_1:72079219-72079238 | None:intergenic | 25.0% |
| !! | ATTTTGTTGCATTTTGAACA+TGG | - | chr3_1:72079220-72079239 | None:intergenic | 25.0% |
| ! | AGAAAAAGAGATACATTTCT+AGG | + | chr3_1:72079310-72079329 | Msa0373100:CDS | 25.0% |
| ! | AGCAATGAAAATATTGATGA+TGG | + | chr3_1:72079154-72079173 | Msa0373100:CDS | 25.0% |
| ! | GAAAAAAGAGATACATTTCT+AGG | + | chr3_1:72079663-72079682 | Msa0373100:CDS | 25.0% |
| ACTCATTCATCATCATCAAT+TGG | + | chr3_1:72078812-72078831 | Msa0373100:CDS | 30.0% | |
| AGCATGACTTCCAAAATTAT+TGG | - | chr3_1:72078840-72078859 | None:intergenic | 30.0% | |
| TTATCAGTACAAGCAATAAC+AGG | - | chr3_1:72079396-72079415 | None:intergenic | 30.0% | |
| ! | TTACATTTTGAACATGGGTA+CGG | - | chr3_1:72079566-72079585 | None:intergenic | 30.0% |
| TTATCAGTACAAGCAATAAC+AGG | - | chr3_1:72079396-72079415 | None:intergenic | 30.0% | |
| AAGTGGGATAAAAATCAAGT+CGG | + | chr3_1:72079826-72079845 | Msa0373100:CDS | 30.0% | |
| ACTCATTCATCATCATCAAT+TGG | + | chr3_1:72078812-72078831 | Msa0373100:CDS | 30.0% | |
| AGCATGACTTCCAAAATTAT+TGG | - | chr3_1:72078840-72078859 | None:intergenic | 30.0% | |
| TTATCAGTACAAGCAATAAC+AGG | - | chr3_1:72079396-72079415 | None:intergenic | 30.0% | |
| ! | TTACATTTTGAACATGGGTA+CGG | - | chr3_1:72079566-72079585 | None:intergenic | 30.0% |
| TTATCAGTACAAGCAATAAC+AGG | - | chr3_1:72079396-72079415 | None:intergenic | 30.0% | |
| AAGTGGGATAAAAATCAAGT+CGG | + | chr3_1:72079826-72079845 | Msa0373100:CDS | 30.0% | |
| AGATTGTTTCAATGGATGCA+TGG | + | chr3_1:72078779-72078798 | Msa0373100:CDS | 35.0% | |
| !! | TAATTTTGGAAGTCATGCTC+CGG | + | chr3_1:72078841-72078860 | Msa0373100:CDS | 35.0% |
| AGATTCTTGAAGGTCAGTTT+GGG | + | chr3_1:72078882-72078901 | Msa0373100:CDS | 35.0% | |
| ATTGTGATGATAAGCCTACA+CGG | - | chr3_1:72079048-72079067 | None:intergenic | 35.0% | |
| AATATTCCTGTTGCTGATGT+TGG | + | chr3_1:72079094-72079113 | Msa0373100:CDS | 35.0% | |
| ATGTTAACAAGAACGATGTG+AGG | + | chr3_1:72079119-72079138 | Msa0373100:CDS | 35.0% | |
| ! | TTGCATTTTGAACATGGGTA+CGG | - | chr3_1:72079214-72079233 | None:intergenic | 35.0% |
| CAGATTCAAAAGCTCAATGA+CGG | + | chr3_1:72079354-72079373 | Msa0373100:intron | 35.0% | |
| CAGATTCAAAAGCTCAATGA+TGG | + | chr3_1:72079354-72079373 | Msa0373100:intron | 35.0% | |
| ! | TTTTTATCCCACTTGGAAGA+GGG | - | chr3_1:72079820-72079839 | None:intergenic | 35.0% |
| ! | ATTTTTATCCCACTTGGAAG+AGG | - | chr3_1:72079821-72079840 | None:intergenic | 35.0% |
| ! | GACTTGATTTTTATCCCACT+TGG | - | chr3_1:72079827-72079846 | None:intergenic | 35.0% |
| AGATTGTTTCAATGGATGCA+TGG | + | chr3_1:72078779-72078798 | Msa0373100:CDS | 35.0% | |
| !! | TAATTTTGGAAGTCATGCTC+CGG | + | chr3_1:72078841-72078860 | Msa0373100:CDS | 35.0% |
| AGATTCTTGAAGGTCAGTTT+GGG | + | chr3_1:72078882-72078901 | Msa0373100:CDS | 35.0% | |
| ATTGTGATGATAAGCCTACA+CGG | - | chr3_1:72079048-72079067 | None:intergenic | 35.0% | |
| AATATTCCTGTTGCTGATGT+TGG | + | chr3_1:72079094-72079113 | Msa0373100:CDS | 35.0% | |
| ATGTTAACAAGAACGATGTG+AGG | + | chr3_1:72079119-72079138 | Msa0373100:CDS | 35.0% | |
| ! | TTGCATTTTGAACATGGGTA+CGG | - | chr3_1:72079214-72079233 | None:intergenic | 35.0% |
| CAGATTCAAAAGCTCAATGA+CGG | + | chr3_1:72079354-72079373 | Msa0373100:intron | 35.0% | |
| CAGATTCAAAAGCTCAATGA+TGG | + | chr3_1:72079354-72079373 | Msa0373100:intron | 35.0% | |
| ! | TTTTTATCCCACTTGGAAGA+GGG | - | chr3_1:72079820-72079839 | None:intergenic | 35.0% |
| ! | ATTTTTATCCCACTTGGAAG+AGG | - | chr3_1:72079821-72079840 | None:intergenic | 35.0% |
| ! | GACTTGATTTTTATCCCACT+TGG | - | chr3_1:72079827-72079846 | None:intergenic | 35.0% |
| !! | AATTTTGGAAGTCATGCTCC+GGG | + | chr3_1:72078842-72078861 | Msa0373100:CDS | 40.0% |
| !! | CAAGAATCTCCATCGCTTTT+AGG | - | chr3_1:72078871-72078890 | None:intergenic | 40.0% |
| AAAGCGATGGAGATTCTTGA+AGG | + | chr3_1:72078872-72078891 | Msa0373100:CDS | 40.0% | |
| GAGATTCTTGAAGGTCAGTT+TGG | + | chr3_1:72078881-72078900 | Msa0373100:CDS | 40.0% | |
| TTTCTTGTGAGGTAGGCTAT+GGG | - | chr3_1:72079185-72079204 | None:intergenic | 40.0% | |
| ATTTCTTGTGAGGTAGGCTA+TGG | - | chr3_1:72079186-72079205 | None:intergenic | 40.0% | |
| AGCCTACCTCACAAGAAATA+TGG | + | chr3_1:72079187-72079206 | Msa0373100:CDS | 40.0% | |
| GTCCATATTTCTTGTGAGGT+AGG | - | chr3_1:72079192-72079211 | None:intergenic | 40.0% | |
| TACGGTCCATATTTCTTGTG+AGG | - | chr3_1:72079196-72079215 | None:intergenic | 40.0% | |
| ! | AGCTTTTGAATCTGAAGACG+CGG | - | chr3_1:72079348-72079367 | None:intergenic | 40.0% |
| TTCGGAACAAGAACGATATG+AGG | + | chr3_1:72079471-72079490 | Msa0373100:CDS | 40.0% | |
| TTTCTTGTGAGGTAGGCTAT+GGG | - | chr3_1:72079185-72079204 | None:intergenic | 40.0% | |
| ATTTCTTGTGAGGTAGGCTA+TGG | - | chr3_1:72079186-72079205 | None:intergenic | 40.0% | |
| AGCCTACCTCACAAGAAATA+TGG | + | chr3_1:72079187-72079206 | Msa0373100:CDS | 40.0% | |
| GTCCATATTTCTTGTGAGGT+AGG | - | chr3_1:72079192-72079211 | None:intergenic | 40.0% | |
| TACGGTCCATATTTCTTGTG+AGG | - | chr3_1:72079196-72079215 | None:intergenic | 40.0% | |
| ! | AGCTTTTGAATCTGAAGACG+CGG | - | chr3_1:72079348-72079367 | None:intergenic | 40.0% |
| ! | TTTTATCCCACTTGGAAGAG+GGG | - | chr3_1:72079819-72079838 | None:intergenic | 40.0% |
| !! | AATTTTGGAAGTCATGCTCC+GGG | + | chr3_1:72078842-72078861 | Msa0373100:CDS | 40.0% |
| !! | CAAGAATCTCCATCGCTTTT+AGG | - | chr3_1:72078871-72078890 | None:intergenic | 40.0% |
| AAAGCGATGGAGATTCTTGA+AGG | + | chr3_1:72078872-72078891 | Msa0373100:CDS | 40.0% | |
| GAGATTCTTGAAGGTCAGTT+TGG | + | chr3_1:72078881-72078900 | Msa0373100:CDS | 40.0% | |
| TTTCTTGTGAGGTAGGCTAT+GGG | - | chr3_1:72079185-72079204 | None:intergenic | 40.0% | |
| ATTTCTTGTGAGGTAGGCTA+TGG | - | chr3_1:72079186-72079205 | None:intergenic | 40.0% | |
| AGCCTACCTCACAAGAAATA+TGG | + | chr3_1:72079187-72079206 | Msa0373100:CDS | 40.0% | |
| GTCCATATTTCTTGTGAGGT+AGG | - | chr3_1:72079192-72079211 | None:intergenic | 40.0% | |
| TACGGTCCATATTTCTTGTG+AGG | - | chr3_1:72079196-72079215 | None:intergenic | 40.0% | |
| ! | AGCTTTTGAATCTGAAGACG+CGG | - | chr3_1:72079348-72079367 | None:intergenic | 40.0% |
| TTCGGAACAAGAACGATATG+AGG | + | chr3_1:72079471-72079490 | Msa0373100:CDS | 40.0% | |
| TTTCTTGTGAGGTAGGCTAT+GGG | - | chr3_1:72079185-72079204 | None:intergenic | 40.0% | |
| ATTTCTTGTGAGGTAGGCTA+TGG | - | chr3_1:72079186-72079205 | None:intergenic | 40.0% | |
| AGCCTACCTCACAAGAAATA+TGG | + | chr3_1:72079187-72079206 | Msa0373100:CDS | 40.0% | |
| GTCCATATTTCTTGTGAGGT+AGG | - | chr3_1:72079192-72079211 | None:intergenic | 40.0% | |
| TACGGTCCATATTTCTTGTG+AGG | - | chr3_1:72079196-72079215 | None:intergenic | 40.0% | |
| ! | AGCTTTTGAATCTGAAGACG+CGG | - | chr3_1:72079348-72079367 | None:intergenic | 40.0% |
| ! | TTTTATCCCACTTGGAAGAG+GGG | - | chr3_1:72079819-72079838 | None:intergenic | 40.0% |
| !!! | TCCATCGCTTTTAGGATTCC+CGG | - | chr3_1:72078863-72078882 | None:intergenic | 45.0% |
| TCTCATCTTGATCTCCGTGT+AGG | + | chr3_1:72079031-72079050 | Msa0373100:CDS | 45.0% | |
| ACATCTCCAACATCAGCAAC+AGG | - | chr3_1:72079103-72079122 | None:intergenic | 45.0% | |
| ATTGCTCTTACCCCATGCTT+CGG | + | chr3_1:72079453-72079472 | Msa0373100:CDS | 45.0% | |
| TCGTTCTTGTTCCGAAGCAT+GGG | - | chr3_1:72079467-72079486 | None:intergenic | 45.0% | |
| ATCGTTCTTGTTCCGAAGCA+TGG | - | chr3_1:72079468-72079487 | None:intergenic | 45.0% | |
| !!! | TCCATCGCTTTTAGGATTCC+CGG | - | chr3_1:72078863-72078882 | None:intergenic | 45.0% |
| TCTCATCTTGATCTCCGTGT+AGG | + | chr3_1:72079031-72079050 | Msa0373100:CDS | 45.0% | |
| ACATCTCCAACATCAGCAAC+AGG | - | chr3_1:72079103-72079122 | None:intergenic | 45.0% | |
| ATTGCTCTTACCCCATGCTT+CGG | + | chr3_1:72079453-72079472 | Msa0373100:CDS | 45.0% | |
| TCGTTCTTGTTCCGAAGCAT+GGG | - | chr3_1:72079467-72079486 | None:intergenic | 45.0% | |
| ATCGTTCTTGTTCCGAAGCA+TGG | - | chr3_1:72079468-72079487 | None:intergenic | 45.0% | |
| !! | ATCATTAATATTTATATTAA+TGG | - | chr3_1:72078942-72078961 | None:intergenic | 5.0% |
| !! | ATCATTAATATTTATATTAA+TGG | - | chr3_1:72078942-72078961 | None:intergenic | 5.0% |
| TCCGGGAATCCTAAAAGCGA+TGG | + | chr3_1:72078859-72078878 | Msa0373100:CDS | 50.0% | |
| CGTTCTTGTTCCGAAGCATG+GGG | - | chr3_1:72079466-72079485 | None:intergenic | 50.0% | |
| CTCTTACCCCTCTTCCAAGT+GGG | + | chr3_1:72079810-72079829 | Msa0373100:CDS | 50.0% | |
| TCCGGGAATCCTAAAAGCGA+TGG | + | chr3_1:72078859-72078878 | Msa0373100:CDS | 50.0% | |
| CGTTCTTGTTCCGAAGCATG+GGG | - | chr3_1:72079466-72079485 | None:intergenic | 50.0% | |
| CTCTTACCCCTCTTCCAAGT+GGG | + | chr3_1:72079810-72079829 | Msa0373100:CDS | 50.0% | |
| GCTCTTACCCCTCTTCCAAG+TGG | + | chr3_1:72079809-72079828 | Msa0373100:CDS | 55.0% | |
| GCTCTTACCCCTCTTCCAAG+TGG | + | chr3_1:72079809-72079828 | Msa0373100:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 72078767 | 72079865 | 72078767 | ID=Msa0373100;Name=Msa0373100 |
| chr3_1 | mRNA | 72078767 | 72079865 | 72078767 | ID=Msa0373100-mRNA-1;Parent=Msa0373100;Name=Msa0373100-mRNA-1;_AED=0.07;_eAED=0.10;_QI=0|0|0|1|1|1|2|0|332 |
| chr3_1 | exon | 72078767 | 72079348 | 72078767 | ID=Msa0373100-mRNA-1:exon:15943;Parent=Msa0373100-mRNA-1 |
| chr3_1 | exon | 72079449 | 72079865 | 72079449 | ID=Msa0373100-mRNA-1:exon:15944;Parent=Msa0373100-mRNA-1 |
| chr3_1 | CDS | 72078767 | 72079348 | 72078767 | ID=Msa0373100-mRNA-1:cds;Parent=Msa0373100-mRNA-1 |
| chr3_1 | CDS | 72079449 | 72079865 | 72079449 | ID=Msa0373100-mRNA-1:cds;Parent=Msa0373100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
