AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0373600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0373600 MtrunA17_Chr3g0123021 88.532 436 2 3 1 434 1 390 0.0 778
Msa0373600 MtrunA17_Chr5g0409071 36.000 125 72 3 48 170 19 137 2.10e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0373600 AT1G13450.1 60.352 454 103 13 5 433 4 405 2.63e-171 486
Msa0373600 AT3G25990.1 59.712 417 103 7 21 433 16 371 2.90e-168 477
Msa0373600 AT1G13450.3 57.655 307 70 11 1 284 1 270 1.26e-95 289
Msa0373600 AT1G13450.2 57.655 307 70 11 1 284 1 270 1.26e-95 289
Msa0373600 AT1G13450.4 62.780 223 57 8 5 206 4 221 2.59e-74 232
Msa0373600 AT2G38250.1 43.878 98 43 2 38 135 17 102 3.51e-15 76.3
Msa0373600 AT5G01380.1 31.579 114 75 1 75 188 52 162 2.55e-12 68.2

Find 140 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCCCTAATTGCCTCCTTTA+TGG 0.202289 3_1:+72663407 None:intergenic
CAGGTTTCCGCGCGTTTCTT+TGG 0.225470 3_1:+72667361 None:intergenic
AAGCCATAAAGGAGGCAATT+AGG 0.234916 3_1:-72663410 Msa0373600:CDS
AACTAAACAAATACAGTTTC+AGG 0.246226 3_1:+72662758 None:intergenic
AAAGGGTAGAAGGTGGGTTT+TGG 0.252222 3_1:+72667731 None:intergenic
GATGATGCCAACATTTCTTT+TGG 0.253442 3_1:-72665081 Msa0373600:CDS
CGAAGTCGAATAAGCATCTT+TGG 0.254316 3_1:-72667273 Msa0373600:CDS
CGACTATGTGTACTGATAAA+TGG 0.279079 3_1:-72667204 Msa0373600:CDS
TCAACTCACGCCTCGGTATA+TGG 0.284610 3_1:+72662884 None:intergenic
GTTTATAATTAGTCTATAAT+AGG 0.290964 3_1:-72662725 Msa0373600:three_prime_UTR
CGAGGTGGTGGAAGTGGTTC+TGG 0.294738 3_1:-72667139 Msa0373600:CDS
GCTAACTTGTGCAAATTTCA+TGG 0.307170 3_1:-72663249 Msa0373600:intron
ATAGCATAGCTTACCATTTC+CGG 0.308477 3_1:+72663602 None:intergenic
TCTTACATGCAATTTGATAA+AGG 0.310587 3_1:-72667013 Msa0373600:intron
TAAGAGAATTTGATGGTTAT+AGG 0.317322 3_1:-72662941 Msa0373600:CDS
TGAGAACTAAACGTGCATTT+TGG 0.331340 3_1:-72663374 Msa0373600:CDS
ATTGCCTCCTTTATGGCTTC+CGG 0.339890 3_1:+72663414 None:intergenic
AATACTTGGCAATTAGCTTC+TGG 0.344639 3_1:-72663738 Msa0373600:CDS
TTATAGGAATATTGACAATA+TGG 0.365204 3_1:-72662925 Msa0373600:CDS
CAAAGAAACGCGCGGAAACC+TGG 0.365216 3_1:-72667360 Msa0373600:CDS
CTTCAGTATGCACAGGGATA+TGG 0.367649 3_1:+72663027 None:intergenic
ACTCAATCTTGAGAGAAGTT+TGG 0.367954 3_1:-72663706 Msa0373600:CDS
GCGGAGTCCCTCCTTGGAAT+TGG 0.368477 3_1:-72663635 Msa0373600:CDS
TGGTGGTGGTGTTGCGGCGG+TGG 0.389541 3_1:+72667460 None:intergenic
CTGGCACGTCGGGCTTGGAC+AGG 0.391303 3_1:-72662966 Msa0373600:CDS
TGGTGGTGTTGCGGCGGTGG+TGG 0.399045 3_1:+72667463 None:intergenic
TGGTGTTGCGGCGGTGGTGG+TGG 0.400190 3_1:+72667466 None:intergenic
TAGCATAGCTTACCATTTCC+GGG 0.400255 3_1:+72663603 None:intergenic
TGCAACATCTGCTGCGGCAA+TGG 0.406749 3_1:+72663662 None:intergenic
AGCCATAAAGGAGGCAATTA+GGG 0.407648 3_1:-72663409 Msa0373600:CDS
ATTGACCGTGACATGCCTAT+TGG 0.408632 3_1:-72663321 Msa0373600:CDS
GAAGGGTTATATCAGTCAAA+TGG 0.412587 3_1:-72663473 Msa0373600:CDS
TTCAGCGAAGATGAGAGAAA+AGG 0.415899 3_1:-72667242 Msa0373600:CDS
TCTTCTTTGTAGAAATCGAT+TGG 0.427495 3_1:+72667535 None:intergenic
TGTGCATCAACCGTCGCAAC+AGG 0.428282 3_1:+72662609 None:intergenic
GTAGTAAAGAAAAGGGTAGA+AGG 0.429684 3_1:+72667721 None:intergenic
TCTCATCATTCTCAAATACT+TGG 0.433015 3_1:-72663752 Msa0373600:CDS
GACGAGACACGAAGCCTCAT+TGG 0.438362 3_1:-72667331 Msa0373600:CDS
GGAGCTTTGATCTCCATCTC+AGG 0.439885 3_1:+72667382 None:intergenic
GAAGTCATTCAGCTCATGTC+TGG 0.440565 3_1:-72663971 Msa0373600:CDS
TCTTCACCTTGATGAAGGTT+GGG 0.444179 3_1:-72663289 Msa0373600:CDS
GAAGATTCAACTTTAGAAGT+AGG 0.449628 3_1:+72667034 None:intergenic
TCGTGTCTCGTCTTGAACCC+AGG 0.453965 3_1:+72667342 None:intergenic
GTCATATAGACATACTTTGA+TGG 0.454106 3_1:+72663058 None:intergenic
CTCTTCACCTTGATGAAGGT+TGG 0.454111 3_1:-72663290 Msa0373600:CDS
GTTGTTGTTGAAGGTGGTGG+TGG 0.455795 3_1:+72667446 None:intergenic
TTTGCGGTTGTTGTTGTTGA+AGG 0.456172 3_1:+72667437 None:intergenic
TGGAGAGAAACTCCCGGAAA+TGG 0.457751 3_1:-72663615 Msa0373600:intron
TGGCACTCCGGAAGCCATAA+AGG 0.457915 3_1:-72663421 Msa0373600:CDS
ATCGATTGAAGAAGAGGAAA+GGG 0.460357 3_1:+72667617 None:intergenic
AAGGGTTATATCAGTCAAAT+GGG 0.461970 3_1:-72663472 Msa0373600:CDS
TGAAGAGTGTAATTTCCAAT+AGG 0.462773 3_1:+72663306 None:intergenic
ATTGTAATCGATTGAAGAAG+AGG 0.466383 3_1:+72667611 None:intergenic
TCAGCGAAGATGAGAGAAAA+GGG 0.467180 3_1:-72667241 Msa0373600:CDS
TACACTCTTCACCTTGATGA+AGG 0.469365 3_1:-72663294 Msa0373600:CDS
ATCTTCTCTTCAGTATGCAC+AGG 0.472173 3_1:+72663020 None:intergenic
CATGATCGAGGTGGTGGAAG+TGG 0.472652 3_1:-72667145 Msa0373600:CDS
CAGCAAGCGGAGTCCCTCCT+TGG 0.479134 3_1:-72663641 Msa0373600:CDS
CTTCTTTGTAGAAATCGATT+GGG 0.484762 3_1:+72667536 None:intergenic
TTCAAAGACATACCTTCAAC+GGG 0.487539 3_1:+72665057 None:intergenic
ACAGGTCTAAGAGAATTTGA+TGG 0.489101 3_1:-72662948 Msa0373600:CDS
GTTGTTGTTGTTGAAGGTGG+TGG 0.490511 3_1:+72667443 None:intergenic
TATACCGAGGCGTGAGTTGA+GGG 0.493005 3_1:-72662881 Msa0373600:exon
CATTGGTCTACGACGCGAGA+TGG 0.494860 3_1:-72667314 Msa0373600:CDS
AGAAGCACGCGACATGATGA+TGG 0.494994 3_1:-72667515 Msa0373600:CDS
ACAAGACGGATAGGTATTGA+TGG 0.498257 3_1:-72663441 Msa0373600:CDS
CGGTGGTGGTGGTTGAAGAT+CGG 0.501372 3_1:+72667477 None:intergenic
AGGATCGTCGCCGCTGCTCT+CGG 0.501790 3_1:+72667402 None:intergenic
AAGCATCATGATCGAGGTGG+TGG 0.503110 3_1:-72667151 Msa0373600:CDS
TTGACAATATGGATGATCTT+CGG 0.509969 3_1:-72662914 Msa0373600:CDS
GCGGTTGTTGTTGTTGAAGG+TGG 0.510579 3_1:+72667440 None:intergenic
GCAGCAGATGTTGCAGCAAG+CGG 0.510852 3_1:-72663654 Msa0373600:CDS
GAAGTCGAATAAGCATCTTT+GGG 0.511026 3_1:-72667272 Msa0373600:CDS
AATCTGTCAGCGTGAAGTAA+AGG 0.512619 3_1:+72667765 None:intergenic
ATTATTGTCAATCAATCCAC+TGG 0.513400 3_1:-72662647 Msa0373600:three_prime_UTR
GAGAGAAGTTTGGATCATGA+TGG 0.523270 3_1:-72663696 Msa0373600:CDS
CCTGCCCTCAACTCACGCCT+CGG 0.526894 3_1:+72662877 None:intergenic
TCTATAATAGGAGAATGAAC+AGG 0.531011 3_1:-72662713 Msa0373600:three_prime_UTR
CTTCAAAGACATACCTTCAA+CGG 0.531616 3_1:+72665056 None:intergenic
AAAGTCAGTCTTGCTGTGGA+AGG 0.533418 3_1:-72663491 Msa0373600:CDS
TCATTCAGCTCATGTCTGGC+TGG 0.534726 3_1:-72663967 Msa0373600:intron
GCATCAAATGTCTAGATAAG+TGG 0.536077 3_1:-72662825 Msa0373600:three_prime_UTR
ATATACCGAGGCGTGAGTTG+AGG 0.537639 3_1:-72662882 Msa0373600:exon
GTGAGTTGAGGGCAGGTGCA+TGG 0.538189 3_1:-72662870 Msa0373600:exon
AACGGGTCCAAAAGAAATGT+TGG 0.546852 3_1:+72665074 None:intergenic
TAAAGAAAAGGGTAGAAGGT+GGG 0.549794 3_1:+72667725 None:intergenic
AGAGAAGTTTGGATCATGAT+GGG 0.549925 3_1:-72663695 Msa0373600:CDS
AAAGAAACGCGCGGAAACCT+GGG 0.551251 3_1:-72667359 Msa0373600:CDS
GCTTTACCCACCTGTTGCGA+CGG 0.559112 3_1:-72662619 Msa0373600:three_prime_UTR
TGAAGGTGGTGGTGGTGTTG+CGG 0.562582 3_1:+72667454 None:intergenic
GCATCAACCGTCGCAACAGG+TGG 0.564271 3_1:+72662612 None:intergenic
GAGAATGATGAGAAACATGA+AGG 0.566405 3_1:+72663762 None:intergenic
GGTGGTGGAAGTGGTTCTGG+TGG 0.566673 3_1:-72667136 Msa0373600:CDS
CTTCTCTCAAGATTGAGTGT+TGG 0.567585 3_1:+72663711 None:intergenic
TTGTAGAAATCGATTGGGCG+AGG 0.569863 3_1:+72667541 None:intergenic
GTAAAGAAAAGGGTAGAAGG+TGG 0.569915 3_1:+72667724 None:intergenic
GGAGTTTCTCTCCAATTCCA+AGG 0.571736 3_1:+72663624 None:intergenic
CCGAGGCGTGAGTTGAGGGC+AGG 0.571785 3_1:-72662877 Msa0373600:exon
AATCGATTGAAGAAGAGGAA+AGG 0.574988 3_1:+72667616 None:intergenic
AGGTGGTGGTGGTGTTGCGG+CGG 0.579610 3_1:+72667457 None:intergenic
AAAATCACGGTAATCATCCT+CGG 0.581502 3_1:+72662989 None:intergenic
TTAAGAGAGAGAAGTAAGTG+TGG 0.586827 3_1:-72667079 Msa0373600:CDS
TCGGCGGTGAGAATCATTTG+CGG 0.586996 3_1:+72667421 None:intergenic
ATTCTCACCGCCGAGAGCAG+CGG 0.587631 3_1:-72667412 Msa0373600:CDS
TTTCTCTCCAATTCCAAGGA+GGG 0.589209 3_1:+72663628 None:intergenic
CAGCGGCGACGATCCTGAGA+TGG 0.596039 3_1:-72667395 Msa0373600:CDS
AATATGGATGATCTTCGGCC+TGG 0.596618 3_1:-72662909 Msa0373600:CDS
TCAAATGTCTAGATAAGTGG+AGG 0.597622 3_1:-72662822 Msa0373600:three_prime_UTR
GGTGATTATACAAGACGGAT+AGG 0.598109 3_1:-72663450 Msa0373600:CDS
TGGAATTGGAGAGAAACTCC+CGG 0.599496 3_1:-72663621 Msa0373600:CDS
AAGTCAGTCTTGCTGTGGAA+GGG 0.603947 3_1:-72663490 Msa0373600:CDS
ACTGAGCCCAACCTTCATCA+AGG 0.605750 3_1:+72663283 None:intergenic
GGGGAAAGTCAGTCTTGCTG+TGG 0.620628 3_1:-72663495 Msa0373600:CDS
GATAGGTATTGATGGCACTC+CGG 0.620845 3_1:-72663433 Msa0373600:CDS
CATTTATCAGTACACATAGT+CGG 0.622025 3_1:+72667205 None:intergenic
GTGGTGGAAGTGGTTCTGGT+GGG 0.625269 3_1:-72667135 Msa0373600:CDS
TTTAGTTCTCAACCTAAAAG+CGG 0.625441 3_1:+72663386 None:intergenic
GTGGGTAAAGCACTCTCCAG+TGG 0.626554 3_1:+72662631 None:intergenic
TCTGCTGCGGCAATGGCAAG+AGG 0.628811 3_1:+72663669 None:intergenic
ACGCCTCGGTATATGGCACC+AGG 0.628824 3_1:+72662891 None:intergenic
GCTTGCTGCAACATCTGCTG+CGG 0.629023 3_1:+72663656 None:intergenic
TGGTGGTTGAAGATCGGTGT+TGG 0.640907 3_1:+72667483 None:intergenic
CTATGTGTACTGATAAATGG+AGG 0.647821 3_1:-72667201 Msa0373600:CDS
CCCGACGTGCCAGAAAATCA+CGG 0.651686 3_1:+72662976 None:intergenic
ATCGTCGCCGCTGCTCTCGG+CGG 0.657648 3_1:+72667405 None:intergenic
CGGCCTGGTGCCATATACCG+AGG 0.668670 3_1:-72662894 Msa0373600:CDS
AATTTCCAATAGGCATGTCA+CGG 0.669198 3_1:+72663316 None:intergenic
AATGGGGTGATTATACAAGA+CGG 0.669804 3_1:-72663455 Msa0373600:CDS
CATCAACCGTCGCAACAGGT+GGG 0.670178 3_1:+72662613 None:intergenic
AAAGCGAAGCATCATGATCG+AGG 0.672309 3_1:-72667157 Msa0373600:CDS
CAAATGTCTAGATAAGTGGA+GGG 0.672755 3_1:-72662821 Msa0373600:three_prime_UTR
TCTTCTCTTCAGTATGCACA+GGG 0.678271 3_1:+72663021 None:intergenic
GTTTCTCTCCAATTCCAAGG+AGG 0.688298 3_1:+72663627 None:intergenic
TCTCGCGTCGTAGACCAATG+AGG 0.690034 3_1:+72667317 None:intergenic
CAAAGCTCCAAAGAAACGCG+CGG 0.692450 3_1:-72667368 Msa0373600:CDS
CACTCCGGAAGCCATAAAGG+AGG 0.698747 3_1:-72663418 Msa0373600:CDS
GCGAAGCATCATGATCGAGG+TGG 0.709157 3_1:-72667154 Msa0373600:CDS
AGGGTTATATCAGTCAAATG+GGG 0.717478 3_1:-72663471 Msa0373600:CDS
TGTCAATGCATATTTACACA+AGG 0.721135 3_1:+72662682 None:intergenic
GATAAGTGGAGGGAACTGTG+AGG 0.738634 3_1:-72662811 Msa0373600:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAATAATAAAAGCTTA+AGG + chr3_1:72664880-72664899 None:intergenic 10.0%
!!! AGTATATATATATTTTTTAG+GGG - chr3_1:72665871-72665890 Msa0373600:intron 10.0%
!!! AAATTTTGTAGTAAAGAAAA+GGG + chr3_1:72662670-72662689 None:intergenic 15.0%
!!! AAAATTTTGTAGTAAAGAAA+AGG + chr3_1:72662671-72662690 None:intergenic 15.0%
!! GATAATAATAATAATGTTTG+TGG - chr3_1:72663451-72663470 Msa0373600:CDS 15.0%
!! GAAAAATATGAAATAATCTT+AGG + chr3_1:72665402-72665421 None:intergenic 15.0%
!! AATAATATGTATTCACAAAA+TGG - chr3_1:72665760-72665779 Msa0373600:intron 15.0%
!! ATAATATGTATTCACAAAAT+GGG - chr3_1:72665761-72665780 Msa0373600:intron 15.0%
!! CTATAATATATTAACCTATT+AGG + chr3_1:72665955-72665974 None:intergenic 15.0%
!!! ATTTGAATTTTCATTTCAAT+AGG + chr3_1:72666340-72666359 None:intergenic 15.0%
!!! TTTTAATTAAGATAAACTGA+TGG + chr3_1:72666494-72666513 None:intergenic 15.0%
!!! TTATTTTACTTTTAATGTCT+AGG - chr3_1:72667156-72667175 Msa0373600:CDS 15.0%
!!! GTTTATAATTAGTCTATAAT+AGG - chr3_1:72667656-72667675 Msa0373600:five_prime_UTR 15.0%
!!! TGGATAATTGTTTATGTTTT+TGG - chr3_1:72663497-72663516 Msa0373600:CDS 20.0%
!! TACAAAATATCATGAAATAG+CGG - chr3_1:72663929-72663948 Msa0373600:intron 20.0%
!!! GTTTAAAACTTTTATAACTC+CGG - chr3_1:72664279-72664298 Msa0373600:intron 20.0%
!!! TTTAAAACTTTTATAACTCC+GGG - chr3_1:72664280-72664299 Msa0373600:intron 20.0%
!!! ATAGTTAGGTTTTTAATAGT+CGG + chr3_1:72664549-72664568 None:intergenic 20.0%
!!! ATTTTGTACTAAATAGCATA+TGG + chr3_1:72664753-72664772 None:intergenic 20.0%
!! TACAAAATATTGTCAAATAG+CGG - chr3_1:72664765-72664784 Msa0373600:intron 20.0%
!!! TTTTTCTTTACTCCAAATTT+CGG + chr3_1:72664917-72664936 None:intergenic 20.0%
!! ATTACCAATTCACTTAAATT+CGG + chr3_1:72665166-72665185 None:intergenic 20.0%
!! AGAACATATATATAACAATC+TGG - chr3_1:72666089-72666108 Msa0373600:intron 20.0%
!!! CAATTCTTTTTATCGTTATA+TGG + chr3_1:72666288-72666307 None:intergenic 20.0%
!! CATATAACGATAAAAAGAAT+TGG - chr3_1:72666286-72666305 Msa0373600:intron 20.0%
!! TTAAAGGATTTAGATATATG+TGG - chr3_1:72666549-72666568 Msa0373600:intron 20.0%
!! TAAAGGATTTAGATATATGT+GGG - chr3_1:72666550-72666569 Msa0373600:intron 20.0%
!!! TCATTTTTTTCTTCTTCTTT+AGG - chr3_1:72666815-72666834 Msa0373600:intron 20.0%
!! AACAATATATTATCATTTGC+AGG - chr3_1:72667295-72667314 Msa0373600:CDS 20.0%
!! TTATAGGAATATTGACAATA+TGG - chr3_1:72667456-72667475 Msa0373600:CDS 20.0%
!! TGATAAATACATTTTTGCTG+CGG + chr3_1:72662811-72662830 None:intergenic 25.0%
! TCTTACATGCAATTTGATAA+AGG - chr3_1:72663368-72663387 Msa0373600:CDS 25.0%
!!! ATTTGATTTGATGCTATGTT+TGG - chr3_1:72663477-72663496 Msa0373600:CDS 25.0%
!!! TTCTTTTGTAAAAAGTGCAT+TGG + chr3_1:72663786-72663805 None:intergenic 25.0%
! CTTAAACGATAATAATACTG+CGG - chr3_1:72663843-72663862 Msa0373600:intron 25.0%
! TTGTACTAAATACTCTATTG+TGG + chr3_1:72663914-72663933 None:intergenic 25.0%
!!! AAGTGAATCTTTTAGAATGT+CGG - chr3_1:72664039-72664058 Msa0373600:intron 25.0%
!! TTAAAACTTTTATAACTCCG+GGG - chr3_1:72664281-72664300 Msa0373600:intron 25.0%
!!! GGTATCTTTTTCAAACATTA+TGG - chr3_1:72664465-72664484 Msa0373600:intron 25.0%
! ACATTATGGCTTGAAATATT+AGG - chr3_1:72664479-72664498 Msa0373600:intron 25.0%
!! TAGTTAGGTTTTTAATAGTC+GGG + chr3_1:72664548-72664567 None:intergenic 25.0%
! CAGTTACAAAAAGAATAGTT+AGG + chr3_1:72664563-72664582 None:intergenic 25.0%
! TTTGGAAAATGTAGTTGATT+AGG + chr3_1:72664586-72664605 None:intergenic 25.0%
!!! GCTATTTTACATGTTTGTAT+CGG - chr3_1:72664651-72664670 Msa0373600:intron 25.0%
! TATAAATCACTGCAATTTGA+AGG - chr3_1:72665099-72665118 Msa0373600:intron 25.0%
! ATTGTTCCTAAAGACAAAAT+GGG + chr3_1:72665248-72665267 None:intergenic 25.0%
! AATTGTTCCTAAAGACAAAA+TGG + chr3_1:72665249-72665268 None:intergenic 25.0%
! ATGGAATGTTTACAAGAAAA+AGG + chr3_1:72666269-72666288 None:intergenic 25.0%
!! CACATATTGAAATGTTACTT+TGG - chr3_1:72666310-72666329 Msa0373600:intron 25.0%
!! TTGTTTAAAGTTCATGTACT+GGG - chr3_1:72667189-72667208 Msa0373600:CDS 25.0%
! TATATTATCATTTGCAGGAA+TGG - chr3_1:72667300-72667319 Msa0373600:CDS 25.0%
!! TAAGAGAATTTGATGGTTAT+AGG - chr3_1:72667440-72667459 Msa0373600:CDS 25.0%
! AACTAAACAAATACAGTTTC+AGG + chr3_1:72667626-72667645 None:intergenic 25.0%
ATTGTAATCGATTGAAGAAG+AGG + chr3_1:72662773-72662792 None:intergenic 30.0%
CTTCTTTGTAGAAATCGATT+GGG + chr3_1:72662848-72662867 None:intergenic 30.0%
TCTTCTTTGTAGAAATCGAT+TGG + chr3_1:72662849-72662868 None:intergenic 30.0%
CATTTATCAGTACACATAGT+CGG + chr3_1:72663179-72663198 None:intergenic 30.0%
! GAAGATTCAACTTTAGAAGT+AGG + chr3_1:72663350-72663369 None:intergenic 30.0%
CACTATAATTCGAAACAAAC+AGG + chr3_1:72663740-72663759 None:intergenic 30.0%
CTGTTTGTTTCGAATTATAG+TGG - chr3_1:72663738-72663757 Msa0373600:CDS 30.0%
GCTATAACATAATTGCATAG+TGG - chr3_1:72663954-72663973 Msa0373600:intron 30.0%
! AAAGTGATTTGTGAATACTC+TGG - chr3_1:72664129-72664148 Msa0373600:intron 30.0%
! AAGTGATTTGTGAATACTCT+GGG - chr3_1:72664130-72664149 Msa0373600:intron 30.0%
!!! TGTGACTTTTGAGGTAATAA+TGG - chr3_1:72664213-72664232 Msa0373600:intron 30.0%
!!! AAAGTTTTAAACACCATCAC+TGG + chr3_1:72664271-72664290 None:intergenic 30.0%
! AAGTGTTGTCAATAACAAGT+TGG + chr3_1:72664321-72664340 None:intergenic 30.0%
! TCTTTTTGGACCAAATTTGT+TGG + chr3_1:72664434-72664453 None:intergenic 30.0%
ACAAATTTGGTCCAAAAAGA+AGG - chr3_1:72664434-72664453 Msa0373600:intron 30.0%
CAAATTTGGTCCAAAAAGAA+GGG - chr3_1:72664435-72664454 Msa0373600:intron 30.0%
ACTTCATAATACAAGAAGCA+CGG + chr3_1:72664505-72664524 None:intergenic 30.0%
AAAATTCCACTACGTTATAG+TGG + chr3_1:72664709-72664728 None:intergenic 30.0%
!! ACTATAACGTAGTGGAATTT+TGG - chr3_1:72664708-72664727 Msa0373600:intron 30.0%
TTGTACTAAATAGCATATGG+TGG + chr3_1:72664750-72664769 None:intergenic 30.0%
TTCTTTGTGAAACCGAAATT+TGG - chr3_1:72664902-72664921 Msa0373600:intron 30.0%
!! GTAAAGAAAAAGCATTGAGT+TGG - chr3_1:72664926-72664945 Msa0373600:intron 30.0%
GACCTGATATCAATTGATAT+GGG + chr3_1:72665029-72665048 None:intergenic 30.0%
AGACCTGATATCAATTGATA+TGG + chr3_1:72665030-72665049 None:intergenic 30.0%
CAAACCGAATTTAAGTGAAT+TGG - chr3_1:72665159-72665178 Msa0373600:intron 30.0%
TTTCAGCTCATAAATCATGT+AGG - chr3_1:72665418-72665437 Msa0373600:intron 30.0%
! CTTGATTAGTTGATTCCATA+TGG - chr3_1:72665443-72665462 Msa0373600:intron 30.0%
! ATTTTCCAATACAGCAATCT+AGG + chr3_1:72665489-72665508 None:intergenic 30.0%
AAGAAAAAGGAACAGCAAAA+GGG + chr3_1:72666256-72666275 None:intergenic 30.0%
TCTGGTTATTGCAATTTACT+AGG - chr3_1:72666388-72666407 Msa0373600:intron 30.0%
AATGTCCAGTAGTAGTATTT+AGG - chr3_1:72666512-72666531 Msa0373600:intron 30.0%
ATGTCCAGTAGTAGTATTTA+GGG - chr3_1:72666513-72666532 Msa0373600:intron 30.0%
! ACATGAAGGAACTTTTACTT+TGG + chr3_1:72666608-72666627 None:intergenic 30.0%
TCTCATCATTCTCAAATACT+TGG - chr3_1:72666629-72666648 Msa0373600:intron 30.0%
!! TGCTTTCTTATTTCTGATAC+TGG - chr3_1:72666843-72666862 Msa0373600:intron 30.0%
!! GATACTGGTTCTTACTATTA+TGG - chr3_1:72666858-72666877 Msa0373600:intron 30.0%
AAGGGTTATATCAGTCAAAT+GGG - chr3_1:72666909-72666928 Msa0373600:intron 30.0%
!! TTTAGTTCTCAACCTAAAAG+CGG + chr3_1:72666998-72667017 None:intergenic 30.0%
! TGAAGAGTGTAATTTCCAAT+AGG + chr3_1:72667078-72667097 None:intergenic 30.0%
! GTTGTTTAAAGTTCATGTAC+TGG - chr3_1:72667188-72667207 Msa0373600:CDS 30.0%
TATTGTTACGTCAACAGAAA+CGG + chr3_1:72667282-72667301 None:intergenic 30.0%
GTCATATAGACATACTTTGA+TGG + chr3_1:72667326-72667345 None:intergenic 30.0%
! AGAGAAGATATTTTATACCG+AGG - chr3_1:72667375-72667394 Msa0373600:CDS 30.0%
TTGACAATATGGATGATCTT+CGG - chr3_1:72667467-72667486 Msa0373600:CDS 30.0%
TCTATAATAGGAGAATGAAC+AGG - chr3_1:72667668-72667687 Msa0373600:five_prime_UTR 30.0%
TGTCAATGCATATTTACACA+AGG + chr3_1:72667702-72667721 None:intergenic 30.0%
ATTATTGTCAATCAATCCAC+TGG - chr3_1:72667734-72667753 Msa0373600:five_prime_UTR 30.0%
TAAAGAAAAGGGTAGAAGGT+GGG + chr3_1:72662659-72662678 None:intergenic 35.0%
GTAGTAAAGAAAAGGGTAGA+AGG + chr3_1:72662663-72662682 None:intergenic 35.0%
ATCGATTGAAGAAGAGGAAA+GGG + chr3_1:72662767-72662786 None:intergenic 35.0%
AATCGATTGAAGAAGAGGAA+AGG + chr3_1:72662768-72662787 None:intergenic 35.0%
GAAGTCGAATAAGCATCTTT+GGG - chr3_1:72663109-72663128 Msa0373600:intron 35.0%
!! TGAGAGAAAAGGGTTTTGAT+CGG - chr3_1:72663150-72663169 Msa0373600:intron 35.0%
! CGACTATGTGTACTGATAAA+TGG - chr3_1:72663177-72663196 Msa0373600:intron 35.0%
! CTATGTGTACTGATAAATGG+AGG - chr3_1:72663180-72663199 Msa0373600:intron 35.0%
TTAAGAGAGAGAAGTAAGTG+TGG - chr3_1:72663302-72663321 Msa0373600:CDS 35.0%
TCACAAGTGTGTGTTTATGT+AGG - chr3_1:72663668-72663687 Msa0373600:CDS 35.0%
GTGTGGTGTGAAATAAAATC+CGG - chr3_1:72663700-72663719 Msa0373600:CDS 35.0%
! TTGCATAGTGGAATTTGAAC+AGG - chr3_1:72663966-72663985 Msa0373600:intron 35.0%
TTGCCACATTAGTCCTTAAT+GGG + chr3_1:72664087-72664106 None:intergenic 35.0%
TTTGCCACATTAGTCCTTAA+TGG + chr3_1:72664088-72664107 None:intergenic 35.0%
GACTAATGTGGCAAATACAT+GGG - chr3_1:72664093-72664112 Msa0373600:intron 35.0%
ACTAATGTGGCAAATACATG+GGG - chr3_1:72664094-72664113 Msa0373600:intron 35.0%
! GCAAATACATGGGGTTTTTA+TGG - chr3_1:72664103-72664122 Msa0373600:intron 35.0%
! CGTAAAGAATGTGACTTTTG+AGG - chr3_1:72664204-72664223 Msa0373600:intron 35.0%
! TATTGACAACACTTGACTTG+TGG - chr3_1:72664327-72664346 Msa0373600:intron 35.0%
TTGGTTGAATGCTAACTCTT+TGG + chr3_1:72664409-72664428 None:intergenic 35.0%
TCAACCAAGTCCAACAAATT+TGG - chr3_1:72664421-72664440 Msa0373600:intron 35.0%
GTGCTTCTTGTATTATGAAG+TGG - chr3_1:72664504-72664523 Msa0373600:intron 35.0%
! TTGACAAATAGCAGCTTTAG+CGG - chr3_1:72664676-72664695 Msa0373600:intron 35.0%
CACTACGTTATAGTGGTATA+GGG + chr3_1:72664702-72664721 None:intergenic 35.0%
! AATAGCATATGGTGGAACAA+TGG + chr3_1:72664742-72664761 None:intergenic 35.0%
AGCCCATATCAATTGATATC+AGG - chr3_1:72665024-72665043 Msa0373600:intron 35.0%
! TTCGGTTTGATGATTCAAGA+GGG + chr3_1:72665148-72665167 None:intergenic 35.0%
! ATTCGGTTTGATGATTCAAG+AGG + chr3_1:72665149-72665168 None:intergenic 35.0%
! ATTTCGCCCATTTTGTCTTT+AGG - chr3_1:72665239-72665258 Msa0373600:intron 35.0%
! GATGATGCCAACATTTCTTT+TGG - chr3_1:72665300-72665319 Msa0373600:intron 35.0%
TTCAAAGACATACCTTCAAC+GGG + chr3_1:72665327-72665346 None:intergenic 35.0%
CTTCAAAGACATACCTTCAA+CGG + chr3_1:72665328-72665347 None:intergenic 35.0%
AGGATTAGAACCAAACCAAA+TGG + chr3_1:72665469-72665488 None:intergenic 35.0%
CTAATCCTAGATTGCTGTAT+TGG - chr3_1:72665481-72665500 Msa0373600:intron 35.0%
ACTTTGACCAGTATTCAACT+TGG + chr3_1:72665565-72665584 None:intergenic 35.0%
TAACCTATTAGGTCCAATCT+CGG + chr3_1:72665944-72665963 None:intergenic 35.0%
TATGTTCATTAACAGTGCAC+TGG - chr3_1:72666061-72666080 Msa0373600:intron 35.0%
TGGCAGAGATTTGATCTAAT+AGG - chr3_1:72666109-72666128 Msa0373600:intron 35.0%
GTGAATTTAACTGCTACCAT+AGG - chr3_1:72666220-72666239 Msa0373600:intron 35.0%
CAAGAAAAAGGAACAGCAAA+AGG + chr3_1:72666257-72666276 None:intergenic 35.0%
TCCTACAGATTACACTAGTA+CGG + chr3_1:72666364-72666383 None:intergenic 35.0%
TGTAATCTGTAGGAATGTTC+TGG - chr3_1:72666370-72666389 Msa0373600:intron 35.0%
CAGTAGTAGTATTTAGGGAA+GGG - chr3_1:72666518-72666537 Msa0373600:intron 35.0%
AGTAGTAGTATTTAGGGAAG+GGG - chr3_1:72666519-72666538 Msa0373600:intron 35.0%
!! GGGATATCGTTTTGATGTTT+AGG - chr3_1:72666570-72666589 Msa0373600:intron 35.0%
GAGAATGATGAGAAACATGA+AGG + chr3_1:72666622-72666641 None:intergenic 35.0%
! AATACTTGGCAATTAGCTTC+TGG - chr3_1:72666643-72666662 Msa0373600:intron 35.0%
ACTCAATCTTGAGAGAAGTT+TGG - chr3_1:72666675-72666694 Msa0373600:intron 35.0%
AGAGAAGTTTGGATCATGAT+GGG - chr3_1:72666686-72666705 Msa0373600:intron 35.0%
ATAGCATAGCTTACCATTTC+CGG + chr3_1:72666782-72666801 None:intergenic 35.0%
TGGTAAGCTATGCTATGTAA+AGG - chr3_1:72666786-72666805 Msa0373600:intron 35.0%
TTCTTACTATTATGGCAGGT+GGG - chr3_1:72666866-72666885 Msa0373600:intron 35.0%
GAAGGGTTATATCAGTCAAA+TGG - chr3_1:72666908-72666927 Msa0373600:intron 35.0%
AGGGTTATATCAGTCAAATG+GGG - chr3_1:72666910-72666929 Msa0373600:intron 35.0%
AATGGGGTGATTATACAAGA+CGG - chr3_1:72666926-72666945 Msa0373600:intron 35.0%
! TGAGAACTAAACGTGCATTT+TGG - chr3_1:72667007-72667026 Msa0373600:intron 35.0%
!! AACTAAACGTGCATTTTGGT+TGG - chr3_1:72667011-72667030 Msa0373600:intron 35.0%
AATTTCCAATAGGCATGTCA+CGG + chr3_1:72667068-72667087 None:intergenic 35.0%
! GCTAACTTGTGCAAATTTCA+TGG - chr3_1:72667132-72667151 Msa0373600:CDS 35.0%
TTTGTTGACCCCTTACATTT+AGG - chr3_1:72667219-72667238 Msa0373600:CDS 35.0%
TTGTTGACCCCTTACATTTA+GGG - chr3_1:72667220-72667239 Msa0373600:CDS 35.0%
AGTGTATGCCCTAAATGTAA+GGG + chr3_1:72667231-72667250 None:intergenic 35.0%
AAAATCACGGTAATCATCCT+CGG + chr3_1:72667395-72667414 None:intergenic 35.0%
ACAGGTCTAAGAGAATTTGA+TGG - chr3_1:72667433-72667452 Msa0373600:CDS 35.0%
GCATCAAATGTCTAGATAAG+TGG - chr3_1:72667556-72667575 Msa0373600:CDS 35.0%
TCAAATGTCTAGATAAGTGG+AGG - chr3_1:72667559-72667578 Msa0373600:CDS 35.0%
CAAATGTCTAGATAAGTGGA+GGG - chr3_1:72667560-72667579 Msa0373600:CDS 35.0%
AATCTGTCAGCGTGAAGTAA+AGG + chr3_1:72662619-72662638 None:intergenic 40.0%
GTAAAGAAAAGGGTAGAAGG+TGG + chr3_1:72662660-72662679 None:intergenic 40.0%
! TTTGCGGTTGTTGTTGTTGA+AGG + chr3_1:72662947-72662966 None:intergenic 40.0%
CGAAGTCGAATAAGCATCTT+TGG - chr3_1:72663108-72663127 Msa0373600:intron 40.0%
TTCAGCGAAGATGAGAGAAA+AGG - chr3_1:72663139-72663158 Msa0373600:intron 40.0%
TCAGCGAAGATGAGAGAAAA+GGG - chr3_1:72663140-72663159 Msa0373600:intron 40.0%
!! CGATTTTAGGGACAAATCTG+GGG + chr3_1:72663636-72663655 None:intergenic 40.0%
!! CCGATTTTAGGGACAAATCT+GGG + chr3_1:72663637-72663656 None:intergenic 40.0%
CCCAGATTTGTCCCTAAAAT+CGG - chr3_1:72663634-72663653 Msa0373600:CDS 40.0%
!! ACCGATTTTAGGGACAAATC+TGG + chr3_1:72663638-72663657 None:intergenic 40.0%
AGATTTGTCCCTAAAATCGG+TGG - chr3_1:72663637-72663656 Msa0373600:CDS 40.0%
TATGTAGGCTTTCAAACGTG+TGG - chr3_1:72663683-72663702 Msa0373600:CDS 40.0%
TGGTGTGAAATAAAATCCGG+AGG - chr3_1:72663703-72663722 Msa0373600:CDS 40.0%
GGTGTGAAATAAAATCCGGA+GGG - chr3_1:72663704-72663723 Msa0373600:CDS 40.0%
! CGAATTATAGTGGAAGCATG+CGG - chr3_1:72663748-72663767 Msa0373600:CDS 40.0%
TTCATATCCTGCTACGCAAA+AGG + chr3_1:72663876-72663895 None:intergenic 40.0%
! TTGATAGCACTTGCACAAAC+AGG - chr3_1:72664012-72664031 Msa0373600:intron 40.0%
TGATAGCACTTGCACAAACA+GGG - chr3_1:72664013-72664032 Msa0373600:intron 40.0%
GGACTAATGTGGCAAATACA+TGG - chr3_1:72664092-72664111 Msa0373600:intron 40.0%
! TGGATTTAAGTTTGATGCCC+CGG + chr3_1:72664301-72664320 None:intergenic 40.0%
!! TGGACCAAATTTGTTGGACT+TGG + chr3_1:72664428-72664447 None:intergenic 40.0%
TCCAAAAAGAAGGGCTGATT+TGG - chr3_1:72664444-72664463 Msa0373600:intron 40.0%
! ACCAAATCAGCCCTTCTTTT+TGG + chr3_1:72664448-72664467 None:intergenic 40.0%
!! GGACTGGATTTGTTGGAATT+TGG + chr3_1:72664604-72664623 None:intergenic 40.0%
! AACCAAGATGCACACCTTTT+GGG + chr3_1:72664625-72664644 None:intergenic 40.0%
! TAACCAAGATGCACACCTTT+TGG + chr3_1:72664626-72664645 None:intergenic 40.0%
CCACTACGTTATAGTGGTAT+AGG + chr3_1:72664703-72664722 None:intergenic 40.0%
CCTATACCACTATAACGTAG+TGG - chr3_1:72664700-72664719 Msa0373600:intron 40.0%
TTGTCAAATAGCGGCTATAG+TGG - chr3_1:72664774-72664793 Msa0373600:intron 40.0%
ATGTTGTCTATTGCAGAGAG+TGG + chr3_1:72664846-72664865 None:intergenic 40.0%
CTCTCTGCAATAGACAACAT+TGG - chr3_1:72664846-72664865 Msa0373600:intron 40.0%
!! GAGTTGGCTTGTATAGCTTT+AGG - chr3_1:72664942-72664961 Msa0373600:intron 40.0%
!! ATAGCTTTAGGAAGTTCGCT+TGG - chr3_1:72664954-72664973 Msa0373600:intron 40.0%
! ATGGGCTGAGTATCTACTAA+GGG + chr3_1:72665011-72665030 None:intergenic 40.0%
! TATGGGCTGAGTATCTACTA+AGG + chr3_1:72665012-72665031 None:intergenic 40.0%
ACTGCAATTTGAAGGTTCTC+AGG - chr3_1:72665107-72665126 Msa0373600:intron 40.0%
CTGCAATTTGAAGGTTCTCA+GGG - chr3_1:72665108-72665127 Msa0373600:intron 40.0%
TGCAATTTGAAGGTTCTCAG+GGG - chr3_1:72665109-72665128 Msa0373600:intron 40.0%
! GTTTGATGATTCAAGAGGGT+AGG + chr3_1:72665144-72665163 None:intergenic 40.0%
ATGACTCAGAACAGCAACTA+GGG + chr3_1:72665193-72665212 None:intergenic 40.0%
! CTGTTCTGAGTCATGACATT+TGG - chr3_1:72665199-72665218 Msa0373600:intron 40.0%
GACTTATTATGTTGCTGTGC+AGG - chr3_1:72665273-72665292 Msa0373600:intron 40.0%
AACGGGTCCAAAAGAAATGT+TGG + chr3_1:72665310-72665329 None:intergenic 40.0%
! ATTTCTTTTGGACCCGTTGA+AGG - chr3_1:72665312-72665331 Msa0373600:intron 40.0%
! GTTGATTCCATATGGCCATT+TGG - chr3_1:72665451-72665470 Msa0373600:intron 40.0%
TTCCATATGGCCATTTGGTT+TGG - chr3_1:72665456-72665475 Msa0373600:intron 40.0%
AACCAAACCAAATGGCCATA+TGG + chr3_1:72665461-72665480 None:intergenic 40.0%
! TTCAACTTGGCTAGGGTATT+AGG + chr3_1:72665552-72665571 None:intergenic 40.0%
ACCAGTATTCAACTTGGCTA+GGG + chr3_1:72665559-72665578 None:intergenic 40.0%
TATAGCAATCTAGCCGAGAT+TGG - chr3_1:72665928-72665947 Msa0373600:intron 40.0%
! ATCTAATAGGTTGACCACAC+AGG - chr3_1:72666122-72666141 Msa0373600:intron 40.0%
! CGATTGGTTCAACCATAAAC+CGG + chr3_1:72666156-72666175 None:intergenic 40.0%
CGGTTTATGGTTGAACCAAT+CGG - chr3_1:72666154-72666173 Msa0373600:intron 40.0%
CCTTCCCTAAATACTACTAC+TGG + chr3_1:72666520-72666539 None:intergenic 40.0%
CCAGTAGTAGTATTTAGGGA+AGG - chr3_1:72666517-72666536 Msa0373600:intron 40.0%
GTAGTAGTATTTAGGGAAGG+GGG - chr3_1:72666520-72666539 Msa0373600:intron 40.0%
CTTCTCTCAAGATTGAGTGT+TGG + chr3_1:72666673-72666692 None:intergenic 40.0%
GAGAGAAGTTTGGATCATGA+TGG - chr3_1:72666685-72666704 Msa0373600:intron 40.0%
TTTCTCTCCAATTCCAAGGA+GGG + chr3_1:72666756-72666775 None:intergenic 40.0%
TAGCATAGCTTACCATTTCC+GGG + chr3_1:72666781-72666800 None:intergenic 40.0%
AGCTATGCTATGTAAAGGAC+TGG - chr3_1:72666791-72666810 Msa0373600:intron 40.0%
! CTGGTTCTTACTATTATGGC+AGG - chr3_1:72666862-72666881 Msa0373600:intron 40.0%
GTTCTTACTATTATGGCAGG+TGG - chr3_1:72666865-72666884 Msa0373600:intron 40.0%
TCTTACTATTATGGCAGGTG+GGG - chr3_1:72666867-72666886 Msa0373600:intron 40.0%
GGTGATTATACAAGACGGAT+AGG - chr3_1:72666931-72666950 Msa0373600:intron 40.0%
!! ACAAGACGGATAGGTATTGA+TGG - chr3_1:72666940-72666959 Msa0373600:intron 40.0%
AAGCCATAAAGGAGGCAATT+AGG - chr3_1:72666971-72666990 Msa0373600:intron 40.0%
AGCCATAAAGGAGGCAATTA+GGG - chr3_1:72666972-72666991 Msa0373600:intron 40.0%
!!! TAAACGTGCATTTTGGTTGG+AGG - chr3_1:72667014-72667033 Msa0373600:CDS 40.0%
TACACTCTTCACCTTGATGA+AGG - chr3_1:72667087-72667106 Msa0373600:CDS 40.0%
TCTTCACCTTGATGAAGGTT+GGG - chr3_1:72667092-72667111 Msa0373600:CDS 40.0%
GTGTATGCCCTAAATGTAAG+GGG + chr3_1:72667230-72667249 None:intergenic 40.0%
CAGTGTATGCCCTAAATGTA+AGG + chr3_1:72667232-72667251 None:intergenic 40.0%
CAGAAACGGTGCACAAAATA+CGG + chr3_1:72667268-72667287 None:intergenic 40.0%
TCTTCTCTTCAGTATGCACA+GGG + chr3_1:72667363-72667382 None:intergenic 40.0%
ATCTTCTCTTCAGTATGCAC+AGG + chr3_1:72667364-72667383 None:intergenic 40.0%
! GGATGATTACCGTGATTTTC+TGG - chr3_1:72667396-72667415 Msa0373600:CDS 40.0%
!! AAGGGTAGAAGGTGGGTTTT+GGG + chr3_1:72662652-72662671 None:intergenic 45.0%
!! AAAGGGTAGAAGGTGGGTTT+TGG + chr3_1:72662653-72662672 None:intergenic 45.0%
TTGTAGAAATCGATTGGGCG+AGG + chr3_1:72662843-72662862 None:intergenic 45.0%
! GTTGTTGTTGTTGAAGGTGG+TGG + chr3_1:72662941-72662960 None:intergenic 45.0%
! AAAGCGAAGCATCATGATCG+AGG - chr3_1:72663224-72663243 Msa0373600:intron 45.0%
!!! CTTGTCTGCCACCGATTTTA+GGG + chr3_1:72663648-72663667 None:intergenic 45.0%
!!! ACTTGTCTGCCACCGATTTT+AGG + chr3_1:72663649-72663668 None:intergenic 45.0%
! CTATCAACCTTTTGCGTAGC+AGG - chr3_1:72663866-72663885 Msa0373600:intron 45.0%
TGTGCAAGTGCTATCAACTG+CGG + chr3_1:72664009-72664028 None:intergenic 45.0%
!! TTGCTGTAGTGGACCCATTA+AGG - chr3_1:72664071-72664090 Msa0373600:intron 45.0%
GGACCCATTAAGGACTAATG+TGG - chr3_1:72664081-72664100 Msa0373600:intron 45.0%
GTACAATGCATGTCCAGTGA+TGG - chr3_1:72664255-72664274 Msa0373600:intron 45.0%
!!! CCTTTTGGGACTGGATTTGT+TGG + chr3_1:72664611-72664630 None:intergenic 45.0%
CCAACAAATCCAGTCCCAAA+AGG - chr3_1:72664608-72664627 Msa0373600:intron 45.0%
! AGCATATGGTGGAACAATGG+TGG + chr3_1:72664739-72664758 None:intergenic 45.0%
GCTATAGCACTATTGCACAG+AGG - chr3_1:72664798-72664817 Msa0373600:intron 45.0%
TTGCAGAGAGTGGAGAATAG+CGG + chr3_1:72664836-72664855 None:intergenic 45.0%
GCAATTTGAAGGTTCTCAGG+GGG - chr3_1:72665110-72665129 Msa0373600:intron 45.0%
CAATTTGAAGGTTCTCAGGG+GGG - chr3_1:72665111-72665130 Msa0373600:intron 45.0%
AATTTGAAGGTTCTCAGGGG+GGG - chr3_1:72665112-72665131 Msa0373600:intron 45.0%
CATGACTCAGAACAGCAACT+AGG + chr3_1:72665194-72665213 None:intergenic 45.0%
GTATTAGGTTAGTGAGTCGC+TGG + chr3_1:72665537-72665556 None:intergenic 45.0%
! ACCCTAGCCAAGTTGAATAC+TGG - chr3_1:72665555-72665574 Msa0373600:intron 45.0%
GACCAGTATTCAACTTGGCT+AGG + chr3_1:72665560-72665579 None:intergenic 45.0%
TAGCCGAGATTGGACCTAAT+AGG - chr3_1:72665938-72665957 Msa0373600:intron 45.0%
TATGGTTGAACCAATCGGAC+CGG - chr3_1:72666159-72666178 Msa0373600:intron 45.0%
GTGCGTCTAGAAAATGAGAC+AGG + chr3_1:72666190-72666209 None:intergenic 45.0%
AAAGGGTAACAGGTCACCTA+TGG + chr3_1:72666239-72666258 None:intergenic 45.0%
AGGAACAGCAAAAGGGTAAC+AGG + chr3_1:72666249-72666268 None:intergenic 45.0%
GCCGTACTAGTGTAATCTGT+AGG - chr3_1:72666360-72666379 Msa0373600:intron 45.0%
GAAGTCATTCAGCTCATGTC+TGG - chr3_1:72666410-72666429 Msa0373600:intron 45.0%
GGGAAGGGGGTTGTATTTAA+AGG - chr3_1:72666533-72666552 Msa0373600:intron 45.0%
GTTTCTCTCCAATTCCAAGG+AGG + chr3_1:72666757-72666776 None:intergenic 45.0%
GGAGTTTCTCTCCAATTCCA+AGG + chr3_1:72666760-72666779 None:intergenic 45.0%
TGGAATTGGAGAGAAACTCC+CGG - chr3_1:72666760-72666779 Msa0373600:intron 45.0%
! AAAGTCAGTCTTGCTGTGGA+AGG - chr3_1:72666890-72666909 Msa0373600:intron 45.0%
! AAGTCAGTCTTGCTGTGGAA+GGG - chr3_1:72666891-72666910 Msa0373600:intron 45.0%
!! GATAGGTATTGATGGCACTC+CGG - chr3_1:72666948-72666967 Msa0373600:intron 45.0%
ATTGCCTCCTTTATGGCTTC+CGG + chr3_1:72666970-72666989 None:intergenic 45.0%
!!! TGCATTTTGGTTGGAGGATG+AGG - chr3_1:72667020-72667039 Msa0373600:CDS 45.0%
ATTGACCGTGACATGCCTAT+TGG - chr3_1:72667060-72667079 Msa0373600:CDS 45.0%
CTCTTCACCTTGATGAAGGT+TGG - chr3_1:72667091-72667110 Msa0373600:CDS 45.0%
ACGGTGCACAAAATACGGTT+TGG + chr3_1:72667263-72667282 None:intergenic 45.0%
CTTCAGTATGCACAGGGATA+TGG + chr3_1:72667357-72667376 None:intergenic 45.0%
AATATGGATGATCTTCGGCC+TGG - chr3_1:72667472-72667491 Msa0373600:CDS 45.0%
!!! AAAGTATATATATATTTTTT+AGG - chr3_1:72665869-72665888 Msa0373600:intron 5.0%
!!! AAGTATATATATATTTTTTA+GGG - chr3_1:72665870-72665889 Msa0373600:intron 5.0%
! AGAAGCACGCGACATGATGA+TGG - chr3_1:72662866-72662885 Msa0373600:exon 50.0%
TGGTGGTTGAAGATCGGTGT+TGG + chr3_1:72662901-72662920 None:intergenic 50.0%
! GTTGTTGTTGAAGGTGGTGG+TGG + chr3_1:72662938-72662957 None:intergenic 50.0%
! GCGGTTGTTGTTGTTGAAGG+TGG + chr3_1:72662944-72662963 None:intergenic 50.0%
TCGGCGGTGAGAATCATTTG+CGG + chr3_1:72662963-72662982 None:intergenic 50.0%
! GGAGCTTTGATCTCCATCTC+AGG + chr3_1:72663002-72663021 None:intergenic 50.0%
CAAAGCTCCAAAGAAACGCG+CGG - chr3_1:72663013-72663032 Msa0373600:CDS 50.0%
AAAGAAACGCGCGGAAACCT+GGG - chr3_1:72663022-72663041 Msa0373600:CDS 50.0%
AAGCATCATGATCGAGGTGG+TGG - chr3_1:72663230-72663249 Msa0373600:intron 50.0%
AGTGGAATTTGAACAGGCCG+CGG - chr3_1:72663972-72663991 Msa0373600:CDS 50.0%
GTGCTATCAACTGCGGATCA+CGG + chr3_1:72664002-72664021 None:intergenic 50.0%
GGTCACACTAGTTGCTGTAG+TGG - chr3_1:72664060-72664079 Msa0373600:intron 50.0%
!!! AGATGCACACCTTTTGGGAC+TGG + chr3_1:72664620-72664639 None:intergenic 50.0%
! GTCCCAAAAGGTGTGCATCT+TGG - chr3_1:72664620-72664639 Msa0373600:intron 50.0%
TCAACCATAAACCGGACCGA+AGG + chr3_1:72666148-72666167 None:intergenic 50.0%
GAAAATGAGACAGGACCAGC+CGG + chr3_1:72666181-72666200 None:intergenic 50.0%
TCATTCAGCTCATGTCTGGC+TGG - chr3_1:72666414-72666433 Msa0373600:intron 50.0%
TGGAGAGAAACTCCCGGAAA+TGG - chr3_1:72666766-72666785 Msa0373600:intron 50.0%
GGCCCTAATTGCCTCCTTTA+TGG + chr3_1:72666977-72666996 None:intergenic 50.0%
!!! AGGCAATTAGGGCCGCTTTT+AGG - chr3_1:72666983-72667002 Msa0373600:intron 50.0%
ACTGAGCCCAACCTTCATCA+AGG + chr3_1:72667101-72667120 None:intergenic 50.0%
!! ACCGTGATTTTCTGGCACGT+CGG - chr3_1:72667404-72667423 Msa0373600:CDS 50.0%
TCAACTCACGCCTCGGTATA+TGG + chr3_1:72667500-72667519 None:intergenic 50.0%
ATATACCGAGGCGTGAGTTG+AGG - chr3_1:72667499-72667518 Msa0373600:CDS 50.0%
! TATACCGAGGCGTGAGTTGA+GGG - chr3_1:72667500-72667519 Msa0373600:CDS 50.0%
GATAAGTGGAGGGAACTGTG+AGG - chr3_1:72667570-72667589 Msa0373600:exon 50.0%
!! CGGTGGTGGTGGTTGAAGAT+CGG + chr3_1:72662907-72662926 None:intergenic 55.0%
!! TGAAGGTGGTGGTGGTGTTG+CGG + chr3_1:72662930-72662949 None:intergenic 55.0%
CAGGTTTCCGCGCGTTTCTT+TGG + chr3_1:72663023-72663042 None:intergenic 55.0%
CAAAGAAACGCGCGGAAACC+TGG - chr3_1:72663021-72663040 Msa0373600:CDS 55.0%
TCGTGTCTCGTCTTGAACCC+AGG + chr3_1:72663042-72663061 None:intergenic 55.0%
GACGAGACACGAAGCCTCAT+TGG - chr3_1:72663050-72663069 Msa0373600:CDS 55.0%
TCTCGCGTCGTAGACCAATG+AGG + chr3_1:72663067-72663086 None:intergenic 55.0%
! CATTGGTCTACGACGCGAGA+TGG - chr3_1:72663067-72663086 Msa0373600:CDS 55.0%
! GCGAAGCATCATGATCGAGG+TGG - chr3_1:72663227-72663246 Msa0373600:intron 55.0%
!! CATGATCGAGGTGGTGGAAG+TGG - chr3_1:72663236-72663255 Msa0373600:intron 55.0%
!! GTGGTGGAAGTGGTTCTGGT+GGG - chr3_1:72663246-72663265 Msa0373600:intron 55.0%
ACAGGCTATCGTGTTCCCTC+CGG + chr3_1:72663722-72663741 None:intergenic 55.0%
GACTTGTGGCACAGATGCAC+AGG - chr3_1:72664341-72664360 Msa0373600:intron 55.0%
AGGTTGACCACACAGGCCTT+CGG - chr3_1:72666129-72666148 Msa0373600:intron 55.0%
TGCAACATCTGCTGCGGCAA+TGG + chr3_1:72666722-72666741 None:intergenic 55.0%
! GCTTGCTGCAACATCTGCTG+CGG + chr3_1:72666728-72666747 None:intergenic 55.0%
GCAGCAGATGTTGCAGCAAG+CGG - chr3_1:72666727-72666746 Msa0373600:intron 55.0%
GGGGAAAGTCAGTCTTGCTG+TGG - chr3_1:72666886-72666905 Msa0373600:intron 55.0%
TGGCACTCCGGAAGCCATAA+AGG - chr3_1:72666960-72666979 Msa0373600:intron 55.0%
CACTCCGGAAGCCATAAAGG+AGG - chr3_1:72666963-72666982 Msa0373600:intron 55.0%
CCCGACGTGCCAGAAAATCA+CGG + chr3_1:72667408-72667427 None:intergenic 55.0%
!! CCGTGATTTTCTGGCACGTC+GGG - chr3_1:72667405-72667424 Msa0373600:CDS 55.0%
!! ATTTTCTGGCACGTCGGGCT+TGG - chr3_1:72667410-72667429 Msa0373600:CDS 55.0%
! GTGGGTAAAGCACTCTCCAG+TGG + chr3_1:72667753-72667772 None:intergenic 55.0%
GCTTTACCCACCTGTTGCGA+CGG - chr3_1:72667762-72667781 Msa0373600:five_prime_UTR 55.0%
CATCAACCGTCGCAACAGGT+GGG + chr3_1:72667771-72667790 None:intergenic 55.0%
ATTCTCACCGCCGAGAGCAG+CGG - chr3_1:72662969-72662988 Msa0373600:CDS 60.0%
!! CGAGGTGGTGGAAGTGGTTC+TGG - chr3_1:72663242-72663261 Msa0373600:intron 60.0%
!! GGTGGTGGAAGTGGTTCTGG+TGG - chr3_1:72663245-72663264 Msa0373600:intron 60.0%
CTGCGGATCACGGAAAACCG+CGG + chr3_1:72663992-72664011 None:intergenic 60.0%
CAGGCCTTCGGTCCGGTTTA+TGG - chr3_1:72666141-72666160 Msa0373600:intron 60.0%
GTTGAACCAATCGGACCGGC+TGG - chr3_1:72666163-72666182 Msa0373600:intron 60.0%
TCTGCTGCGGCAATGGCAAG+AGG + chr3_1:72666715-72666734 None:intergenic 60.0%
GCGGAGTCCCTCCTTGGAAT+TGG - chr3_1:72666746-72666765 Msa0373600:intron 60.0%
ACGCCTCGGTATATGGCACC+AGG + chr3_1:72667493-72667512 None:intergenic 60.0%
! GTGAGTTGAGGGCAGGTGCA+TGG - chr3_1:72667511-72667530 Msa0373600:CDS 60.0%
GCATCAACCGTCGCAACAGG+TGG + chr3_1:72667772-72667791 None:intergenic 60.0%
!! AGGTGGTGGTGGTGTTGCGG+CGG + chr3_1:72662927-72662946 None:intergenic 65.0%
AGGATCGTCGCCGCTGCTCT+CGG + chr3_1:72662982-72663001 None:intergenic 65.0%
CAGCGGCGACGATCCTGAGA+TGG - chr3_1:72662986-72663005 Msa0373600:CDS 65.0%
GACCACACAGGCCTTCGGTC+CGG - chr3_1:72666134-72666153 Msa0373600:intron 65.0%
AACCGGACCGAAGGCCTGTG+TGG + chr3_1:72666139-72666158 None:intergenic 65.0%
ACAGGACCAGCCGGTCCGAT+TGG + chr3_1:72666172-72666191 None:intergenic 65.0%
CAGCAAGCGGAGTCCCTCCT+TGG - chr3_1:72666740-72666759 Msa0373600:intron 65.0%
!! CGGCCTGGTGCCATATACCG+AGG - chr3_1:72667487-72667506 Msa0373600:CDS 65.0%
CCTGCCCTCAACTCACGCCT+CGG + chr3_1:72667507-72667526 None:intergenic 65.0%
!! TGGTGTTGCGGCGGTGGTGG+TGG + chr3_1:72662918-72662937 None:intergenic 70.0%
!! TGGTGGTGTTGCGGCGGTGG+TGG + chr3_1:72662921-72662940 None:intergenic 70.0%
!! TGGTGGTGGTGTTGCGGCGG+TGG + chr3_1:72662924-72662943 None:intergenic 70.0%
ATCGTCGCCGCTGCTCTCGG+CGG + chr3_1:72662979-72662998 None:intergenic 70.0%
CTGGCACGTCGGGCTTGGAC+AGG - chr3_1:72667415-72667434 Msa0373600:CDS 70.0%
! CCGAGGCGTGAGTTGAGGGC+AGG - chr3_1:72667504-72667523 Msa0373600:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 72662611 72667792 72662611 ID=Msa0373600;Name=Msa0373600
chr3_1 mRNA 72662611 72667792 72662611 ID=Msa0373600-mRNA-1;Parent=Msa0373600;Name=Msa0373600-mRNA-1;_AED=0.09;_eAED=0.09;_QI=208|0.4|0.5|1|1|1|6|273|434
chr3_1 exon 72662611 72663086 72662611 ID=Msa0373600-mRNA-1:exon:16349;Parent=Msa0373600-mRNA-1
chr3_1 exon 72663250 72663519 72663250 ID=Msa0373600-mRNA-1:exon:16348;Parent=Msa0373600-mRNA-1
chr3_1 exon 72663616 72663811 72663616 ID=Msa0373600-mRNA-1:exon:16347;Parent=Msa0373600-mRNA-1
chr3_1 exon 72663968 72663993 72663968 ID=Msa0373600-mRNA-1:exon:16346;Parent=Msa0373600-mRNA-1
chr3_1 exon 72665070 72665108 72665070 ID=Msa0373600-mRNA-1:exon:16345;Parent=Msa0373600-mRNA-1
chr3_1 exon 72667014 72667792 72667014 ID=Msa0373600-mRNA-1:exon:16344;Parent=Msa0373600-mRNA-1
chr3_1 five_prime_UTR 72667585 72667792 72667585 ID=Msa0373600-mRNA-1:five_prime_utr;Parent=Msa0373600-mRNA-1
chr3_1 CDS 72667014 72667584 72667014 ID=Msa0373600-mRNA-1:cds;Parent=Msa0373600-mRNA-1
chr3_1 CDS 72665070 72665108 72665070 ID=Msa0373600-mRNA-1:cds;Parent=Msa0373600-mRNA-1
chr3_1 CDS 72663968 72663993 72663968 ID=Msa0373600-mRNA-1:cds;Parent=Msa0373600-mRNA-1
chr3_1 CDS 72663616 72663811 72663616 ID=Msa0373600-mRNA-1:cds;Parent=Msa0373600-mRNA-1
chr3_1 CDS 72663250 72663519 72663250 ID=Msa0373600-mRNA-1:cds;Parent=Msa0373600-mRNA-1
chr3_1 CDS 72662884 72663086 72662884 ID=Msa0373600-mRNA-1:cds;Parent=Msa0373600-mRNA-1
chr3_1 three_prime_UTR 72662611 72662883 72662611 ID=Msa0373600-mRNA-1:three_prime_utr;Parent=Msa0373600-mRNA-1
Gene Sequence

>Msa0373600

ATGTATTTATCATCAGAAAAGCCTCGCCCAATCGATTTCTACAAAGAAGAAGCACGCGACATGATGATGGAAGTAGTAGCCAACACCGATCTTCAACCACCACCACCGCCGCAACACCACCACCACCTTCAACAACAACAACCGCAAATGATTCTCACCGCCGAGAGCAGCGGCGACGATCCTGAGATGGAGATCAAAGCTCCAAAGAAACGCGCGGAAACCTGGGTTCAAGACGAGACACGAAGCCTCATTGGTCTACGACGCGAGATGGATTCGTTATTCAACACTTCGAAGTCGAATAAGCATCTTTGGGAGCAGATTTCAGCGAAGATGAGAGAAAAGGGTTTTGATCGGTCACCGACTATGTGTACTGATAAATGGAGGAATCTTTTGAAAGAGTTTAAGAAAGCGAAGCATCATGATCGAGGTGGTGGAAGTGGTTCTGGTGGGAAAATGAGTTGTTACAAAGAGATTGACGAGATCTTAAGAGAGAGAAGTAAGTGTGGACAATATAAGAGTGTTGTTACACCTACTTCTAAAGTTGAATCTTCTTACATGCAATTTGATAAAGGTATTGATGATGCCAACATTTCTTTTGGACCCGTTGAAGGAAGTCATTCAGCTCATGTCTGGCTGGCATTCATTCTTTCCAAAGTAAAAGTTCCTTCATGTTTCTCATCATTCTCAAATACTTGGCAATTAGCTTCTGGAAGACCAACACTCAATCTTGAGAGAAGTTTGGATCATGATGGGCATCCTCTTGCCATTGCCGCAGCAGATGTTGCAGCAAGCGGAGTCCCTCCTTGGAATTGGAGAGAAACTCCCGGAAATGGTGGGGAAAGTCAGTCTTGCTGTGGAAGGGTTATATCAGTCAAATGGGGTGATTATACAAGACGGATAGGTATTGATGGCACTCCGGAAGCCATAAAGGAGGCAATTAGGGCCGCTTTTAGGTTGAGAACTAAACGTGCATTTTGGTTGGAGGATGAGGAACAGATTATCAGAAGTATTGACCGTGACATGCCTATTGGAAATTACACTCTTCACCTTGATGAAGGTTGGGCTCAGTTTCTTCTTTTAGCTAACTTGTGCAAATTTCATGGAATGGCCATCAAAGTATGTCTATATGACGAGTCTGACCATATCCCTGTGCATACTGAAGAGAAGATATTTTATACCGAGGATGATTACCGTGATTTTCTGGCACGTCGGGCTTGGACAGGTCTAAGAGAATTTGATGGTTATAGGAATATTGACAATATGGATGATCTTCGGCCTGGTGCCATATACCGAGGCGTGAGTTGA

Protein sequence

>Msa0373600

MYLSSEKPRPIDFYKEEARDMMMEVVANTDLQPPPPPQHHHHLQQQQPQMILTAESSGDDPEMEIKAPKKRAETWVQDETRSLIGLRREMDSLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGGGSGSGGKMSCYKEIDEILRERSKCGQYKSVVTPTSKVESSYMQFDKGIDDANISFGPVEGSHSAHVWLAFILSKVKVPSCFSSFSNTWQLASGRPTLNLERSLDHDGHPLAIAAADVAASGVPPWNWRETPGNGGESQSCCGRVISVKWGDYTRRIGIDGTPEAIKEAIRAAFRLRTKRAFWLEDEEQIIRSIDRDMPIGNYTLHLDEGWAQFLLLANLCKFHGMAIKVCLYDESDHIPVHTEEKIFYTEDDYRDFLARRAWTGLREFDGYRNIDNMDDLRPGAIYRGVS*