Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374940 | KEH41184.1 | 63.091 | 317 | 62 | 5 | 12 | 284 | 1 | 306 | 3.20e-121 | 361 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374940 | A0A072VGK8 | 63.091 | 317 | 62 | 5 | 12 | 284 | 1 | 306 | 1.53e-121 | 361 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0374940 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374940 | MtrunA17_Chr1g0169171 | 61.972 | 284 | 53 | 5 | 45 | 284 | 1 | 273 | 1.30e-106 | 312 |
| Msa0374940 | MtrunA17_Chr1g0169161 | 57.049 | 305 | 99 | 4 | 12 | 284 | 1 | 305 | 4.83e-103 | 304 |
| Msa0374940 | MtrunA17_Chr3g0125161 | 86.466 | 133 | 15 | 1 | 1 | 130 | 1 | 133 | 9.14e-76 | 229 |
| Msa0374940 | MtrunA17_Chr3g0125151 | 86.458 | 96 | 13 | 0 | 189 | 284 | 1 | 96 | 3.03e-59 | 185 |
| Msa0374940 | MtrunA17_Chr1g0169081 | 68.800 | 125 | 36 | 2 | 169 | 291 | 178 | 301 | 3.96e-58 | 189 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 56 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCAGTGTTGGTCATAATT+TGG | 0.253758 | 3_1:-74484456 | None:intergenic |
| ATTTCATCATCTTCAAGTTT+TGG | 0.269280 | 3_1:-74485391 | None:intergenic |
| CAGAGAAGAAAATTCTTTAG+AGG | 0.300748 | 3_1:+74484864 | Msa0374940:CDS |
| GCATAGAAGTATGGATTTCC+TGG | 0.326303 | 3_1:-74485436 | None:intergenic |
| AGAGAGGAGAAATACGTAAA+TGG | 0.332365 | 3_1:+74485993 | Msa0374940:CDS |
| TTACCTTTGGAATGGATAGA+TGG | 0.348383 | 3_1:-74483909 | None:intergenic |
| ATGAGCTTCACAAAAGCAAT+TGG | 0.382357 | 3_1:-74484721 | None:intergenic |
| TATGTTGGAGGATGAGGAAG+AGG | 0.406388 | 3_1:+74485002 | Msa0374940:CDS |
| TAATAATATGTTGGAGGATG+AGG | 0.419640 | 3_1:+74484996 | Msa0374940:CDS |
| CGCGTCAAAGCACATTCTAT+TGG | 0.421177 | 3_1:+74484805 | Msa0374940:CDS |
| ACATTACAGACCCAACGAAT+TGG | 0.430909 | 3_1:+74485462 | Msa0374940:CDS |
| GTATGTGTTGTGTTGATTTG+TGG | 0.448016 | 3_1:-74485965 | None:intergenic |
| CCTTGCAGTGGCAACATACA+AGG | 0.465539 | 3_1:-74485786 | None:intergenic |
| GATTGTGGTTTAGGGAGCAT+TGG | 0.466163 | 3_1:+74485352 | Msa0374940:intron |
| AAGAACTAAACCAATTCGTT+GGG | 0.487807 | 3_1:-74485472 | None:intergenic |
| AAAGAACTAAACCAATTCGT+TGG | 0.488811 | 3_1:-74485473 | None:intergenic |
| CTCTTCCTCTATGATCCCTT+AGG | 0.492258 | 3_1:-74484777 | None:intergenic |
| TTGTGGCAATATGTGATGAT+AGG | 0.496982 | 3_1:-74485948 | None:intergenic |
| GGAGGAAAATAATAATATGT+TGG | 0.500575 | 3_1:+74484987 | Msa0374940:CDS |
| GGGATCATAGAGGAAGAGAT+TGG | 0.510517 | 3_1:+74484782 | Msa0374940:CDS |
| AGAGAAGCATTGTGAGAGAA+TGG | 0.512487 | 3_1:+74484513 | Msa0374940:CDS |
| TCTCACAATGCTTCTCTATG+AGG | 0.514753 | 3_1:-74484507 | None:intergenic |
| AATGGTAGAGGAAGAAGAAG+AGG | 0.518113 | 3_1:+74485080 | Msa0374940:CDS |
| AAGCACATTCTATTGGTGGC+AGG | 0.522720 | 3_1:+74484812 | Msa0374940:CDS |
| GAAATACGTAAATGGAAAGA+TGG | 0.523151 | 3_1:+74486001 | Msa0374940:CDS |
| GGAAAATAATAATATGTTGG+AGG | 0.527415 | 3_1:+74484990 | Msa0374940:CDS |
| GAAGAGGAAGAAGATGAAGA+TGG | 0.532114 | 3_1:+74485096 | Msa0374940:CDS |
| GTTGAAATGTATATTCAGCC+AGG | 0.532204 | 3_1:+74485418 | Msa0374940:CDS |
| TTGGAGGATGAGGAAGAGGA+AGG | 0.540476 | 3_1:+74485006 | Msa0374940:CDS |
| TGAGCTTCACAAAAGCAATT+GGG | 0.545679 | 3_1:-74484720 | None:intergenic |
| GTCAAAGCACATTCTATTGG+TGG | 0.547612 | 3_1:+74484808 | Msa0374940:CDS |
| AAAGACAAAGGTAATGGATG+AGG | 0.553323 | 3_1:+74484966 | Msa0374940:CDS |
| TTTCAATATGTGTGAAAACA+AGG | 0.554136 | 3_1:-74484897 | None:intergenic |
| GACAAAGGTAATGGATGAGG+AGG | 0.556485 | 3_1:+74484969 | Msa0374940:CDS |
| GAGGAACACCTTGGCAGTGT+TGG | 0.557953 | 3_1:-74484467 | None:intergenic |
| AGCTCATGCTTTCGAAACAA+AGG | 0.561664 | 3_1:+74484737 | Msa0374940:CDS |
| GGAAGACTTTGAAGAAGTTG+AGG | 0.564880 | 3_1:-74484486 | None:intergenic |
| GCTCATGCTTTCGAAACAAA+GGG | 0.566004 | 3_1:+74484738 | Msa0374940:CDS |
| CCTTGTATGTTGCCACTGCA+AGG | 0.576526 | 3_1:+74485786 | Msa0374940:CDS |
| GATGATGATGATGGTGATGG+TGG | 0.586203 | 3_1:+74485030 | Msa0374940:CDS |
| TTGTGCGAAGTTGTGTTGCA+TGG | 0.595631 | 3_1:+74486090 | Msa0374940:CDS |
| GAAGAAGTTGAGGAACACCT+TGG | 0.598409 | 3_1:-74484476 | None:intergenic |
| CGACGGTTATACAATGGTAG+AGG | 0.603192 | 3_1:+74485068 | Msa0374940:CDS |
| TGATATGCTTTGTAAAGCAA+AGG | 0.607441 | 3_1:-74485762 | None:intergenic |
| TTTATCCTAAGGGATCATAG+AGG | 0.616153 | 3_1:+74484772 | Msa0374940:CDS |
| ATGCCATCTATCCATTCCAA+AGG | 0.619737 | 3_1:+74483906 | Msa0374940:CDS |
| AATTATGACCAACACTGCCA+AGG | 0.625272 | 3_1:+74484459 | Msa0374940:CDS |
| GAAGAAGATGAAGATGGTGA+TGG | 0.640201 | 3_1:+74485102 | Msa0374940:CDS |
| GAGGAAGGTGATGATGATGA+TGG | 0.640863 | 3_1:+74485021 | Msa0374940:CDS |
| ATAACAATTATACCTTGCAG+TGG | 0.648271 | 3_1:-74485798 | None:intergenic |
| GGTGATGATGATGATGGTGA+TGG | 0.656321 | 3_1:+74485027 | Msa0374940:CDS |
| ACAACACATACCGAAAAGAG+AGG | 0.656927 | 3_1:+74485977 | Msa0374940:CDS |
| CTTGCAGTGGCAACATACAA+GGG | 0.670891 | 3_1:-74485785 | None:intergenic |
| CGACGACGACGGTTATACAA+TGG | 0.682900 | 3_1:+74485062 | Msa0374940:CDS |
| GGAGATGACGACGACGACGA+CGG | 0.690919 | 3_1:+74485051 | Msa0374940:CDS |
| TGCGAAGTTGTGTTGCATGG+AGG | 0.718120 | 3_1:+74486093 | Msa0374940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAAAATATTTGAATTTTT+AGG | + | chr3_1:74484395-74484414 | Msa0374940:intron | 10.0% |
| !!! | TATCAGTTTTTTTTTTTTTT+TGG | - | chr3_1:74484642-74484661 | None:intergenic | 10.0% |
| !!! | AAGAAAATATTTGAATTTTT+AGG | + | chr3_1:74484395-74484414 | Msa0374940:intron | 10.0% |
| !!! | TATCAGTTTTTTTTTTTTTT+TGG | - | chr3_1:74484642-74484661 | None:intergenic | 10.0% |
| !! | TAACAATTAACTATTAACAT+TGG | - | chr3_1:74484176-74484195 | None:intergenic | 15.0% |
| !! | AATTTCTTTAGCAATTTATT+TGG | + | chr3_1:74484350-74484369 | Msa0374940:intron | 15.0% |
| !!! | TATTTTAAAGAATGTTGTTA+AGG | + | chr3_1:74485732-74485751 | Msa0374940:CDS | 15.0% |
| !! | TTCATAATTGTAACAAAAAA+AGG | - | chr3_1:74485831-74485850 | None:intergenic | 15.0% |
| !!! | TTTTTTTGTTACAATTATGA+AGG | + | chr3_1:74485830-74485849 | Msa0374940:intron | 15.0% |
| !!! | TTTTTTGTTACAATTATGAA+GGG | + | chr3_1:74485831-74485850 | Msa0374940:intron | 15.0% |
| !! | TAACAATTAACTATTAACAT+TGG | - | chr3_1:74484176-74484195 | None:intergenic | 15.0% |
| !! | AATTTCTTTAGCAATTTATT+TGG | + | chr3_1:74484350-74484369 | Msa0374940:intron | 15.0% |
| !!! | TATTTTAAAGAATGTTGTTA+AGG | + | chr3_1:74485732-74485751 | Msa0374940:CDS | 15.0% |
| !! | TTCATAATTGTAACAAAAAA+AGG | - | chr3_1:74485831-74485850 | None:intergenic | 15.0% |
| !!! | TTTTTTTGTTACAATTATGA+AGG | + | chr3_1:74485830-74485849 | Msa0374940:intron | 15.0% |
| !!! | TTTTTTGTTACAATTATGAA+GGG | + | chr3_1:74485831-74485850 | Msa0374940:intron | 15.0% |
| !! | AAAGAAAAAAAGGTTTAAGT+TGG | - | chr3_1:74484109-74484128 | None:intergenic | 20.0% |
| !! | ACAAGAAGAAAAAGAAAAAA+AGG | - | chr3_1:74484119-74484138 | None:intergenic | 20.0% |
| !! | ATTAAGACAATAAAAACTTG+GGG | - | chr3_1:74484278-74484297 | None:intergenic | 20.0% |
| !! | CATTAAGACAATAAAAACTT+GGG | - | chr3_1:74484279-74484298 | None:intergenic | 20.0% |
| !! | AACTTAATAATAATAATCGG+AGG | - | chr3_1:74484564-74484583 | None:intergenic | 20.0% |
| !!! | TATTGCAATATTTTATCCTA+AGG | + | chr3_1:74484761-74484780 | Msa0374940:CDS | 20.0% |
| !!! | ATTGCAATATTTTATCCTAA+GGG | + | chr3_1:74484762-74484781 | Msa0374940:CDS | 20.0% |
| !! | AAAGAAAAAAAGGTTTAAGT+TGG | - | chr3_1:74484109-74484128 | None:intergenic | 20.0% |
| !! | ACAAGAAGAAAAAGAAAAAA+AGG | - | chr3_1:74484119-74484138 | None:intergenic | 20.0% |
| !! | ATTAAGACAATAAAAACTTG+GGG | - | chr3_1:74484278-74484297 | None:intergenic | 20.0% |
| !! | CATTAAGACAATAAAAACTT+GGG | - | chr3_1:74484279-74484298 | None:intergenic | 20.0% |
| !! | AACTTAATAATAATAATCGG+AGG | - | chr3_1:74484564-74484583 | None:intergenic | 20.0% |
| !!! | TATTGCAATATTTTATCCTA+AGG | + | chr3_1:74484761-74484780 | Msa0374940:CDS | 20.0% |
| !!! | ATTGCAATATTTTATCCTAA+GGG | + | chr3_1:74484762-74484781 | Msa0374940:CDS | 20.0% |
| ! | TATGACAAAATATGCAACAA+AGG | - | chr3_1:74483951-74483970 | None:intergenic | 25.0% |
| ! | CCATTAAGACAATAAAAACT+TGG | - | chr3_1:74484280-74484299 | None:intergenic | 25.0% |
| !! | CCAAGTTTTTATTGTCTTAA+TGG | + | chr3_1:74484277-74484296 | Msa0374940:intron | 25.0% |
| ! | CTGTCTTATAATTTGAATGT+TGG | + | chr3_1:74484418-74484437 | Msa0374940:intron | 25.0% |
| ! | TTTCAATATGTGTGAAAACA+AGG | - | chr3_1:74484900-74484919 | None:intergenic | 25.0% |
| ! | ATCAATGTGTAAAAAGACAA+AGG | + | chr3_1:74484954-74484973 | Msa0374940:CDS | 25.0% |
| ! | GGAGGAAAATAATAATATGT+TGG | + | chr3_1:74484987-74485006 | Msa0374940:CDS | 25.0% |
| ! | GGAAAATAATAATATGTTGG+AGG | + | chr3_1:74484990-74485009 | Msa0374940:CDS | 25.0% |
| ! | ATTTACCTAATGATTGATTG+TGG | + | chr3_1:74485337-74485356 | Msa0374940:intron | 25.0% |
| ! | TAATGATTGATTGTGGTTTA+GGG | + | chr3_1:74485344-74485363 | Msa0374940:intron | 25.0% |
| !!! | ATTTCATCATCTTCAAGTTT+TGG | - | chr3_1:74485394-74485413 | None:intergenic | 25.0% |
| !! | TAATGTTTTGCATAGAAGTA+TGG | - | chr3_1:74485448-74485467 | None:intergenic | 25.0% |
| ! | GAAGGAAAGAAAAAATGTAA+CGG | - | chr3_1:74485677-74485696 | None:intergenic | 25.0% |
| ! | AATTGTAACAAAAAAAGGCA+AGG | - | chr3_1:74485826-74485845 | None:intergenic | 25.0% |
| !!! | TTCATCTTTTTTGTTATCAC+AGG | + | chr3_1:74485901-74485920 | Msa0374940:intron | 25.0% |
| ! | TATGACAAAATATGCAACAA+AGG | - | chr3_1:74483951-74483970 | None:intergenic | 25.0% |
| ! | CCATTAAGACAATAAAAACT+TGG | - | chr3_1:74484280-74484299 | None:intergenic | 25.0% |
| !! | CCAAGTTTTTATTGTCTTAA+TGG | + | chr3_1:74484277-74484296 | Msa0374940:intron | 25.0% |
| ! | CTGTCTTATAATTTGAATGT+TGG | + | chr3_1:74484418-74484437 | Msa0374940:intron | 25.0% |
| ! | TTTCAATATGTGTGAAAACA+AGG | - | chr3_1:74484900-74484919 | None:intergenic | 25.0% |
| ! | ATCAATGTGTAAAAAGACAA+AGG | + | chr3_1:74484954-74484973 | Msa0374940:CDS | 25.0% |
| ! | GGAGGAAAATAATAATATGT+TGG | + | chr3_1:74484987-74485006 | Msa0374940:CDS | 25.0% |
| ! | GGAAAATAATAATATGTTGG+AGG | + | chr3_1:74484990-74485009 | Msa0374940:CDS | 25.0% |
| ! | ATTTACCTAATGATTGATTG+TGG | + | chr3_1:74485337-74485356 | Msa0374940:intron | 25.0% |
| ! | TAATGATTGATTGTGGTTTA+GGG | + | chr3_1:74485344-74485363 | Msa0374940:intron | 25.0% |
| !!! | ATTTCATCATCTTCAAGTTT+TGG | - | chr3_1:74485394-74485413 | None:intergenic | 25.0% |
| !! | TAATGTTTTGCATAGAAGTA+TGG | - | chr3_1:74485448-74485467 | None:intergenic | 25.0% |
| ! | GAAGGAAAGAAAAAATGTAA+CGG | - | chr3_1:74485677-74485696 | None:intergenic | 25.0% |
| ! | AATTGTAACAAAAAAAGGCA+AGG | - | chr3_1:74485826-74485845 | None:intergenic | 25.0% |
| !!! | TTCATCTTTTTTGTTATCAC+AGG | + | chr3_1:74485901-74485920 | Msa0374940:intron | 25.0% |
| ACAAAATATGCAACAAAGGA+AGG | - | chr3_1:74483947-74483966 | None:intergenic | 30.0% | |
| GTTTCATTCCATTTCATGTA+TGG | - | chr3_1:74483983-74484002 | None:intergenic | 30.0% | |
| !! | ACTGGTTTGAGTAAAATGTT+AGG | - | chr3_1:74484243-74484262 | None:intergenic | 30.0% |
| ! | AGATCAATGTTACTTAAGAG+TGG | - | chr3_1:74484668-74484687 | None:intergenic | 30.0% |
| CAGAGAAGAAAATTCTTTAG+AGG | + | chr3_1:74484864-74484883 | Msa0374940:CDS | 30.0% | |
| GTGTAAAAAGACAAAGGTAA+TGG | + | chr3_1:74484960-74484979 | Msa0374940:CDS | 30.0% | |
| TAATAATATGTTGGAGGATG+AGG | + | chr3_1:74484996-74485015 | Msa0374940:CDS | 30.0% | |
| ATGAAAGCAGAAAAGAAGAA+AGG | + | chr3_1:74485180-74485199 | Msa0374940:intron | 30.0% | |
| CTAAACCACAATCAATCATT+AGG | - | chr3_1:74485345-74485364 | None:intergenic | 30.0% | |
| CTAATGATTGATTGTGGTTT+AGG | + | chr3_1:74485343-74485362 | Msa0374940:intron | 30.0% | |
| AAGAACTAAACCAATTCGTT+GGG | - | chr3_1:74485475-74485494 | None:intergenic | 30.0% | |
| AAAGAACTAAACCAATTCGT+TGG | - | chr3_1:74485476-74485495 | None:intergenic | 30.0% | |
| ! | TAGCTCATTTTCTTAAGCTT+AGG | + | chr3_1:74485593-74485612 | Msa0374940:intron | 30.0% |
| ! | AGCTCATTTTCTTAAGCTTA+GGG | + | chr3_1:74485594-74485613 | Msa0374940:intron | 30.0% |
| TGATATGCTTTGTAAAGCAA+AGG | - | chr3_1:74485765-74485784 | None:intergenic | 30.0% | |
| ATAACAATTATACCTTGCAG+TGG | - | chr3_1:74485801-74485820 | None:intergenic | 30.0% | |
| ACAAAAAAGATGAATGCAAC+TGG | - | chr3_1:74485895-74485914 | None:intergenic | 30.0% | |
| GAAATACGTAAATGGAAAGA+TGG | + | chr3_1:74486001-74486020 | Msa0374940:CDS | 30.0% | |
| ACAAAATATGCAACAAAGGA+AGG | - | chr3_1:74483947-74483966 | None:intergenic | 30.0% | |
| GTTTCATTCCATTTCATGTA+TGG | - | chr3_1:74483983-74484002 | None:intergenic | 30.0% | |
| !! | ACTGGTTTGAGTAAAATGTT+AGG | - | chr3_1:74484243-74484262 | None:intergenic | 30.0% |
| ! | AGATCAATGTTACTTAAGAG+TGG | - | chr3_1:74484668-74484687 | None:intergenic | 30.0% |
| CAGAGAAGAAAATTCTTTAG+AGG | + | chr3_1:74484864-74484883 | Msa0374940:CDS | 30.0% | |
| GTGTAAAAAGACAAAGGTAA+TGG | + | chr3_1:74484960-74484979 | Msa0374940:CDS | 30.0% | |
| TAATAATATGTTGGAGGATG+AGG | + | chr3_1:74484996-74485015 | Msa0374940:CDS | 30.0% | |
| ATGAAAGCAGAAAAGAAGAA+AGG | + | chr3_1:74485180-74485199 | Msa0374940:intron | 30.0% | |
| CTAAACCACAATCAATCATT+AGG | - | chr3_1:74485345-74485364 | None:intergenic | 30.0% | |
| CTAATGATTGATTGTGGTTT+AGG | + | chr3_1:74485343-74485362 | Msa0374940:intron | 30.0% | |
| AAGAACTAAACCAATTCGTT+GGG | - | chr3_1:74485475-74485494 | None:intergenic | 30.0% | |
| AAAGAACTAAACCAATTCGT+TGG | - | chr3_1:74485476-74485495 | None:intergenic | 30.0% | |
| ! | TAGCTCATTTTCTTAAGCTT+AGG | + | chr3_1:74485593-74485612 | Msa0374940:intron | 30.0% |
| ! | AGCTCATTTTCTTAAGCTTA+GGG | + | chr3_1:74485594-74485613 | Msa0374940:intron | 30.0% |
| TGATATGCTTTGTAAAGCAA+AGG | - | chr3_1:74485765-74485784 | None:intergenic | 30.0% | |
| ATAACAATTATACCTTGCAG+TGG | - | chr3_1:74485801-74485820 | None:intergenic | 30.0% | |
| ACAAAAAAGATGAATGCAAC+TGG | - | chr3_1:74485895-74485914 | None:intergenic | 30.0% | |
| GAAATACGTAAATGGAAAGA+TGG | + | chr3_1:74486001-74486020 | Msa0374940:CDS | 30.0% | |
| !! | TTACCTTTGGAATGGATAGA+TGG | - | chr3_1:74483912-74483931 | None:intergenic | 35.0% |
| !! | GAGTTCTTTTACCTTTGGAA+TGG | - | chr3_1:74483920-74483939 | None:intergenic | 35.0% |
| ATATGCAACAAAGGAAGGAT+GGG | - | chr3_1:74483942-74483961 | None:intergenic | 35.0% | |
| AATATGCAACAAAGGAAGGA+TGG | - | chr3_1:74483943-74483962 | None:intergenic | 35.0% | |
| CATCTCTTCCATACATGAAA+TGG | + | chr3_1:74483972-74483991 | Msa0374940:intron | 35.0% | |
| TACAGAAGTAAAGTAGCCAA+GGG | - | chr3_1:74484033-74484052 | None:intergenic | 35.0% | |
| TTACAGAAGTAAAGTAGCCA+AGG | - | chr3_1:74484034-74484053 | None:intergenic | 35.0% | |
| ! | TTGGCTACTTTACTTCTGTA+AGG | + | chr3_1:74484033-74484052 | Msa0374940:intron | 35.0% |
| TGAGCTTCACAAAAGCAATT+GGG | - | chr3_1:74484723-74484742 | None:intergenic | 35.0% | |
| ATGAGCTTCACAAAAGCAAT+TGG | - | chr3_1:74484724-74484743 | None:intergenic | 35.0% | |
| TTTATCCTAAGGGATCATAG+AGG | + | chr3_1:74484772-74484791 | Msa0374940:CDS | 35.0% | |
| !!! | GGCTTTATTTTGATGATGGT+TGG | + | chr3_1:74484833-74484852 | Msa0374940:CDS | 35.0% |
| !! | AAAGACAAAGGTAATGGATG+AGG | + | chr3_1:74484966-74484985 | Msa0374940:CDS | 35.0% |
| ! | TGATGATGAAGATGATGATG+AGG | + | chr3_1:74485125-74485144 | Msa0374940:intron | 35.0% |
| AAAGAAGAAAGGAGTTGACA+AGG | + | chr3_1:74485191-74485210 | Msa0374940:intron | 35.0% | |
| AAGAAGAAAGGAGTTGACAA+GGG | + | chr3_1:74485192-74485211 | Msa0374940:intron | 35.0% | |
| CAAAAACATACATGCTTTGC+AGG | - | chr3_1:74485253-74485272 | None:intergenic | 35.0% | |
| GTTGAAATGTATATTCAGCC+AGG | + | chr3_1:74485418-74485437 | Msa0374940:CDS | 35.0% | |
| ! | ATTTTCTTAAGCTTAGGGTG+AGG | + | chr3_1:74485599-74485618 | Msa0374940:intron | 35.0% |
| ! | CGGTTGTAAAAGCTTGTTTA+GGG | - | chr3_1:74485657-74485676 | None:intergenic | 35.0% |
| ! | ACGGTTGTAAAAGCTTGTTT+AGG | - | chr3_1:74485658-74485677 | None:intergenic | 35.0% |
| TTCTTTCCTTCATGTGCTTA+TGG | + | chr3_1:74485686-74485705 | Msa0374940:intron | 35.0% | |
| GTAATACCATAAGCACATGA+AGG | - | chr3_1:74485695-74485714 | None:intergenic | 35.0% | |
| TTGTGGCAATATGTGATGAT+AGG | - | chr3_1:74485951-74485970 | None:intergenic | 35.0% | |
| !! | GTATGTGTTGTGTTGATTTG+TGG | - | chr3_1:74485968-74485987 | None:intergenic | 35.0% |
| ! | ACGTATTTCTCCTCTCTTTT+CGG | - | chr3_1:74485990-74486009 | None:intergenic | 35.0% |
| AGAGAGGAGAAATACGTAAA+TGG | + | chr3_1:74485993-74486012 | Msa0374940:CDS | 35.0% | |
| !! | TTACCTTTGGAATGGATAGA+TGG | - | chr3_1:74483912-74483931 | None:intergenic | 35.0% |
| !! | GAGTTCTTTTACCTTTGGAA+TGG | - | chr3_1:74483920-74483939 | None:intergenic | 35.0% |
| ATATGCAACAAAGGAAGGAT+GGG | - | chr3_1:74483942-74483961 | None:intergenic | 35.0% | |
| AATATGCAACAAAGGAAGGA+TGG | - | chr3_1:74483943-74483962 | None:intergenic | 35.0% | |
| CATCTCTTCCATACATGAAA+TGG | + | chr3_1:74483972-74483991 | Msa0374940:intron | 35.0% | |
| TACAGAAGTAAAGTAGCCAA+GGG | - | chr3_1:74484033-74484052 | None:intergenic | 35.0% | |
| TTACAGAAGTAAAGTAGCCA+AGG | - | chr3_1:74484034-74484053 | None:intergenic | 35.0% | |
| ! | TTGGCTACTTTACTTCTGTA+AGG | + | chr3_1:74484033-74484052 | Msa0374940:intron | 35.0% |
| TGAGCTTCACAAAAGCAATT+GGG | - | chr3_1:74484723-74484742 | None:intergenic | 35.0% | |
| ATGAGCTTCACAAAAGCAAT+TGG | - | chr3_1:74484724-74484743 | None:intergenic | 35.0% | |
| TTTATCCTAAGGGATCATAG+AGG | + | chr3_1:74484772-74484791 | Msa0374940:CDS | 35.0% | |
| !!! | GGCTTTATTTTGATGATGGT+TGG | + | chr3_1:74484833-74484852 | Msa0374940:CDS | 35.0% |
| !! | AAAGACAAAGGTAATGGATG+AGG | + | chr3_1:74484966-74484985 | Msa0374940:CDS | 35.0% |
| ! | TGATGATGAAGATGATGATG+AGG | + | chr3_1:74485125-74485144 | Msa0374940:intron | 35.0% |
| AAAGAAGAAAGGAGTTGACA+AGG | + | chr3_1:74485191-74485210 | Msa0374940:intron | 35.0% | |
| AAGAAGAAAGGAGTTGACAA+GGG | + | chr3_1:74485192-74485211 | Msa0374940:intron | 35.0% | |
| CAAAAACATACATGCTTTGC+AGG | - | chr3_1:74485253-74485272 | None:intergenic | 35.0% | |
| GTTGAAATGTATATTCAGCC+AGG | + | chr3_1:74485418-74485437 | Msa0374940:CDS | 35.0% | |
| ! | ATTTTCTTAAGCTTAGGGTG+AGG | + | chr3_1:74485599-74485618 | Msa0374940:intron | 35.0% |
| ! | CGGTTGTAAAAGCTTGTTTA+GGG | - | chr3_1:74485657-74485676 | None:intergenic | 35.0% |
| ! | ACGGTTGTAAAAGCTTGTTT+AGG | - | chr3_1:74485658-74485677 | None:intergenic | 35.0% |
| TTCTTTCCTTCATGTGCTTA+TGG | + | chr3_1:74485686-74485705 | Msa0374940:intron | 35.0% | |
| GTAATACCATAAGCACATGA+AGG | - | chr3_1:74485695-74485714 | None:intergenic | 35.0% | |
| TTGTGGCAATATGTGATGAT+AGG | - | chr3_1:74485951-74485970 | None:intergenic | 35.0% | |
| !! | GTATGTGTTGTGTTGATTTG+TGG | - | chr3_1:74485968-74485987 | None:intergenic | 35.0% |
| ! | ACGTATTTCTCCTCTCTTTT+CGG | - | chr3_1:74485990-74486009 | None:intergenic | 35.0% |
| AGAGAGGAGAAATACGTAAA+TGG | + | chr3_1:74485993-74486012 | Msa0374940:CDS | 35.0% | |
| ATGCCATCTATCCATTCCAA+AGG | + | chr3_1:74483906-74483925 | Msa0374940:CDS | 40.0% | |
| ! | GATGGGAGTTCTTTTACCTT+TGG | - | chr3_1:74483925-74483944 | None:intergenic | 40.0% |
| TTGGGGTTAGATAACTCAAC+TGG | - | chr3_1:74484261-74484280 | None:intergenic | 40.0% | |
| !! | TGGCAGTGTTGGTCATAATT+TGG | - | chr3_1:74484459-74484478 | None:intergenic | 40.0% |
| AATTATGACCAACACTGCCA+AGG | + | chr3_1:74484459-74484478 | Msa0374940:CDS | 40.0% | |
| ! | GGAAGACTTTGAAGAAGTTG+AGG | - | chr3_1:74484489-74484508 | None:intergenic | 40.0% |
| TCTCACAATGCTTCTCTATG+AGG | - | chr3_1:74484510-74484529 | None:intergenic | 40.0% | |
| !! | AGAGAAGCATTGTGAGAGAA+TGG | + | chr3_1:74484513-74484532 | Msa0374940:CDS | 40.0% |
| AGCTCATGCTTTCGAAACAA+AGG | + | chr3_1:74484737-74484756 | Msa0374940:CDS | 40.0% | |
| GCTCATGCTTTCGAAACAAA+GGG | + | chr3_1:74484738-74484757 | Msa0374940:CDS | 40.0% | |
| GTCAAAGCACATTCTATTGG+TGG | + | chr3_1:74484808-74484827 | Msa0374940:CDS | 40.0% | |
| !!! | GGCAGGCTTTATTTTGATGA+TGG | + | chr3_1:74484829-74484848 | Msa0374940:CDS | 40.0% |
| AATGGTAGAGGAAGAAGAAG+AGG | + | chr3_1:74485080-74485099 | Msa0374940:CDS | 40.0% | |
| GAAGAGGAAGAAGATGAAGA+TGG | + | chr3_1:74485096-74485115 | Msa0374940:CDS | 40.0% | |
| GAAGAAGATGAAGATGGTGA+TGG | + | chr3_1:74485102-74485121 | Msa0374940:CDS | 40.0% | |
| ! | TGAAGATGATGATGAGGATG+AGG | + | chr3_1:74485131-74485150 | Msa0374940:intron | 40.0% |
| ! | GCATAGAAGTATGGATTTCC+TGG | - | chr3_1:74485439-74485458 | None:intergenic | 40.0% |
| ACATTACAGACCCAACGAAT+TGG | + | chr3_1:74485462-74485481 | Msa0374940:CDS | 40.0% | |
| ACAACACATACCGAAAAGAG+AGG | + | chr3_1:74485977-74485996 | Msa0374940:CDS | 40.0% | |
| ! | ATGGTCGAGTTTTTGTGCTA+GGG | + | chr3_1:74486020-74486039 | Msa0374940:CDS | 40.0% |
| ATGCCATCTATCCATTCCAA+AGG | + | chr3_1:74483906-74483925 | Msa0374940:CDS | 40.0% | |
| ! | GATGGGAGTTCTTTTACCTT+TGG | - | chr3_1:74483925-74483944 | None:intergenic | 40.0% |
| TTGGGGTTAGATAACTCAAC+TGG | - | chr3_1:74484261-74484280 | None:intergenic | 40.0% | |
| !! | TGGCAGTGTTGGTCATAATT+TGG | - | chr3_1:74484459-74484478 | None:intergenic | 40.0% |
| AATTATGACCAACACTGCCA+AGG | + | chr3_1:74484459-74484478 | Msa0374940:CDS | 40.0% | |
| ! | GGAAGACTTTGAAGAAGTTG+AGG | - | chr3_1:74484489-74484508 | None:intergenic | 40.0% |
| TCTCACAATGCTTCTCTATG+AGG | - | chr3_1:74484510-74484529 | None:intergenic | 40.0% | |
| !! | AGAGAAGCATTGTGAGAGAA+TGG | + | chr3_1:74484513-74484532 | Msa0374940:CDS | 40.0% |
| AGCTCATGCTTTCGAAACAA+AGG | + | chr3_1:74484737-74484756 | Msa0374940:CDS | 40.0% | |
| GCTCATGCTTTCGAAACAAA+GGG | + | chr3_1:74484738-74484757 | Msa0374940:CDS | 40.0% | |
| GTCAAAGCACATTCTATTGG+TGG | + | chr3_1:74484808-74484827 | Msa0374940:CDS | 40.0% | |
| !!! | GGCAGGCTTTATTTTGATGA+TGG | + | chr3_1:74484829-74484848 | Msa0374940:CDS | 40.0% |
| AATGGTAGAGGAAGAAGAAG+AGG | + | chr3_1:74485080-74485099 | Msa0374940:CDS | 40.0% | |
| GAAGAGGAAGAAGATGAAGA+TGG | + | chr3_1:74485096-74485115 | Msa0374940:CDS | 40.0% | |
| GAAGAAGATGAAGATGGTGA+TGG | + | chr3_1:74485102-74485121 | Msa0374940:CDS | 40.0% | |
| ! | TGAAGATGATGATGAGGATG+AGG | + | chr3_1:74485131-74485150 | Msa0374940:intron | 40.0% |
| ! | GCATAGAAGTATGGATTTCC+TGG | - | chr3_1:74485439-74485458 | None:intergenic | 40.0% |
| ACATTACAGACCCAACGAAT+TGG | + | chr3_1:74485462-74485481 | Msa0374940:CDS | 40.0% | |
| ACAACACATACCGAAAAGAG+AGG | + | chr3_1:74485977-74485996 | Msa0374940:CDS | 40.0% | |
| ! | ATGGTCGAGTTTTTGTGCTA+GGG | + | chr3_1:74486020-74486039 | Msa0374940:CDS | 40.0% |
| GAAGAAGTTGAGGAACACCT+TGG | - | chr3_1:74484479-74484498 | None:intergenic | 45.0% | |
| CTCTTCCTCTATGATCCCTT+AGG | - | chr3_1:74484780-74484799 | None:intergenic | 45.0% | |
| GGGATCATAGAGGAAGAGAT+TGG | + | chr3_1:74484782-74484801 | Msa0374940:CDS | 45.0% | |
| CGCGTCAAAGCACATTCTAT+TGG | + | chr3_1:74484805-74484824 | Msa0374940:CDS | 45.0% | |
| ! | AAGCACATTCTATTGGTGGC+AGG | + | chr3_1:74484812-74484831 | Msa0374940:CDS | 45.0% |
| !! | GACAAAGGTAATGGATGAGG+AGG | + | chr3_1:74484969-74484988 | Msa0374940:CDS | 45.0% |
| TATGTTGGAGGATGAGGAAG+AGG | + | chr3_1:74485002-74485021 | Msa0374940:CDS | 45.0% | |
| ! | GAGGAAGGTGATGATGATGA+TGG | + | chr3_1:74485021-74485040 | Msa0374940:CDS | 45.0% |
| !! | GGTGATGATGATGATGGTGA+TGG | + | chr3_1:74485027-74485046 | Msa0374940:CDS | 45.0% |
| !! | GATGATGATGATGGTGATGG+TGG | + | chr3_1:74485030-74485049 | Msa0374940:CDS | 45.0% |
| CGACGGTTATACAATGGTAG+AGG | + | chr3_1:74485068-74485087 | Msa0374940:CDS | 45.0% | |
| ! | GATTGTGGTTTAGGGAGCAT+TGG | + | chr3_1:74485352-74485371 | Msa0374940:intron | 45.0% |
| CTTGCAGTGGCAACATACAA+GGG | - | chr3_1:74485788-74485807 | None:intergenic | 45.0% | |
| ! | GATGGTCGAGTTTTTGTGCT+AGG | + | chr3_1:74486019-74486038 | Msa0374940:CDS | 45.0% |
| ! | TCGAGTTTTTGTGCTAGGGT+GGG | + | chr3_1:74486024-74486043 | Msa0374940:CDS | 45.0% |
| TTGTGCGAAGTTGTGTTGCA+TGG | + | chr3_1:74486090-74486109 | Msa0374940:CDS | 45.0% | |
| GAAGAAGTTGAGGAACACCT+TGG | - | chr3_1:74484479-74484498 | None:intergenic | 45.0% | |
| CTCTTCCTCTATGATCCCTT+AGG | - | chr3_1:74484780-74484799 | None:intergenic | 45.0% | |
| GGGATCATAGAGGAAGAGAT+TGG | + | chr3_1:74484782-74484801 | Msa0374940:CDS | 45.0% | |
| CGCGTCAAAGCACATTCTAT+TGG | + | chr3_1:74484805-74484824 | Msa0374940:CDS | 45.0% | |
| ! | AAGCACATTCTATTGGTGGC+AGG | + | chr3_1:74484812-74484831 | Msa0374940:CDS | 45.0% |
| !! | GACAAAGGTAATGGATGAGG+AGG | + | chr3_1:74484969-74484988 | Msa0374940:CDS | 45.0% |
| TATGTTGGAGGATGAGGAAG+AGG | + | chr3_1:74485002-74485021 | Msa0374940:CDS | 45.0% | |
| ! | GAGGAAGGTGATGATGATGA+TGG | + | chr3_1:74485021-74485040 | Msa0374940:CDS | 45.0% |
| !! | GGTGATGATGATGATGGTGA+TGG | + | chr3_1:74485027-74485046 | Msa0374940:CDS | 45.0% |
| !! | GATGATGATGATGGTGATGG+TGG | + | chr3_1:74485030-74485049 | Msa0374940:CDS | 45.0% |
| CGACGGTTATACAATGGTAG+AGG | + | chr3_1:74485068-74485087 | Msa0374940:CDS | 45.0% | |
| ! | GATTGTGGTTTAGGGAGCAT+TGG | + | chr3_1:74485352-74485371 | Msa0374940:intron | 45.0% |
| CTTGCAGTGGCAACATACAA+GGG | - | chr3_1:74485788-74485807 | None:intergenic | 45.0% | |
| ! | GATGGTCGAGTTTTTGTGCT+AGG | + | chr3_1:74486019-74486038 | Msa0374940:CDS | 45.0% |
| ! | TCGAGTTTTTGTGCTAGGGT+GGG | + | chr3_1:74486024-74486043 | Msa0374940:CDS | 45.0% |
| TTGTGCGAAGTTGTGTTGCA+TGG | + | chr3_1:74486090-74486109 | Msa0374940:CDS | 45.0% | |
| !! | AAAAACTTAATAATAATAAT+CGG | - | chr3_1:74484567-74484586 | None:intergenic | 5.0% |
| !! | AAAAACTTAATAATAATAAT+CGG | - | chr3_1:74484567-74484586 | None:intergenic | 5.0% |
| ! | ACCTCTTCTTTTCCTGCCCT+TGG | + | chr3_1:74484014-74484033 | Msa0374940:intron | 50.0% |
| GAAGTAAAGTAGCCAAGGGC+AGG | - | chr3_1:74484029-74484048 | None:intergenic | 50.0% | |
| TTGGAGGATGAGGAAGAGGA+AGG | + | chr3_1:74485006-74485025 | Msa0374940:CDS | 50.0% | |
| CGACGACGACGGTTATACAA+TGG | + | chr3_1:74485062-74485081 | Msa0374940:CDS | 50.0% | |
| CCTTGCAGTGGCAACATACA+AGG | - | chr3_1:74485789-74485808 | None:intergenic | 50.0% | |
| CCTTGTATGTTGCCACTGCA+AGG | + | chr3_1:74485786-74485805 | Msa0374940:CDS | 50.0% | |
| ! | GTCGAGTTTTTGTGCTAGGG+TGG | + | chr3_1:74486023-74486042 | Msa0374940:CDS | 50.0% |
| TGCGAAGTTGTGTTGCATGG+AGG | + | chr3_1:74486093-74486112 | Msa0374940:CDS | 50.0% | |
| ! | ACCTCTTCTTTTCCTGCCCT+TGG | + | chr3_1:74484014-74484033 | Msa0374940:intron | 50.0% |
| GAAGTAAAGTAGCCAAGGGC+AGG | - | chr3_1:74484029-74484048 | None:intergenic | 50.0% | |
| TTGGAGGATGAGGAAGAGGA+AGG | + | chr3_1:74485006-74485025 | Msa0374940:CDS | 50.0% | |
| CGACGACGACGGTTATACAA+TGG | + | chr3_1:74485062-74485081 | Msa0374940:CDS | 50.0% | |
| CCTTGCAGTGGCAACATACA+AGG | - | chr3_1:74485789-74485808 | None:intergenic | 50.0% | |
| CCTTGTATGTTGCCACTGCA+AGG | + | chr3_1:74485786-74485805 | Msa0374940:CDS | 50.0% | |
| ! | GTCGAGTTTTTGTGCTAGGG+TGG | + | chr3_1:74486023-74486042 | Msa0374940:CDS | 50.0% |
| TGCGAAGTTGTGTTGCATGG+AGG | + | chr3_1:74486093-74486112 | Msa0374940:CDS | 50.0% | |
| GCCAAGGGCAGGAAAAGAAG+AGG | - | chr3_1:74484018-74484037 | None:intergenic | 55.0% | |
| GAGGAACACCTTGGCAGTGT+TGG | - | chr3_1:74484470-74484489 | None:intergenic | 55.0% | |
| GCCAAGGGCAGGAAAAGAAG+AGG | - | chr3_1:74484018-74484037 | None:intergenic | 55.0% | |
| GAGGAACACCTTGGCAGTGT+TGG | - | chr3_1:74484470-74484489 | None:intergenic | 55.0% | |
| GGAGATGACGACGACGACGA+CGG | + | chr3_1:74485051-74485070 | Msa0374940:CDS | 60.0% | |
| GGAGATGACGACGACGACGA+CGG | + | chr3_1:74485051-74485070 | Msa0374940:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 74483906 | 74486126 | 74483906 | ID=Msa0374940;Name=Msa0374940 |
| chr3_1 | mRNA | 74483906 | 74486126 | 74483906 | ID=Msa0374940-mRNA-1;Parent=Msa0374940;Name=Msa0374940-mRNA-1;_AED=0.19;_eAED=0.23;_QI=0|0|0|0.85|0.5|0.57|7|0|301 |
| chr3_1 | exon | 74483906 | 74483927 | 74483906 | ID=Msa0374940-mRNA-1:exon:17232;Parent=Msa0374940-mRNA-1 |
| chr3_1 | exon | 74484452 | 74484534 | 74484452 | ID=Msa0374940-mRNA-1:exon:17233;Parent=Msa0374940-mRNA-1 |
| chr3_1 | exon | 74484715 | 74484924 | 74484715 | ID=Msa0374940-mRNA-1:exon:17234;Parent=Msa0374940-mRNA-1 |
| chr3_1 | exon | 74484934 | 74485123 | 74484934 | ID=Msa0374940-mRNA-1:exon:17235;Parent=Msa0374940-mRNA-1 |
| chr3_1 | exon | 74485365 | 74485483 | 74485365 | ID=Msa0374940-mRNA-1:exon:17236;Parent=Msa0374940-mRNA-1 |
| chr3_1 | exon | 74485730 | 74485807 | 74485730 | ID=Msa0374940-mRNA-1:exon:17237;Parent=Msa0374940-mRNA-1 |
| chr3_1 | exon | 74485923 | 74486126 | 74485923 | ID=Msa0374940-mRNA-1:exon:17238;Parent=Msa0374940-mRNA-1 |
| chr3_1 | CDS | 74483906 | 74483927 | 74483906 | ID=Msa0374940-mRNA-1:cds;Parent=Msa0374940-mRNA-1 |
| chr3_1 | CDS | 74484452 | 74484534 | 74484452 | ID=Msa0374940-mRNA-1:cds;Parent=Msa0374940-mRNA-1 |
| chr3_1 | CDS | 74484715 | 74484924 | 74484715 | ID=Msa0374940-mRNA-1:cds;Parent=Msa0374940-mRNA-1 |
| chr3_1 | CDS | 74484934 | 74485123 | 74484934 | ID=Msa0374940-mRNA-1:cds;Parent=Msa0374940-mRNA-1 |
| chr3_1 | CDS | 74485365 | 74485483 | 74485365 | ID=Msa0374940-mRNA-1:cds;Parent=Msa0374940-mRNA-1 |
| chr3_1 | CDS | 74485730 | 74485807 | 74485730 | ID=Msa0374940-mRNA-1:cds;Parent=Msa0374940-mRNA-1 |
| chr3_1 | CDS | 74485923 | 74486126 | 74485923 | ID=Msa0374940-mRNA-1:cds;Parent=Msa0374940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
