AlfalfaGEDB | Msa0375170

M. sativa cultivar zhongmu-4 / Msa0375170

KEGG: -
GO: GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005975 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0032502 GO:0032535 GO:0032989 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055082 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0140096 GO:1901564 GO:1901700
PFAM: PF13947.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0375170	KEH35372.1	96.423	699	25	0	1	699	23	721	0.0	1405

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0375170	sp\|Q9LMN8\|WAK3_ARATH	45.035	715	336	18	8	696	7	690	0.0	594

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0375170	A0A072V0R9	96.423	699	25	0	1	699	23	721	0.0	1405

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0375170	MtrunA17_Chr3g0125461	96.423	699	25	0	1	699	23	721	1405
Msa0375170	MtrunA17_Chr3g0125431	74.646	706	169	6	1	699	1	703	1078
Msa0375170	MtrunA17_Chr2g0279661	74.294	708	171	5	1	699	3	708	1055
Msa0375170	MtrunA17_Chr3g0125441	71.012	721	185	6	1	699	15	733	1054
Msa0375170	MtrunA17_Chr3g0125451	71.064	705	191	6	1	699	1	698	999
Msa0375170	MtrunA17_Chr3g0125471	66.572	706	161	7	1	699	1	638	906
Msa0375170	MtrunA17_Chr1g0158201	47.673	709	328	17	7	699	9	690	623
Msa0375170	MtrunA17_Chr1g0158261	47.857	700	319	17	13	699	20	686	616
Msa0375170	MtrunA17_Chr1g0158251	46.733	704	340	16	8	699	15	695	608
Msa0375170	MtrunA17_Chr1g0148501	45.646	712	350	16	9	699	13	708	594

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0375170	AT1G21240.1	45.035	715	336	18	8	696	7	690	0.0	594
Msa0375170	AT1G21230.1	45.288	711	346	21	1	696	1	683	0.0	592
Msa0375170	AT1G21270.1	45.272	698	348	18	8	696	7	679	0.0	591
Msa0375170	AT1G21250.1	44.444	711	353	19	1	696	1	684	0.0	573
Msa0375170	AT1G21210.1	43.220	708	362	15	7	698	4	687	0.0	560
Msa0375170	AT1G69730.1	37.802	746	369	20	9	694	11	721	1.24e-150	457
Msa0375170	AT1G16130.1	38.082	709	398	17	3	694	5	689	3.57e-149	452
Msa0375170	AT1G79670.1	38.741	715	379	18	8	694	11	694	8.92e-148	448
Msa0375170	AT1G16260.1	38.301	718	360	21	1	692	1	661	2.93e-146	443
Msa0375170	AT1G16260.2	38.301	718	360	21	1	692	1	661	2.93e-146	443

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Find 157 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAACTGCTGGAGTCC+TGG	0.464775	3_1:-74755338	Msa0375170:CDS
AAAAGATAGGGAGGCATGGA+AGG	0.521353	3_1:-74755729	Msa0375170:CDS
AAAAGTATATGTTACGATGC+AGG	0.534521	3_1:-74756997	Msa0375170:CDS
AAAGTTCTTCTTCTTTAGCT+TGG	0.415124	3_1:+74757107	None:intergenic
AAATGCTTTGATGGATATAG+GGG	0.569660	3_1:-74756949	Msa0375170:CDS
AAATGGAAAAGGGATGGTGA+TGG	0.591966	3_1:+74757674	None:intergenic
AAATTCTTACCACATTTCTA+TGG	0.325134	3_1:+74755491	None:intergenic
AACCTGTCAGCAAGCTCAGA+AGG	0.562157	3_1:-74757052	Msa0375170:CDS
AACTAACCGATCTTCTTTCA+TGG	0.349671	3_1:+74754991	None:intergenic
AAGAAACAAAGTACATCGCA+AGG	0.636092	3_1:+74755014	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTTCTTCTTCTTTAGCT+TGG	+	chr3_1:74755514-74755533	None:intergenic	30.0%
TGAAAAAATCCAATTTAGCC+GGG	+	chr3_1:74755825-74755844	None:intergenic	30.0%
TTTCTGCTTTAATGAAGTGA+GGG	-	chr3_1:74756212-74756231	Msa0375170:CDS	30.0%
TAATGCAAAAGGCAAATCAA+AGG	+	chr3_1:74756251-74756270	None:intergenic	30.0%
CCTGAAAAACTTAATGCAAA+AGG	+	chr3_1:74756262-74756281	None:intergenic	30.0%
ACACTTGAGAAACATTTCAT+TGG	-	chr3_1:74756642-74756661	Msa0375170:intron	30.0%
TGGAAGCAATTATGCTTATT+TGG	-	chr3_1:74756794-74756813	Msa0375170:intron	30.0%
GAAGGAAATATTATAGGCAA+AGG	-	chr3_1:74756975-74756994	Msa0375170:CDS	30.0%
TCAAATCAACCATAGAAATG+TGG	-	chr3_1:74757118-74757137	Msa0375170:CDS	30.0%
TGATCATAAACAGTTCCATT+TGG	+	chr3_1:74757203-74757222	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	74754835	74757805	74754835	ID=Msa0375170;Name=Msa0375170
chr3_1	mRNA	74754835	74757805	74754835	ID=Msa0375170-mRNA-1;Parent=Msa0375170;Name=Msa0375170-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0\|0\|0\|1\|1\|1\|3\|0\|699
chr3_1	exon	74756920	74757805	74756920	ID=Msa0375170-mRNA-1:exon:17462;Parent=Msa0375170-mRNA-1
chr3_1	exon	74756088	74756258	74756088	ID=Msa0375170-mRNA-1:exon:17461;Parent=Msa0375170-mRNA-1
chr3_1	exon	74754835	74755877	74754835	ID=Msa0375170-mRNA-1:exon:17460;Parent=Msa0375170-mRNA-1
chr3_1	CDS	74756920	74757805	74756920	ID=Msa0375170-mRNA-1:cds;Parent=Msa0375170-mRNA-1
chr3_1	CDS	74756088	74756258	74756088	ID=Msa0375170-mRNA-1:cds;Parent=Msa0375170-mRNA-1
chr3_1	CDS	74754835	74755877	74754835	ID=Msa0375170-mRNA-1:cds;Parent=Msa0375170-mRNA-1

Gene Sequence

>Msa0375170

ATGGCTGTGCACTCAAAACAGATGCTTCTGATGTTGCTTCTTGTTGTTCTTTATACAAAAGTAGCAACTCAACCTATGTCACTACCAAACTGTCCAGAAAAGTGTGGTTCCATCACCATCCCTTTTCCATTTGGATTCACCGAGGGTTGTTTTCTCGACAGCACATTCCTTATCAATTGCAACAAAACATCAAACTCAAAAAAACTCGTACCTTTCTTACCAAACACTAACCAAACGGTCTTAAATATCACACTTAACGGTGAACTACGCGTTGCATGGCCAGTAGCCAAGGATTGCTATTCAAAAAATAGCATACGAACGGAACAAACAATTCAGTATATCAACATGACACATTTTCACGTCTCTCCCACTCGAAACAAGTTGGTAGCAGTTGGCTGTGATACATCTGGAATACTCGGAGTAATTGATTCTGAAGGAAACAACTACACCTCTGGATGTTTGGCTTGGTGCAACAGGCACGCTGATCTCGTTGCCAATGAGTCTTGTTCTGGTCCTGGTTGTTGCCAGATTTCGGTACCCCAAGGTCGTGTCTTAACGGAAGTATTCTATTTTCCTCTTAGCTCGTCGAGTCACTCAGCAGTATATGACTTCAATCCGTGTGGATATGTTTTTATTGTTGAAAATGGAGCCTACATTTTCGCAACCACAGACCTCCCCAAGCTAAAGAAGAAGAACTTTCCTGCGTTGTTGGACTGGGCAGTAGGAAACCAAACCTGTCAGCAAGCTCAGAAGGATCTTTCAAGTAATTATGCTTGTAAGGCAGACAAAAGTATATGTTACGATGCAGGAACCATCAAATCTGGTTACCTTTGCAAATGCTTTGATGGATATAGGGGAAATCCTTACCTCATTCATGGTTGTGAAGATATTAATGAATGCACGGAGTCTAATGACTGTGTTCAAGAGGCAACATGTGACAATCTTCCTGGAAGCTACCATTGTTTATGCCCGAAAGGACATGAGGGAGACGGAAAGATGAATGGCACAAAATGCAGTCCAAAATCAAGGAAAGATATCATATACATCATTGCATTGAGTGTCTGCGTAGGCCTCGTAGCACTACTGGTTGGAAGCAATTATGCTTATTTGGCATTGAAAAAAAGAAAGCTCGATAAACTTAAAGAACAATTTTTTCAACAAAATGGTGGCTTACTGTTGCAGCAAAAGATAGGGAGGCATGGAAGGTCAAACGAAACACCTAGAGTGTTCACTGTTGAGGAGCTAAATGAAGCAACTAACAATTTTGATGAAGGAAATATTATAGGCAAAGGTGCTCAGGGAACAGTTTACAAAGGAGTTTTGCAAGATAAAAGTGTTGTAGCAATAAAAAAGTCCAAAATCAATGACCAAAACCAGATTGAGCCATTCATCAATGAAGTGGTCGTTCTTTCTCAAATCAACCATAGAAATGTGGTAAGAATTTTGGGTTGTTGTTTAGAAACAGAAGTTCCATTGCTTGTTTATGAATTCATTCCAAATGGAACTGTTTATGATCATCTCCATGATCAAAACCAATCTATAAAGCTGACATGGAAAACAAGGTTAAGAATAGCAAAAGAAACTGCTGGAGTCCTGGCATACTTACATTCTTCTGCTTCTACTCCAATCATTCATAGAGATATAAAATCTACAAACATCCTCCTAGATGGCAATCTCATTGCAAAGGTTTCTGATTTTGGAGCATCAAAGATTGTTCCTCTTAATCACAGTCTGATAACCACTCTAGTGCAAGGGACATTGGGGTATCTCGACCCAGAATACTTGCAAACTAGCGTGTTAACGGAGAAGAGTGATGTCTACAGTTTTGGGGTTGTCCTAGCAGAGCTACTGACAGGAAAGAAAGCACTATGTTATAGCAGACCAGTGGTAGAAAGAAGCCTTGCGATGTACTTTGTTTCTTCCATGAAAGAAGATCGGTTAGTTCATATTCTGGACAGCAACATTGATGAGGGAAATGTTGAGCATCTAAAAGAAGTTGCCCTAATTGCAGAAAGGTGTTTAAGGGTGAACAGTGAGGAAAGACCATCCATGAAAGAAGTGGCAATGGGACTGGAAGGAATATTAGTTATTGAAGAGTAG

Protein sequence

>Msa0375170

MAVHSKQMLLMLLLVVLYTKVATQPMSLPNCPEKCGSITIPFPFGFTEGCFLDSTFLINCNKTSNSKKLVPFLPNTNQTVLNITLNGELRVAWPVAKDCYSKNSIRTEQTIQYINMTHFHVSPTRNKLVAVGCDTSGILGVIDSEGNNYTSGCLAWCNRHADLVANESCSGPGCCQISVPQGRVLTEVFYFPLSSSSHSAVYDFNPCGYVFIVENGAYIFATTDLPKLKKKNFPALLDWAVGNQTCQQAQKDLSSNYACKADKSICYDAGTIKSGYLCKCFDGYRGNPYLIHGCEDINECTESNDCVQEATCDNLPGSYHCLCPKGHEGDGKMNGTKCSPKSRKDIIYIIALSVCVGLVALLVGSNYAYLALKKRKLDKLKEQFFQQNGGLLLQQKIGRHGRSNETPRVFTVEELNEATNNFDEGNIIGKGAQGTVYKGVLQDKSVVAIKKSKINDQNQIEPFINEVVVLSQINHRNVVRILGCCLETEVPLLVYEFIPNGTVYDHLHDQNQSIKLTWKTRLRIAKETAGVLAYLHSSASTPIIHRDIKSTNILLDGNLIAKVSDFGASKIVPLNHSLITTLVQGTLGYLDPEYLQTSVLTEKSDVYSFGVVLAELLTGKKALCYSRPVVERSLAMYFVSSMKEDRLVHILDSNIDEGNVEHLKEVALIAERCLRVNSEERPSMKEVAMGLEGILVIEE*