Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376540 | XP_024633826.2 | 64.784 | 301 | 65 | 4 | 1 | 300 | 1 | 261 | 5.82e-132 | 385 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376540 | sp|Q9LVU8|RKD4_ARATH | 52.381 | 105 | 50 | 0 | 193 | 297 | 148 | 252 | 7.72e-31 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376540 | G7J7G0 | 64.784 | 301 | 65 | 4 | 1 | 300 | 1 | 261 | 2.78e-132 | 385 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0376540 | TF | RWP-RK |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376540 | MtrunA17_Chr3g0127001 | 64.784 | 301 | 65 | 4 | 1 | 300 | 1 | 261 | 5.36e-136 | 385 |
| Msa0376540 | MtrunA17_Chr1g0182631 | 64.338 | 272 | 58 | 5 | 30 | 300 | 1 | 234 | 8.24e-118 | 338 |
| Msa0376540 | MtrunA17_Chr3g0092141 | 47.321 | 112 | 53 | 1 | 193 | 298 | 59 | 170 | 7.13e-29 | 109 |
| Msa0376540 | MtrunA17_Chr4g0060761 | 45.370 | 108 | 50 | 1 | 198 | 296 | 160 | 267 | 4.20e-27 | 107 |
| Msa0376540 | MtrunA17_Chr5g0406901 | 37.719 | 114 | 58 | 1 | 193 | 293 | 201 | 314 | 2.98e-19 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376540 | AT5G53040.1 | 52.381 | 105 | 50 | 0 | 193 | 297 | 148 | 252 | 7.84e-32 | 119 |
| Msa0376540 | AT5G66990.1 | 49.550 | 111 | 45 | 1 | 198 | 297 | 164 | 274 | 5.28e-31 | 117 |
| Msa0376540 | AT1G18790.1 | 44.094 | 127 | 54 | 2 | 178 | 294 | 120 | 239 | 8.37e-28 | 108 |
| Msa0376540 | AT1G74480.1 | 43.443 | 122 | 59 | 1 | 179 | 290 | 121 | 242 | 6.95e-27 | 107 |
| Msa0376540 | AT4G35590.2 | 33.824 | 136 | 70 | 2 | 179 | 294 | 171 | 306 | 3.59e-17 | 80.9 |
| Msa0376540 | AT4G35590.1 | 33.824 | 136 | 70 | 2 | 179 | 294 | 221 | 356 | 5.61e-17 | 80.9 |
| Msa0376540 | AT5G16100.2 | 37.113 | 97 | 53 | 1 | 181 | 269 | 342 | 438 | 4.24e-12 | 66.6 |
Find 55 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGGTAAAGCAACATTTA+AGG | 0.169846 | 3_1:-76659338 | None:intergenic |
| CATTGCAATTTGATGATATA+AGG | 0.198698 | 3_1:+76659659 | Msa0376540:CDS |
| TCGGTGTAATGCCCCATTTC+AGG | 0.239025 | 3_1:-76659355 | None:intergenic |
| AAATGTTGCTTTACCTGAAA+TGG | 0.239415 | 3_1:+76659342 | Msa0376540:CDS |
| TCTTCATTCAATTCCATTTC+AGG | 0.242189 | 3_1:-76660145 | None:intergenic |
| TTGTAGCCTTGAGCGATTTC+AGG | 0.264499 | 3_1:-76654718 | None:intergenic |
| GCCTTGAGCGATTTCAGGTT+GGG | 0.343692 | 3_1:-76654713 | None:intergenic |
| AACTACTTTGATCAAGGTAT+TGG | 0.343714 | 3_1:-76659297 | None:intergenic |
| TCAGGTAAAGCAACATTTAA+GGG | 0.355156 | 3_1:-76659337 | None:intergenic |
| AATGTTGCTTTACCTGAAAT+GGG | 0.356567 | 3_1:+76659343 | Msa0376540:CDS |
| TTGTGAACAAACAAGAGAAA+TGG | 0.359147 | 3_1:+76659449 | Msa0376540:CDS |
| ATGATTTCATTGAGTTTGAT+TGG | 0.364629 | 3_1:+76659191 | Msa0376540:CDS |
| TGACCTCTTCCTTATGATAC+TGG | 0.365686 | 3_1:-76659632 | None:intergenic |
| GCTTACTTGTCTGTGTTGTT+TGG | 0.372451 | 3_1:-76654766 | None:intergenic |
| AGCAATACTCTTCCCTTTGT+CGG | 0.387658 | 3_1:-76659374 | None:intergenic |
| GTTGAGGCTTCCAAGAAAAC+AGG | 0.393183 | 3_1:+76659409 | Msa0376540:CDS |
| CCCTGCATCTATTCTTCAAA+AGG | 0.394587 | 3_1:-76659738 | None:intergenic |
| GTTAGAGAAACTTCCTGAAA+TGG | 0.395826 | 3_1:+76660132 | Msa0376540:CDS |
| GAGTGGATTTGTTGAAGCTT+CGG | 0.430431 | 3_1:+76659513 | Msa0376540:CDS |
| TGTTGTGTGATGCAGGAAAT+GGG | 0.433682 | 3_1:+76660067 | Msa0376540:intron |
| GGCAAACGAGGTTGCTATGA+TGG | 0.435987 | 3_1:+76660093 | Msa0376540:CDS |
| TGTGAACAAACAAGAGAAAT+GGG | 0.437906 | 3_1:+76659450 | Msa0376540:CDS |
| TGTACTCATCGACAACCTTA+AGG | 0.457457 | 3_1:+76659807 | Msa0376540:CDS |
| AACTCAATGAAATCATCAAA+TGG | 0.477184 | 3_1:-76659184 | None:intergenic |
| AAATCGCTCAAGGCTACAAC+TGG | 0.479818 | 3_1:+76654722 | Msa0376540:CDS |
| CTGCTACTTGGCAATGGTAG+TGG | 0.480934 | 3_1:-76659601 | None:intergenic |
| CTGGTACTAGTACTGCTACT+TGG | 0.482625 | 3_1:-76659613 | None:intergenic |
| TGATTTCATTGAGTTTGATT+GGG | 0.486276 | 3_1:+76659192 | Msa0376540:CDS |
| GGGAGCTCAACATCACTAGA+TGG | 0.489772 | 3_1:+76659758 | Msa0376540:CDS |
| AGGTTGAAGCTCAAGGGTTG+AGG | 0.489859 | 3_1:-76660228 | None:intergenic |
| TGTGATGCAGGAAATGGGTT+TGG | 0.499818 | 3_1:+76660072 | Msa0376540:intron |
| GTACTAGTACCAGTATCATA+AGG | 0.506441 | 3_1:+76659623 | Msa0376540:CDS |
| TTGTGAAGAAAGAGGTTGAA+GGG | 0.507686 | 3_1:+76659563 | Msa0376540:CDS |
| TCTCAAAACTACTTTGATCA+AGG | 0.511922 | 3_1:-76659303 | None:intergenic |
| CTATGATGGAGAAGAAGAAA+AGG | 0.520048 | 3_1:+76660107 | Msa0376540:CDS |
| AAGATCATTGAACCACCCAT+TGG | 0.537266 | 3_1:-76659251 | None:intergenic |
| AGCCTTGAGCGATTTCAGGT+TGG | 0.544838 | 3_1:-76654714 | None:intergenic |
| TTTGTGAAGAAAGAGGTTGA+AGG | 0.545050 | 3_1:+76659562 | Msa0376540:CDS |
| GGTTGAAGCTCAAGGGTTGA+GGG | 0.549829 | 3_1:-76660227 | None:intergenic |
| TGTGAAGAAAGAGGTTGAAG+GGG | 0.555743 | 3_1:+76659564 | Msa0376540:CDS |
| ATGGGGCATTACACCGACAA+AGG | 0.558093 | 3_1:+76659361 | Msa0376540:CDS |
| TGGGGCATTACACCGACAAA+GGG | 0.567564 | 3_1:+76659362 | Msa0376540:CDS |
| CCTGCATCTATTCTTCAAAA+GGG | 0.589493 | 3_1:-76659737 | None:intergenic |
| ACATTGAGTGCTGCTGAGAG+TGG | 0.594289 | 3_1:+76659496 | Msa0376540:CDS |
| GTACCAGTATCATAAGGAAG+AGG | 0.604409 | 3_1:+76659629 | Msa0376540:CDS |
| GGGAAGAGTATTGCTGAGAG+TGG | 0.605279 | 3_1:+76659382 | Msa0376540:CDS |
| GGAAATGGGTTTGGCAAACG+AGG | 0.606744 | 3_1:+76660081 | Msa0376540:intron |
| CTAGTACTGCTACTTGGCAA+TGG | 0.610956 | 3_1:-76659607 | None:intergenic |
| ACCCAACCTGAAATCGCTCA+AGG | 0.612787 | 3_1:+76654712 | Msa0376540:CDS |
| ATGTTGCTTTACCTGAAATG+GGG | 0.616338 | 3_1:+76659344 | Msa0376540:CDS |
| GATGGCCTCACAGAAAATTG+AGG | 0.623093 | 3_1:+76659776 | Msa0376540:CDS |
| ATGAAGAAATCAAGAAGCTG+AGG | 0.626377 | 3_1:+76660161 | Msa0376540:CDS |
| GCTGCTAAGAAAATGAATGT+TGG | 0.631864 | 3_1:+76659709 | Msa0376540:CDS |
| GCACTCAATGTCAATGACAA+TGG | 0.653270 | 3_1:-76659484 | None:intergenic |
| AGGTTGGGTGAAGAACTCCA+TGG | 0.704568 | 3_1:-76654698 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTAATAAAGTATATGT+GGG | - | chr3_1:76655592-76655611 | None:intergenic | 10.0% |
| !! | ATATATTAATAAAGTATATG+TGG | - | chr3_1:76655593-76655612 | None:intergenic | 10.0% |
| !! | AATAGTAAAAGTAATATTAA+AGG | - | chr3_1:76656157-76656176 | None:intergenic | 10.0% |
| !! | TATATTCAAAAAATATATGT+GGG | - | chr3_1:76656344-76656363 | None:intergenic | 10.0% |
| !! | ATATATTCAAAAAATATATG+TGG | - | chr3_1:76656345-76656364 | None:intergenic | 10.0% |
| !! | TGAATATATTAATAAAACTT+AGG | + | chr3_1:76656356-76656375 | Msa0376540:intron | 10.0% |
| !! | GTAATATATTAATAAAACTT+AGG | + | chr3_1:76656827-76656846 | Msa0376540:intron | 10.0% |
| !!! | TATGTTAATTATATTTTTCA+CGG | - | chr3_1:76657122-76657141 | None:intergenic | 10.0% |
| !! | GTTTATTATTAAATAAAGAA+AGG | + | chr3_1:76658828-76658847 | Msa0376540:intron | 10.0% |
| !! | AAAAAAAAAAGTTAAAAAAG+GGG | - | chr3_1:76659121-76659140 | None:intergenic | 10.0% |
| !! | CAAAAAAAAAAAGTTAAAAA+AGG | - | chr3_1:76659123-76659142 | None:intergenic | 10.0% |
| !!! | ATAAATAATTTTTTATCAAC+TGG | + | chr3_1:76660024-76660043 | Msa0376540:intron | 10.0% |
| !!! | ATGAGTATATGTTTATTTTA+CGG | - | chr3_1:76655539-76655558 | None:intergenic | 15.0% |
| !! | TAAATAGTTAAGGTTATAAT+AGG | - | chr3_1:76656058-76656077 | None:intergenic | 15.0% |
| !! | TAAATAGTTAAGGTTATAAT+AGG | - | chr3_1:76656058-76656077 | None:intergenic | 15.0% |
| !! | TATTTCTTAATATGTGTAAA+AGG | + | chr3_1:76656173-76656192 | Msa0376540:intron | 15.0% |
| !!! | TCTTATTTCTGAAATTTAAT+GGG | - | chr3_1:76656724-76656743 | None:intergenic | 15.0% |
| !!! | TTCTTATTTCTGAAATTTAA+TGG | - | chr3_1:76656725-76656744 | None:intergenic | 15.0% |
| !!! | ATGTTAATTATATTTTTCAC+GGG | - | chr3_1:76657121-76657140 | None:intergenic | 15.0% |
| !!! | TTCTTTACTAATTTTCAATT+CGG | - | chr3_1:76657240-76657259 | None:intergenic | 15.0% |
| !! | TTGAAAATTAGTAAAGAAAA+TGG | + | chr3_1:76657242-76657261 | Msa0376540:intron | 15.0% |
| !! | ATTTCCATAAAAAAAAACAA+CGG | + | chr3_1:76657485-76657504 | Msa0376540:intron | 15.0% |
| !!! | TTCTTATTTCTGAAATTTAA+TGG | - | chr3_1:76656725-76656744 | None:intergenic | 15.0% |
| !!! | TACGTTAATTATATTTTTCA+CGG | - | chr3_1:76658122-76658141 | None:intergenic | 15.0% |
| !! | AAAGAAGAGATATAATAAAA+TGG | + | chr3_1:76658270-76658289 | Msa0376540:intron | 15.0% |
| !! | AAGAAGAGATATAATAAAAT+GGG | + | chr3_1:76658271-76658290 | Msa0376540:intron | 15.0% |
| !! | AAAAAATTTGGAAGAAAATT+AGG | + | chr3_1:76659032-76659051 | Msa0376540:intron | 15.0% |
| !! | TAAAAATTGAATAAGAACAG+AGG | - | chr3_1:76654908-76654927 | None:intergenic | 20.0% |
| !! | TTTATCTATTACTTTGACTA+TGG | + | chr3_1:76654924-76654943 | Msa0376540:intron | 20.0% |
| !!! | ATAGTGAATTTTTTTGTCAA+TGG | + | chr3_1:76655190-76655209 | Msa0376540:intron | 20.0% |
| !!! | TGAGTATATGTTTATTTTAC+GGG | - | chr3_1:76655538-76655557 | None:intergenic | 20.0% |
| !! | ACTCGTTATAGTTATTAAAA+TGG | + | chr3_1:76655678-76655697 | Msa0376540:intron | 20.0% |
| !! | CTCGTTATAGTTATTAAAAT+GGG | + | chr3_1:76655679-76655698 | Msa0376540:intron | 20.0% |
| !!! | TCTCACTATATGTTTTTATA+CGG | - | chr3_1:76655889-76655908 | None:intergenic | 20.0% |
| !! | AAAAAAAGAGAAAGTTGTAT+TGG | - | chr3_1:76656023-76656042 | None:intergenic | 20.0% |
| !! | GAGAAAGTAATAAATAGTTA+AGG | - | chr3_1:76656068-76656087 | None:intergenic | 20.0% |
| !! | GAGAAAGTAATAAATAGTTA+AGG | - | chr3_1:76656068-76656087 | None:intergenic | 20.0% |
| !!! | TCTTATTTCTGAAATCTAAT+GGG | - | chr3_1:76656251-76656270 | None:intergenic | 20.0% |
| !!! | TTCTTATTTCTGAAATCTAA+TGG | - | chr3_1:76656252-76656271 | None:intergenic | 20.0% |
| !!! | TCTCACTATATGTTTTTTTA+CGG | - | chr3_1:76656644-76656663 | None:intergenic | 20.0% |
| !!! | TGAGTATATGTTTGTTTTAT+GGG | - | chr3_1:76656762-76656781 | None:intergenic | 20.0% |
| !!! | ATGAGTATATGTTTGTTTTA+TGG | - | chr3_1:76656763-76656782 | None:intergenic | 20.0% |
| !! | ACTAATATATATGTGAGATA+TGG | - | chr3_1:76656809-76656828 | None:intergenic | 20.0% |
| !! | AAAGAAGAGAGATAATAAAA+TGG | + | chr3_1:76657272-76657291 | Msa0376540:intron | 20.0% |
| !! | AAGAAGAGAGATAATAAAAT+GGG | + | chr3_1:76657273-76657292 | Msa0376540:intron | 20.0% |
| !! | TGTATCACTAAAAAAATCAT+TGG | - | chr3_1:76656480-76656499 | None:intergenic | 20.0% |
| !!! | TTATCCGTTGTTTTTTTTTA+TGG | - | chr3_1:76657492-76657511 | None:intergenic | 20.0% |
| !!! | ACGTTAATTATATTTTTCAC+GGG | - | chr3_1:76658121-76658140 | None:intergenic | 20.0% |
| !!! | TTCTCTACTAATTTTCAATT+CGG | - | chr3_1:76658238-76658257 | None:intergenic | 20.0% |
| !! | TTGAAAATTAGTAGAGAAAT+TGG | + | chr3_1:76658240-76658259 | Msa0376540:intron | 20.0% |
| !!! | ACGTTAATTATGTTTTTTCA+CGG | - | chr3_1:76658499-76658518 | None:intergenic | 20.0% |
| !!! | CACTAACAAGTTTTTTTTAT+AGG | - | chr3_1:76658589-76658608 | None:intergenic | 20.0% |
| !!! | TTCTCTACTAATTTTCAATT+TGG | - | chr3_1:76658238-76658257 | None:intergenic | 20.0% |
| !! | TTGAAAATTAGTAGAGAAAA+TGG | + | chr3_1:76658617-76658636 | Msa0376540:intron | 20.0% |
| !! | AAATGAAAAATGAAGAAAGT+TGG | + | chr3_1:76658659-76658678 | Msa0376540:intron | 20.0% |
| !! | AAATAAAGAAAGGTGAAAAA+AGG | + | chr3_1:76658838-76658857 | Msa0376540:intron | 20.0% |
| !! | AATAAAGAAAGGTGAAAAAA+GGG | + | chr3_1:76658839-76658858 | Msa0376540:intron | 20.0% |
| !! | AAATAACCTTAAAGTTGTAA+AGG | + | chr3_1:76659009-76659028 | Msa0376540:intron | 20.0% |
| !!! | TTTTTTCCTTTACAACTTTA+AGG | - | chr3_1:76659018-76659037 | None:intergenic | 20.0% |
| !! | AAGTTGTAAAGGAAAAAATT+TGG | + | chr3_1:76659020-76659039 | Msa0376540:intron | 20.0% |
| !! | AACATAAAGAATATACCTTA+AGG | - | chr3_1:76659825-76659844 | None:intergenic | 20.0% |
| ! | GTAAAAAACAGAACAAGTTA+GGG | - | chr3_1:76654886-76654905 | None:intergenic | 25.0% |
| ! | TATATCAATAAAAAACCCGT+TGG | - | chr3_1:76655727-76655746 | None:intergenic | 25.0% |
| !!! | CTCACTATATGTTTTTATAC+GGG | - | chr3_1:76655888-76655907 | None:intergenic | 25.0% |
| !! | TGTAAAACGACATACATTTT+GGG | - | chr3_1:76655997-76656016 | None:intergenic | 25.0% |
| !! | TTGTAAAACGACATACATTT+TGG | - | chr3_1:76655998-76656017 | None:intergenic | 25.0% |
| !!! | GTGACTATATGTTTGTTTTA+CGG | - | chr3_1:76656290-76656309 | None:intergenic | 25.0% |
| ! | TGTATCACTAAAAAACTCAT+TGG | - | chr3_1:76656951-76656970 | None:intergenic | 25.0% |
| ! | TATATCACTAAAAAACCCAT+TGG | - | chr3_1:76657321-76657340 | None:intergenic | 25.0% |
| !!! | TGAGTGTATGTTTGTTTTAT+GGG | - | chr3_1:76657753-76657772 | None:intergenic | 25.0% |
| !!! | ATGAGTGTATGTTTGTTTTA+TGG | - | chr3_1:76657754-76657773 | None:intergenic | 25.0% |
| ! | ATAATATATATGTGGGTGTA+TGG | - | chr3_1:76657800-76657819 | None:intergenic | 25.0% |
| ! | TGTATTACTAAAAAACCCAT+TGG | - | chr3_1:76657943-76657962 | None:intergenic | 25.0% |
| ! | TGTATCACTAAAAAACTCAT+TGG | - | chr3_1:76656951-76656970 | None:intergenic | 25.0% |
| !!! | CGTTAATTATGTTTTTTCAC+GGG | - | chr3_1:76658498-76658517 | None:intergenic | 25.0% |
| ! | ATAAAGAAAGGTGAAAAAAG+GGG | + | chr3_1:76658840-76658859 | Msa0376540:intron | 25.0% |
| !!! | AGTGGATTTTATTTTGATAG+TGG | + | chr3_1:76658907-76658926 | Msa0376540:intron | 25.0% |
| !!! | GTGGATTTTATTTTGATAGT+GGG | + | chr3_1:76658908-76658927 | Msa0376540:intron | 25.0% |
| ! | ATTTGGAAGAAAATTAGGTA+TGG | + | chr3_1:76659037-76659056 | Msa0376540:intron | 25.0% |
| ! | TTTGGAAGAAAATTAGGTAT+GGG | + | chr3_1:76659038-76659057 | Msa0376540:intron | 25.0% |
| !! | TATGGGTAGTTAAGTAATTT+TGG | + | chr3_1:76659055-76659074 | Msa0376540:intron | 25.0% |
| ! | AAAGTTAAAAAAGGGGAAAA+CGG | - | chr3_1:76659114-76659133 | None:intergenic | 25.0% |
| !! | TTTTAATGTGTACAGAATCA+TGG | + | chr3_1:76659153-76659172 | Msa0376540:intron | 25.0% |
| ! | AACTCAATGAAATCATCAAA+TGG | - | chr3_1:76659187-76659206 | None:intergenic | 25.0% |
| ! | ATGATTTCATTGAGTTTGAT+TGG | + | chr3_1:76659191-76659210 | Msa0376540:CDS | 25.0% |
| ! | TGATTTCATTGAGTTTGATT+GGG | + | chr3_1:76659192-76659211 | Msa0376540:CDS | 25.0% |
| ! | TGGTGTAAAAATGATTACTT+TGG | - | chr3_1:76659234-76659253 | None:intergenic | 25.0% |
| !!! | AGTAATCATTTTTACACCAA+TGG | + | chr3_1:76659235-76659254 | Msa0376540:CDS | 25.0% |
| !!! | GTAATCATTTTTACACCAAT+GGG | + | chr3_1:76659236-76659255 | Msa0376540:CDS | 25.0% |
| !! | CATTGCAATTTGATGATATA+AGG | + | chr3_1:76659659-76659678 | Msa0376540:CDS | 25.0% |
| !! | TTTGAAGTACTTAACAATGT+GGG | - | chr3_1:76659860-76659879 | None:intergenic | 25.0% |
| !!! | TTTTGAAGTACTTAACAATG+TGG | - | chr3_1:76659861-76659880 | None:intergenic | 25.0% |
| ! | TTCCTAACATTATCTTTGTT+TGG | + | chr3_1:76659881-76659900 | Msa0376540:intron | 25.0% |
| ! | ATCCAAACAAAGATAATGTT+AGG | - | chr3_1:76659886-76659905 | None:intergenic | 25.0% |
| ! | TTTCAATTGTCATTCAAAGT+GGG | - | chr3_1:76659944-76659963 | None:intergenic | 25.0% |
| ! | ATTTCAATTGTCATTCAAAG+TGG | - | chr3_1:76659945-76659964 | None:intergenic | 25.0% |
| ! | TAAAACTTGAAACTGTAGTT+TGG | + | chr3_1:76659971-76659990 | Msa0376540:intron | 25.0% |
| ! | AAAACTTGAAACTGTAGTTT+GGG | + | chr3_1:76659972-76659991 | Msa0376540:intron | 25.0% |
| !!! | ATTTTTTATCAACTGGTCAT+AGG | + | chr3_1:76660031-76660050 | Msa0376540:intron | 25.0% |
| AAAGAATGAACATCGAATCA+TGG | - | chr3_1:76654817-76654836 | None:intergenic | 30.0% | |
| GGTAAAAAACAGAACAAGTT+AGG | - | chr3_1:76654887-76654906 | None:intergenic | 30.0% | |
| ATAAAGTATATGTGGGTGTA+TGG | - | chr3_1:76655585-76655604 | None:intergenic | 30.0% | |
| ACTATAGCGACATACAATTT+GGG | - | chr3_1:76655961-76655980 | None:intergenic | 30.0% | |
| ACTCGTTGTAGTTACTAAAA+TGG | + | chr3_1:76656430-76656449 | Msa0376540:intron | 30.0% | |
| TGTAGTGTACAATTGTAACA+CGG | - | chr3_1:76656459-76656478 | None:intergenic | 30.0% | |
| !! | CATTTTAGTAACTACAACGA+GGG | - | chr3_1:76656432-76656451 | None:intergenic | 30.0% |
| CTCGTTGTAGTTACTAAAAT+GGG | + | chr3_1:76656431-76656450 | Msa0376540:intron | 30.0% | |
| CTCGTTGTAGTTACTAAAAT+AGG | + | chr3_1:76656431-76656450 | Msa0376540:intron | 30.0% | |
| TCATTGGAGTGTACAATTAA+CGG | - | chr3_1:76657450-76657469 | None:intergenic | 30.0% | |
| !! | CATTTTAGTAACTACAACGA+GGG | - | chr3_1:76656432-76656451 | None:intergenic | 30.0% |
| CTCGTTGTAGTTACTAAAAT+GGG | + | chr3_1:76656431-76656450 | Msa0376540:intron | 30.0% | |
| TTACAATTGTACACTCCAAT+GGG | + | chr3_1:76656933-76656952 | Msa0376540:intron | 30.0% | |
| TGGTAAGAAAAAGATAAGAG+AGG | + | chr3_1:76658679-76658698 | Msa0376540:intron | 30.0% | |
| !! | AAAAAGGGGTTTTAGTAAAG+TGG | + | chr3_1:76658854-76658873 | Msa0376540:intron | 30.0% |
| !! | AGTAAAGTGGATTTTGATAG+TGG | + | chr3_1:76658867-76658886 | Msa0376540:intron | 30.0% |
| !! | GTAAAGTGGATTTTGATAGT+GGG | + | chr3_1:76658868-76658887 | Msa0376540:intron | 30.0% |
| !!! | TTATTTTGATAGTGGGAAAG+AGG | + | chr3_1:76658915-76658934 | Msa0376540:intron | 30.0% |
| !! | AGTAAAGTGGATTTTGATAG+TGG | + | chr3_1:76658867-76658886 | Msa0376540:intron | 30.0% |
| !! | GTAAAGTGGATTTTGATAGT+GGG | + | chr3_1:76658868-76658887 | Msa0376540:intron | 30.0% |
| !! | AGTAAAGTGGATTTTCATAG+TGG | + | chr3_1:76658977-76658996 | Msa0376540:intron | 30.0% |
| AACTACTTTGATCAAGGTAT+TGG | - | chr3_1:76659300-76659319 | None:intergenic | 30.0% | |
| TCTCAAAACTACTTTGATCA+AGG | - | chr3_1:76659306-76659325 | None:intergenic | 30.0% | |
| TCAGGTAAAGCAACATTTAA+GGG | - | chr3_1:76659340-76659359 | None:intergenic | 30.0% | |
| TTCAGGTAAAGCAACATTTA+AGG | - | chr3_1:76659341-76659360 | None:intergenic | 30.0% | |
| !! | AAATGTTGCTTTACCTGAAA+TGG | + | chr3_1:76659342-76659361 | Msa0376540:CDS | 30.0% |
| !! | AATGTTGCTTTACCTGAAAT+GGG | + | chr3_1:76659343-76659362 | Msa0376540:CDS | 30.0% |
| !! | AAACTGATTTCCTGTTTTCT+TGG | - | chr3_1:76659422-76659441 | None:intergenic | 30.0% |
| TTGTGAACAAACAAGAGAAA+TGG | + | chr3_1:76659449-76659468 | Msa0376540:CDS | 30.0% | |
| TGTGAACAAACAAGAGAAAT+GGG | + | chr3_1:76659450-76659469 | Msa0376540:CDS | 30.0% | |
| ! | TTGAAGTACTTAACAATGTG+GGG | - | chr3_1:76659859-76659878 | None:intergenic | 30.0% |
| !! | ATTATTTTGTTGTGTGATGC+AGG | + | chr3_1:76660060-76660079 | Msa0376540:intron | 30.0% |
| TCTTCATTCAATTCCATTTC+AGG | - | chr3_1:76660148-76660167 | None:intergenic | 30.0% | |
| CATGGTTGTTGAAATGAAAC+TGG | - | chr3_1:76654799-76654818 | None:intergenic | 35.0% | |
| AGTTAGGGTGATGTAGATTA+AGG | - | chr3_1:76654871-76654890 | None:intergenic | 35.0% | |
| AATGTTCCACACATCATTCT+CGG | - | chr3_1:76655019-76655038 | None:intergenic | 35.0% | |
| TAATAAAACTTAGGCAGTCG+CGG | + | chr3_1:76655613-76655632 | Msa0376540:intron | 35.0% | |
| GTTACAATTGTACACTCCAA+CGG | + | chr3_1:76655708-76655727 | Msa0376540:intron | 35.0% | |
| TTACAATTGTACACTCCAAC+GGG | + | chr3_1:76655709-76655728 | Msa0376540:intron | 35.0% | |
| ! | AGGGAGTATATATGAGTGTA+CGG | - | chr3_1:76655934-76655953 | None:intergenic | 35.0% |
| CACTATAGCGACATACAATT+TGG | - | chr3_1:76655962-76655981 | None:intergenic | 35.0% | |
| TAATAAAACTTAGGCAGTCG+CGG | + | chr3_1:76655613-76655632 | Msa0376540:intron | 35.0% | |
| GTAGTGTACAATTGTAACAC+GGG | - | chr3_1:76656458-76656477 | None:intergenic | 35.0% | |
| !! | CCATTTTAGTAACTACAACG+AGG | - | chr3_1:76656433-76656452 | None:intergenic | 35.0% |
| CCTCGTTGTAGTTACTAAAA+TGG | + | chr3_1:76656902-76656921 | Msa0376540:intron | 35.0% | |
| TTACAACTGTACTCTCCAAT+GGG | + | chr3_1:76657303-76657322 | Msa0376540:intron | 35.0% | |
| CATTGGAGTGTACAATTAAC+GGG | - | chr3_1:76657449-76657468 | None:intergenic | 35.0% | |
| !! | CCATTTTAGTAACTACAACG+AGG | - | chr3_1:76656433-76656452 | None:intergenic | 35.0% |
| CCTCGTTGTAGTTACTAAAA+TGG | + | chr3_1:76656902-76656921 | Msa0376540:intron | 35.0% | |
| GTTACAATTGTACACTCCAA+TGG | + | chr3_1:76655708-76655727 | Msa0376540:intron | 35.0% | |
| !! | GGAAAGAGGTTTTAGTAAAG+TGG | + | chr3_1:76658889-76658908 | Msa0376540:intron | 35.0% |
| !! | GGAAAGAGGTTTTAGTAAAG+TGG | + | chr3_1:76658889-76658908 | Msa0376540:intron | 35.0% |
| !!! | TGGATTTTGATAGTGGGAAA+GGG | + | chr3_1:76658874-76658893 | Msa0376540:intron | 35.0% |
| !! | ATCATTTTTACACCAATGGG+TGG | + | chr3_1:76659239-76659258 | Msa0376540:CDS | 35.0% |
| !! | ATGTTGCTTTACCTGAAATG+GGG | + | chr3_1:76659344-76659363 | Msa0376540:CDS | 35.0% |
| ! | AAAAACTGAAAGTGGGTTTG+TGG | + | chr3_1:76659537-76659556 | Msa0376540:CDS | 35.0% |
| ! | TGTGGATTTTGTGAAGAAAG+AGG | + | chr3_1:76659555-76659574 | Msa0376540:CDS | 35.0% |
| TTTGTGAAGAAAGAGGTTGA+AGG | + | chr3_1:76659562-76659581 | Msa0376540:CDS | 35.0% | |
| TTGTGAAGAAAGAGGTTGAA+GGG | + | chr3_1:76659563-76659582 | Msa0376540:CDS | 35.0% | |
| GTACTAGTACCAGTATCATA+AGG | + | chr3_1:76659623-76659642 | Msa0376540:CDS | 35.0% | |
| GCTGCTAAGAAAATGAATGT+TGG | + | chr3_1:76659709-76659728 | Msa0376540:CDS | 35.0% | |
| CCTGCATCTATTCTTCAAAA+GGG | - | chr3_1:76659740-76659759 | None:intergenic | 35.0% | |
| !! | CCTTTTGAAGAATAGATGCA+GGG | + | chr3_1:76659738-76659757 | Msa0376540:CDS | 35.0% |
| ! | TGAAGTACTTAACAATGTGG+GGG | - | chr3_1:76659858-76659877 | None:intergenic | 35.0% |
| GAGCATTAGACTCAAATTGT+AGG | + | chr3_1:76659911-76659930 | Msa0376540:intron | 35.0% | |
| ! | CTATGATGGAGAAGAAGAAA+AGG | + | chr3_1:76660107-76660126 | Msa0376540:CDS | 35.0% |
| GTTAGAGAAACTTCCTGAAA+TGG | + | chr3_1:76660132-76660151 | Msa0376540:CDS | 35.0% | |
| ATGAAGAAATCAAGAAGCTG+AGG | + | chr3_1:76660161-76660180 | Msa0376540:CDS | 35.0% | |
| ! | GCTTACTTGTCTGTGTTGTT+TGG | - | chr3_1:76654769-76654788 | None:intergenic | 40.0% |
| ATCAACCTCGAAAGTCGTAA+CGG | - | chr3_1:76655043-76655062 | None:intergenic | 40.0% | |
| TAGCGACATACAATTTGGGA+CGG | - | chr3_1:76655957-76655976 | None:intergenic | 40.0% | |
| ! | CCCACAATGTAAGACGTTTT+GGG | - | chr3_1:76656199-76656218 | None:intergenic | 40.0% |
| CCCAAAACGTCTTACATTGT+GGG | + | chr3_1:76656196-76656215 | Msa0376540:intron | 40.0% | |
| ! | TCCCACAATGTAAGACGTTT+TGG | - | chr3_1:76656200-76656219 | None:intergenic | 40.0% |
| AAACGTCTTACATTGTGGGA+CGG | + | chr3_1:76656200-76656219 | Msa0376540:intron | 40.0% | |
| GTTACAACTGTACTCTCCAA+TGG | + | chr3_1:76657302-76657321 | Msa0376540:intron | 40.0% | |
| !!! | GGATTTTGATAGTGGGAAAG+AGG | + | chr3_1:76658875-76658894 | Msa0376540:intron | 40.0% |
| !!! | GTGGATTTTGATAGTGGGAA+AGG | + | chr3_1:76658873-76658892 | Msa0376540:intron | 40.0% |
| !!! | GGATTTTGATAGTGGGAAAG+GGG | + | chr3_1:76658875-76658894 | Msa0376540:intron | 40.0% |
| !! | GGAAAGGGGTTTTAGTAAAG+TGG | + | chr3_1:76658964-76658983 | Msa0376540:intron | 40.0% |
| AAGATCATTGAACCACCCAT+TGG | - | chr3_1:76659254-76659273 | None:intergenic | 40.0% | |
| AGCAATACTCTTCCCTTTGT+CGG | - | chr3_1:76659377-76659396 | None:intergenic | 40.0% | |
| GCACTCAATGTCAATGACAA+TGG | - | chr3_1:76659487-76659506 | None:intergenic | 40.0% | |
| !! | GAGTGGATTTGTTGAAGCTT+CGG | + | chr3_1:76659513-76659532 | Msa0376540:CDS | 40.0% |
| CTTCGGCAAAAACTGAAAGT+GGG | + | chr3_1:76659530-76659549 | Msa0376540:CDS | 40.0% | |
| TGTGAAGAAAGAGGTTGAAG+GGG | + | chr3_1:76659564-76659583 | Msa0376540:CDS | 40.0% | |
| GTACCAGTATCATAAGGAAG+AGG | + | chr3_1:76659629-76659648 | Msa0376540:CDS | 40.0% | |
| TGACCTCTTCCTTATGATAC+TGG | - | chr3_1:76659635-76659654 | None:intergenic | 40.0% | |
| !! | CCCTTTTGAAGAATAGATGC+AGG | + | chr3_1:76659737-76659756 | Msa0376540:CDS | 40.0% |
| CCCTGCATCTATTCTTCAAA+AGG | - | chr3_1:76659741-76659760 | None:intergenic | 40.0% | |
| ! | AAGCTCCTCAATTTTCTGTG+AGG | - | chr3_1:76659784-76659803 | None:intergenic | 40.0% |
| TGTACTCATCGACAACCTTA+AGG | + | chr3_1:76659807-76659826 | Msa0376540:CDS | 40.0% | |
| ! | GAAGTACTTAACAATGTGGG+GGG | - | chr3_1:76659857-76659876 | None:intergenic | 40.0% |
| TAGACTCAAATTGTAGGACC+AGG | + | chr3_1:76659917-76659936 | Msa0376540:intron | 40.0% | |
| ACTTGAAACTGTAGTTTGGG+TGG | + | chr3_1:76659975-76659994 | Msa0376540:intron | 40.0% | |
| !! | TTTGGGTGGAGCATTTTTGT+TGG | + | chr3_1:76659989-76660008 | Msa0376540:intron | 40.0% |
| TTGTTGTGTGATGCAGGAAA+TGG | + | chr3_1:76660066-76660085 | Msa0376540:intron | 40.0% | |
| TGTTGTGTGATGCAGGAAAT+GGG | + | chr3_1:76660067-76660086 | Msa0376540:intron | 40.0% | |
| ! | TTGTAGCCTTGAGCGATTTC+AGG | - | chr3_1:76654721-76654740 | None:intergenic | 45.0% |
| AAATCGCTCAAGGCTACAAC+TGG | + | chr3_1:76654722-76654741 | Msa0376540:CDS | 45.0% | |
| AGTCTTCCGAGAATGATGTG+TGG | + | chr3_1:76655010-76655029 | Msa0376540:intron | 45.0% | |
| ! | GACATACAATTTGGGACGGA+GGG | - | chr3_1:76655953-76655972 | None:intergenic | 45.0% |
| GCCCAAAACGTCTTACATTG+TGG | + | chr3_1:76656195-76656214 | Msa0376540:intron | 45.0% | |
| !!! | TGCTGAGAGTGGTTTTGTTG+AGG | + | chr3_1:76659393-76659412 | Msa0376540:CDS | 45.0% |
| GTTGAGGCTTCCAAGAAAAC+AGG | + | chr3_1:76659409-76659428 | Msa0376540:CDS | 45.0% | |
| GCTTCGGCAAAAACTGAAAG+TGG | + | chr3_1:76659529-76659548 | Msa0376540:CDS | 45.0% | |
| ! | CTAGTACTGCTACTTGGCAA+TGG | - | chr3_1:76659610-76659629 | None:intergenic | 45.0% |
| CTGGTACTAGTACTGCTACT+TGG | - | chr3_1:76659616-76659635 | None:intergenic | 45.0% | |
| GATGGCCTCACAGAAAATTG+AGG | + | chr3_1:76659776-76659795 | Msa0376540:CDS | 45.0% | |
| TTGTCATTCAAAGTGGGTCC+TGG | - | chr3_1:76659938-76659957 | None:intergenic | 45.0% | |
| ! | TGTGATGCAGGAAATGGGTT+TGG | + | chr3_1:76660072-76660091 | Msa0376540:intron | 45.0% |
| !!! | TATATATTAAATTTTAGTAT+TGG | + | chr3_1:76655306-76655325 | Msa0376540:intron | 5.0% |
| !! | TTAATATATTAATAAAACTT+AGG | + | chr3_1:76655604-76655623 | Msa0376540:intron | 5.0% |
| !!! | TAATAATTTTATTTTTATAG+AGG | - | chr3_1:76657211-76657230 | None:intergenic | 5.0% |
| !! | AGTTTATTATTAAAAAATAA+AGG | + | chr3_1:76657348-76657367 | Msa0376540:intron | 5.0% |
| !! | TATATTAATAATATATATGT+GGG | - | chr3_1:76657807-76657826 | None:intergenic | 5.0% |
| !! | ATATATTAATAATATATATG+TGG | - | chr3_1:76657808-76657827 | None:intergenic | 5.0% |
| !! | TTAATATATTAATAAAACTT+AGG | + | chr3_1:76655604-76655623 | Msa0376540:intron | 5.0% |
| !!! | TATGATTATTTTTATTTATT+AGG | - | chr3_1:76658052-76658071 | None:intergenic | 5.0% |
| !! | AAAAAAAAAAAGTTAAAAAA+GGG | - | chr3_1:76659122-76659141 | None:intergenic | 5.0% |
| ACCCAACCTGAAATCGCTCA+AGG | + | chr3_1:76654712-76654731 | Msa0376540:CDS | 50.0% | |
| !! | GCCTTGAGCGATTTCAGGTT+GGG | - | chr3_1:76654716-76654735 | None:intergenic | 50.0% |
| ! | AGCCTTGAGCGATTTCAGGT+TGG | - | chr3_1:76654717-76654736 | None:intergenic | 50.0% |
| CATTGCCGTTACGACTTTCG+AGG | + | chr3_1:76655035-76655054 | Msa0376540:intron | 50.0% | |
| ! | CGACATACAATTTGGGACGG+AGG | - | chr3_1:76655954-76655973 | None:intergenic | 50.0% |
| GTCTTACATTGTGGGACGGA+GGG | + | chr3_1:76656204-76656223 | Msa0376540:intron | 50.0% | |
| TCGGTGTAATGCCCCATTTC+AGG | - | chr3_1:76659358-76659377 | None:intergenic | 50.0% | |
| ! | ATGGGGCATTACACCGACAA+AGG | + | chr3_1:76659361-76659380 | Msa0376540:CDS | 50.0% |
| ! | TGGGGCATTACACCGACAAA+GGG | + | chr3_1:76659362-76659381 | Msa0376540:CDS | 50.0% |
| !! | GGGAAGAGTATTGCTGAGAG+TGG | + | chr3_1:76659382-76659401 | Msa0376540:CDS | 50.0% |
| ! | ACATTGAGTGCTGCTGAGAG+TGG | + | chr3_1:76659496-76659515 | Msa0376540:CDS | 50.0% |
| ! | CTGCTACTTGGCAATGGTAG+TGG | - | chr3_1:76659604-76659623 | None:intergenic | 50.0% |
| GGGAGCTCAACATCACTAGA+TGG | + | chr3_1:76659758-76659777 | Msa0376540:CDS | 50.0% | |
| ! | GGAAATGGGTTTGGCAAACG+AGG | + | chr3_1:76660081-76660100 | Msa0376540:intron | 50.0% |
| GGCAAACGAGGTTGCTATGA+TGG | + | chr3_1:76660093-76660112 | Msa0376540:CDS | 50.0% | |
| GAGATACCCGTGCTACAGCA+CGG | + | chr3_1:76655100-76655119 | Msa0376540:intron | 55.0% | |
| AGATACCCGTGCTACAGCAC+GGG | + | chr3_1:76655101-76655120 | Msa0376540:intron | 55.0% | |
| CGTCTTACATTGTGGGACGG+AGG | + | chr3_1:76656203-76656222 | Msa0376540:intron | 55.0% | |
| CGCTACCCGTGCTGTAGCAC+GGG | - | chr3_1:76655109-76655128 | None:intergenic | 65.0% | |
| GCGCTACCCGTGCTGTAGCA+CGG | - | chr3_1:76655110-76655129 | None:intergenic | 65.0% | |
| GTGCTACAGCACGGGTAGCG+CGG | + | chr3_1:76655109-76655128 | Msa0376540:intron | 65.0% | |
| TTCGCCGCGCTGTATGGCCA+CGG | + | chr3_1:76655133-76655152 | Msa0376540:intron | 65.0% | |
| AACCGAGACGCTACACGCGG+CGG | - | chr3_1:76655161-76655180 | None:intergenic | 65.0% | |
| CGCAACCGAGACGCTACACG+CGG | - | chr3_1:76655164-76655183 | None:intergenic | 65.0% | |
| GGAGCCGTGGCCATACAGCG+CGG | - | chr3_1:76655140-76655159 | None:intergenic | 70.0% | |
| CTCCGCCGCGTGTAGCGTCT+CGG | + | chr3_1:76655156-76655175 | Msa0376540:intron | 70.0% | |
| CGCGGCTTCGCCGCGCTGTA+TGG | + | chr3_1:76655127-76655146 | Msa0376540:intron | 75.0% | |
| ! | CGCTACACGCGGCGGAGCCG+TGG | - | chr3_1:76655153-76655172 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 76654700 | 76660240 | 76654700 | ID=Msa0376540;Name=Msa0376540 |
| chr3_1 | mRNA | 76654700 | 76660240 | 76654700 | ID=Msa0376540-mRNA-1;Parent=Msa0376540;Name=Msa0376540-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0|0|1|1|1|3|0|300 |
| chr3_1 | exon | 76654700 | 76654782 | 76654700 | ID=Msa0376540-mRNA-1:exon:18233;Parent=Msa0376540-mRNA-1 |
| chr3_1 | exon | 76659168 | 76659828 | 76659168 | ID=Msa0376540-mRNA-1:exon:18234;Parent=Msa0376540-mRNA-1 |
| chr3_1 | exon | 76660082 | 76660240 | 76660082 | ID=Msa0376540-mRNA-1:exon:18235;Parent=Msa0376540-mRNA-1 |
| chr3_1 | CDS | 76654700 | 76654782 | 76654700 | ID=Msa0376540-mRNA-1:cds;Parent=Msa0376540-mRNA-1 |
| chr3_1 | CDS | 76659168 | 76659828 | 76659168 | ID=Msa0376540-mRNA-1:cds;Parent=Msa0376540-mRNA-1 |
| chr3_1 | CDS | 76660082 | 76660240 | 76660082 | ID=Msa0376540-mRNA-1:cds;Parent=Msa0376540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
