Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376550 | XP_024633826.2 | 87.037 | 270 | 22 | 4 | 1 | 266 | 1 | 261 | 8.41e-168 | 474 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376550 | sp|Q9LVU8|RKD4_ARATH | 57.143 | 105 | 45 | 0 | 159 | 263 | 148 | 252 | 1.33e-33 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376550 | G7J7G0 | 87.037 | 270 | 22 | 4 | 1 | 266 | 1 | 261 | 4.01e-168 | 474 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0376550 | TF | RWP-RK |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376550 | MtrunA17_Chr3g0127001 | 87.037 | 270 | 22 | 4 | 1 | 266 | 1 | 261 | 7.73e-172 | 474 |
| Msa0376550 | MtrunA17_Chr1g0182631 | 86.250 | 240 | 24 | 3 | 30 | 266 | 1 | 234 | 9.48e-151 | 420 |
| Msa0376550 | MtrunA17_Chr4g0060761 | 52.778 | 108 | 42 | 2 | 164 | 262 | 160 | 267 | 6.42e-30 | 113 |
| Msa0376550 | MtrunA17_Chr3g0092141 | 47.321 | 112 | 53 | 1 | 159 | 264 | 59 | 170 | 1.09e-29 | 110 |
| Msa0376550 | MtrunA17_Chr5g0406901 | 38.400 | 125 | 59 | 2 | 153 | 259 | 190 | 314 | 2.61e-21 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376550 | AT5G53040.1 | 57.143 | 105 | 45 | 0 | 159 | 263 | 148 | 252 | 1.35e-34 | 125 |
| Msa0376550 | AT5G66990.1 | 53.153 | 111 | 41 | 2 | 164 | 263 | 164 | 274 | 1.16e-31 | 118 |
| Msa0376550 | AT1G18790.1 | 49.565 | 115 | 48 | 1 | 156 | 260 | 125 | 239 | 4.97e-30 | 114 |
| Msa0376550 | AT1G74480.1 | 48.182 | 110 | 47 | 1 | 157 | 256 | 133 | 242 | 6.55e-29 | 111 |
| Msa0376550 | AT4G35590.2 | 32.593 | 135 | 71 | 2 | 143 | 257 | 169 | 303 | 3.33e-17 | 80.1 |
| Msa0376550 | AT4G35590.1 | 32.593 | 135 | 71 | 2 | 143 | 257 | 219 | 353 | 5.82e-17 | 80.1 |
| Msa0376550 | AT5G16100.2 | 37.113 | 97 | 53 | 1 | 147 | 235 | 342 | 438 | 7.37e-13 | 68.2 |
Find 46 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTAGCAGCCATTGTTAA+AGG | 0.208533 | 3_1:-76664142 | None:intergenic |
| TTGGAGCCTTGAGTGATTTC+AGG | 0.214370 | 3_1:-76663269 | None:intergenic |
| CAATGTTGTCTTGCCTGAGC+TGG | 0.263848 | 3_1:+76663889 | Msa0376550:CDS |
| ATGATTTCTTTGAGTTTGAT+TGG | 0.342407 | 3_1:+76663738 | Msa0376550:CDS |
| GAAGATGTTGGAGAAACTTC+CGG | 0.360968 | 3_1:+76665070 | Msa0376550:CDS |
| GCCTTGAGTGATTTCAGGTT+GGG | 0.378542 | 3_1:-76663264 | None:intergenic |
| CAGCAATAGTCTCACCTTTG+TGG | 0.390633 | 3_1:-76663922 | None:intergenic |
| AAGATGTTGGAGAAACTTCC+GGG | 0.393818 | 3_1:+76665071 | Msa0376550:CDS |
| AGAATTGTCATTAGTTCCAT+TGG | 0.417793 | 3_1:+76664024 | Msa0376550:CDS |
| AATGTTGTCTTGCCTGAGCT+GGG | 0.419158 | 3_1:+76663890 | Msa0376550:CDS |
| TCATCATTCAAATCCATTCC+CGG | 0.427588 | 3_1:-76665089 | None:intergenic |
| TTGTGAAGAAAGAGAAGGAA+TGG | 0.429732 | 3_1:+76663993 | Msa0376550:CDS |
| CAGAAAACTGAGGAGCTTGA+TGG | 0.447810 | 3_1:+76664231 | Msa0376550:CDS |
| GTACGAGTACTAGCATCATT+AGG | 0.450426 | 3_1:+76664068 | Msa0376550:CDS |
| CTCGTACTGCTACTTGTACT+TGG | 0.454025 | 3_1:-76664052 | None:intergenic |
| GGTACTCATCGACAACCTTA+AGG | 0.457457 | 3_1:+76664252 | Msa0376550:CDS |
| GTTGGAGAAACTTCCGGGAA+TGG | 0.462988 | 3_1:+76665076 | Msa0376550:CDS |
| CCTCAAAATTATTCTGATCA+AGG | 0.463476 | 3_1:-76663850 | None:intergenic |
| TGATTTCTTTGAGTTTGATT+GGG | 0.465378 | 3_1:+76663739 | Msa0376550:CDS |
| TGTGAAGAAAGAGAAGGAAT+GGG | 0.479018 | 3_1:+76663994 | Msa0376550:CDS |
| TGTTGTGTGATGCAGGAAAA+GGG | 0.482015 | 3_1:+76665011 | Msa0376550:intron |
| AAATCACTCAAGGCTCCAAC+TGG | 0.487286 | 3_1:+76663273 | Msa0376550:CDS |
| TGGTTGTAATGCCCCAGCTC+AGG | 0.488459 | 3_1:-76663902 | None:intergenic |
| ATGATGAAATCAAGAAGCTT+AGG | 0.499327 | 3_1:+76665105 | Msa0376550:CDS |
| CTTGTACTTGGCAATGCCAA+TGG | 0.515278 | 3_1:-76664040 | None:intergenic |
| GGAGAAGCAAAAGAAGATGT+TGG | 0.518512 | 3_1:+76665058 | Msa0376550:CDS |
| GCTTCTGTGAAAACTGAAAG+TGG | 0.520217 | 3_1:+76663968 | Msa0376550:CDS |
| AACTCAAAGAAATCATCAAA+CGG | 0.523633 | 3_1:-76663731 | None:intergenic |
| GACTAAGGAAGTTGCCATGT+TGG | 0.527747 | 3_1:+76665037 | Msa0376550:CDS |
| GCAGGAAAAGGGTTTGACTA+AGG | 0.541768 | 3_1:+76665022 | Msa0376550:intron |
| AGCCTTGAGTGATTTCAGGT+TGG | 0.554392 | 3_1:-76663265 | None:intergenic |
| TTGAACATTGTGATACCAGT+TGG | 0.557847 | 3_1:-76663288 | None:intergenic |
| CTCAGGCAAGACAACATTGA+GGG | 0.564856 | 3_1:-76663885 | None:intergenic |
| AATTATTCTGATCAAGGTGT+GGG | 0.571228 | 3_1:-76663844 | None:intergenic |
| GTACTAGCATCATTAGGAAG+AGG | 0.587268 | 3_1:+76664074 | Msa0376550:CDS |
| ATGTTGTCTTGCCTGAGCTG+GGG | 0.604817 | 3_1:+76663891 | Msa0376550:CDS |
| TATTCTGATCAAGGTGTGGG+AGG | 0.607927 | 3_1:-76663841 | None:intergenic |
| ACCCAACCTGAAATCACTCA+AGG | 0.608828 | 3_1:+76663263 | Msa0376550:CDS |
| AAATTATTCTGATCAAGGTG+TGG | 0.609905 | 3_1:-76663845 | None:intergenic |
| GCAGGGAGCTCAATATCACT+AGG | 0.629741 | 3_1:+76664200 | Msa0376550:CDS |
| GCTGCTAAGAAAATGAATGT+TGG | 0.631864 | 3_1:+76664154 | Msa0376550:CDS |
| TCAGGCAAGACAACATTGAG+GGG | 0.668331 | 3_1:-76663884 | None:intergenic |
| GCTCAGGCAAGACAACATTG+AGG | 0.673994 | 3_1:-76663886 | None:intergenic |
| GGGAGCTCAATATCACTAGG+TGG | 0.701034 | 3_1:+76664203 | Msa0376550:CDS |
| CTGGGGCATTACAACCACAA+AGG | 0.704681 | 3_1:+76663908 | Msa0376550:CDS |
| GGTGGCCTCACAGAAAACTG+AGG | 0.738213 | 3_1:+76664221 | Msa0376550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACAAAACATTAAAAAA+GGG | - | chr3_1:76663668-76663687 | None:intergenic | 10.0% |
| !! | AAGTAAAAAACATAAAAAAT+TGG | - | chr3_1:76664624-76664643 | None:intergenic | 10.0% |
| !! | AAAAACAAAACATTAAAAAA+GGG | - | chr3_1:76663668-76663687 | None:intergenic | 10.0% |
| !! | AAGTAAAAAACATAAAAAAT+TGG | - | chr3_1:76664624-76664643 | None:intergenic | 10.0% |
| !! | AAAACAAAACATTAAAAAAG+GGG | - | chr3_1:76663667-76663686 | None:intergenic | 15.0% |
| !! | GAAAAACAAAACATTAAAAA+AGG | - | chr3_1:76663669-76663688 | None:intergenic | 15.0% |
| !! | AAAGAAAAAGAATATTCTTA+AGG | - | chr3_1:76664548-76664567 | None:intergenic | 15.0% |
| !! | ATTAGTTATTTATTGTCAAA+TGG | + | chr3_1:76664968-76664987 | Msa0376550:intron | 15.0% |
| !! | AAAACAAAACATTAAAAAAG+GGG | - | chr3_1:76663667-76663686 | None:intergenic | 15.0% |
| !! | GAAAAACAAAACATTAAAAA+AGG | - | chr3_1:76663669-76663688 | None:intergenic | 15.0% |
| !! | AAAGAAAAAGAATATTCTTA+AGG | - | chr3_1:76664548-76664567 | None:intergenic | 15.0% |
| !! | ATTAGTTATTTATTGTCAAA+TGG | + | chr3_1:76664968-76664987 | Msa0376550:intron | 15.0% |
| !! | CAAGAACATAAAAAAAAAGA+AGG | - | chr3_1:76663460-76663479 | None:intergenic | 20.0% |
| !!! | TCTTTTTTTTTATGTTCTTG+TGG | + | chr3_1:76663460-76663479 | Msa0376550:intron | 20.0% |
| !!! | TTTTAATGTTAACAGAATCA+TGG | + | chr3_1:76663700-76663719 | Msa0376550:intron | 20.0% |
| !! | TCATGTAAAAATGATTACTT+TGG | - | chr3_1:76663781-76663800 | None:intergenic | 20.0% |
| !! | CAAGAACATAAAAAAAAAGA+AGG | - | chr3_1:76663460-76663479 | None:intergenic | 20.0% |
| !!! | TCTTTTTTTTTATGTTCTTG+TGG | + | chr3_1:76663460-76663479 | Msa0376550:intron | 20.0% |
| !!! | TTTTAATGTTAACAGAATCA+TGG | + | chr3_1:76663700-76663719 | Msa0376550:intron | 20.0% |
| !! | TCATGTAAAAATGATTACTT+TGG | - | chr3_1:76663781-76663800 | None:intergenic | 20.0% |
| ! | AACATTAAAAAAGGGGAAAA+CGG | - | chr3_1:76663660-76663679 | None:intergenic | 25.0% |
| ! | AACTCAAAGAAATCATCAAA+CGG | - | chr3_1:76663734-76663753 | None:intergenic | 25.0% |
| !! | ATGATTTCTTTGAGTTTGAT+TGG | + | chr3_1:76663738-76663757 | Msa0376550:CDS | 25.0% |
| !! | TGATTTCTTTGAGTTTGATT+GGG | + | chr3_1:76663739-76663758 | Msa0376550:CDS | 25.0% |
| !! | TTTTGATGTTCCTTTAACAA+TGG | + | chr3_1:76664132-76664151 | Msa0376550:CDS | 25.0% |
| ! | ACAACATAGAATATACCTTA+AGG | - | chr3_1:76664270-76664289 | None:intergenic | 25.0% |
| ! | TTTCATGTACTTGAAAATGT+GGG | - | chr3_1:76664312-76664331 | None:intergenic | 25.0% |
| ! | AAACCATTATTTACTCTGTT+TGG | + | chr3_1:76664329-76664348 | Msa0376550:intron | 25.0% |
| ! | AATCCAAACAGAGTAAATAA+TGG | - | chr3_1:76664335-76664354 | None:intergenic | 25.0% |
| ! | TATGTTTCAATTATCATTCC+CGG | - | chr3_1:76664405-76664424 | None:intergenic | 25.0% |
| ! | TAAAGAGAATATAAGATGTG+TGG | - | chr3_1:76664647-76664666 | None:intergenic | 25.0% |
| ! | ACACATCTTATATTCTCTTT+AGG | + | chr3_1:76664646-76664665 | Msa0376550:intron | 25.0% |
| ! | CATTTCAAATACATCTACAA+TGG | + | chr3_1:76664671-76664690 | Msa0376550:intron | 25.0% |
| ! | AACATTAAAAAAGGGGAAAA+CGG | - | chr3_1:76663660-76663679 | None:intergenic | 25.0% |
| ! | AACTCAAAGAAATCATCAAA+CGG | - | chr3_1:76663734-76663753 | None:intergenic | 25.0% |
| !! | ATGATTTCTTTGAGTTTGAT+TGG | + | chr3_1:76663738-76663757 | Msa0376550:CDS | 25.0% |
| !! | TGATTTCTTTGAGTTTGATT+GGG | + | chr3_1:76663739-76663758 | Msa0376550:CDS | 25.0% |
| !! | TTTTGATGTTCCTTTAACAA+TGG | + | chr3_1:76664132-76664151 | Msa0376550:CDS | 25.0% |
| ! | ACAACATAGAATATACCTTA+AGG | - | chr3_1:76664270-76664289 | None:intergenic | 25.0% |
| ! | TTTCATGTACTTGAAAATGT+GGG | - | chr3_1:76664312-76664331 | None:intergenic | 25.0% |
| ! | AAACCATTATTTACTCTGTT+TGG | + | chr3_1:76664329-76664348 | Msa0376550:intron | 25.0% |
| ! | AATCCAAACAGAGTAAATAA+TGG | - | chr3_1:76664335-76664354 | None:intergenic | 25.0% |
| ! | TATGTTTCAATTATCATTCC+CGG | - | chr3_1:76664405-76664424 | None:intergenic | 25.0% |
| ! | TAAAGAGAATATAAGATGTG+TGG | - | chr3_1:76664647-76664666 | None:intergenic | 25.0% |
| ! | ACACATCTTATATTCTCTTT+AGG | + | chr3_1:76664646-76664665 | Msa0376550:intron | 25.0% |
| ! | CATTTCAAATACATCTACAA+TGG | + | chr3_1:76664671-76664690 | Msa0376550:intron | 25.0% |
| CATTGAAAGTAGTGATCATA+TGG | - | chr3_1:76663369-76663388 | None:intergenic | 30.0% | |
| GAATGAAAAACAGAAAAGGA+AGG | - | chr3_1:76663394-76663413 | None:intergenic | 30.0% | |
| AACAAAGATATGACAGGTTA+AGG | - | chr3_1:76663433-76663452 | None:intergenic | 30.0% | |
| GGAAAAAACAAAGATATGAC+AGG | - | chr3_1:76663439-76663458 | None:intergenic | 30.0% | |
| TATAATGATGTGTTGAAGTG+TGG | + | chr3_1:76663576-76663595 | Msa0376550:intron | 30.0% | |
| AATTATTCTGATCAAGGTGT+GGG | - | chr3_1:76663847-76663866 | None:intergenic | 30.0% | |
| AAATTATTCTGATCAAGGTG+TGG | - | chr3_1:76663848-76663867 | None:intergenic | 30.0% | |
| CCTCAAAATTATTCTGATCA+AGG | - | chr3_1:76663853-76663872 | None:intergenic | 30.0% | |
| ! | CCTTGATCAGAATAATTTTG+AGG | + | chr3_1:76663850-76663869 | Msa0376550:CDS | 30.0% |
| AGAATTGTCATTAGTTCCAT+TGG | + | chr3_1:76664024-76664043 | Msa0376550:CDS | 30.0% | |
| !!! | CCTGCATCTTTTTTTCAAAA+GGG | - | chr3_1:76664185-76664204 | None:intergenic | 30.0% |
| !! | CCTTTTGAAAAAAAGATGCA+GGG | + | chr3_1:76664183-76664202 | Msa0376550:CDS | 30.0% |
| TTCATGTACTTGAAAATGTG+GGG | - | chr3_1:76664311-76664330 | None:intergenic | 30.0% | |
| GTTTCATGTACTTGAAAATG+TGG | - | chr3_1:76664313-76664332 | None:intergenic | 30.0% | |
| ! | TGTACCTTAGACTAAGTTTT+TGG | + | chr3_1:76664368-76664387 | Msa0376550:intron | 30.0% |
| !! | TAAGAGTATCATACAAGTGT+AGG | - | chr3_1:76664499-76664518 | None:intergenic | 30.0% |
| ! | CTTTGTTTCGACACTTAAAT+CGG | + | chr3_1:76664564-76664583 | Msa0376550:intron | 30.0% |
| TTAGTTTCTTCGATAGTAGA+TGG | + | chr3_1:76664765-76664784 | Msa0376550:intron | 30.0% | |
| ATGATGAAATCAAGAAGCTT+AGG | + | chr3_1:76665105-76665124 | Msa0376550:CDS | 30.0% | |
| CATTGAAAGTAGTGATCATA+TGG | - | chr3_1:76663369-76663388 | None:intergenic | 30.0% | |
| GAATGAAAAACAGAAAAGGA+AGG | - | chr3_1:76663394-76663413 | None:intergenic | 30.0% | |
| AACAAAGATATGACAGGTTA+AGG | - | chr3_1:76663433-76663452 | None:intergenic | 30.0% | |
| GGAAAAAACAAAGATATGAC+AGG | - | chr3_1:76663439-76663458 | None:intergenic | 30.0% | |
| TATAATGATGTGTTGAAGTG+TGG | + | chr3_1:76663576-76663595 | Msa0376550:intron | 30.0% | |
| AATTATTCTGATCAAGGTGT+GGG | - | chr3_1:76663847-76663866 | None:intergenic | 30.0% | |
| AAATTATTCTGATCAAGGTG+TGG | - | chr3_1:76663848-76663867 | None:intergenic | 30.0% | |
| CCTCAAAATTATTCTGATCA+AGG | - | chr3_1:76663853-76663872 | None:intergenic | 30.0% | |
| ! | CCTTGATCAGAATAATTTTG+AGG | + | chr3_1:76663850-76663869 | Msa0376550:CDS | 30.0% |
| AGAATTGTCATTAGTTCCAT+TGG | + | chr3_1:76664024-76664043 | Msa0376550:CDS | 30.0% | |
| !!! | CCTGCATCTTTTTTTCAAAA+GGG | - | chr3_1:76664185-76664204 | None:intergenic | 30.0% |
| !! | CCTTTTGAAAAAAAGATGCA+GGG | + | chr3_1:76664183-76664202 | Msa0376550:CDS | 30.0% |
| TTCATGTACTTGAAAATGTG+GGG | - | chr3_1:76664311-76664330 | None:intergenic | 30.0% | |
| GTTTCATGTACTTGAAAATG+TGG | - | chr3_1:76664313-76664332 | None:intergenic | 30.0% | |
| ! | TGTACCTTAGACTAAGTTTT+TGG | + | chr3_1:76664368-76664387 | Msa0376550:intron | 30.0% |
| !! | TAAGAGTATCATACAAGTGT+AGG | - | chr3_1:76664499-76664518 | None:intergenic | 30.0% |
| ! | CTTTGTTTCGACACTTAAAT+CGG | + | chr3_1:76664564-76664583 | Msa0376550:intron | 30.0% |
| TTAGTTTCTTCGATAGTAGA+TGG | + | chr3_1:76664765-76664784 | Msa0376550:intron | 30.0% | |
| ATGATGAAATCAAGAAGCTT+AGG | + | chr3_1:76665105-76665124 | Msa0376550:CDS | 30.0% | |
| TTGAACATTGTGATACCAGT+TGG | - | chr3_1:76663291-76663310 | None:intergenic | 35.0% | |
| CGTGGAATGAAAAACAGAAA+AGG | - | chr3_1:76663398-76663417 | None:intergenic | 35.0% | |
| !!! | TGGTTTTGTGAAGAAAGAGA+AGG | + | chr3_1:76663988-76664007 | Msa0376550:CDS | 35.0% |
| TTGTGAAGAAAGAGAAGGAA+TGG | + | chr3_1:76663993-76664012 | Msa0376550:CDS | 35.0% | |
| TGTGAAGAAAGAGAAGGAAT+GGG | + | chr3_1:76663994-76664013 | Msa0376550:CDS | 35.0% | |
| TTCTTAGCAGCCATTGTTAA+AGG | - | chr3_1:76664145-76664164 | None:intergenic | 35.0% | |
| GCTGCTAAGAAAATGAATGT+TGG | + | chr3_1:76664154-76664173 | Msa0376550:CDS | 35.0% | |
| !! | CCCTTTTGAAAAAAAGATGC+AGG | + | chr3_1:76664182-76664201 | Msa0376550:CDS | 35.0% |
| !!! | CCCTGCATCTTTTTTTCAAA+AGG | - | chr3_1:76664186-76664205 | None:intergenic | 35.0% |
| TGGACCAAAAACTTAGTCTA+AGG | - | chr3_1:76664375-76664394 | None:intergenic | 35.0% | |
| CTATGAAACATCACAACTCT+AGG | + | chr3_1:76664454-76664473 | Msa0376550:intron | 35.0% | |
| ! | AAAATGTATCGACGCAACAA+TGG | + | chr3_1:76664706-76664725 | Msa0376550:intron | 35.0% |
| !! | ATTGTTTTGTTGTGTGATGC+AGG | + | chr3_1:76665004-76665023 | Msa0376550:intron | 35.0% |
| TCATCATTCAAATCCATTCC+CGG | - | chr3_1:76665092-76665111 | None:intergenic | 35.0% | |
| TTGAACATTGTGATACCAGT+TGG | - | chr3_1:76663291-76663310 | None:intergenic | 35.0% | |
| CGTGGAATGAAAAACAGAAA+AGG | - | chr3_1:76663398-76663417 | None:intergenic | 35.0% | |
| !!! | TGGTTTTGTGAAGAAAGAGA+AGG | + | chr3_1:76663988-76664007 | Msa0376550:CDS | 35.0% |
| TTGTGAAGAAAGAGAAGGAA+TGG | + | chr3_1:76663993-76664012 | Msa0376550:CDS | 35.0% | |
| TGTGAAGAAAGAGAAGGAAT+GGG | + | chr3_1:76663994-76664013 | Msa0376550:CDS | 35.0% | |
| TTCTTAGCAGCCATTGTTAA+AGG | - | chr3_1:76664145-76664164 | None:intergenic | 35.0% | |
| GCTGCTAAGAAAATGAATGT+TGG | + | chr3_1:76664154-76664173 | Msa0376550:CDS | 35.0% | |
| !! | CCCTTTTGAAAAAAAGATGC+AGG | + | chr3_1:76664182-76664201 | Msa0376550:CDS | 35.0% |
| !!! | CCCTGCATCTTTTTTTCAAA+AGG | - | chr3_1:76664186-76664205 | None:intergenic | 35.0% |
| TGGACCAAAAACTTAGTCTA+AGG | - | chr3_1:76664375-76664394 | None:intergenic | 35.0% | |
| CTATGAAACATCACAACTCT+AGG | + | chr3_1:76664454-76664473 | Msa0376550:intron | 35.0% | |
| ! | AAAATGTATCGACGCAACAA+TGG | + | chr3_1:76664706-76664725 | Msa0376550:intron | 35.0% |
| !! | ATTGTTTTGTTGTGTGATGC+AGG | + | chr3_1:76665004-76665023 | Msa0376550:intron | 35.0% |
| TCATCATTCAAATCCATTCC+CGG | - | chr3_1:76665092-76665111 | None:intergenic | 35.0% | |
| !!! | TTGTCTGTGTCGTTTTGTTG+AGG | - | chr3_1:76663314-76663333 | None:intergenic | 40.0% |
| ACGACACAGACAAGTAAGTA+TGG | + | chr3_1:76663321-76663340 | Msa0376550:intron | 40.0% | |
| CACAGACAAGTAAGTATGGT+CGG | + | chr3_1:76663325-76663344 | Msa0376550:intron | 40.0% | |
| ! | TTAAGGTACTCTACATGTCG+TGG | - | chr3_1:76663416-76663435 | None:intergenic | 40.0% |
| AACATTCTCTGTGACTTTCG+AGG | + | chr3_1:76663599-76663618 | Msa0376550:intron | 40.0% | |
| TTCGAGGTCGATATGGAATT+TGG | + | chr3_1:76663615-76663634 | Msa0376550:intron | 40.0% | |
| GCTTCTGTGAAAACTGAAAG+TGG | + | chr3_1:76663968-76663987 | Msa0376550:CDS | 40.0% | |
| GTACGAGTACTAGCATCATT+AGG | + | chr3_1:76664068-76664087 | Msa0376550:CDS | 40.0% | |
| GTACTAGCATCATTAGGAAG+AGG | + | chr3_1:76664074-76664093 | Msa0376550:CDS | 40.0% | |
| TTTCAATTATCATTCCCGGC+GGG | - | chr3_1:76664401-76664420 | None:intergenic | 40.0% | |
| GTTTCAATTATCATTCCCGG+CGG | - | chr3_1:76664402-76664421 | None:intergenic | 40.0% | |
| TTGTTGTGTGATGCAGGAAA+AGG | + | chr3_1:76665010-76665029 | Msa0376550:intron | 40.0% | |
| TGTTGTGTGATGCAGGAAAA+GGG | + | chr3_1:76665011-76665030 | Msa0376550:intron | 40.0% | |
| ! | CTTCTTTTGCTTCTCCAACA+TGG | - | chr3_1:76665054-76665073 | None:intergenic | 40.0% |
| GGAGAAGCAAAAGAAGATGT+TGG | + | chr3_1:76665058-76665077 | Msa0376550:CDS | 40.0% | |
| GAAGATGTTGGAGAAACTTC+CGG | + | chr3_1:76665070-76665089 | Msa0376550:CDS | 40.0% | |
| AAGATGTTGGAGAAACTTCC+GGG | + | chr3_1:76665071-76665090 | Msa0376550:CDS | 40.0% | |
| !!! | TTGTCTGTGTCGTTTTGTTG+AGG | - | chr3_1:76663314-76663333 | None:intergenic | 40.0% |
| ACGACACAGACAAGTAAGTA+TGG | + | chr3_1:76663321-76663340 | Msa0376550:intron | 40.0% | |
| CACAGACAAGTAAGTATGGT+CGG | + | chr3_1:76663325-76663344 | Msa0376550:intron | 40.0% | |
| ! | TTAAGGTACTCTACATGTCG+TGG | - | chr3_1:76663416-76663435 | None:intergenic | 40.0% |
| AACATTCTCTGTGACTTTCG+AGG | + | chr3_1:76663599-76663618 | Msa0376550:intron | 40.0% | |
| TTCGAGGTCGATATGGAATT+TGG | + | chr3_1:76663615-76663634 | Msa0376550:intron | 40.0% | |
| GCTTCTGTGAAAACTGAAAG+TGG | + | chr3_1:76663968-76663987 | Msa0376550:CDS | 40.0% | |
| GTACGAGTACTAGCATCATT+AGG | + | chr3_1:76664068-76664087 | Msa0376550:CDS | 40.0% | |
| GTACTAGCATCATTAGGAAG+AGG | + | chr3_1:76664074-76664093 | Msa0376550:CDS | 40.0% | |
| TTTCAATTATCATTCCCGGC+GGG | - | chr3_1:76664401-76664420 | None:intergenic | 40.0% | |
| GTTTCAATTATCATTCCCGG+CGG | - | chr3_1:76664402-76664421 | None:intergenic | 40.0% | |
| TTGTTGTGTGATGCAGGAAA+AGG | + | chr3_1:76665010-76665029 | Msa0376550:intron | 40.0% | |
| TGTTGTGTGATGCAGGAAAA+GGG | + | chr3_1:76665011-76665030 | Msa0376550:intron | 40.0% | |
| ! | CTTCTTTTGCTTCTCCAACA+TGG | - | chr3_1:76665054-76665073 | None:intergenic | 40.0% |
| GGAGAAGCAAAAGAAGATGT+TGG | + | chr3_1:76665058-76665077 | Msa0376550:CDS | 40.0% | |
| GAAGATGTTGGAGAAACTTC+CGG | + | chr3_1:76665070-76665089 | Msa0376550:CDS | 40.0% | |
| AAGATGTTGGAGAAACTTCC+GGG | + | chr3_1:76665071-76665090 | Msa0376550:CDS | 40.0% | |
| ACCCAACCTGAAATCACTCA+AGG | + | chr3_1:76663263-76663282 | Msa0376550:CDS | 45.0% | |
| !! | GCCTTGAGTGATTTCAGGTT+GGG | - | chr3_1:76663267-76663286 | None:intergenic | 45.0% |
| ! | AGCCTTGAGTGATTTCAGGT+TGG | - | chr3_1:76663268-76663287 | None:intergenic | 45.0% |
| TTGGAGCCTTGAGTGATTTC+AGG | - | chr3_1:76663272-76663291 | None:intergenic | 45.0% | |
| AAATCACTCAAGGCTCCAAC+TGG | + | chr3_1:76663273-76663292 | Msa0376550:CDS | 45.0% | |
| TGTGACTTTCGAGGTCGATA+TGG | + | chr3_1:76663608-76663627 | Msa0376550:intron | 45.0% | |
| TATTCTGATCAAGGTGTGGG+AGG | - | chr3_1:76663844-76663863 | None:intergenic | 45.0% | |
| TCAGGCAAGACAACATTGAG+GGG | - | chr3_1:76663887-76663906 | None:intergenic | 45.0% | |
| CTCAGGCAAGACAACATTGA+GGG | - | chr3_1:76663888-76663907 | None:intergenic | 45.0% | |
| AATGTTGTCTTGCCTGAGCT+GGG | + | chr3_1:76663890-76663909 | Msa0376550:CDS | 45.0% | |
| CAGCAATAGTCTCACCTTTG+TGG | - | chr3_1:76663925-76663944 | None:intergenic | 45.0% | |
| CTTGTACTTGGCAATGCCAA+TGG | - | chr3_1:76664043-76664062 | None:intergenic | 45.0% | |
| ! | CTCGTACTGCTACTTGTACT+TGG | - | chr3_1:76664055-76664074 | None:intergenic | 45.0% |
| ! | AAGCTCCTCAGTTTTCTGTG+AGG | - | chr3_1:76664229-76664248 | None:intergenic | 45.0% |
| CAGAAAACTGAGGAGCTTGA+TGG | + | chr3_1:76664231-76664250 | Msa0376550:CDS | 45.0% | |
| GGTACTCATCGACAACCTTA+AGG | + | chr3_1:76664252-76664271 | Msa0376550:CDS | 45.0% | |
| GCAGGAAAAGGGTTTGACTA+AGG | + | chr3_1:76665022-76665041 | Msa0376550:intron | 45.0% | |
| GACTAAGGAAGTTGCCATGT+TGG | + | chr3_1:76665037-76665056 | Msa0376550:CDS | 45.0% | |
| ACCCAACCTGAAATCACTCA+AGG | + | chr3_1:76663263-76663282 | Msa0376550:CDS | 45.0% | |
| !! | GCCTTGAGTGATTTCAGGTT+GGG | - | chr3_1:76663267-76663286 | None:intergenic | 45.0% |
| ! | AGCCTTGAGTGATTTCAGGT+TGG | - | chr3_1:76663268-76663287 | None:intergenic | 45.0% |
| TTGGAGCCTTGAGTGATTTC+AGG | - | chr3_1:76663272-76663291 | None:intergenic | 45.0% | |
| AAATCACTCAAGGCTCCAAC+TGG | + | chr3_1:76663273-76663292 | Msa0376550:CDS | 45.0% | |
| TGTGACTTTCGAGGTCGATA+TGG | + | chr3_1:76663608-76663627 | Msa0376550:intron | 45.0% | |
| TATTCTGATCAAGGTGTGGG+AGG | - | chr3_1:76663844-76663863 | None:intergenic | 45.0% | |
| TCAGGCAAGACAACATTGAG+GGG | - | chr3_1:76663887-76663906 | None:intergenic | 45.0% | |
| CTCAGGCAAGACAACATTGA+GGG | - | chr3_1:76663888-76663907 | None:intergenic | 45.0% | |
| AATGTTGTCTTGCCTGAGCT+GGG | + | chr3_1:76663890-76663909 | Msa0376550:CDS | 45.0% | |
| CAGCAATAGTCTCACCTTTG+TGG | - | chr3_1:76663925-76663944 | None:intergenic | 45.0% | |
| CTTGTACTTGGCAATGCCAA+TGG | - | chr3_1:76664043-76664062 | None:intergenic | 45.0% | |
| ! | CTCGTACTGCTACTTGTACT+TGG | - | chr3_1:76664055-76664074 | None:intergenic | 45.0% |
| ! | AAGCTCCTCAGTTTTCTGTG+AGG | - | chr3_1:76664229-76664248 | None:intergenic | 45.0% |
| CAGAAAACTGAGGAGCTTGA+TGG | + | chr3_1:76664231-76664250 | Msa0376550:CDS | 45.0% | |
| GGTACTCATCGACAACCTTA+AGG | + | chr3_1:76664252-76664271 | Msa0376550:CDS | 45.0% | |
| GCAGGAAAAGGGTTTGACTA+AGG | + | chr3_1:76665022-76665041 | Msa0376550:intron | 45.0% | |
| GACTAAGGAAGTTGCCATGT+TGG | + | chr3_1:76665037-76665056 | Msa0376550:CDS | 45.0% | |
| GCTCAGGCAAGACAACATTG+AGG | - | chr3_1:76663889-76663908 | None:intergenic | 50.0% | |
| CAATGTTGTCTTGCCTGAGC+TGG | + | chr3_1:76663889-76663908 | Msa0376550:CDS | 50.0% | |
| ATGTTGTCTTGCCTGAGCTG+GGG | + | chr3_1:76663891-76663910 | Msa0376550:CDS | 50.0% | |
| ! | CTGGGGCATTACAACCACAA+AGG | + | chr3_1:76663908-76663927 | Msa0376550:CDS | 50.0% |
| GCAGGGAGCTCAATATCACT+AGG | + | chr3_1:76664200-76664219 | Msa0376550:CDS | 50.0% | |
| GGGAGCTCAATATCACTAGG+TGG | + | chr3_1:76664203-76664222 | Msa0376550:CDS | 50.0% | |
| CTTGAAAATGTGGGGCAGAG+TGG | - | chr3_1:76664303-76664322 | None:intergenic | 50.0% | |
| GTTGGAGAAACTTCCGGGAA+TGG | + | chr3_1:76665076-76665095 | Msa0376550:CDS | 50.0% | |
| GCTCAGGCAAGACAACATTG+AGG | - | chr3_1:76663889-76663908 | None:intergenic | 50.0% | |
| CAATGTTGTCTTGCCTGAGC+TGG | + | chr3_1:76663889-76663908 | Msa0376550:CDS | 50.0% | |
| ATGTTGTCTTGCCTGAGCTG+GGG | + | chr3_1:76663891-76663910 | Msa0376550:CDS | 50.0% | |
| ! | CTGGGGCATTACAACCACAA+AGG | + | chr3_1:76663908-76663927 | Msa0376550:CDS | 50.0% |
| GCAGGGAGCTCAATATCACT+AGG | + | chr3_1:76664200-76664219 | Msa0376550:CDS | 50.0% | |
| GGGAGCTCAATATCACTAGG+TGG | + | chr3_1:76664203-76664222 | Msa0376550:CDS | 50.0% | |
| CTTGAAAATGTGGGGCAGAG+TGG | - | chr3_1:76664303-76664322 | None:intergenic | 50.0% | |
| GTTGGAGAAACTTCCGGGAA+TGG | + | chr3_1:76665076-76665095 | Msa0376550:CDS | 50.0% | |
| TGGTTGTAATGCCCCAGCTC+AGG | - | chr3_1:76663905-76663924 | None:intergenic | 55.0% | |
| GGTGGCCTCACAGAAAACTG+AGG | + | chr3_1:76664221-76664240 | Msa0376550:CDS | 55.0% | |
| !!! | GTTTTTGGTCCATGACCCGC+CGG | + | chr3_1:76664383-76664402 | Msa0376550:intron | 55.0% |
| !! | TTTTTGGTCCATGACCCGCC+GGG | + | chr3_1:76664384-76664403 | Msa0376550:intron | 55.0% |
| TTATCATTCCCGGCGGGTCA+TGG | - | chr3_1:76664395-76664414 | None:intergenic | 55.0% | |
| TGGTTGTAATGCCCCAGCTC+AGG | - | chr3_1:76663905-76663924 | None:intergenic | 55.0% | |
| GGTGGCCTCACAGAAAACTG+AGG | + | chr3_1:76664221-76664240 | Msa0376550:CDS | 55.0% | |
| !!! | GTTTTTGGTCCATGACCCGC+CGG | + | chr3_1:76664383-76664402 | Msa0376550:intron | 55.0% |
| !! | TTTTTGGTCCATGACCCGCC+GGG | + | chr3_1:76664384-76664403 | Msa0376550:intron | 55.0% |
| TTATCATTCCCGGCGGGTCA+TGG | - | chr3_1:76664395-76664414 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 76663251 | 76665184 | 76663251 | ID=Msa0376550;Name=Msa0376550 |
| chr3_1 | mRNA | 76663251 | 76665184 | 76663251 | ID=Msa0376550-mRNA-1;Parent=Msa0376550;Name=Msa0376550-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0|0|1|1|1|3|0|266 |
| chr3_1 | exon | 76663251 | 76663333 | 76663251 | ID=Msa0376550-mRNA-1:exon:18236;Parent=Msa0376550-mRNA-1 |
| chr3_1 | exon | 76663715 | 76664273 | 76663715 | ID=Msa0376550-mRNA-1:exon:18237;Parent=Msa0376550-mRNA-1 |
| chr3_1 | exon | 76665026 | 76665184 | 76665026 | ID=Msa0376550-mRNA-1:exon:18238;Parent=Msa0376550-mRNA-1 |
| chr3_1 | CDS | 76663251 | 76663333 | 76663251 | ID=Msa0376550-mRNA-1:cds;Parent=Msa0376550-mRNA-1 |
| chr3_1 | CDS | 76663715 | 76664273 | 76663715 | ID=Msa0376550-mRNA-1:cds;Parent=Msa0376550-mRNA-1 |
| chr3_1 | CDS | 76665026 | 76665184 | 76665026 | ID=Msa0376550-mRNA-1:cds;Parent=Msa0376550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
