Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377100 | RHN70095.1 | 91.639 | 299 | 17 | 1 | 1 | 291 | 34 | 332 | 0.0 | 566 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377100 | sp|Q8L3W1|VRN1_ARATH | 29.538 | 325 | 155 | 9 | 2 | 262 | 22 | 336 | 5.13e-30 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377100 | A0A396J148 | 91.639 | 299 | 17 | 1 | 1 | 291 | 34 | 332 | 0.0 | 566 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0377100 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377100 | MtrunA17_Chr3g0131891 | 91.639 | 299 | 17 | 1 | 1 | 291 | 34 | 332 | 0.0 | 566 |
| Msa0377100 | MtrunA17_Chr7g0233531 | 69.395 | 281 | 83 | 2 | 1 | 279 | 1 | 280 | 5.43e-135 | 383 |
| Msa0377100 | MtrunA17_Chr7g0233561 | 64.865 | 296 | 86 | 3 | 2 | 279 | 34 | 329 | 1.00e-134 | 384 |
| Msa0377100 | MtrunA17_Chr7g0233541 | 65.657 | 297 | 84 | 5 | 1 | 279 | 1 | 297 | 1.03e-130 | 373 |
| Msa0377100 | MtrunA17_Chr7g0233521 | 60.678 | 295 | 85 | 5 | 1 | 279 | 1 | 280 | 1.61e-116 | 336 |
| Msa0377100 | MtrunA17_Chr7g0233571 | 61.458 | 192 | 55 | 4 | 1 | 173 | 25 | 216 | 2.08e-72 | 222 |
| Msa0377100 | MtrunA17_Chr1g0163071 | 35.314 | 303 | 139 | 8 | 1 | 262 | 1 | 287 | 4.38e-47 | 160 |
| Msa0377100 | MtrunA17_Chr1g0208771 | 32.063 | 315 | 160 | 10 | 2 | 280 | 13 | 309 | 1.72e-45 | 159 |
| Msa0377100 | MtrunA17_Chr8g0390841 | 33.981 | 309 | 160 | 10 | 2 | 280 | 55 | 349 | 2.67e-43 | 154 |
| Msa0377100 | MtrunA17_Chr3g0103181 | 30.769 | 273 | 157 | 8 | 2 | 261 | 26 | 279 | 1.31e-32 | 121 |
| Msa0377100 | MtrunA17_Chr1g0163181 | 30.935 | 278 | 166 | 8 | 2 | 260 | 21 | 291 | 8.08e-29 | 114 |
| Msa0377100 | MtrunA17_Chr3g0077451 | 26.792 | 265 | 154 | 5 | 2 | 265 | 12 | 237 | 1.16e-26 | 104 |
| Msa0377100 | MtrunA17_Chr1g0171611 | 31.698 | 265 | 151 | 10 | 2 | 260 | 25 | 265 | 4.86e-26 | 104 |
| Msa0377100 | MtrunA17_Chr3g0103171 | 28.253 | 269 | 177 | 8 | 1 | 261 | 5 | 265 | 3.54e-25 | 101 |
| Msa0377100 | MtrunA17_Chr1g0154161 | 31.010 | 287 | 162 | 10 | 2 | 270 | 46 | 314 | 3.55e-24 | 99.8 |
| Msa0377100 | MtrunA17_Chr1g0163231 | 28.044 | 271 | 165 | 9 | 2 | 260 | 25 | 277 | 6.31e-24 | 98.6 |
| Msa0377100 | MtrunA17_Chr1g0163251 | 30.961 | 281 | 173 | 8 | 2 | 272 | 21 | 290 | 2.58e-23 | 98.6 |
| Msa0377100 | MtrunA17_Chr5g0429931 | 26.592 | 267 | 161 | 7 | 2 | 265 | 11 | 245 | 7.07e-23 | 94.7 |
| Msa0377100 | MtrunA17_Chr1g0163261 | 28.571 | 294 | 186 | 9 | 2 | 286 | 25 | 303 | 1.65e-22 | 94.7 |
| Msa0377100 | MtrunA17_Chr1g0163201 | 30.576 | 278 | 165 | 9 | 2 | 262 | 19 | 285 | 7.26e-22 | 94.4 |
| Msa0377100 | MtrunA17_Chr1g0163221 | 26.937 | 271 | 180 | 7 | 2 | 261 | 27 | 290 | 9.79e-22 | 93.6 |
| Msa0377100 | MtrunA17_Chr3g0103191 | 46.988 | 83 | 44 | 0 | 1 | 83 | 25 | 107 | 3.80e-21 | 90.1 |
| Msa0377100 | MtrunA17_Chr1g0154131 | 27.211 | 294 | 171 | 9 | 2 | 269 | 198 | 474 | 2.24e-20 | 90.9 |
| Msa0377100 | MtrunA17_Chr5g0419201 | 42.105 | 95 | 50 | 1 | 1 | 90 | 31 | 125 | 3.84e-20 | 85.9 |
| Msa0377100 | MtrunA17_Chr1g0154171 | 25.321 | 312 | 174 | 8 | 2 | 261 | 38 | 342 | 6.30e-20 | 88.6 |
| Msa0377100 | MtrunA17_Chr3g0077431 | 27.426 | 237 | 132 | 5 | 30 | 265 | 1 | 198 | 8.48e-20 | 85.1 |
| Msa0377100 | MtrunA17_Chr3g0077411 | 26.136 | 264 | 166 | 7 | 2 | 261 | 278 | 516 | 1.56e-19 | 88.6 |
| Msa0377100 | MtrunA17_Chr3g0077411 | 25.703 | 249 | 131 | 8 | 2 | 249 | 41 | 236 | 5.49e-15 | 75.1 |
| Msa0377100 | MtrunA17_Chr3g0077461 | 29.032 | 248 | 131 | 7 | 2 | 249 | 253 | 455 | 5.45e-19 | 86.7 |
| Msa0377100 | MtrunA17_Chr3g0077461 | 27.092 | 251 | 118 | 9 | 2 | 249 | 23 | 211 | 2.23e-16 | 79.0 |
| Msa0377100 | MtrunA17_Chr3g0103151 | 45.122 | 82 | 45 | 0 | 2 | 83 | 26 | 107 | 5.53e-19 | 82.0 |
| Msa0377100 | MtrunA17_Chr4g0067431 | 27.431 | 288 | 174 | 10 | 2 | 261 | 31 | 311 | 6.35e-19 | 85.1 |
| Msa0377100 | MtrunA17_Chr4g0033961 | 38.168 | 131 | 69 | 3 | 143 | 267 | 269 | 393 | 2.28e-18 | 84.7 |
| Msa0377100 | MtrunA17_Chr4g0033961 | 38.542 | 96 | 57 | 1 | 2 | 95 | 22 | 117 | 6.46e-15 | 74.3 |
| Msa0377100 | MtrunA17_Chr1g0154151 | 24.837 | 306 | 169 | 8 | 2 | 260 | 20 | 311 | 3.56e-18 | 83.2 |
| Msa0377100 | MtrunA17_Chr1g0162441 | 37.594 | 133 | 71 | 3 | 143 | 269 | 273 | 399 | 8.95e-18 | 82.8 |
| Msa0377100 | MtrunA17_Chr1g0162441 | 39.024 | 82 | 50 | 0 | 2 | 83 | 23 | 104 | 2.33e-15 | 75.9 |
| Msa0377100 | MtrunA17_Chr3g0077421 | 28.750 | 240 | 126 | 7 | 30 | 265 | 1 | 199 | 1.15e-17 | 79.3 |
| Msa0377100 | MtrunA17_Chr3g0077441 | 28.750 | 240 | 126 | 7 | 30 | 265 | 1 | 199 | 1.15e-17 | 79.3 |
| Msa0377100 | MtrunA17_Chr1g0154191 | 24.923 | 325 | 168 | 9 | 2 | 260 | 38 | 352 | 2.32e-17 | 81.3 |
| Msa0377100 | MtrunA17_Chr1g0163241 | 41.748 | 103 | 53 | 2 | 2 | 99 | 23 | 123 | 2.02e-15 | 72.4 |
| Msa0377100 | MtrunA17_Chr1g0163131 | 27.915 | 283 | 167 | 11 | 1 | 258 | 33 | 303 | 7.99e-15 | 73.6 |
| Msa0377100 | MtrunA17_Chr4g0009491 | 27.451 | 204 | 120 | 5 | 5 | 208 | 244 | 419 | 2.99e-13 | 69.7 |
| Msa0377100 | MtrunA17_Chr4g0009491 | 26.033 | 242 | 124 | 8 | 2 | 241 | 13 | 201 | 8.51e-13 | 68.2 |
| Msa0377100 | MtrunA17_Chr1g0163191 | 42.683 | 82 | 45 | 1 | 2 | 83 | 21 | 100 | 3.84e-13 | 66.2 |
| Msa0377100 | MtrunA17_Chr3g0077381 | 35.294 | 85 | 55 | 0 | 2 | 86 | 36 | 120 | 5.62e-13 | 68.9 |
| Msa0377100 | MtrunA17_Chr3g0077381 | 35.714 | 98 | 63 | 0 | 5 | 102 | 266 | 363 | 2.98e-11 | 63.5 |
| Msa0377100 | MtrunA17_Chr1g0154251 | 38.667 | 75 | 46 | 0 | 2 | 76 | 42 | 116 | 2.86e-12 | 66.6 |
| Msa0377100 | MtrunA17_Chr1g0163121 | 43.182 | 88 | 47 | 2 | 1 | 88 | 10 | 94 | 3.41e-12 | 63.2 |
| Msa0377100 | MtrunA17_Chr1g0162411 | 35.165 | 91 | 58 | 1 | 2 | 91 | 23 | 113 | 1.39e-11 | 64.7 |
| Msa0377100 | MtrunA17_Chr1g0163091 | 33.628 | 113 | 70 | 3 | 160 | 272 | 22 | 129 | 2.90e-11 | 60.8 |
| Msa0377100 | MtrunA17_Chr1g0154211 | 36.000 | 75 | 48 | 0 | 2 | 76 | 38 | 112 | 7.81e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377100 | AT3G18990.2 | 29.573 | 328 | 157 | 9 | 2 | 265 | 22 | 339 | 5.15e-31 | 119 |
| Msa0377100 | AT3G18990.1 | 29.538 | 325 | 155 | 9 | 2 | 262 | 22 | 336 | 5.22e-31 | 119 |
| Msa0377100 | AT4G33280.1 | 29.097 | 299 | 172 | 11 | 1 | 268 | 38 | 327 | 7.64e-19 | 85.5 |
| Msa0377100 | AT1G49475.1 | 43.529 | 85 | 47 | 1 | 2 | 86 | 50 | 133 | 1.43e-16 | 76.6 |
| Msa0377100 | AT4G01580.1 | 42.045 | 88 | 51 | 0 | 2 | 89 | 46 | 133 | 1.86e-16 | 76.3 |
| Msa0377100 | AT3G18960.3 | 40.909 | 88 | 52 | 0 | 2 | 89 | 9 | 96 | 1.23e-15 | 73.6 |
| Msa0377100 | AT3G18960.2 | 40.909 | 88 | 52 | 0 | 2 | 89 | 46 | 133 | 1.72e-15 | 73.6 |
| Msa0377100 | AT3G18960.1 | 40.909 | 88 | 52 | 0 | 2 | 89 | 46 | 133 | 2.63e-15 | 73.6 |
| Msa0377100 | AT1G49480.3 | 31.844 | 179 | 99 | 7 | 90 | 262 | 60 | 221 | 9.73e-14 | 69.7 |
| Msa0377100 | AT1G49480.1 | 31.844 | 179 | 99 | 7 | 90 | 262 | 60 | 221 | 9.73e-14 | 69.7 |
| Msa0377100 | AT1G49480.2 | 31.844 | 179 | 99 | 7 | 90 | 262 | 60 | 221 | 9.73e-14 | 69.7 |
Find 49 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAAATTGGAAATTAAATT+TGG | 0.186782 | 3_1:-77466069 | Msa0377100:CDS |
| CATATCAAAGTAAGATTAAT+TGG | 0.187322 | 3_1:-77464273 | Msa0377100:CDS |
| TATTTCTCCACAAGCTTTCT+TGG | 0.203077 | 3_1:+77466137 | None:intergenic |
| GCTAACTCCTCCTTTGAAAT+TGG | 0.203833 | 3_1:-77465798 | Msa0377100:CDS |
| CAAAGATGTGCACATGAAAA+AGG | 0.205065 | 3_1:+77465940 | None:intergenic |
| CTTTCCAAGTTCATATATTC+AGG | 0.253552 | 3_1:-77464327 | Msa0377100:CDS |
| GACAAGAGTTGAAGCTAAAA+AGG | 0.273172 | 3_1:-77465886 | Msa0377100:CDS |
| AGACTCCAAATGGTGTAAAT+TGG | 0.312711 | 3_1:-77466082 | Msa0377100:CDS |
| AATTTCCAATTTACACCATT+TGG | 0.315099 | 3_1:+77466077 | None:intergenic |
| AGAAAGCTTGTGGAGAAATA+TGG | 0.315667 | 3_1:-77466134 | Msa0377100:CDS |
| TGCAACTTACCAGAAGAAAA+TGG | 0.347556 | 3_1:+77464944 | None:intergenic |
| ATCCTGATTCGGTACTTTGC+AGG | 0.347997 | 3_1:+77464466 | None:intergenic |
| CTACAATCTTCATTATTTGA+AGG | 0.379644 | 3_1:+77465840 | None:intergenic |
| AAGTGTCAAATGGCAGAGTT+TGG | 0.384047 | 3_1:-77464489 | Msa0377100:CDS |
| GGCCTGCAAAGTACCGAATC+AGG | 0.422243 | 3_1:-77464468 | Msa0377100:CDS |
| TGGCAAAATATGGTTTCAAA+AGG | 0.425042 | 3_1:-77466036 | Msa0377100:CDS |
| TCCATCCTTTGTTGTTGTCA+TGG | 0.427556 | 3_1:-77464986 | Msa0377100:CDS |
| GCAGTAGTTGTGTTAATGTT+CGG | 0.444915 | 3_1:-77465773 | Msa0377100:CDS |
| CCATCCTTTGTTGTTGTCAT+GGG | 0.446533 | 3_1:-77464985 | Msa0377100:CDS |
| TTAGCTTCAACTCTTGTCAA+AGG | 0.484921 | 3_1:+77465891 | None:intergenic |
| TAGCTTCAACTCTTGTCAAA+GGG | 0.493656 | 3_1:+77465892 | None:intergenic |
| CTTTCTGTCAATATGATGTA+CGG | 0.494299 | 3_1:+77465734 | None:intergenic |
| GAAGACAATAACTTGAAAGT+TGG | 0.499244 | 3_1:-77464391 | Msa0377100:CDS |
| ACATGTGTAAAGACTCCAAA+TGG | 0.500501 | 3_1:-77466092 | Msa0377100:CDS |
| TCTCCCTGAATATATGAACT+TGG | 0.502600 | 3_1:+77464323 | None:intergenic |
| CGTACATCATATTGACAGAA+AGG | 0.506265 | 3_1:-77465733 | Msa0377100:CDS |
| CATCTTTGATAAGAGTGCCT+TGG | 0.514558 | 3_1:-77465925 | Msa0377100:CDS |
| AAATATGGTTTCAAAAGGGA+TGG | 0.524548 | 3_1:-77466031 | Msa0377100:CDS |
| CATATTGACAGAAAGGGAAA+AGG | 0.525115 | 3_1:-77465726 | Msa0377100:intron |
| TAATGTTCGGAAATTTCAAA+AGG | 0.529933 | 3_1:-77465760 | Msa0377100:CDS |
| CTGTGTGGGACATCCTGATT+CGG | 0.531424 | 3_1:+77464455 | None:intergenic |
| CAGACTATACCGTCTATGTT+CGG | 0.532014 | 3_1:-77464559 | Msa0377100:CDS |
| GGCAAAATATGGTTTCAAAA+GGG | 0.535267 | 3_1:-77466035 | Msa0377100:CDS |
| TTTCCAAGTTCATATATTCA+GGG | 0.536079 | 3_1:-77464326 | Msa0377100:CDS |
| ACTACTGCTTCCAATTTCAA+AGG | 0.542132 | 3_1:+77465788 | None:intergenic |
| GTACATCATATTGACAGAAA+GGG | 0.549586 | 3_1:-77465732 | Msa0377100:CDS |
| CAAAGGGCTATTTATCTCCA+AGG | 0.557179 | 3_1:+77465908 | None:intergenic |
| CCCATGACAACAACAAAGGA+TGG | 0.571041 | 3_1:+77464985 | None:intergenic |
| GAGTATCATTCTCTAGCTCA+TGG | 0.575939 | 3_1:-77465996 | Msa0377100:CDS |
| CTAAGATTTGAACTCTCAAG+TGG | 0.579522 | 3_1:-77464430 | Msa0377100:CDS |
| GATTTGAACTCTCAAGTGGA+TGG | 0.585291 | 3_1:-77464426 | Msa0377100:CDS |
| GATGATGCCAAGAAAGCTTG+TGG | 0.596116 | 3_1:-77466144 | Msa0377100:CDS |
| TTCAAATCTTAGTCCTGTGT+GGG | 0.598172 | 3_1:+77464441 | None:intergenic |
| TTTAATTTGAATAAGAAGCG+AGG | 0.603085 | 3_1:-77464526 | Msa0377100:CDS |
| ACTGCTTCCAATTTCAAAGG+AGG | 0.612452 | 3_1:+77465791 | None:intergenic |
| GTTCAAATCTTAGTCCTGTG+TGG | 0.647989 | 3_1:+77464440 | None:intergenic |
| TGTCTCTTACCGAACATAGA+CGG | 0.669663 | 3_1:+77464550 | None:intergenic |
| CGAATCAGGATGTCCCACAC+AGG | 0.680142 | 3_1:-77464454 | Msa0377100:CDS |
| TGCACCCATGACAACAACAA+AGG | 0.693553 | 3_1:+77464981 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTAAATTGGAAATTAAATT+TGG | - | chr3_1:77464311-77464330 | Msa0377100:CDS | 15.0% |
| !!! | TTCATGTTATCATTTTTAAA+TGG | - | chr3_1:77464744-77464763 | Msa0377100:intron | 15.0% |
| !!! | AAGTTGATTTTAACATTTTT+TGG | - | chr3_1:77464873-77464892 | Msa0377100:intron | 15.0% |
| !!! | TTATTATTCAACTCATTTTT+AGG | - | chr3_1:77464993-77465012 | Msa0377100:CDS | 15.0% |
| !! | TGTAAATTGGAAATTAAATT+TGG | - | chr3_1:77464311-77464330 | Msa0377100:CDS | 15.0% |
| !!! | TTCATGTTATCATTTTTAAA+TGG | - | chr3_1:77464744-77464763 | Msa0377100:intron | 15.0% |
| !!! | AAGTTGATTTTAACATTTTT+TGG | - | chr3_1:77464873-77464892 | Msa0377100:intron | 15.0% |
| !!! | TTATTATTCAACTCATTTTT+AGG | - | chr3_1:77464993-77465012 | Msa0377100:CDS | 15.0% |
| !! | TTAAATTTGGTAAAAAGTGA+TGG | - | chr3_1:77464324-77464343 | Msa0377100:CDS | 20.0% |
| !! | TTCTTTCATATTTAAAAAGC+AGG | + | chr3_1:77464416-77464435 | None:intergenic | 20.0% |
| !!! | ATTGATTTTGTTTCTATAGT+TGG | - | chr3_1:77464910-77464929 | Msa0377100:intron | 20.0% |
| !!! | ATGAATTGATTTAGTAAAGA+TGG | + | chr3_1:77465229-77465248 | None:intergenic | 20.0% |
| !! | ACAACTAAATATCTACTTTA+TGG | - | chr3_1:77465280-77465299 | Msa0377100:intron | 20.0% |
| !! | CTCCATTAAGAAATATATAT+TGG | - | chr3_1:77465524-77465543 | Msa0377100:intron | 20.0% |
| !! | GACCAATATATATTTCTTAA+TGG | + | chr3_1:77465529-77465548 | None:intergenic | 20.0% |
| !! | CATATCAAAGTAAGATTAAT+TGG | - | chr3_1:77466107-77466126 | Msa0377100:CDS | 20.0% |
| !! | TTAAATTTGGTAAAAAGTGA+TGG | - | chr3_1:77464324-77464343 | Msa0377100:CDS | 20.0% |
| !! | TTCTTTCATATTTAAAAAGC+AGG | + | chr3_1:77464416-77464435 | None:intergenic | 20.0% |
| !!! | ATTGATTTTGTTTCTATAGT+TGG | - | chr3_1:77464910-77464929 | Msa0377100:intron | 20.0% |
| !!! | ATGAATTGATTTAGTAAAGA+TGG | + | chr3_1:77465229-77465248 | None:intergenic | 20.0% |
| !! | ACAACTAAATATCTACTTTA+TGG | - | chr3_1:77465280-77465299 | Msa0377100:intron | 20.0% |
| !! | CTCCATTAAGAAATATATAT+TGG | - | chr3_1:77465524-77465543 | Msa0377100:intron | 20.0% |
| !! | GACCAATATATATTTCTTAA+TGG | + | chr3_1:77465529-77465548 | None:intergenic | 20.0% |
| !! | CATATCAAAGTAAGATTAAT+TGG | - | chr3_1:77466107-77466126 | Msa0377100:CDS | 20.0% |
| ! | AATTTCCAATTTACACCATT+TGG | + | chr3_1:77464306-77464325 | None:intergenic | 25.0% |
| ! | TAAAAAGTGATGGCAAAATA+TGG | - | chr3_1:77464334-77464353 | Msa0377100:CDS | 25.0% |
| ! | CTACAATCTTCATTATTTGA+AGG | + | chr3_1:77464543-77464562 | None:intergenic | 25.0% |
| ! | TAATGTTCGGAAATTTCAAA+AGG | - | chr3_1:77464620-77464639 | Msa0377100:intron | 25.0% |
| !!! | AAGATGGTTTTAGTTAAAAG+TGG | + | chr3_1:77465213-77465232 | None:intergenic | 25.0% |
| ! | GTAAGTTGCAAAGATAAATT+TGG | - | chr3_1:77465449-77465468 | Msa0377100:intron | 25.0% |
| ! | TTTCTTAATGGAGAAAGATT+TGG | + | chr3_1:77465517-77465536 | None:intergenic | 25.0% |
| !!! | TTTAATTTGAATAAGAAGCG+AGG | - | chr3_1:77465854-77465873 | Msa0377100:CDS | 25.0% |
| !!! | ATTCATTTTCAAGTGTCAAA+TGG | - | chr3_1:77465881-77465900 | Msa0377100:CDS | 25.0% |
| ! | TTTCCAAGTTCATATATTCA+GGG | - | chr3_1:77466054-77466073 | Msa0377100:CDS | 25.0% |
| ! | AATTTCCAATTTACACCATT+TGG | + | chr3_1:77464306-77464325 | None:intergenic | 25.0% |
| ! | TAAAAAGTGATGGCAAAATA+TGG | - | chr3_1:77464334-77464353 | Msa0377100:CDS | 25.0% |
| ! | CTACAATCTTCATTATTTGA+AGG | + | chr3_1:77464543-77464562 | None:intergenic | 25.0% |
| ! | TAATGTTCGGAAATTTCAAA+AGG | - | chr3_1:77464620-77464639 | Msa0377100:intron | 25.0% |
| !!! | AAGATGGTTTTAGTTAAAAG+TGG | + | chr3_1:77465213-77465232 | None:intergenic | 25.0% |
| ! | GTAAGTTGCAAAGATAAATT+TGG | - | chr3_1:77465449-77465468 | Msa0377100:intron | 25.0% |
| ! | TTTCTTAATGGAGAAAGATT+TGG | + | chr3_1:77465517-77465536 | None:intergenic | 25.0% |
| !!! | TTTAATTTGAATAAGAAGCG+AGG | - | chr3_1:77465854-77465873 | Msa0377100:CDS | 25.0% |
| !!! | ATTCATTTTCAAGTGTCAAA+TGG | - | chr3_1:77465881-77465900 | Msa0377100:CDS | 25.0% |
| ! | TTTCCAAGTTCATATATTCA+GGG | - | chr3_1:77466054-77466073 | Msa0377100:CDS | 25.0% |
| ! | GTCTTTACACATGTAGTTTT+CGG | + | chr3_1:77464282-77464301 | None:intergenic | 30.0% |
| TGGCAAAATATGGTTTCAAA+AGG | - | chr3_1:77464344-77464363 | Msa0377100:CDS | 30.0% | |
| GGCAAAATATGGTTTCAAAA+GGG | - | chr3_1:77464345-77464364 | Msa0377100:CDS | 30.0% | |
| AAATATGGTTTCAAAAGGGA+TGG | - | chr3_1:77464349-77464368 | Msa0377100:CDS | 30.0% | |
| CATATTTAAAAAGCAGGAGA+TGG | + | chr3_1:77464410-77464429 | None:intergenic | 30.0% | |
| AAAGATGTGCACATGAAAAA+GGG | + | chr3_1:77464442-77464461 | None:intergenic | 30.0% | |
| CTTTCTGTCAATATGATGTA+CGG | + | chr3_1:77464649-77464668 | None:intergenic | 30.0% | |
| GTACATCATATTGACAGAAA+GGG | - | chr3_1:77464648-77464667 | Msa0377100:intron | 30.0% | |
| TTATACCTAGAGTTAACATG+AGG | + | chr3_1:77464776-77464795 | None:intergenic | 30.0% | |
| ! | TGGCATTTTTATTGTGTGTT+TGG | - | chr3_1:77464812-77464831 | Msa0377100:intron | 30.0% |
| !!! | CATTTTTTGGTCATGTCAAT+TGG | - | chr3_1:77464886-77464905 | Msa0377100:intron | 30.0% |
| TTGAGTGCAAAAATCATCTT+TGG | + | chr3_1:77464971-77464990 | None:intergenic | 30.0% | |
| ! | ATTGACTTTGTCTCAAGAAT+TGG | - | chr3_1:77465070-77465089 | Msa0377100:intron | 30.0% |
| TTGAGTGTAAAATTCACTCT+TGG | + | chr3_1:77465130-77465149 | None:intergenic | 30.0% | |
| ! | GATTGTGAAGTGTTTATGTT+TGG | + | chr3_1:77465187-77465206 | None:intergenic | 30.0% |
| TTATCAGCATCAACAATCAT+TGG | + | chr3_1:77465332-77465351 | None:intergenic | 30.0% | |
| ! | GATTTGGTTATTGATGTTGT+TGG | + | chr3_1:77465501-77465520 | None:intergenic | 30.0% |
| GAAGACAATAACTTGAAAGT+TGG | - | chr3_1:77465989-77466008 | Msa0377100:CDS | 30.0% | |
| CTTTCCAAGTTCATATATTC+AGG | - | chr3_1:77466053-77466072 | Msa0377100:CDS | 30.0% | |
| ! | GTCTTTACACATGTAGTTTT+CGG | + | chr3_1:77464282-77464301 | None:intergenic | 30.0% |
| TGGCAAAATATGGTTTCAAA+AGG | - | chr3_1:77464344-77464363 | Msa0377100:CDS | 30.0% | |
| GGCAAAATATGGTTTCAAAA+GGG | - | chr3_1:77464345-77464364 | Msa0377100:CDS | 30.0% | |
| AAATATGGTTTCAAAAGGGA+TGG | - | chr3_1:77464349-77464368 | Msa0377100:CDS | 30.0% | |
| CATATTTAAAAAGCAGGAGA+TGG | + | chr3_1:77464410-77464429 | None:intergenic | 30.0% | |
| AAAGATGTGCACATGAAAAA+GGG | + | chr3_1:77464442-77464461 | None:intergenic | 30.0% | |
| CTTTCTGTCAATATGATGTA+CGG | + | chr3_1:77464649-77464668 | None:intergenic | 30.0% | |
| GTACATCATATTGACAGAAA+GGG | - | chr3_1:77464648-77464667 | Msa0377100:intron | 30.0% | |
| TTATACCTAGAGTTAACATG+AGG | + | chr3_1:77464776-77464795 | None:intergenic | 30.0% | |
| ! | TGGCATTTTTATTGTGTGTT+TGG | - | chr3_1:77464812-77464831 | Msa0377100:intron | 30.0% |
| !!! | CATTTTTTGGTCATGTCAAT+TGG | - | chr3_1:77464886-77464905 | Msa0377100:intron | 30.0% |
| TTGAGTGCAAAAATCATCTT+TGG | + | chr3_1:77464971-77464990 | None:intergenic | 30.0% | |
| ! | ATTGACTTTGTCTCAAGAAT+TGG | - | chr3_1:77465070-77465089 | Msa0377100:intron | 30.0% |
| TTGAGTGTAAAATTCACTCT+TGG | + | chr3_1:77465130-77465149 | None:intergenic | 30.0% | |
| ! | GATTGTGAAGTGTTTATGTT+TGG | + | chr3_1:77465187-77465206 | None:intergenic | 30.0% |
| TTATCAGCATCAACAATCAT+TGG | + | chr3_1:77465332-77465351 | None:intergenic | 30.0% | |
| ! | GATTTGGTTATTGATGTTGT+TGG | + | chr3_1:77465501-77465520 | None:intergenic | 30.0% |
| GAAGACAATAACTTGAAAGT+TGG | - | chr3_1:77465989-77466008 | Msa0377100:CDS | 30.0% | |
| CTTTCCAAGTTCATATATTC+AGG | - | chr3_1:77466053-77466072 | Msa0377100:CDS | 30.0% | |
| TATTTCTCCACAAGCTTTCT+TGG | + | chr3_1:77464246-77464265 | None:intergenic | 35.0% | |
| AGAAAGCTTGTGGAGAAATA+TGG | - | chr3_1:77464246-77464265 | Msa0377100:CDS | 35.0% | |
| ACATGTGTAAAGACTCCAAA+TGG | - | chr3_1:77464288-77464307 | Msa0377100:CDS | 35.0% | |
| AGACTCCAAATGGTGTAAAT+TGG | - | chr3_1:77464298-77464317 | Msa0377100:CDS | 35.0% | |
| CAAAGATGTGCACATGAAAA+AGG | + | chr3_1:77464443-77464462 | None:intergenic | 35.0% | |
| TAGCTTCAACTCTTGTCAAA+GGG | + | chr3_1:77464491-77464510 | None:intergenic | 35.0% | |
| TTAGCTTCAACTCTTGTCAA+AGG | + | chr3_1:77464492-77464511 | None:intergenic | 35.0% | |
| GACAAGAGTTGAAGCTAAAA+AGG | - | chr3_1:77464494-77464513 | Msa0377100:CDS | 35.0% | |
| AAAAAGGTCTTCAACTGTCA+AGG | - | chr3_1:77464510-77464529 | Msa0377100:CDS | 35.0% | |
| ACTACTGCTTCCAATTTCAA+AGG | + | chr3_1:77464595-77464614 | None:intergenic | 35.0% | |
| GCAGTAGTTGTGTTAATGTT+CGG | - | chr3_1:77464607-77464626 | Msa0377100:intron | 35.0% | |
| CGTACATCATATTGACAGAA+AGG | - | chr3_1:77464647-77464666 | Msa0377100:intron | 35.0% | |
| CATATTGACAGAAAGGGAAA+AGG | - | chr3_1:77464654-77464673 | Msa0377100:intron | 35.0% | |
| ATGTACCTCATGTTAACTCT+AGG | - | chr3_1:77464768-77464787 | Msa0377100:intron | 35.0% | |
| TAACTCTAGGTATAACCATG+TGG | - | chr3_1:77464781-77464800 | Msa0377100:intron | 35.0% | |
| ATAACCATGTGGAAAATGAC+TGG | - | chr3_1:77464792-77464811 | Msa0377100:intron | 35.0% | |
| ! | GTTTTCCTGCAAAATCGAAA+TGG | + | chr3_1:77465310-77465329 | None:intergenic | 35.0% |
| TGCAACTTACCAGAAGAAAA+TGG | + | chr3_1:77465439-77465458 | None:intergenic | 35.0% | |
| ! | CATTTGCCTTTTCTTTTGCT+TGG | - | chr3_1:77465798-77465817 | Msa0377100:CDS | 35.0% |
| TTCAAATCTTAGTCCTGTGT+GGG | + | chr3_1:77465942-77465961 | None:intergenic | 35.0% | |
| CTAAGATTTGAACTCTCAAG+TGG | - | chr3_1:77465950-77465969 | Msa0377100:CDS | 35.0% | |
| TCTCCCTGAATATATGAACT+TGG | + | chr3_1:77466060-77466079 | None:intergenic | 35.0% | |
| TATTTCTCCACAAGCTTTCT+TGG | + | chr3_1:77464246-77464265 | None:intergenic | 35.0% | |
| AGAAAGCTTGTGGAGAAATA+TGG | - | chr3_1:77464246-77464265 | Msa0377100:CDS | 35.0% | |
| ACATGTGTAAAGACTCCAAA+TGG | - | chr3_1:77464288-77464307 | Msa0377100:CDS | 35.0% | |
| AGACTCCAAATGGTGTAAAT+TGG | - | chr3_1:77464298-77464317 | Msa0377100:CDS | 35.0% | |
| CAAAGATGTGCACATGAAAA+AGG | + | chr3_1:77464443-77464462 | None:intergenic | 35.0% | |
| TAGCTTCAACTCTTGTCAAA+GGG | + | chr3_1:77464491-77464510 | None:intergenic | 35.0% | |
| TTAGCTTCAACTCTTGTCAA+AGG | + | chr3_1:77464492-77464511 | None:intergenic | 35.0% | |
| GACAAGAGTTGAAGCTAAAA+AGG | - | chr3_1:77464494-77464513 | Msa0377100:CDS | 35.0% | |
| AAAAAGGTCTTCAACTGTCA+AGG | - | chr3_1:77464510-77464529 | Msa0377100:CDS | 35.0% | |
| ACTACTGCTTCCAATTTCAA+AGG | + | chr3_1:77464595-77464614 | None:intergenic | 35.0% | |
| GCAGTAGTTGTGTTAATGTT+CGG | - | chr3_1:77464607-77464626 | Msa0377100:intron | 35.0% | |
| CGTACATCATATTGACAGAA+AGG | - | chr3_1:77464647-77464666 | Msa0377100:intron | 35.0% | |
| CATATTGACAGAAAGGGAAA+AGG | - | chr3_1:77464654-77464673 | Msa0377100:intron | 35.0% | |
| ATGTACCTCATGTTAACTCT+AGG | - | chr3_1:77464768-77464787 | Msa0377100:intron | 35.0% | |
| TAACTCTAGGTATAACCATG+TGG | - | chr3_1:77464781-77464800 | Msa0377100:intron | 35.0% | |
| ATAACCATGTGGAAAATGAC+TGG | - | chr3_1:77464792-77464811 | Msa0377100:intron | 35.0% | |
| ! | GTTTTCCTGCAAAATCGAAA+TGG | + | chr3_1:77465310-77465329 | None:intergenic | 35.0% |
| TGCAACTTACCAGAAGAAAA+TGG | + | chr3_1:77465439-77465458 | None:intergenic | 35.0% | |
| ! | CATTTGCCTTTTCTTTTGCT+TGG | - | chr3_1:77465798-77465817 | Msa0377100:CDS | 35.0% |
| TTCAAATCTTAGTCCTGTGT+GGG | + | chr3_1:77465942-77465961 | None:intergenic | 35.0% | |
| CTAAGATTTGAACTCTCAAG+TGG | - | chr3_1:77465950-77465969 | Msa0377100:CDS | 35.0% | |
| TCTCCCTGAATATATGAACT+TGG | + | chr3_1:77466060-77466079 | None:intergenic | 35.0% | |
| ! | GAGTATCATTCTCTAGCTCA+TGG | - | chr3_1:77464384-77464403 | Msa0377100:CDS | 40.0% |
| !! | CATCTTTGATAAGAGTGCCT+TGG | - | chr3_1:77464455-77464474 | Msa0377100:CDS | 40.0% |
| CAAAGGGCTATTTATCTCCA+AGG | + | chr3_1:77464475-77464494 | None:intergenic | 40.0% | |
| !! | GCTAACTCCTCCTTTGAAAT+TGG | - | chr3_1:77464582-77464601 | Msa0377100:intron | 40.0% |
| ACTGCTTCCAATTTCAAAGG+AGG | + | chr3_1:77464592-77464611 | None:intergenic | 40.0% | |
| !! | AATGCCAGTCATTTTCCACA+TGG | + | chr3_1:77464799-77464818 | None:intergenic | 40.0% |
| ! | TTGTGTGTTTGGTTTCACAG+TGG | - | chr3_1:77464823-77464842 | Msa0377100:intron | 40.0% |
| ! | TGTGTGTTTGGTTTCACAGT+GGG | - | chr3_1:77464824-77464843 | Msa0377100:intron | 40.0% |
| CCATTTCACGTTCAACTCAT+CGG | - | chr3_1:77465036-77465055 | Msa0377100:intron | 40.0% | |
| ! | GTGTTCCATTTCGATTTTGC+AGG | - | chr3_1:77465302-77465321 | Msa0377100:intron | 40.0% |
| !! | TCCATCCTTTGTTGTTGTCA+TGG | - | chr3_1:77465394-77465413 | Msa0377100:intron | 40.0% |
| !! | CCATCCTTTGTTGTTGTCAT+GGG | - | chr3_1:77465395-77465414 | Msa0377100:intron | 40.0% |
| AGTCTGCCAAGCAAAAGAAA+AGG | + | chr3_1:77465807-77465826 | None:intergenic | 40.0% | |
| CAGACTATACCGTCTATGTT+CGG | - | chr3_1:77465821-77465840 | Msa0377100:CDS | 40.0% | |
| TGTCTCTTACCGAACATAGA+CGG | + | chr3_1:77465833-77465852 | None:intergenic | 40.0% | |
| AAGTGTCAAATGGCAGAGTT+TGG | - | chr3_1:77465891-77465910 | Msa0377100:CDS | 40.0% | |
| GTTCAAATCTTAGTCCTGTG+TGG | + | chr3_1:77465943-77465962 | None:intergenic | 40.0% | |
| GATTTGAACTCTCAAGTGGA+TGG | - | chr3_1:77465954-77465973 | Msa0377100:CDS | 40.0% | |
| ! | GAGTATCATTCTCTAGCTCA+TGG | - | chr3_1:77464384-77464403 | Msa0377100:CDS | 40.0% |
| !! | CATCTTTGATAAGAGTGCCT+TGG | - | chr3_1:77464455-77464474 | Msa0377100:CDS | 40.0% |
| CAAAGGGCTATTTATCTCCA+AGG | + | chr3_1:77464475-77464494 | None:intergenic | 40.0% | |
| !! | GCTAACTCCTCCTTTGAAAT+TGG | - | chr3_1:77464582-77464601 | Msa0377100:intron | 40.0% |
| ACTGCTTCCAATTTCAAAGG+AGG | + | chr3_1:77464592-77464611 | None:intergenic | 40.0% | |
| !! | AATGCCAGTCATTTTCCACA+TGG | + | chr3_1:77464799-77464818 | None:intergenic | 40.0% |
| ! | TTGTGTGTTTGGTTTCACAG+TGG | - | chr3_1:77464823-77464842 | Msa0377100:intron | 40.0% |
| ! | TGTGTGTTTGGTTTCACAGT+GGG | - | chr3_1:77464824-77464843 | Msa0377100:intron | 40.0% |
| CCATTTCACGTTCAACTCAT+CGG | - | chr3_1:77465036-77465055 | Msa0377100:intron | 40.0% | |
| ! | GTGTTCCATTTCGATTTTGC+AGG | - | chr3_1:77465302-77465321 | Msa0377100:intron | 40.0% |
| !! | TCCATCCTTTGTTGTTGTCA+TGG | - | chr3_1:77465394-77465413 | Msa0377100:intron | 40.0% |
| !! | CCATCCTTTGTTGTTGTCAT+GGG | - | chr3_1:77465395-77465414 | Msa0377100:intron | 40.0% |
| AGTCTGCCAAGCAAAAGAAA+AGG | + | chr3_1:77465807-77465826 | None:intergenic | 40.0% | |
| CAGACTATACCGTCTATGTT+CGG | - | chr3_1:77465821-77465840 | Msa0377100:CDS | 40.0% | |
| TGTCTCTTACCGAACATAGA+CGG | + | chr3_1:77465833-77465852 | None:intergenic | 40.0% | |
| AAGTGTCAAATGGCAGAGTT+TGG | - | chr3_1:77465891-77465910 | Msa0377100:CDS | 40.0% | |
| GTTCAAATCTTAGTCCTGTG+TGG | + | chr3_1:77465943-77465962 | None:intergenic | 40.0% | |
| GATTTGAACTCTCAAGTGGA+TGG | - | chr3_1:77465954-77465973 | Msa0377100:CDS | 40.0% | |
| ! | GTGTGTTTGGTTTCACAGTG+GGG | - | chr3_1:77464825-77464844 | Msa0377100:intron | 45.0% |
| ! | CCGATGAGTTGAACGTGAAA+TGG | + | chr3_1:77465039-77465058 | None:intergenic | 45.0% |
| CCCATGACAACAACAAAGGA+TGG | + | chr3_1:77465398-77465417 | None:intergenic | 45.0% | |
| TGCACCCATGACAACAACAA+AGG | + | chr3_1:77465402-77465421 | None:intergenic | 45.0% | |
| ! | CGTTGAGCACCATTTTCTTC+TGG | - | chr3_1:77465427-77465446 | Msa0377100:intron | 45.0% |
| !! | ATCCTGATTCGGTACTTTGC+AGG | + | chr3_1:77465917-77465936 | None:intergenic | 45.0% |
| ! | GTGTGTTTGGTTTCACAGTG+GGG | - | chr3_1:77464825-77464844 | Msa0377100:intron | 45.0% |
| ! | CCGATGAGTTGAACGTGAAA+TGG | + | chr3_1:77465039-77465058 | None:intergenic | 45.0% |
| CCCATGACAACAACAAAGGA+TGG | + | chr3_1:77465398-77465417 | None:intergenic | 45.0% | |
| TGCACCCATGACAACAACAA+AGG | + | chr3_1:77465402-77465421 | None:intergenic | 45.0% | |
| ! | CGTTGAGCACCATTTTCTTC+TGG | - | chr3_1:77465427-77465446 | Msa0377100:intron | 45.0% |
| !! | ATCCTGATTCGGTACTTTGC+AGG | + | chr3_1:77465917-77465936 | None:intergenic | 45.0% |
| !!! | TTTTTTATGTTTATAAAAAT+TGG | + | chr3_1:77465258-77465277 | None:intergenic | 5.0% |
| !!! | TTTTTTATGTTTATAAAAAT+TGG | + | chr3_1:77465258-77465277 | None:intergenic | 5.0% |
| ACAGTGGGGAGAGTCAAAAG+TGG | - | chr3_1:77464839-77464858 | Msa0377100:intron | 50.0% | |
| CTGTGTGGGACATCCTGATT+CGG | + | chr3_1:77465928-77465947 | None:intergenic | 50.0% | |
| ACAGTGGGGAGAGTCAAAAG+TGG | - | chr3_1:77464839-77464858 | Msa0377100:intron | 50.0% | |
| CTGTGTGGGACATCCTGATT+CGG | + | chr3_1:77465928-77465947 | None:intergenic | 50.0% | |
| !! | GGCCTGCAAAGTACCGAATC+AGG | - | chr3_1:77465912-77465931 | Msa0377100:CDS | 55.0% |
| CGAATCAGGATGTCCCACAC+AGG | - | chr3_1:77465926-77465945 | Msa0377100:CDS | 55.0% | |
| !! | GGCCTGCAAAGTACCGAATC+AGG | - | chr3_1:77465912-77465931 | Msa0377100:CDS | 55.0% |
| CGAATCAGGATGTCCCACAC+AGG | - | chr3_1:77465926-77465945 | Msa0377100:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 77464237 | 77466165 | 77464237 | ID=Msa0377100;Name=Msa0377100 |
| chr3_1 | mRNA | 77464237 | 77466165 | 77464237 | ID=Msa0377100-mRNA-1;Parent=Msa0377100;Name=Msa0377100-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|3|0|291 |
| chr3_1 | exon | 77465727 | 77466165 | 77465727 | ID=Msa0377100-mRNA-1:exon:18535;Parent=Msa0377100-mRNA-1 |
| chr3_1 | exon | 77464954 | 77465048 | 77464954 | ID=Msa0377100-mRNA-1:exon:18534;Parent=Msa0377100-mRNA-1 |
| chr3_1 | exon | 77464237 | 77464578 | 77464237 | ID=Msa0377100-mRNA-1:exon:18533;Parent=Msa0377100-mRNA-1 |
| chr3_1 | CDS | 77465727 | 77466165 | 77465727 | ID=Msa0377100-mRNA-1:cds;Parent=Msa0377100-mRNA-1 |
| chr3_1 | CDS | 77464954 | 77465048 | 77464954 | ID=Msa0377100-mRNA-1:cds;Parent=Msa0377100-mRNA-1 |
| chr3_1 | CDS | 77464237 | 77464578 | 77464237 | ID=Msa0377100-mRNA-1:cds;Parent=Msa0377100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
