AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0377740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0377740 MtrunA17_Chr3g0128781 98.397 312 4 1 1 312 1 311 0.0 629
Msa0377740 MtrunA17_Chr5g0432701 52.366 317 131 8 7 312 51 358 3.57e-94 283
Msa0377740 MtrunA17_Chr3g0107491 46.705 349 134 11 7 312 38 377 2.22e-87 266
Msa0377740 MtrunA17_Chr2g0329551 43.056 288 89 10 7 231 72 347 9.01e-51 173
Msa0377740 MtrunA17_Chr6g0463571 48.624 218 87 6 7 201 28 243 6.41e-48 162
Msa0377740 MtrunA17_Chr4g0036071 69.492 118 36 0 90 207 341 458 1.73e-46 164
Msa0377740 MtrunA17_Chr1g0156051 51.923 156 73 1 92 247 370 523 1.21e-29 118
Msa0377740 MtrunA17_Chr2g0316551 46.316 95 51 0 107 201 206 300 3.06e-19 87.0
Msa0377740 MtrunA17_Chr2g0325131 46.809 94 50 0 108 201 190 283 8.42e-18 82.8
Msa0377740 MtrunA17_Chr4g0040891 44.681 94 52 0 108 201 193 286 3.22e-17 80.9
Msa0377740 MtrunA17_Chr1g0202051 31.053 190 119 2 24 213 51 228 4.31e-17 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0377740 AT2G40620.1 51.057 331 98 11 5 288 32 345 9.11e-84 257
Msa0377740 AT1G06850.1 51.082 231 86 4 78 301 116 326 1.52e-68 217
Msa0377740 AT2G31370.5 46.275 255 86 7 7 215 58 307 1.07e-53 180
Msa0377740 AT2G31370.2 46.275 255 86 7 7 215 58 307 1.30e-53 180
Msa0377740 AT2G31370.4 46.275 255 86 7 7 215 58 307 1.30e-53 180
Msa0377740 AT2G31370.1 46.275 255 86 7 7 215 58 307 1.30e-53 180
Msa0377740 AT2G31370.7 46.275 255 86 7 7 215 58 307 1.30e-53 180
Msa0377740 AT2G31370.3 46.275 255 86 7 7 215 58 307 1.30e-53 180
Msa0377740 AT2G31370.6 46.275 255 86 7 7 215 58 307 1.30e-53 180
Msa0377740 AT1G06070.1 45.200 250 94 6 7 217 73 318 1.28e-51 176
Msa0377740 AT4G38900.2 72.174 115 32 0 92 206 377 491 2.13e-46 164
Msa0377740 AT4G38900.3 72.174 115 32 0 92 206 377 491 2.13e-46 164
Msa0377740 AT1G43700.1 54.070 172 63 4 70 227 142 311 2.47e-46 160
Msa0377740 AT4G38900.1 68.595 121 32 1 92 206 377 497 6.02e-44 158
Msa0377740 AT2G21230.4 57.447 141 59 1 66 206 328 467 3.97e-41 150
Msa0377740 AT2G21230.1 57.447 141 59 1 66 206 328 467 3.97e-41 150
Msa0377740 AT2G21230.3 54.422 147 60 2 66 206 328 473 3.57e-38 142
Msa0377740 AT2G21230.2 55.645 124 54 1 66 189 328 450 5.99e-34 129
Msa0377740 AT1G06850.2 64.835 91 31 1 78 167 116 206 1.59e-31 118
Msa0377740 AT2G12900.1 41.667 96 56 0 109 204 116 211 4.31e-19 85.5
Msa0377740 AT3G58120.1 46.237 93 50 0 109 201 202 294 1.42e-18 85.1
Msa0377740 AT2G42380.2 41.026 117 62 1 108 217 185 301 1.85e-18 84.7
Msa0377740 AT2G12940.1 37.500 112 69 1 92 203 132 242 7.25e-17 79.7
Msa0377740 AT2G13150.1 40.594 101 59 1 101 201 142 241 7.32e-17 79.3
Msa0377740 AT2G42380.5 42.857 84 48 0 107 190 184 267 1.76e-14 72.8
Msa0377740 AT3G58120.2 43.750 80 45 0 109 188 202 281 1.11e-13 70.5
Msa0377740 AT2G21235.1 38.776 98 59 1 109 206 359 455 3.35e-13 70.5
Msa0377740 AT2G42380.1 37.607 117 55 2 108 217 185 290 3.58e-12 66.2

Find 120 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATTGTTCTGTACTTAA+TGG 0.146556 3_1:-78363314 Msa0377740:three_prime_UTR
TGATTCTATCGGCCAATTTC+AGG 0.184834 3_1:-78363823 Msa0377740:CDS
CATGTCACTACCCTGTTTAT+TGG 0.215779 3_1:-78363699 Msa0377740:three_prime_UTR
AACATGGTCCAAACGATCTT+AGG 0.241223 3_1:-78363953 Msa0377740:CDS
TTTGATTTGATTCAGGATTC+TGG 0.271099 3_1:-78366375 Msa0377740:intron
CAATGTCCAGCCCCTGAAAT+TGG 0.281734 3_1:+78363811 None:intergenic
ATGTCACTACCCTGTTTATT+GGG 0.283940 3_1:-78363698 Msa0377740:three_prime_UTR
CACAATTGAGCAAGTTTATC+AGG 0.289271 3_1:+78366497 None:intergenic
TTTCATTCCCTCTCATCTAA+TGG 0.291764 3_1:-78363912 Msa0377740:CDS
TCAAGGTACATGATCCATTA+TGG 0.303692 3_1:-78363403 Msa0377740:three_prime_UTR
GAGAAATGTTATTGAATAGA+AGG 0.335665 3_1:+78363289 None:intergenic
TTAGACTTGAAATTAATTCA+TGG 0.342642 3_1:-78363450 Msa0377740:three_prime_UTR
GTTGCGGTGGTGGTGGATCT+TGG 0.360501 3_1:+78366678 None:intergenic
GAATTAATTTCAAGTCTAAC+AGG 0.366447 3_1:+78363454 None:intergenic
AGGGGCTGGACATTGGCAAC+AGG 0.370603 3_1:-78363803 Msa0377740:CDS
CTATGAACAACCCAATAAAC+AGG 0.371418 3_1:+78363688 None:intergenic
TTCAATTATTTATTTGATTG+AGG 0.379194 3_1:-78363620 Msa0377740:three_prime_UTR
TGCATGGCCCTAAGATCGTT+TGG 0.389186 3_1:+78363945 None:intergenic
CCATGCTGATACCTATGGTT+TGG 0.391118 3_1:-78364027 Msa0377740:CDS
AAAGACCTCTTGGCGCGTTT+AGG 0.396524 3_1:+78366464 None:intergenic
GGTCGAAATCGTCGGGGATT+CGG 0.403638 3_1:+78366744 None:intergenic
GAGTTTGGATCCGGAATTAT+CGG 0.405371 3_1:+78366622 None:intergenic
TTTGCATCAAAAGGCGTTGT+TGG 0.405645 3_1:+78363731 None:intergenic
CGACGATTTCGACCTCGAAA+TGG 0.407698 3_1:-78366735 Msa0377740:CDS
TACATCGATTCCGATAATTC+CGG 0.408499 3_1:-78366632 Msa0377740:CDS
CATGCTGATACCTATGGTTT+GGG 0.409516 3_1:-78364026 Msa0377740:CDS
TTAGTAAAATTTGCATCAAA+AGG 0.417524 3_1:+78363722 None:intergenic
AAACTGAGGCTGGTGGGGAC+TGG 0.421487 3_1:+78363887 None:intergenic
TCAATTATTTATTTGATTGA+GGG 0.422899 3_1:-78363619 Msa0377740:three_prime_UTR
GATTCTATCGGCCAATTTCA+GGG 0.428325 3_1:-78363822 Msa0377740:CDS
GTGGTGGTGGATCTTGGAAC+TGG 0.429585 3_1:+78366684 None:intergenic
ACCCACTTCATATGATTTGT+CGG 0.433055 3_1:-78363859 Msa0377740:CDS
TTGTGCATAAATGACCATAA+TGG 0.434575 3_1:+78363389 None:intergenic
TATCGGCCAATTTCAGGGGC+TGG 0.448809 3_1:-78363817 Msa0377740:CDS
CATCGTTGCGGTTACCGATC+CGG 0.453334 3_1:+78366811 None:intergenic
GATAGGCTCAAGCTTGCTAC+TGG 0.454169 3_1:-78364062 Msa0377740:CDS
ATTGAGATCGACGGTGGAAC+GGG 0.455173 3_1:+78366780 None:intergenic
CATTGAAGAACGAAGTTGAT+AGG 0.457070 3_1:-78364079 Msa0377740:CDS
ATTTCGAGGTCGAAATCGTC+GGG 0.457489 3_1:+78366737 None:intergenic
TCTCATGTTCTGATGCCTGA+TGG 0.464397 3_1:-78363777 Msa0377740:CDS
GAAGACGACGGGATTCAAAC+CGG 0.472913 3_1:-78366830 Msa0377740:five_prime_UTR
GGCGGTAGGAGAATTGAGTT+TGG 0.473174 3_1:+78366607 None:intergenic
AATTGAAACAAATGTCTTCA+AGG 0.480097 3_1:-78363499 Msa0377740:three_prime_UTR
TAGCTTAGCTTGTTGCTCCA+TGG 0.487772 3_1:+78365102 None:intergenic
CTGATAAACTTGCTCAATTG+TGG 0.489201 3_1:-78366496 Msa0377740:CDS
CGTTTGGACCATGTTGTGGC+TGG 0.489619 3_1:+78363961 None:intergenic
ACAGAAACGGAGGGACCATC+AGG 0.491647 3_1:+78363762 None:intergenic
AGGAGAATTGAGTTTGGATC+CGG 0.498325 3_1:+78366613 None:intergenic
GGAATTGCTACGGCGGTGAC+CGG 0.499947 3_1:+78366577 None:intergenic
TCTTCTTCCTTGTTGTCTGA+AGG 0.501718 3_1:-78366545 Msa0377740:CDS
CCAACCCATGCTGATACCTA+TGG 0.503575 3_1:-78364032 Msa0377740:CDS
CAATTTCAGGGGCTGGACAT+TGG 0.506474 3_1:-78363810 Msa0377740:CDS
AGATCAAACTGAGGCTGGTG+GGG 0.510809 3_1:+78363882 None:intergenic
GTTCCACCGTCGATCTCAAT+CGG 0.512206 3_1:-78366777 Msa0377740:CDS
ATTATCGGAATCGATGTAAG+AGG 0.514373 3_1:+78366637 None:intergenic
ACATGGTCCAAACGATCTTA+GGG 0.515048 3_1:-78363952 Msa0377740:CDS
TAGATCAAACTGAGGCTGGT+GGG 0.518122 3_1:+78363881 None:intergenic
TCGTCGTGTTGTTGCGGTGG+TGG 0.518420 3_1:+78366668 None:intergenic
TCGTGTTGTTGCGGTGGTGG+TGG 0.524797 3_1:+78366671 None:intergenic
TCTCCTACCGCCGCTAATGC+CGG 0.526393 3_1:-78366596 Msa0377740:CDS
AAAGAAGGTTAAGTTCAGAA+AGG 0.531167 3_1:+78366924 None:intergenic
CATTTCGAGGTCGAAATCGT+CGG 0.531230 3_1:+78366736 None:intergenic
TATTTGATTGAGGGTGTATG+TGG 0.536816 3_1:-78363610 Msa0377740:three_prime_UTR
TGGGTAGATCAAACTGAGGC+TGG 0.537417 3_1:+78363877 None:intergenic
ACGGCGGTGACCGGCATTAG+CGG 0.537421 3_1:+78366586 None:intergenic
AAAATACCGAGTTGAAGCTT+CGG 0.538764 3_1:-78365132 Msa0377740:CDS
GTTATGTGGTTGAGCTTGAA+AGG 0.547036 3_1:-78366310 Msa0377740:CDS
CGGAGAAGCGTCGAAGTCGA+AGG 0.552256 3_1:+78366709 None:intergenic
ATGAAAATGTTGCATTTGCA+TGG 0.556228 3_1:+78363929 None:intergenic
TTCCGACAAATCATATGAAG+TGG 0.557296 3_1:+78363857 None:intergenic
GGGGCTGGACATTGGCAACA+GGG 0.559117 3_1:-78363802 Msa0377740:CDS
CTGCGGCGAGGTCGAAAGAG+AGG 0.561569 3_1:-78366340 Msa0377740:CDS
GATTGAGATCGACGGTGGAA+CGG 0.569204 3_1:+78366779 None:intergenic
CGGAATCGATGTAAGAGGAA+AGG 0.570255 3_1:+78366642 None:intergenic
AGGAGATCGTCGTGTTGTTG+CGG 0.570948 3_1:+78366662 None:intergenic
ATGTATCGGCGGAATTGCTA+CGG 0.574251 3_1:+78366567 None:intergenic
AGAGAGGAAAGCTTGTTATG+TGG 0.577168 3_1:-78366324 Msa0377740:CDS
AGATCGTTTGGACCATGTTG+TGG 0.578580 3_1:+78363957 None:intergenic
GACTGGATCCATTAGATGAG+AGG 0.584227 3_1:+78363904 None:intergenic
AGTCGAAGGGATCCATTTCG+AGG 0.586525 3_1:+78366723 None:intergenic
TTGATGCATTCCCAAACCAT+AGG 0.589815 3_1:+78364016 None:intergenic
GTTCAGAAAGGAAATCTCTA+CGG 0.591336 3_1:+78366936 None:intergenic
CAACAAGGAAGAAGATGTAT+CGG 0.593104 3_1:+78366553 None:intergenic
ACTGGATCCATTAGATGAGA+GGG 0.595904 3_1:+78363905 None:intergenic
GTAGATCAAACTGAGGCTGG+TGG 0.597370 3_1:+78363880 None:intergenic
ATTCTATCGGCCAATTTCAG+GGG 0.601347 3_1:-78363821 Msa0377740:CDS
GAAGCTTCGGTTACAAACCA+TGG 0.603767 3_1:-78365119 Msa0377740:CDS
CAACAAGCTAAGCTATGTGA+TGG 0.613164 3_1:-78365094 Msa0377740:intron
TTCGATTCCTTCAGACAACA+AGG 0.616363 3_1:+78366538 None:intergenic
GGAGAAGCGTCGAAGTCGAA+GGG 0.620947 3_1:+78366710 None:intergenic
TTGTAACCGAAGCTTCAACT+CGG 0.625038 3_1:+78365126 None:intergenic
TCCGACAAATCATATGAAGT+GGG 0.627186 3_1:+78363858 None:intergenic
AGATCGTCGTGTTGTTGCGG+TGG 0.629335 3_1:+78366665 None:intergenic
CTTGGCGCGTTTAGGATCAA+CGG 0.630373 3_1:+78366472 None:intergenic
ATGTTGTGGCTGGTGCATGA+AGG 0.637404 3_1:+78363971 None:intergenic
TTCATGCACCAGCCACAACA+TGG 0.640783 3_1:-78363969 Msa0377740:CDS
CCAAACCATAGGTATCAGCA+TGG 0.641882 3_1:+78364027 None:intergenic
CTCTCTCTCACACACTCGCG+CGG 0.652014 3_1:+78366876 None:intergenic
GGTGGATCTTGGAACTGGAG+CGG 0.658797 3_1:+78366689 None:intergenic
CGGGAACGACGACATCGTTG+CGG 0.659963 3_1:+78366799 None:intergenic
CCATAGGTATCAGCATGGGT+TGG 0.661247 3_1:+78364032 None:intergenic
CAAACCATAGGTATCAGCAT+GGG 0.662566 3_1:+78364028 None:intergenic
TTGATCCTAAACGCGCCAAG+AGG 0.666281 3_1:-78366469 Msa0377740:intron
GCTCAAGCTTGCTACTGGAG+AGG 0.667501 3_1:-78364057 Msa0377740:CDS
CGAATCGTCAATCTGCGGCG+AGG 0.667585 3_1:-78366352 Msa0377740:CDS
CCTCCGATTGAGATCGACGG+TGG 0.668695 3_1:+78366774 None:intergenic
CAAGGAAGAAGATGTATCGG+CGG 0.669677 3_1:+78366556 None:intergenic
CGACGGGATTCAAACCGGAT+CGG 0.671774 3_1:-78366825 Msa0377740:five_prime_UTR
TGACCGGCATTAGCGGCGGT+AGG 0.676875 3_1:+78366593 None:intergenic
ATGTTGTCAAGTGATTCTAT+CGG 0.677885 3_1:-78363834 Msa0377740:CDS
TATCGGCGGAATTGCTACGG+CGG 0.692611 3_1:+78366570 None:intergenic
CCACCGTCGATCTCAATCGG+AGG 0.695045 3_1:-78366774 Msa0377740:CDS
TGAAACAAATGTCTTCAAGG+TGG 0.697816 3_1:-78363496 Msa0377740:three_prime_UTR
GCGGTGACCGGCATTAGCGG+CGG 0.701383 3_1:+78366589 None:intergenic
GTACCTCCGATTGAGATCGA+CGG 0.703198 3_1:+78366771 None:intergenic
TATGAACAACCCAATAAACA+GGG 0.708468 3_1:+78363689 None:intergenic
TTTCGAGGTCGAAATCGTCG+GGG 0.718515 3_1:+78366738 None:intergenic
TTGACACGAGTGAGACCCAG+AGG 0.732492 3_1:-78363664 Msa0377740:three_prime_UTR
TCTGGCGAATCGTCAATCTG+CGG 0.734478 3_1:-78366357 Msa0377740:CDS
GAAGTGGGTAGATCAAACTG+AGG 0.754115 3_1:+78363873 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTTTTTTTTCCATT+GGG - chr3_1:78364904-78364923 Msa0377740:intron 10.0%
!! AAAAAAAACTAAAAAAAAAC+CGG + chr3_1:78366705-78366724 None:intergenic 10.0%
!!! TAATATTTTTGATTCAACTT+AGG + chr3_1:78364045-78364064 None:intergenic 15.0%
!! GAAAAAAAAAAAATAACCAA+AGG + chr3_1:78364900-78364919 None:intergenic 15.0%
!!! GTTATTTTTTTTTTTTCCAT+TGG - chr3_1:78364903-78364922 Msa0377740:intron 15.0%
!! ATAAATTGAGCTAAATTAAT+AGG + chr3_1:78365888-78365907 None:intergenic 15.0%
!! TTCAATTATTTATTTGATTG+AGG - chr3_1:78366632-78366651 Msa0377740:CDS 15.0%
!! TCAATTATTTATTTGATTGA+GGG - chr3_1:78366633-78366652 Msa0377740:CDS 15.0%
!!! AAAAAAGTACTAAATTTAAC+CGG - chr3_1:78366683-78366702 Msa0377740:CDS 15.0%
!! CTTTCAATGATAAAAAAAGA+AGG + chr3_1:78363346-78363365 None:intergenic 20.0%
!!! CTTCTTTTTTTATCATTGAA+AGG - chr3_1:78363344-78363363 Msa0377740:three_prime_UTR 20.0%
!! GTTGGAAATATATAGAAAAA+TGG + chr3_1:78364466-78364485 None:intergenic 20.0%
!!! ACATGATTATATATTTGTTG+TGG - chr3_1:78364113-78364132 Msa0377740:intron 20.0%
!! AAAAAAATAACCAAAGGATA+GGG + chr3_1:78364894-78364913 None:intergenic 20.0%
!! AAAAAAAATAACCAAAGGAT+AGG + chr3_1:78364895-78364914 None:intergenic 20.0%
!! ATATAAGGAATTTAACAAAC+TGG + chr3_1:78365011-78365030 None:intergenic 20.0%
!!! TAATTTTAGTCTCTTAAGTT+TGG - chr3_1:78365343-78365362 Msa0377740:intron 20.0%
!! AAACAAATGAAAGATATCTT+CGG + chr3_1:78365410-78365429 None:intergenic 20.0%
!! ATAGACAAAACATTAATGTT+TGG + chr3_1:78365510-78365529 None:intergenic 20.0%
!! TTAGTAAAATTTGCATCAAA+AGG + chr3_1:78366533-78366552 None:intergenic 20.0%
!!! ATTTGTTTCAATTCTTTTTG+GGG + chr3_1:78366746-78366765 None:intergenic 20.0%
!!! CATTTGTTTCAATTCTTTTT+GGG + chr3_1:78366747-78366766 None:intergenic 20.0%
!!! ACATTTGTTTCAATTCTTTT+TGG + chr3_1:78366748-78366767 None:intergenic 20.0%
!! TTAGACTTGAAATTAATTCA+TGG - chr3_1:78366802-78366821 Msa0377740:exon 20.0%
!!! AATGTGATTGAAAATTTTCA+AGG - chr3_1:78366832-78366851 Msa0377740:five_prime_UTR 20.0%
! AGAAAAAAAAAAGAAGACGA+CGG - chr3_1:78363410-78363429 Msa0377740:three_prime_UTR 25.0%
!!! TATATTTGTTGTGAAGCTTA+AGG - chr3_1:78364122-78364141 Msa0377740:intron 25.0%
! GCCTTCAAAAAAAAAAAAGA+GGG - chr3_1:78364840-78364859 Msa0377740:intron 25.0%
!!! TCCCTCTTTTTTTTTTTTGA+AGG + chr3_1:78364844-78364863 None:intergenic 25.0%
! AGTTCAATTAAAGGAAACAA+AGG + chr3_1:78364982-78365001 None:intergenic 25.0%
! TTGTTTCCTTTAATTGAACT+TGG - chr3_1:78364982-78365001 Msa0377740:intron 25.0%
! TGTTAAATTCCTTATATCAG+TGG - chr3_1:78365014-78365033 Msa0377740:intron 25.0%
! TTCCATCAGTATAATATGAA+AGG - chr3_1:78365258-78365277 Msa0377740:intron 25.0%
! TCAGTGTTAAACTAAGTTAA+TGG + chr3_1:78365284-78365303 None:intergenic 25.0%
! GATATTCTAACAGAAACTAT+AGG + chr3_1:78365388-78365407 None:intergenic 25.0%
!! TCATTGAATTGAAAAGTATG+AGG + chr3_1:78365480-78365499 None:intergenic 25.0%
! ACAAAACATTAATGTTTGGA+CGG + chr3_1:78365506-78365525 None:intergenic 25.0%
! TACAGCATTTATCCTTTAAA+TGG + chr3_1:78365601-78365620 None:intergenic 25.0%
! AAAAAATTACATGTCATACG+AGG + chr3_1:78365671-78365690 None:intergenic 25.0%
! TAGCTTACATTCTTAGTAAT+TGG - chr3_1:78365746-78365765 Msa0377740:intron 25.0%
! TTACATTCTTAGTAATTGGA+TGG - chr3_1:78365750-78365769 Msa0377740:intron 25.0%
! ATTTATCACTACTTCAACTA+AGG - chr3_1:78365944-78365963 Msa0377740:intron 25.0%
!!! AAAACAGAAACACTACTTTT+AGG + chr3_1:78366051-78366070 None:intergenic 25.0%
!!! GTTGGTTTTATTAACAGAAA+CGG + chr3_1:78366506-78366525 None:intergenic 25.0%
! AACAAAAAATCAATACCTCT+GGG + chr3_1:78366606-78366625 None:intergenic 25.0%
! AAACAAAAAATCAATACCTC+TGG + chr3_1:78366607-78366626 None:intergenic 25.0%
! AATTGAAACAAATGTCTTCA+AGG - chr3_1:78366753-78366772 Msa0377740:CDS 25.0%
!! GAATTAATTTCAAGTCTAAC+AGG + chr3_1:78366801-78366820 None:intergenic 25.0%
! TTCAATTGTTCTGTACTTAA+TGG - chr3_1:78366938-78366957 Msa0377740:five_prime_UTR 25.0%
! GAGAAATGTTATTGAATAGA+AGG + chr3_1:78366966-78366985 None:intergenic 25.0%
AAAGAAGGTTAAGTTCAGAA+AGG + chr3_1:78363331-78363350 None:intergenic 30.0%
GAAAAAAAAAAGAAGACGAC+GGG - chr3_1:78363411-78363430 Msa0377740:three_prime_UTR 30.0%
!!! GAACTTGTTTTTATAGATCG+TGG - chr3_1:78363853-78363872 Msa0377740:CDS 30.0%
!! TTTGATTTGATTCAGGATTC+TGG - chr3_1:78363877-78363896 Msa0377740:CDS 30.0%
! TGCTCAATTAAATCTTTTCC+AGG - chr3_1:78364003-78364022 Msa0377740:CDS 30.0%
TGGAAGAAATAGAAGACATT+GGG - chr3_1:78364206-78364225 Msa0377740:intron 30.0%
AATAAAAAATCCCCCTCATT+TGG - chr3_1:78364263-78364282 Msa0377740:intron 30.0%
ATAAAAAATCCCCCTCATTT+GGG - chr3_1:78364264-78364283 Msa0377740:intron 30.0%
GGCCTTCAAAAAAAAAAAAG+AGG - chr3_1:78364839-78364858 Msa0377740:intron 30.0%
!!! TTTTTTTTCCATTGGGCTAT+TGG - chr3_1:78364911-78364930 Msa0377740:intron 30.0%
!! TGGCAGTTCATTTTTCAAAA+TGG - chr3_1:78364951-78364970 Msa0377740:intron 30.0%
TGGAAACCAAGTTCAATTAA+AGG + chr3_1:78364991-78365010 None:intergenic 30.0%
TAAATTCCTTATATCAGTGG+TGG - chr3_1:78365017-78365036 Msa0377740:intron 30.0%
AAATTCCTTATATCAGTGGT+GGG - chr3_1:78365018-78365037 Msa0377740:intron 30.0%
TAAAGTGTAGCATATTTGCA+TGG + chr3_1:78365194-78365213 None:intergenic 30.0%
CAGCAAAACAAGAAAAAACA+AGG + chr3_1:78365220-78365239 None:intergenic 30.0%
!!! CTTGTTTTTTCTTGTTTTGC+TGG - chr3_1:78365218-78365237 Msa0377740:intron 30.0%
CACTGAATTAATGTAAGCAT+CGG - chr3_1:78365298-78365317 Msa0377740:intron 30.0%
TATTAATATTTGAGCCTACG+TGG - chr3_1:78365531-78365550 Msa0377740:intron 30.0%
!! CAGCTCATTTAGTTTGTAAT+TGG + chr3_1:78365625-78365644 None:intergenic 30.0%
CAATTACAAACTAAATGAGC+TGG - chr3_1:78365623-78365642 Msa0377740:intron 30.0%
TTGGATGGTATATTAACACT+TGG - chr3_1:78365765-78365784 Msa0377740:intron 30.0%
! TTCATTCATTTGGAAAGTGT+GGG - chr3_1:78365795-78365814 Msa0377740:intron 30.0%
GAAGTAGTGATAAATGAACA+TGG + chr3_1:78365939-78365958 None:intergenic 30.0%
ATGTACAACGATTTGAAAAC+TGG + chr3_1:78366019-78366038 None:intergenic 30.0%
ATGAAAATGTTGCATTTGCA+TGG + chr3_1:78366326-78366345 None:intergenic 30.0%
ATGTTGTCAAGTGATTCTAT+CGG - chr3_1:78366418-78366437 Msa0377740:intron 30.0%
!! GTTTTATTAACAGAAACGGA+GGG + chr3_1:78366502-78366521 None:intergenic 30.0%
TATGAACAACCCAATAAACA+GGG + chr3_1:78366566-78366585 None:intergenic 30.0%
TTGTGCATAAATGACCATAA+TGG + chr3_1:78366866-78366885 None:intergenic 30.0%
GTTCAGAAAGGAAATCTCTA+CGG + chr3_1:78363319-78363338 None:intergenic 35.0%
ATTATCGGAATCGATGTAAG+AGG + chr3_1:78363618-78363637 None:intergenic 35.0%
!! TACATCGATTCCGATAATTC+CGG - chr3_1:78363620-78363639 Msa0377740:three_prime_UTR 35.0%
CAACAAGGAAGAAGATGTAT+CGG + chr3_1:78363702-78363721 None:intergenic 35.0%
CACAATTGAGCAAGTTTATC+AGG + chr3_1:78363758-78363777 None:intergenic 35.0%
! CTGATAAACTTGCTCAATTG+TGG - chr3_1:78363756-78363775 Msa0377740:CDS 35.0%
GCATTAAAAGAAAGACCTCT+TGG + chr3_1:78363801-78363820 None:intergenic 35.0%
!! TCGTGGATTTGATTTGATTC+AGG - chr3_1:78363870-78363889 Msa0377740:CDS 35.0%
!! TGAAGCTTAAGGCTTTGTTT+GGG - chr3_1:78364133-78364152 Msa0377740:intron 35.0%
GTGGAAGAAATAGAAGACAT+TGG - chr3_1:78364205-78364224 Msa0377740:intron 35.0%
AAGAAATAGAAGACATTGGG+AGG - chr3_1:78364209-78364228 Msa0377740:intron 35.0%
TAAAAAATCCCCCTCATTTG+GGG - chr3_1:78364265-78364284 Msa0377740:intron 35.0%
GGGAACTCAAAAATTGCATT+GGG - chr3_1:78364286-78364305 Msa0377740:intron 35.0%
GGAACTCAAAAATTGCATTG+GGG - chr3_1:78364287-78364306 Msa0377740:intron 35.0%
GAACTCAAAAATTGCATTGG+GGG - chr3_1:78364288-78364307 Msa0377740:intron 35.0%
ATTAACTACACAGCCCATTT+AGG + chr3_1:78364535-78364554 None:intergenic 35.0%
!! ATTTGTTGTGGCCATTAATG+AGG - chr3_1:78364724-78364743 Msa0377740:intron 35.0%
! TTTGTTGTGGCCATTAATGA+GGG - chr3_1:78364725-78364744 Msa0377740:intron 35.0%
TCGTATGAAGATTCTGTTCA+AGG - chr3_1:78364762-78364781 Msa0377740:intron 35.0%
CGTATGAAGATTCTGTTCAA+GGG - chr3_1:78364763-78364782 Msa0377740:intron 35.0%
!!! CTTTTTCAGAGAGATACAAC+TGG - chr3_1:78365086-78365105 Msa0377740:intron 35.0%
! AAAATACCGAGTTGAAGCTT+CGG - chr3_1:78365120-78365139 Msa0377740:CDS 35.0%
GGCCTTTCATATTATACTGA+TGG + chr3_1:78365263-78365282 None:intergenic 35.0%
AGTCTCTTAAGTTTGGTAGA+TGG - chr3_1:78365350-78365369 Msa0377740:intron 35.0%
GTCTCTTAAGTTTGGTAGAT+GGG - chr3_1:78365351-78365370 Msa0377740:intron 35.0%
TGACATGGTAGTCCATTTAA+AGG - chr3_1:78365586-78365605 Msa0377740:intron 35.0%
TGGTCTAGACTTCATTCATT+TGG - chr3_1:78365785-78365804 Msa0377740:intron 35.0%
CTTCATTCATTTGGAAAGTG+TGG - chr3_1:78365794-78365813 Msa0377740:intron 35.0%
TTAATAGGATGTCAACCGAA+AGG + chr3_1:78365873-78365892 None:intergenic 35.0%
!!! GGTTTTGATTCATGGTTCAT+TGG + chr3_1:78365975-78365994 None:intergenic 35.0%
!!! GTAGTGAAGGTTTTGATTCA+TGG + chr3_1:78365983-78366002 None:intergenic 35.0%
ACTAGTCATTGAAGTAGTGA+AGG + chr3_1:78365996-78366015 None:intergenic 35.0%
! CATTGAAGAACGAAGTTGAT+AGG - chr3_1:78366173-78366192 Msa0377740:intron 35.0%
TTTCATTCCCTCTCATCTAA+TGG - chr3_1:78366340-78366359 Msa0377740:CDS 35.0%
! ACCCACTTCATATGATTTGT+CGG - chr3_1:78366393-78366412 Msa0377740:intron 35.0%
TCCGACAAATCATATGAAGT+GGG + chr3_1:78366397-78366416 None:intergenic 35.0%
TTCCGACAAATCATATGAAG+TGG + chr3_1:78366398-78366417 None:intergenic 35.0%
!!! GGTTTTATTAACAGAAACGG+AGG + chr3_1:78366503-78366522 None:intergenic 35.0%
ATGTCACTACCCTGTTTATT+GGG - chr3_1:78366554-78366573 Msa0377740:CDS 35.0%
CTATGAACAACCCAATAAAC+AGG + chr3_1:78366567-78366586 None:intergenic 35.0%
! TATTTGATTGAGGGTGTATG+TGG - chr3_1:78366642-78366661 Msa0377740:CDS 35.0%
TGAAACAAATGTCTTCAAGG+TGG - chr3_1:78366756-78366775 Msa0377740:CDS 35.0%
TCAAGGTACATGATCCATTA+TGG - chr3_1:78366849-78366868 Msa0377740:five_prime_UTR 35.0%
GAGTTTGGATCCGGAATTAT+CGG + chr3_1:78363633-78363652 None:intergenic 40.0%
AGGAGAATTGAGTTTGGATC+CGG + chr3_1:78363642-78363661 None:intergenic 40.0%
! TCTTCTTCCTTGTTGTCTGA+AGG - chr3_1:78363707-78363726 Msa0377740:three_prime_UTR 40.0%
TTCGATTCCTTCAGACAACA+AGG + chr3_1:78363717-78363736 None:intergenic 40.0%
!! AGAGAGGAAAGCTTGTTATG+TGG - chr3_1:78363928-78363947 Msa0377740:CDS 40.0%
GTTATGTGGTTGAGCTTGAA+AGG - chr3_1:78363942-78363961 Msa0377740:CDS 40.0%
GGCAATGATGAGTAATAACC+TGG + chr3_1:78364024-78364043 None:intergenic 40.0%
!! GTGAAGCTTAAGGCTTTGTT+TGG - chr3_1:78364132-78364151 Msa0377740:intron 40.0%
!! TAAGGCTTTGTTTGGGAGTT+TGG - chr3_1:78364140-78364159 Msa0377740:intron 40.0%
!!! GAGGGTTTTGGAAAAAAGGA+AGG - chr3_1:78364177-78364196 Msa0377740:intron 40.0%
AAAAAATCCCCCTCATTTGG+GGG - chr3_1:78364266-78364285 Msa0377740:intron 40.0%
!!! TTTTGAGTTCCCCCAAATGA+GGG + chr3_1:78364278-78364297 None:intergenic 40.0%
!!! TTTTTGAGTTCCCCCAAATG+AGG + chr3_1:78364279-78364298 None:intergenic 40.0%
GGGGAACTCAAAAATTGCAT+TGG - chr3_1:78364285-78364304 Msa0377740:intron 40.0%
TCAAAAATTGCATTGGGGGA+GGG - chr3_1:78364292-78364311 Msa0377740:intron 40.0%
!! TTAGGCTTTGTTTGGGAGTT+TGG + chr3_1:78364517-78364536 None:intergenic 40.0%
ACTCCCAAACAAAGCCTAAA+TGG - chr3_1:78364518-78364537 Msa0377740:intron 40.0%
CTCCCAAACAAAGCCTAAAT+GGG - chr3_1:78364519-78364538 Msa0377740:intron 40.0%
!! AGCCCATTTAGGCTTTGTTT+GGG + chr3_1:78364524-78364543 None:intergenic 40.0%
AGTGATAAATCCGATCAGAG+AGG - chr3_1:78364568-78364587 Msa0377740:intron 40.0%
ATAAATCCGATCAGAGAGGT+AGG - chr3_1:78364572-78364591 Msa0377740:intron 40.0%
TTTCAACCTACCTCTCTGAT+CGG + chr3_1:78364581-78364600 None:intergenic 40.0%
! ATCAGAGAGGTAGGTTGAAA+TGG - chr3_1:78364581-78364600 Msa0377740:intron 40.0%
AAGTTAGGGAGAGAGCAATA+AGG - chr3_1:78364661-78364680 Msa0377740:intron 40.0%
AGTTAGGGAGAGAGCAATAA+GGG - chr3_1:78364662-78364681 Msa0377740:intron 40.0%
! ATAGGGTAACTGTTCTGGAT+TGG + chr3_1:78364877-78364896 None:intergenic 40.0%
AAAGGATAGGGTAACTGTTC+TGG + chr3_1:78364882-78364901 None:intergenic 40.0%
AGAACAGTTACCCTATCCTT+TGG - chr3_1:78364881-78364900 Msa0377740:intron 40.0%
AAAGCAAACCAATAGCCCAA+TGG + chr3_1:78364922-78364941 None:intergenic 40.0%
!!! TGGTTTGCTTTTCACTCTTG+TGG - chr3_1:78364931-78364950 Msa0377740:intron 40.0%
TTGTAACCGAAGCTTCAACT+CGG + chr3_1:78365129-78365148 None:intergenic 40.0%
CAACAAGCTAAGCTATGTGA+TGG - chr3_1:78365158-78365177 Msa0377740:CDS 40.0%
! ATTTGAGCCTACGTGGATTA+TGG - chr3_1:78365538-78365557 Msa0377740:intron 40.0%
TCACAAACCATAATCCACGT+AGG + chr3_1:78365548-78365567 None:intergenic 40.0%
CTACAGTGATTGAAGCCTTT+CGG - chr3_1:78365855-78365874 Msa0377740:intron 40.0%
CAAACCATAGGTATCAGCAT+GGG + chr3_1:78366227-78366246 None:intergenic 40.0%
CATGCTGATACCTATGGTTT+GGG - chr3_1:78366226-78366245 Msa0377740:intron 40.0%
TTGATGCATTCCCAAACCAT+AGG + chr3_1:78366239-78366258 None:intergenic 40.0%
AACATGGTCCAAACGATCTT+AGG - chr3_1:78366299-78366318 Msa0377740:CDS 40.0%
ACATGGTCCAAACGATCTTA+GGG - chr3_1:78366300-78366319 Msa0377740:CDS 40.0%
ACTGGATCCATTAGATGAGA+GGG + chr3_1:78366350-78366369 None:intergenic 40.0%
TGATTCTATCGGCCAATTTC+AGG - chr3_1:78366429-78366448 Msa0377740:intron 40.0%
GATTCTATCGGCCAATTTCA+GGG - chr3_1:78366430-78366449 Msa0377740:intron 40.0%
ATTCTATCGGCCAATTTCAG+GGG - chr3_1:78366431-78366450 Msa0377740:intron 40.0%
!! TTTGCATCAAAAGGCGTTGT+TGG + chr3_1:78366524-78366543 None:intergenic 40.0%
CATGTCACTACCCTGTTTAT+TGG - chr3_1:78366553-78366572 Msa0377740:CDS 40.0%
ATTTCGAGGTCGAAATCGTC+GGG + chr3_1:78363518-78363537 None:intergenic 45.0%
CATTTCGAGGTCGAAATCGT+CGG + chr3_1:78363519-78363538 None:intergenic 45.0%
CGGAATCGATGTAAGAGGAA+AGG + chr3_1:78363613-78363632 None:intergenic 45.0%
! ATGTATCGGCGGAATTGCTA+CGG + chr3_1:78363688-78363707 None:intergenic 45.0%
CAAGGAAGAAGATGTATCGG+CGG + chr3_1:78363699-78363718 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG - chr3_1:78364144-78364163 Msa0377740:intron 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG - chr3_1:78364145-78364164 Msa0377740:intron 45.0%
!!! AGGGGAGGGTTTTGGAAAAA+AGG - chr3_1:78364173-78364192 Msa0377740:intron 45.0%
GGAAAAAAGGAAGGAGCAAG+TGG - chr3_1:78364186-78364205 Msa0377740:intron 45.0%
ATAGAAGACATTGGGAGGAG+AGG - chr3_1:78364214-78364233 Msa0377740:intron 45.0%
TAGAAGACATTGGGAGGAGA+GGG - chr3_1:78364215-78364234 Msa0377740:intron 45.0%
! TTTGAGTTCCCCCAAATGAG+GGG + chr3_1:78364277-78364296 None:intergenic 45.0%
CTCAAAAATTGCATTGGGGG+AGG - chr3_1:78364291-78364310 Msa0377740:intron 45.0%
CAAAAATTGCATTGGGGGAG+GGG - chr3_1:78364293-78364312 Msa0377740:intron 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG + chr3_1:78364145-78364164 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG + chr3_1:78364144-78364163 None:intergenic 45.0%
!! CAGCCCATTTAGGCTTTGTT+TGG + chr3_1:78364525-78364544 None:intergenic 45.0%
CGTCTGTAGCGATGACATTA+GGG - chr3_1:78364611-78364630 Msa0377740:intron 45.0%
GTCTGTAGCGATGACATTAG+GGG - chr3_1:78364612-78364631 Msa0377740:intron 45.0%
AGCACTCTGACGCTTAAGTT+AGG - chr3_1:78364646-78364665 Msa0377740:intron 45.0%
GCACTCTGACGCTTAAGTTA+GGG - chr3_1:78364647-78364666 Msa0377740:intron 45.0%
TTGTGGCCATTAATGAGGGT+TGG - chr3_1:78364729-78364748 Msa0377740:intron 45.0%
TGTGGCCATTAATGAGGGTT+GGG - chr3_1:78364730-78364749 Msa0377740:intron 45.0%
AACGTCCCAACCCTCATTAA+TGG + chr3_1:78364738-78364757 None:intergenic 45.0%
TAATGAGGGTTGGGACGTTA+TGG - chr3_1:78364739-78364758 Msa0377740:intron 45.0%
TGTTCAAGGGAATCTGTGTG+TGG - chr3_1:78364776-78364795 Msa0377740:intron 45.0%
GTTCAAGGGAATCTGTGTGT+GGG - chr3_1:78364777-78364796 Msa0377740:intron 45.0%
TTGGACTCCACCATATTCAC+AGG - chr3_1:78364809-78364828 Msa0377740:intron 45.0%
ACCATATTCACAGGTGGAGT+GGG - chr3_1:78364818-78364837 Msa0377740:intron 45.0%
GAAAGCCCACCACTGATATA+AGG + chr3_1:78365026-78365045 None:intergenic 45.0%
GAAGCTTCGGTTACAAACCA+TGG - chr3_1:78365133-78365152 Msa0377740:CDS 45.0%
!! TAGCTTAGCTTGTTGCTCCA+TGG + chr3_1:78365153-78365172 None:intergenic 45.0%
GTCAACTGTCTCAGATGACA+TGG - chr3_1:78365571-78365590 Msa0377740:intron 45.0%
! TTTGGAAAGTGTGGGTGACT+TGG - chr3_1:78365803-78365822 Msa0377740:intron 45.0%
CCAAACCATAGGTATCAGCA+TGG + chr3_1:78366228-78366247 None:intergenic 45.0%
CCATGCTGATACCTATGGTT+TGG - chr3_1:78366225-78366244 Msa0377740:intron 45.0%
AGATCGTTTGGACCATGTTG+TGG + chr3_1:78366298-78366317 None:intergenic 45.0%
GACTGGATCCATTAGATGAG+AGG + chr3_1:78366351-78366370 None:intergenic 45.0%
TAGATCAAACTGAGGCTGGT+GGG + chr3_1:78366374-78366393 None:intergenic 45.0%
GAAGTGGGTAGATCAAACTG+AGG + chr3_1:78366382-78366401 None:intergenic 45.0%
TCTCATGTTCTGATGCCTGA+TGG - chr3_1:78366475-78366494 Msa0377740:CDS 45.0%
!!! ATAATTATTATTTTTAAAAC+TGG + chr3_1:78366127-78366146 None:intergenic 5.0%
TGTGTGAGAGAGAGAGAGAG+CGG - chr3_1:78363385-78363404 Msa0377740:three_prime_UTR 50.0%
GAAGACGACGGGATTCAAAC+CGG - chr3_1:78363422-78363441 Msa0377740:three_prime_UTR 50.0%
ATTGAGATCGACGGTGGAAC+GGG + chr3_1:78363475-78363494 None:intergenic 50.0%
GATTGAGATCGACGGTGGAA+CGG + chr3_1:78363476-78363495 None:intergenic 50.0%
GTTCCACCGTCGATCTCAAT+CGG - chr3_1:78363475-78363494 Msa0377740:three_prime_UTR 50.0%
GTACCTCCGATTGAGATCGA+CGG + chr3_1:78363484-78363503 None:intergenic 50.0%
TTTCGAGGTCGAAATCGTCG+GGG + chr3_1:78363517-78363536 None:intergenic 50.0%
CGACGATTTCGACCTCGAAA+TGG - chr3_1:78363517-78363536 Msa0377740:three_prime_UTR 50.0%
AGTCGAAGGGATCCATTTCG+AGG + chr3_1:78363532-78363551 None:intergenic 50.0%
! AGGAGATCGTCGTGTTGTTG+CGG + chr3_1:78363593-78363612 None:intergenic 50.0%
GGCGGTAGGAGAATTGAGTT+TGG + chr3_1:78363648-78363667 None:intergenic 50.0%
! CTTGGCGCGTTTAGGATCAA+CGG + chr3_1:78363783-78363802 None:intergenic 50.0%
TTGATCCTAAACGCGCCAAG+AGG - chr3_1:78363783-78363802 Msa0377740:CDS 50.0%
AAAGACCTCTTGGCGCGTTT+AGG + chr3_1:78363791-78363810 None:intergenic 50.0%
TCTGGCGAATCGTCAATCTG+CGG - chr3_1:78363895-78363914 Msa0377740:CDS 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG - chr3_1:78364143-78364162 Msa0377740:intron 50.0%
TTGAGTTCCCCCAAATGAGG+GGG + chr3_1:78364276-78364295 None:intergenic 50.0%
TTTGGGAGTTTGGAGGGGAA+GGG + chr3_1:78364507-78364526 None:intergenic 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG + chr3_1:78364143-78364162 None:intergenic 50.0%
GCGTCTGTAGCGATGACATT+AGG - chr3_1:78364610-78364629 Msa0377740:intron 50.0%
TGTAGCGATGACATTAGGGG+TGG - chr3_1:78364615-78364634 Msa0377740:intron 50.0%
TGTGTGTGGGAACGTCGAAT+TGG - chr3_1:78364790-78364809 Msa0377740:intron 50.0%
GACTCCACCATATTCACAGG+TGG - chr3_1:78364812-78364831 Msa0377740:intron 50.0%
CACTCCACCTGTGAATATGG+TGG + chr3_1:78364819-78364838 None:intergenic 50.0%
CACCATATTCACAGGTGGAG+TGG - chr3_1:78364817-78364836 Msa0377740:intron 50.0%
TGCAACGACTTGAGCTGACA+TGG + chr3_1:78365703-78365722 None:intergenic 50.0%
!! GATAGGCTCAAGCTTGCTAC+TGG - chr3_1:78366190-78366209 Msa0377740:intron 50.0%
CCATAGGTATCAGCATGGGT+TGG + chr3_1:78366223-78366242 None:intergenic 50.0%
CCAACCCATGCTGATACCTA+TGG - chr3_1:78366220-78366239 Msa0377740:intron 50.0%
ATGTTGTGGCTGGTGCATGA+AGG + chr3_1:78366284-78366303 None:intergenic 50.0%
TTCATGCACCAGCCACAACA+TGG - chr3_1:78366283-78366302 Msa0377740:CDS 50.0%
TGCATGGCCCTAAGATCGTT+TGG + chr3_1:78366310-78366329 None:intergenic 50.0%
AGATCAAACTGAGGCTGGTG+GGG + chr3_1:78366373-78366392 None:intergenic 50.0%
GTAGATCAAACTGAGGCTGG+TGG + chr3_1:78366375-78366394 None:intergenic 50.0%
TGGGTAGATCAAACTGAGGC+TGG + chr3_1:78366378-78366397 None:intergenic 50.0%
CAATGTCCAGCCCCTGAAAT+TGG + chr3_1:78366444-78366463 None:intergenic 50.0%
CAATTTCAGGGGCTGGACAT+TGG - chr3_1:78366442-78366461 Msa0377740:intron 50.0%
CGACGGGATTCAAACCGGAT+CGG - chr3_1:78363427-78363446 Msa0377740:three_prime_UTR 55.0%
CATCGTTGCGGTTACCGATC+CGG + chr3_1:78363444-78363463 None:intergenic 55.0%
GGTCGAAATCGTCGGGGATT+CGG + chr3_1:78363511-78363530 None:intergenic 55.0%
!! GGAGAAGCGTCGAAGTCGAA+GGG + chr3_1:78363545-78363564 None:intergenic 55.0%
GGTGGATCTTGGAACTGGAG+CGG + chr3_1:78363566-78363585 None:intergenic 55.0%
!! GTGGTGGTGGATCTTGGAAC+TGG + chr3_1:78363571-78363590 None:intergenic 55.0%
! AGATCGTCGTGTTGTTGCGG+TGG + chr3_1:78363590-78363609 None:intergenic 55.0%
TATCGGCGGAATTGCTACGG+CGG + chr3_1:78363685-78363704 None:intergenic 55.0%
TGTTTGGGAGTTTGGAGGGG+AGG - chr3_1:78364148-78364167 Msa0377740:intron 55.0%
GTTTGGGAGTTTGGAGGGGA+GGG - chr3_1:78364149-78364168 Msa0377740:intron 55.0%
TTTGGGAGTTTGGAGGGGAG+GGG - chr3_1:78364150-78364169 Msa0377740:intron 55.0%
ATTGCATTGGGGGAGGGGTT+TGG - chr3_1:78364298-78364317 Msa0377740:intron 55.0%
TTGCATTGGGGGAGGGGTTT+GGG - chr3_1:78364299-78364318 Msa0377740:intron 55.0%
GTTTGGGAGTTTGGAGGGGA+AGG + chr3_1:78364149-78364168 None:intergenic 55.0%
GCCCACTCCACCTGTGAATA+TGG + chr3_1:78364822-78364841 None:intergenic 55.0%
CGACTTGAGCTGACATGGCA+TGG + chr3_1:78365698-78365717 None:intergenic 55.0%
!! GCTCAAGCTTGCTACTGGAG+AGG - chr3_1:78366195-78366214 Msa0377740:intron 55.0%
CGTTTGGACCATGTTGTGGC+TGG + chr3_1:78366294-78366313 None:intergenic 55.0%
TATCGGCCAATTTCAGGGGC+TGG - chr3_1:78366435-78366454 Msa0377740:intron 55.0%
ACAGAAACGGAGGGACCATC+AGG + chr3_1:78366493-78366512 None:intergenic 55.0%
TTGACACGAGTGAGACCCAG+AGG - chr3_1:78366588-78366607 Msa0377740:CDS 55.0%
CTCTCTCTCACACACTCGCG+CGG + chr3_1:78363379-78363398 None:intergenic 60.0%
CGGGAACGACGACATCGTTG+CGG + chr3_1:78363456-78363475 None:intergenic 60.0%
CCTCCGATTGAGATCGACGG+TGG + chr3_1:78363481-78363500 None:intergenic 60.0%
CCACCGTCGATCTCAATCGG+AGG - chr3_1:78363478-78363497 Msa0377740:three_prime_UTR 60.0%
!! CGGAGAAGCGTCGAAGTCGA+AGG + chr3_1:78363546-78363565 None:intergenic 60.0%
!! GTTGCGGTGGTGGTGGATCT+TGG + chr3_1:78363577-78363596 None:intergenic 60.0%
! TCGTGTTGTTGCGGTGGTGG+TGG + chr3_1:78363584-78363603 None:intergenic 60.0%
! TCGTCGTGTTGTTGCGGTGG+TGG + chr3_1:78363587-78363606 None:intergenic 60.0%
TCTCCTACCGCCGCTAATGC+CGG - chr3_1:78363656-78363675 Msa0377740:three_prime_UTR 60.0%
GGAATTGCTACGGCGGTGAC+CGG + chr3_1:78363678-78363697 None:intergenic 60.0%
CGAATCGTCAATCTGCGGCG+AGG - chr3_1:78363900-78363919 Msa0377740:CDS 60.0%
TGCATTGGGGGAGGGGTTTG+GGG - chr3_1:78364300-78364319 Msa0377740:intron 60.0%
AGGGGTTTGGGGGGTTATGG+AGG - chr3_1:78364311-78364330 Msa0377740:intron 60.0%
GGGGTTTGGGGGGTTATGGA+GGG - chr3_1:78364312-78364331 Msa0377740:intron 60.0%
GAGTTTGGAGGGGAAGGGAG+GGG + chr3_1:78364502-78364521 None:intergenic 60.0%
GGAGTTTGGAGGGGAAGGGA+GGG + chr3_1:78364503-78364522 None:intergenic 60.0%
AAACTGAGGCTGGTGGGGAC+TGG + chr3_1:78366368-78366387 None:intergenic 60.0%
AGGGGCTGGACATTGGCAAC+AGG - chr3_1:78366449-78366468 Msa0377740:intron 60.0%
GGGGCTGGACATTGGCAACA+GGG - chr3_1:78366450-78366469 Msa0377740:intron 60.0%
TGACCGGCATTAGCGGCGGT+AGG + chr3_1:78363662-78363681 None:intergenic 65.0%
ACGGCGGTGACCGGCATTAG+CGG + chr3_1:78363669-78363688 None:intergenic 65.0%
CTGCGGCGAGGTCGAAAGAG+AGG - chr3_1:78363912-78363931 Msa0377740:CDS 65.0%
GGAGTTTGGAGGGGAGGGGA+GGG - chr3_1:78364154-78364173 Msa0377740:intron 65.0%
GAGTTTGGAGGGGAGGGGAG+GGG - chr3_1:78364155-78364174 Msa0377740:intron 65.0%
GCATTGGGGGAGGGGTTTGG+GGG - chr3_1:78364301-78364320 Msa0377740:intron 65.0%
CATTGGGGGAGGGGTTTGGG+GGG - chr3_1:78364302-78364321 Msa0377740:intron 65.0%
GGGAGGGGTTTGGGGGGTTA+TGG - chr3_1:78364308-78364327 Msa0377740:intron 65.0%
! AAGGGAGGGGAGGGCTTTGG+GGG + chr3_1:78364489-78364508 None:intergenic 65.0%
GAAGGGAGGGGAGGGCTTTG+GGG + chr3_1:78364490-78364509 None:intergenic 65.0%
GGAAGGGAGGGGAGGGCTTT+GGG + chr3_1:78364491-78364510 None:intergenic 65.0%
TTGGAGGGGAAGGGAGGGGA+GGG + chr3_1:78364498-78364517 None:intergenic 65.0%
TTTGGAGGGGAAGGGAGGGG+AGG + chr3_1:78364499-78364518 None:intergenic 65.0%
GGGAGTTTGGAGGGGAAGGG+AGG + chr3_1:78364504-78364523 None:intergenic 65.0%
GCGGTGACCGGCATTAGCGG+CGG + chr3_1:78363666-78363685 None:intergenic 70.0%
GGGAGTTTGGAGGGGAGGGG+AGG - chr3_1:78364153-78364172 Msa0377740:intron 70.0%
TTTGGAGGGGAGGGGAGGGG+AGG - chr3_1:78364158-78364177 Msa0377740:intron 70.0%
TTGGAGGGGAGGGGAGGGGA+GGG - chr3_1:78364159-78364178 Msa0377740:intron 70.0%
! GGGAGGGGAGGGGAGGGTTT+TGG - chr3_1:78364165-78364184 Msa0377740:intron 70.0%
!! AGGGGAGGGCTTTGGGGGGT+TGG + chr3_1:78364484-78364503 None:intergenic 70.0%
!! AGGGAGGGGAGGGCTTTGGG+GGG + chr3_1:78364488-78364507 None:intergenic 70.0%
GGGAAGGGAGGGGAGGGCTT+TGG + chr3_1:78364492-78364511 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 78363283 78366991 78363283 ID=Msa0377740;Name=Msa0377740
chr3_1 mRNA 78363283 78366991 78363283 ID=Msa0377740-mRNA-1;Parent=Msa0377740;Name=Msa0377740-mRNA-1;_AED=0.07;_eAED=0.07;_QI=178|1|1|1|1|1|4|454|312
chr3_1 exon 78363283 78364113 78363283 ID=Msa0377740-mRNA-1:exon:18868;Parent=Msa0377740-mRNA-1
chr3_1 exon 78365095 78365179 78365095 ID=Msa0377740-mRNA-1:exon:18867;Parent=Msa0377740-mRNA-1
chr3_1 exon 78366250 78366382 78366250 ID=Msa0377740-mRNA-1:exon:18866;Parent=Msa0377740-mRNA-1
chr3_1 exon 78366470 78366991 78366470 ID=Msa0377740-mRNA-1:exon:18865;Parent=Msa0377740-mRNA-1
chr3_1 five_prime_UTR 78366814 78366991 78366814 ID=Msa0377740-mRNA-1:five_prime_utr;Parent=Msa0377740-mRNA-1
chr3_1 CDS 78366470 78366813 78366470 ID=Msa0377740-mRNA-1:cds;Parent=Msa0377740-mRNA-1
chr3_1 CDS 78366250 78366382 78366250 ID=Msa0377740-mRNA-1:cds;Parent=Msa0377740-mRNA-1
chr3_1 CDS 78365095 78365179 78365095 ID=Msa0377740-mRNA-1:cds;Parent=Msa0377740-mRNA-1
chr3_1 CDS 78363737 78364113 78363737 ID=Msa0377740-mRNA-1:cds;Parent=Msa0377740-mRNA-1
chr3_1 three_prime_UTR 78363283 78363736 78363283 ID=Msa0377740-mRNA-1:three_prime_utr;Parent=Msa0377740-mRNA-1
Gene Sequence

>Msa0377740

ATGTCGTCGTTCCCGTTCCACCGTCGATCTCAATCGGAGGTACATTTCCGAATCCCCGACGATTTCGACCTCGAAATGGATCCCTTCGACTTCGACGCTTCTCCGCTCCAGTTCCAAGATCCACCACCACCGCAACAACACGACGATCTCCTTTCCTCTTACATCGATTCCGATAATTCCGGATCCAAACTCAATTCTCCTACCGCCGCTAATGCCGGTCACCGCCGTAGCAATTCCGCCGATACATCTTCTTCCTTGTTGTCTGAAGGAATCGAATCTAAGAAAGCTATGTCTCCTGATAAACTTGCTCAATTGTGGACCGTTGATCCTAAACGCGCCAAGAGGATTCTGGCGAATCGTCAATCTGCGGCGAGGTCGAAAGAGAGGAAAGCTTGTTATGTGGTTGAGCTTGAAAGGAAAATTCATACTCTTCAAACTGAAGCAACTACTCTTTCTGCTCAATTAAATCTTTTCCAGAGAGATACAACTGGTCTGTCAAGTGAAAATACCGAGTTGAAGCTTCGGTTACAAACCATGGAGCAACAAGCTAAGCTATGTGATGCTCTAAATGAAGCATTGAAGAACGAAGTTGATAGGCTCAAGCTTGCTACTGGAGAGGTACCAACCCATGCTGATACCTATGGTTTGGGAATGCATCAATTTTCATATTCTCAAGCTTCATCCTTCATGCACCAGCCACAACATGGTCCAAACGATCTTAGGGCCATGCAAATGCAACATTTTCATTCCCTCTCATCTAATGGATCCAGTCCCCACCAGCCTCAGTTTGATCTACCCACTTCATATGATTTGTCGGAAATGTTGTCAAGTGATTCTATCGGCCAATTTCAGGGGCTGGACATTGGCAACAGGGTTTCTCATGTTCTGATGCCTGATGGTCCCTCCGTTTCTGTTAATAAAACCAACAACGCCTTTTGA
Protein sequence

>Msa0377740

MSSFPFHRRSQSEVHFRIPDDFDLEMDPFDFDASPLQFQDPPPPQQHDDLLSSYIDSDNSGSKLNSPTAANAGHRRSNSADTSSSLLSEGIESKKAMSPDKLAQLWTVDPKRAKRILANRQSAARSKERKACYVVELERKIHTLQTEATTLSAQLNLFQRDTTGLSSENTELKLRLQTMEQQAKLCDALNEALKNEVDRLKLATGEVPTHADTYGLGMHQFSYSQASSFMHQPQHGPNDLRAMQMQHFHSLSSNGSSPHQPQFDLPTSYDLSEMLSSDSIGQFQGLDIGNRVSHVLMPDGPSVSVNKTNNAF*