Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377790 | XP_013461496.1 | 71.975 | 157 | 5 | 2 | 1 | 119 | 1 | 156 | 2.58e-68 | 212 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377790 | sp|Q9FPR6|ARR17_ARATH | 55.385 | 130 | 22 | 1 | 19 | 112 | 21 | 150 | 1.91e-41 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377790 | A0A072V1G2 | 71.975 | 157 | 5 | 2 | 1 | 119 | 1 | 156 | 1.23e-68 | 212 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0377790 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377790 | MtrunA17_Chr3g0128691 | 71.975 | 157 | 5 | 2 | 1 | 119 | 1 | 156 | 2.37e-72 | 212 |
| Msa0377790 | MtrunA17_Chr3g0118211 | 48.837 | 129 | 31 | 1 | 19 | 112 | 24 | 152 | 1.30e-36 | 123 |
| Msa0377790 | MtrunA17_Chr4g0059571 | 48.837 | 129 | 31 | 1 | 19 | 112 | 27 | 155 | 6.78e-36 | 122 |
| Msa0377790 | MtrunA17_Chr3g0082861 | 44.526 | 137 | 32 | 1 | 19 | 111 | 5 | 141 | 1.08e-35 | 120 |
| Msa0377790 | MtrunA17_Chr5g0414931 | 47.328 | 131 | 30 | 1 | 19 | 110 | 17 | 147 | 5.05e-35 | 120 |
| Msa0377790 | MtrunA17_Chr1g0170741 | 47.407 | 135 | 33 | 1 | 14 | 110 | 4 | 138 | 1.19e-34 | 118 |
| Msa0377790 | MtrunA17_Chr8g0352871 | 44.853 | 136 | 32 | 1 | 19 | 111 | 10 | 145 | 2.11e-34 | 117 |
| Msa0377790 | MtrunA17_Chr7g0256551 | 45.455 | 132 | 28 | 1 | 19 | 106 | 10 | 141 | 7.06e-34 | 117 |
| Msa0377790 | MtrunA17_Chr3g0124861 | 41.135 | 141 | 29 | 2 | 19 | 106 | 23 | 162 | 3.23e-29 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377790 | AT3G56380.1 | 55.385 | 130 | 22 | 1 | 19 | 112 | 21 | 150 | 1.94e-42 | 137 |
| Msa0377790 | AT2G40670.1 | 54.545 | 132 | 22 | 1 | 19 | 112 | 30 | 161 | 2.02e-42 | 137 |
| Msa0377790 | AT3G56380.2 | 55.725 | 131 | 21 | 2 | 19 | 112 | 21 | 151 | 3.57e-41 | 134 |
| Msa0377790 | AT2G40670.2 | 54.887 | 133 | 21 | 2 | 19 | 112 | 30 | 162 | 4.68e-41 | 134 |
| Msa0377790 | AT1G59940.1 | 47.727 | 132 | 34 | 1 | 14 | 110 | 29 | 160 | 3.32e-36 | 123 |
| Msa0377790 | AT1G10470.3 | 49.606 | 127 | 29 | 1 | 19 | 110 | 21 | 147 | 3.59e-36 | 124 |
| Msa0377790 | AT1G10470.1 | 49.606 | 127 | 29 | 1 | 19 | 110 | 35 | 161 | 5.09e-36 | 124 |
| Msa0377790 | AT3G48100.1 | 48.062 | 129 | 31 | 1 | 19 | 111 | 26 | 154 | 1.53e-35 | 120 |
| Msa0377790 | AT5G62920.1 | 48.872 | 133 | 33 | 1 | 19 | 116 | 26 | 158 | 1.53e-35 | 120 |
| Msa0377790 | AT1G59940.2 | 47.727 | 132 | 34 | 1 | 14 | 110 | 121 | 252 | 3.41e-35 | 123 |
| Msa0377790 | AT2G41310.1 | 40.278 | 144 | 43 | 1 | 11 | 111 | 2 | 145 | 2.50e-33 | 116 |
| Msa0377790 | AT1G74890.1 | 44.853 | 136 | 40 | 1 | 19 | 119 | 19 | 154 | 4.20e-33 | 115 |
| Msa0377790 | AT3G57040.2 | 40.580 | 138 | 37 | 1 | 19 | 111 | 10 | 147 | 4.85e-33 | 115 |
| Msa0377790 | AT3G57040.1 | 40.580 | 138 | 37 | 1 | 19 | 111 | 10 | 147 | 4.85e-33 | 115 |
| Msa0377790 | AT1G19050.1 | 44.961 | 129 | 36 | 1 | 19 | 112 | 25 | 153 | 1.48e-31 | 111 |
| Msa0377790 | AT1G10470.2 | 45.882 | 85 | 42 | 3 | 28 | 110 | 3 | 85 | 3.36e-15 | 68.2 |
| Msa0377790 | AT2G07440.1 | 47.059 | 51 | 27 | 0 | 61 | 111 | 9 | 59 | 7.43e-11 | 55.8 |
Find 34 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAGGCCAGCTGATGAATT+TGG | 0.201243 | 3_1:+78468591 | Msa0377790:CDS |
| CTCCTAAGCATATCTTATTA+AGG | 0.319448 | 3_1:-78468670 | None:intergenic |
| AATTACTTGTTGATCCTTGT+TGG | 0.359191 | 3_1:-78468415 | None:intergenic |
| TCAAAGTGGGTGATGGAAAA+TGG | 0.361841 | 3_1:+78467676 | Msa0377790:CDS |
| AGGATGTTGTACTCTAGTTT+AGG | 0.370041 | 3_1:+78468716 | Msa0377790:three_prime_UTR |
| TGAGTTGCTTAAGAAAATTA+AGG | 0.374516 | 3_1:+78468227 | Msa0377790:CDS |
| ACAGGCCAGCTGATGAATTT+GGG | 0.393986 | 3_1:+78468592 | Msa0377790:CDS |
| TACTGCATGCCAGGGATGAC+TGG | 0.411671 | 3_1:+78468201 | Msa0377790:CDS |
| ATCACAGACTACTGCATGCC+AGG | 0.428078 | 3_1:+78468192 | Msa0377790:intron |
| TTCTTCTTCAAAGTGGGTGA+TGG | 0.456607 | 3_1:+78467669 | Msa0377790:CDS |
| CTGATTCTTCTTCTTCAAAG+TGG | 0.467692 | 3_1:+78467662 | Msa0377790:CDS |
| TGATTCTTCTTCTTCAAAGT+GGG | 0.471982 | 3_1:+78467663 | Msa0377790:CDS |
| ACCTTCCCAAATTCATCAGC+TGG | 0.476038 | 3_1:-78468597 | None:intergenic |
| TCAGATGACATGATCACAAC+AGG | 0.480037 | 3_1:-78468385 | None:intergenic |
| TCAGCAATCATCTGTGATGA+AGG | 0.481432 | 3_1:+78468357 | Msa0377790:intron |
| GGCCTTAATAAGATATGCTT+AGG | 0.492435 | 3_1:+78468668 | Msa0377790:three_prime_UTR |
| GCATATCTTATTAAGGCCTA+AGG | 0.498738 | 3_1:-78468663 | None:intergenic |
| TTTACATCAGATTGTTTGAG+AGG | 0.513388 | 3_1:-78468562 | None:intergenic |
| AACTCATAGCCAGTCATCCC+TGG | 0.516855 | 3_1:-78468210 | None:intergenic |
| AAAAGCAGGTGTATGGAAGA+AGG | 0.535716 | 3_1:+78468517 | Msa0377790:intron |
| AAAGCAGGTGTATGGAAGAA+GGG | 0.542181 | 3_1:+78468518 | Msa0377790:intron |
| CATATCTTATTAAGGCCTAA+GGG | 0.549802 | 3_1:-78468662 | None:intergenic |
| CAATGCAAGATATCACCCTT+AGG | 0.568702 | 3_1:+78468647 | Msa0377790:three_prime_UTR |
| AATAAGATATGCTTAGGAGT+AGG | 0.581556 | 3_1:+78468674 | Msa0377790:three_prime_UTR |
| CTCAAGAATTCCTCTTGCAA+AGG | 0.589496 | 3_1:+78467763 | Msa0377790:CDS |
| GCCAGCTGATGAATTTGGGA+AGG | 0.598518 | 3_1:+78468596 | Msa0377790:CDS |
| AAGCAGGTGTATGGAAGAAG+GGG | 0.612241 | 3_1:+78468519 | Msa0377790:intron |
| TCACAGACTACTGCATGCCA+GGG | 0.612620 | 3_1:+78468193 | Msa0377790:intron |
| CTTTGCAAGAGGAATTCTTG+AGG | 0.621330 | 3_1:-78467762 | None:intergenic |
| TCTGATGTAAAACAACTGAC+AGG | 0.621647 | 3_1:+78468574 | Msa0377790:CDS |
| TCATCAACAGCAAGAACATG+AGG | 0.625979 | 3_1:-78467706 | None:intergenic |
| GGTGTACGTACCTTTGCAAG+AGG | 0.636893 | 3_1:-78467773 | None:intergenic |
| GCAATCATCTGTGATGAAGG+AGG | 0.667691 | 3_1:+78468360 | Msa0377790:intron |
| CATCTGAGAATATACCAACA+AGG | 0.683899 | 3_1:+78468401 | Msa0377790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAATATAACAGAAAA+TGG | - | chr3_1:78467813-78467832 | None:intergenic | 10.0% |
| !! | AAAAATAATATAACAGAAAA+TGG | - | chr3_1:78467813-78467832 | None:intergenic | 10.0% |
| !! | AGAAAAAGATACAAAAAAAA+TGG | - | chr3_1:78468464-78468483 | None:intergenic | 15.0% |
| !! | AGAAAAAGATACAAAAAAAA+TGG | - | chr3_1:78468464-78468483 | None:intergenic | 15.0% |
| !!! | GATGTTTGATGTTTTTTTTT+TGG | + | chr3_1:78467872-78467891 | Msa0377790:intron | 20.0% |
| !!! | TTTTTTTTTGGTCCATATTT+TGG | + | chr3_1:78467884-78467903 | Msa0377790:intron | 20.0% |
| !! | TGAAAATAATATCCAATTTG+GGG | - | chr3_1:78468340-78468359 | None:intergenic | 20.0% |
| !! | CTGAAAATAATATCCAATTT+GGG | - | chr3_1:78468341-78468360 | None:intergenic | 20.0% |
| !!! | GATGTTTGATGTTTTTTTTT+TGG | + | chr3_1:78467872-78467891 | Msa0377790:intron | 20.0% |
| !!! | TTTTTTTTTGGTCCATATTT+TGG | + | chr3_1:78467884-78467903 | Msa0377790:intron | 20.0% |
| !! | TGAAAATAATATCCAATTTG+GGG | - | chr3_1:78468340-78468359 | None:intergenic | 20.0% |
| !! | CTGAAAATAATATCCAATTT+GGG | - | chr3_1:78468341-78468360 | None:intergenic | 20.0% |
| !!! | GTGTTTTGTTAGTAACATTT+TGG | - | chr3_1:78468065-78468084 | None:intergenic | 25.0% |
| ! | TGAGTTGCTTAAGAAAATTA+AGG | + | chr3_1:78468227-78468246 | Msa0377790:CDS | 25.0% |
| ! | GCTGAAAATAATATCCAATT+TGG | - | chr3_1:78468342-78468361 | None:intergenic | 25.0% |
| !!! | GTGTTTTGTTAGTAACATTT+TGG | - | chr3_1:78468065-78468084 | None:intergenic | 25.0% |
| ! | TGAGTTGCTTAAGAAAATTA+AGG | + | chr3_1:78468227-78468246 | Msa0377790:CDS | 25.0% |
| ! | GCTGAAAATAATATCCAATT+TGG | - | chr3_1:78468342-78468361 | None:intergenic | 25.0% |
| TGATTCTTCTTCTTCAAAGT+GGG | + | chr3_1:78467663-78467682 | Msa0377790:CDS | 30.0% | |
| CAAACAGAATCACCAAAATA+TGG | - | chr3_1:78467899-78467918 | None:intergenic | 30.0% | |
| GTGATTCTGTTTGATTGAAT+GGG | + | chr3_1:78467906-78467925 | Msa0377790:intron | 30.0% | |
| !!! | TGACTATTTCTGGTTTTTGT+AGG | + | chr3_1:78468149-78468168 | Msa0377790:intron | 30.0% |
| !!! | GACTATTTCTGGTTTTTGTA+GGG | + | chr3_1:78468150-78468169 | Msa0377790:intron | 30.0% |
| AAATAATATCCAATTTGGGG+TGG | - | chr3_1:78468337-78468356 | None:intergenic | 30.0% | |
| ! | AATTACTTGTTGATCCTTGT+TGG | - | chr3_1:78468418-78468437 | None:intergenic | 30.0% |
| TTTACATCAGATTGTTTGAG+AGG | - | chr3_1:78468565-78468584 | None:intergenic | 30.0% | |
| CATATCTTATTAAGGCCTAA+GGG | - | chr3_1:78468665-78468684 | None:intergenic | 30.0% | |
| CTCCTAAGCATATCTTATTA+AGG | - | chr3_1:78468673-78468692 | None:intergenic | 30.0% | |
| AATAAGATATGCTTAGGAGT+AGG | + | chr3_1:78468674-78468693 | Msa0377790:three_prime_UTR | 30.0% | |
| !! | GAATGCATATCATTGTTTTG+AGG | + | chr3_1:78468696-78468715 | Msa0377790:three_prime_UTR | 30.0% |
| TGATTCTTCTTCTTCAAAGT+GGG | + | chr3_1:78467663-78467682 | Msa0377790:CDS | 30.0% | |
| CAAACAGAATCACCAAAATA+TGG | - | chr3_1:78467899-78467918 | None:intergenic | 30.0% | |
| GTGATTCTGTTTGATTGAAT+GGG | + | chr3_1:78467906-78467925 | Msa0377790:intron | 30.0% | |
| !!! | TGACTATTTCTGGTTTTTGT+AGG | + | chr3_1:78468149-78468168 | Msa0377790:intron | 30.0% |
| !!! | GACTATTTCTGGTTTTTGTA+GGG | + | chr3_1:78468150-78468169 | Msa0377790:intron | 30.0% |
| AAATAATATCCAATTTGGGG+TGG | - | chr3_1:78468337-78468356 | None:intergenic | 30.0% | |
| ! | AATTACTTGTTGATCCTTGT+TGG | - | chr3_1:78468418-78468437 | None:intergenic | 30.0% |
| TTTACATCAGATTGTTTGAG+AGG | - | chr3_1:78468565-78468584 | None:intergenic | 30.0% | |
| CATATCTTATTAAGGCCTAA+GGG | - | chr3_1:78468665-78468684 | None:intergenic | 30.0% | |
| CTCCTAAGCATATCTTATTA+AGG | - | chr3_1:78468673-78468692 | None:intergenic | 30.0% | |
| AATAAGATATGCTTAGGAGT+AGG | + | chr3_1:78468674-78468693 | Msa0377790:three_prime_UTR | 30.0% | |
| !! | GAATGCATATCATTGTTTTG+AGG | + | chr3_1:78468696-78468715 | Msa0377790:three_prime_UTR | 30.0% |
| CTGATTCTTCTTCTTCAAAG+TGG | + | chr3_1:78467662-78467681 | Msa0377790:CDS | 35.0% | |
| AAAATGGTTGAGTGAGAGAT+AGG | - | chr3_1:78467797-78467816 | None:intergenic | 35.0% | |
| GGTGATTCTGTTTGATTGAA+TGG | + | chr3_1:78467905-78467924 | Msa0377790:intron | 35.0% | |
| !! | TGATTGAATGGGCTTTTTGT+TGG | + | chr3_1:78467917-78467936 | Msa0377790:intron | 35.0% |
| TGCTAACAAGTGACTATTTC+TGG | + | chr3_1:78468139-78468158 | Msa0377790:intron | 35.0% | |
| GTGATGACCAAATTCACTTT+GGG | - | chr3_1:78468177-78468196 | None:intergenic | 35.0% | |
| TGTGATGACCAAATTCACTT+TGG | - | chr3_1:78468178-78468197 | None:intergenic | 35.0% | |
| CATCTGAGAATATACCAACA+AGG | + | chr3_1:78468401-78468420 | Msa0377790:CDS | 35.0% | |
| TCTGATGTAAAACAACTGAC+AGG | + | chr3_1:78468574-78468593 | Msa0377790:CDS | 35.0% | |
| GCATATCTTATTAAGGCCTA+AGG | - | chr3_1:78468666-78468685 | None:intergenic | 35.0% | |
| GGCCTTAATAAGATATGCTT+AGG | + | chr3_1:78468668-78468687 | Msa0377790:three_prime_UTR | 35.0% | |
| CTGATTCTTCTTCTTCAAAG+TGG | + | chr3_1:78467662-78467681 | Msa0377790:CDS | 35.0% | |
| AAAATGGTTGAGTGAGAGAT+AGG | - | chr3_1:78467797-78467816 | None:intergenic | 35.0% | |
| GGTGATTCTGTTTGATTGAA+TGG | + | chr3_1:78467905-78467924 | Msa0377790:intron | 35.0% | |
| !! | TGATTGAATGGGCTTTTTGT+TGG | + | chr3_1:78467917-78467936 | Msa0377790:intron | 35.0% |
| TGCTAACAAGTGACTATTTC+TGG | + | chr3_1:78468139-78468158 | Msa0377790:intron | 35.0% | |
| GTGATGACCAAATTCACTTT+GGG | - | chr3_1:78468177-78468196 | None:intergenic | 35.0% | |
| TGTGATGACCAAATTCACTT+TGG | - | chr3_1:78468178-78468197 | None:intergenic | 35.0% | |
| CATCTGAGAATATACCAACA+AGG | + | chr3_1:78468401-78468420 | Msa0377790:CDS | 35.0% | |
| TCTGATGTAAAACAACTGAC+AGG | + | chr3_1:78468574-78468593 | Msa0377790:CDS | 35.0% | |
| GCATATCTTATTAAGGCCTA+AGG | - | chr3_1:78468666-78468685 | None:intergenic | 35.0% | |
| GGCCTTAATAAGATATGCTT+AGG | + | chr3_1:78468668-78468687 | Msa0377790:three_prime_UTR | 35.0% | |
| TTCTTCTTCAAAGTGGGTGA+TGG | + | chr3_1:78467669-78467688 | Msa0377790:CDS | 40.0% | |
| !! | TCAAAGTGGGTGATGGAAAA+TGG | + | chr3_1:78467676-78467695 | Msa0377790:CDS | 40.0% |
| TCATCAACAGCAAGAACATG+AGG | - | chr3_1:78467709-78467728 | None:intergenic | 40.0% | |
| CTTTGCAAGAGGAATTCTTG+AGG | - | chr3_1:78467765-78467784 | None:intergenic | 40.0% | |
| CTCAAGAATTCCTCTTGCAA+AGG | + | chr3_1:78467763-78467782 | Msa0377790:CDS | 40.0% | |
| ACAGTGACAACTGCTGAAAA+TGG | + | chr3_1:78467947-78467966 | Msa0377790:intron | 40.0% | |
| CAGTGACAACTGCTGAAAAT+GGG | + | chr3_1:78467948-78467967 | Msa0377790:intron | 40.0% | |
| !! | CTGAAGGCATTGGAGTATTT+GGG | + | chr3_1:78467971-78467990 | Msa0377790:intron | 40.0% |
| AAGTGGTGAACAGAACACTT+TGG | + | chr3_1:78468000-78468019 | Msa0377790:intron | 40.0% | |
| ! | GAACAGAACACTTTGGAGAA+TGG | + | chr3_1:78468007-78468026 | Msa0377790:intron | 40.0% |
| TAACACTAACCACCCCAAAT+TGG | + | chr3_1:78468325-78468344 | Msa0377790:intron | 40.0% | |
| TCAGCAATCATCTGTGATGA+AGG | + | chr3_1:78468357-78468376 | Msa0377790:intron | 40.0% | |
| TCAGATGACATGATCACAAC+AGG | - | chr3_1:78468388-78468407 | None:intergenic | 40.0% | |
| CAGCACAACAATGATTGAGT+AGG | - | chr3_1:78468496-78468515 | None:intergenic | 40.0% | |
| CATTGTTGTGCTGAAAAAGC+AGG | + | chr3_1:78468503-78468522 | Msa0377790:intron | 40.0% | |
| AAAAGCAGGTGTATGGAAGA+AGG | + | chr3_1:78468517-78468536 | Msa0377790:intron | 40.0% | |
| AAAGCAGGTGTATGGAAGAA+GGG | + | chr3_1:78468518-78468537 | Msa0377790:intron | 40.0% | |
| CAATGCAAGATATCACCCTT+AGG | + | chr3_1:78468647-78468666 | Msa0377790:three_prime_UTR | 40.0% | |
| TTCTTCTTCAAAGTGGGTGA+TGG | + | chr3_1:78467669-78467688 | Msa0377790:CDS | 40.0% | |
| !! | TCAAAGTGGGTGATGGAAAA+TGG | + | chr3_1:78467676-78467695 | Msa0377790:CDS | 40.0% |
| TCATCAACAGCAAGAACATG+AGG | - | chr3_1:78467709-78467728 | None:intergenic | 40.0% | |
| CTTTGCAAGAGGAATTCTTG+AGG | - | chr3_1:78467765-78467784 | None:intergenic | 40.0% | |
| CTCAAGAATTCCTCTTGCAA+AGG | + | chr3_1:78467763-78467782 | Msa0377790:CDS | 40.0% | |
| ACAGTGACAACTGCTGAAAA+TGG | + | chr3_1:78467947-78467966 | Msa0377790:intron | 40.0% | |
| CAGTGACAACTGCTGAAAAT+GGG | + | chr3_1:78467948-78467967 | Msa0377790:intron | 40.0% | |
| !! | CTGAAGGCATTGGAGTATTT+GGG | + | chr3_1:78467971-78467990 | Msa0377790:intron | 40.0% |
| AAGTGGTGAACAGAACACTT+TGG | + | chr3_1:78468000-78468019 | Msa0377790:intron | 40.0% | |
| ! | GAACAGAACACTTTGGAGAA+TGG | + | chr3_1:78468007-78468026 | Msa0377790:intron | 40.0% |
| TAACACTAACCACCCCAAAT+TGG | + | chr3_1:78468325-78468344 | Msa0377790:intron | 40.0% | |
| TCAGCAATCATCTGTGATGA+AGG | + | chr3_1:78468357-78468376 | Msa0377790:intron | 40.0% | |
| TCAGATGACATGATCACAAC+AGG | - | chr3_1:78468388-78468407 | None:intergenic | 40.0% | |
| CAGCACAACAATGATTGAGT+AGG | - | chr3_1:78468496-78468515 | None:intergenic | 40.0% | |
| CATTGTTGTGCTGAAAAAGC+AGG | + | chr3_1:78468503-78468522 | Msa0377790:intron | 40.0% | |
| AAAAGCAGGTGTATGGAAGA+AGG | + | chr3_1:78468517-78468536 | Msa0377790:intron | 40.0% | |
| AAAGCAGGTGTATGGAAGAA+GGG | + | chr3_1:78468518-78468537 | Msa0377790:intron | 40.0% | |
| CAATGCAAGATATCACCCTT+AGG | + | chr3_1:78468647-78468666 | Msa0377790:three_prime_UTR | 40.0% | |
| !! | AACTGCTGAAAATGGGCTGA+AGG | + | chr3_1:78467955-78467974 | Msa0377790:intron | 45.0% |
| !! | TGAAAATGGGCTGAAGGCAT+TGG | + | chr3_1:78467961-78467980 | Msa0377790:intron | 45.0% |
| !! | GCTGAAGGCATTGGAGTATT+TGG | + | chr3_1:78467970-78467989 | Msa0377790:intron | 45.0% |
| GAGTATTTGGGCTTGTCAAG+TGG | + | chr3_1:78467983-78468002 | Msa0377790:intron | 45.0% | |
| GTAGGGACCCAAAGTGAATT+TGG | + | chr3_1:78468167-78468186 | Msa0377790:intron | 45.0% | |
| GCAATCATCTGTGATGAAGG+AGG | + | chr3_1:78468360-78468379 | Msa0377790:intron | 45.0% | |
| GTGCTGAAAAAGCAGGTGTA+TGG | + | chr3_1:78468510-78468529 | Msa0377790:intron | 45.0% | |
| AAGCAGGTGTATGGAAGAAG+GGG | + | chr3_1:78468519-78468538 | Msa0377790:intron | 45.0% | |
| ACAGGCCAGCTGATGAATTT+GGG | + | chr3_1:78468592-78468611 | Msa0377790:CDS | 45.0% | |
| ACCTTCCCAAATTCATCAGC+TGG | - | chr3_1:78468600-78468619 | None:intergenic | 45.0% | |
| !! | AACTGCTGAAAATGGGCTGA+AGG | + | chr3_1:78467955-78467974 | Msa0377790:intron | 45.0% |
| !! | TGAAAATGGGCTGAAGGCAT+TGG | + | chr3_1:78467961-78467980 | Msa0377790:intron | 45.0% |
| !! | GCTGAAGGCATTGGAGTATT+TGG | + | chr3_1:78467970-78467989 | Msa0377790:intron | 45.0% |
| GAGTATTTGGGCTTGTCAAG+TGG | + | chr3_1:78467983-78468002 | Msa0377790:intron | 45.0% | |
| GTAGGGACCCAAAGTGAATT+TGG | + | chr3_1:78468167-78468186 | Msa0377790:intron | 45.0% | |
| GCAATCATCTGTGATGAAGG+AGG | + | chr3_1:78468360-78468379 | Msa0377790:intron | 45.0% | |
| GTGCTGAAAAAGCAGGTGTA+TGG | + | chr3_1:78468510-78468529 | Msa0377790:intron | 45.0% | |
| AAGCAGGTGTATGGAAGAAG+GGG | + | chr3_1:78468519-78468538 | Msa0377790:intron | 45.0% | |
| ACAGGCCAGCTGATGAATTT+GGG | + | chr3_1:78468592-78468611 | Msa0377790:CDS | 45.0% | |
| ACCTTCCCAAATTCATCAGC+TGG | - | chr3_1:78468600-78468619 | None:intergenic | 45.0% | |
| GGTGTACGTACCTTTGCAAG+AGG | - | chr3_1:78467776-78467795 | None:intergenic | 50.0% | |
| ATCACAGACTACTGCATGCC+AGG | + | chr3_1:78468192-78468211 | Msa0377790:intron | 50.0% | |
| TCACAGACTACTGCATGCCA+GGG | + | chr3_1:78468193-78468212 | Msa0377790:intron | 50.0% | |
| AACTCATAGCCAGTCATCCC+TGG | - | chr3_1:78468213-78468232 | None:intergenic | 50.0% | |
| GACAGGCCAGCTGATGAATT+TGG | + | chr3_1:78468591-78468610 | Msa0377790:CDS | 50.0% | |
| GCCAGCTGATGAATTTGGGA+AGG | + | chr3_1:78468596-78468615 | Msa0377790:CDS | 50.0% | |
| GGTGTACGTACCTTTGCAAG+AGG | - | chr3_1:78467776-78467795 | None:intergenic | 50.0% | |
| ATCACAGACTACTGCATGCC+AGG | + | chr3_1:78468192-78468211 | Msa0377790:intron | 50.0% | |
| TCACAGACTACTGCATGCCA+GGG | + | chr3_1:78468193-78468212 | Msa0377790:intron | 50.0% | |
| AACTCATAGCCAGTCATCCC+TGG | - | chr3_1:78468213-78468232 | None:intergenic | 50.0% | |
| GACAGGCCAGCTGATGAATT+TGG | + | chr3_1:78468591-78468610 | Msa0377790:CDS | 50.0% | |
| GCCAGCTGATGAATTTGGGA+AGG | + | chr3_1:78468596-78468615 | Msa0377790:CDS | 50.0% | |
| TACTGCATGCCAGGGATGAC+TGG | + | chr3_1:78468201-78468220 | Msa0377790:CDS | 55.0% | |
| TACTGCATGCCAGGGATGAC+TGG | + | chr3_1:78468201-78468220 | Msa0377790:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 78467655 | 78468737 | 78467655 | ID=Msa0377790;Name=Msa0377790 |
| chr3_1 | mRNA | 78467655 | 78468737 | 78467655 | ID=Msa0377790-mRNA-1;Parent=Msa0377790;Name=Msa0377790-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.66|0.5|1|1|1|4|104|119 |
| chr3_1 | exon | 78467655 | 78467784 | 78467655 | ID=Msa0377790-mRNA-1:exon:18879;Parent=Msa0377790-mRNA-1 |
| chr3_1 | exon | 78468199 | 78468248 | 78468199 | ID=Msa0377790-mRNA-1:exon:18880;Parent=Msa0377790-mRNA-1 |
| chr3_1 | exon | 78468361 | 78468431 | 78468361 | ID=Msa0377790-mRNA-1:exon:18881;Parent=Msa0377790-mRNA-1 |
| chr3_1 | exon | 78468525 | 78468737 | 78468525 | ID=Msa0377790-mRNA-1:exon:18882;Parent=Msa0377790-mRNA-1 |
| chr3_1 | CDS | 78467655 | 78467784 | 78467655 | ID=Msa0377790-mRNA-1:cds;Parent=Msa0377790-mRNA-1 |
| chr3_1 | CDS | 78468199 | 78468248 | 78468199 | ID=Msa0377790-mRNA-1:cds;Parent=Msa0377790-mRNA-1 |
| chr3_1 | CDS | 78468361 | 78468431 | 78468361 | ID=Msa0377790-mRNA-1:cds;Parent=Msa0377790-mRNA-1 |
| chr3_1 | CDS | 78468525 | 78468633 | 78468525 | ID=Msa0377790-mRNA-1:cds;Parent=Msa0377790-mRNA-1 |
| chr3_1 | three_prime_UTR | 78468634 | 78468737 | 78468634 | ID=Msa0377790-mRNA-1:three_prime_utr;Parent=Msa0377790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
