AlfalfaGEDB | Msa0377790

M. sativa cultivar zhongmu-4 / Msa0377790

KEGG: K14492
GO: GO:0000156 GO:0000160 GO:0003674 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00072.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0377790	XP_013461496.1	71.975	157	5	2	1	119	1	156	2.58e-68	212

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0377790	sp\|Q9FPR6\|ARR17_ARATH	55.385	130	22	1	19	112	21	150	1.91e-41	137

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0377790	A0A072V1G2	71.975	157	5	2	1	119	1	156	1.23e-68	212

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TFs/TRs:

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Gene ID	Type	Classification
Msa0377790	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0377790	MtrunA17_Chr3g0128691	71.975	157	5	2	1	119	1	156	2.37e-72	212
Msa0377790	MtrunA17_Chr3g0118211	48.837	129	31	1	19	112	24	152	1.30e-36	123
Msa0377790	MtrunA17_Chr4g0059571	48.837	129	31	1	19	112	27	155	6.78e-36	122
Msa0377790	MtrunA17_Chr3g0082861	44.526	137	32	1	19	111	5	141	1.08e-35	120
Msa0377790	MtrunA17_Chr5g0414931	47.328	131	30	1	19	110	17	147	5.05e-35	120
Msa0377790	MtrunA17_Chr1g0170741	47.407	135	33	1	14	110	4	138	1.19e-34	118
Msa0377790	MtrunA17_Chr8g0352871	44.853	136	32	1	19	111	10	145	2.11e-34	117
Msa0377790	MtrunA17_Chr7g0256551	45.455	132	28	1	19	106	10	141	7.06e-34	117
Msa0377790	MtrunA17_Chr3g0124861	41.135	141	29	2	19	106	23	162	3.23e-29	105

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0377790	AT3G56380.1	55.385	130	22	1	19	112	21	150	1.94e-42	137
Msa0377790	AT2G40670.1	54.545	132	22	1	19	112	30	161	2.02e-42	137
Msa0377790	AT3G56380.2	55.725	131	21	2	19	112	21	151	3.57e-41	134
Msa0377790	AT2G40670.2	54.887	133	21	2	19	112	30	162	4.68e-41	134
Msa0377790	AT1G59940.1	47.727	132	34	1	14	110	29	160	3.32e-36	123
Msa0377790	AT1G10470.3	49.606	127	29	1	19	110	21	147	3.59e-36	124
Msa0377790	AT1G10470.1	49.606	127	29	1	19	110	35	161	5.09e-36	124
Msa0377790	AT3G48100.1	48.062	129	31	1	19	111	26	154	1.53e-35	120
Msa0377790	AT5G62920.1	48.872	133	33	1	19	116	26	158	1.53e-35	120
Msa0377790	AT1G59940.2	47.727	132	34	1	14	110	121	252	3.41e-35	123

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Find 34 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAGGTGTATGGAAGA+AGG	0.535716	3_1:+78468517	Msa0377790:intron
AAAGCAGGTGTATGGAAGAA+GGG	0.542181	3_1:+78468518	Msa0377790:intron
AACTCATAGCCAGTCATCCC+TGG	0.516855	3_1:-78468210	None:intergenic
AAGCAGGTGTATGGAAGAAG+GGG	0.612241	3_1:+78468519	Msa0377790:intron
AATAAGATATGCTTAGGAGT+AGG	0.581556	3_1:+78468674	Msa0377790:three_prime_UTR
AATTACTTGTTGATCCTTGT+TGG	0.359191	3_1:-78468415	None:intergenic
ACAGGCCAGCTGATGAATTT+GGG	0.393986	3_1:+78468592	Msa0377790:CDS
ACCTTCCCAAATTCATCAGC+TGG	0.476038	3_1:-78468597	None:intergenic
AGGATGTTGTACTCTAGTTT+AGG	0.370041	3_1:+78468716	Msa0377790:three_prime_UTR
ATCACAGACTACTGCATGCC+AGG	0.428078	3_1:+78468192	Msa0377790:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGATTCTTCTTCTTCAAAGT+GGG	+	chr3_1:78467663-78467682	Msa0377790:CDS	30.0%
CAAACAGAATCACCAAAATA+TGG	-	chr3_1:78467899-78467918	None:intergenic	30.0%
GTGATTCTGTTTGATTGAAT+GGG	+	chr3_1:78467906-78467925	Msa0377790:intron	30.0%
AAATAATATCCAATTTGGGG+TGG	-	chr3_1:78468337-78468356	None:intergenic	30.0%
TTTACATCAGATTGTTTGAG+AGG	-	chr3_1:78468565-78468584	None:intergenic	30.0%
CATATCTTATTAAGGCCTAA+GGG	-	chr3_1:78468665-78468684	None:intergenic	30.0%
CTCCTAAGCATATCTTATTA+AGG	-	chr3_1:78468673-78468692	None:intergenic	30.0%
AATAAGATATGCTTAGGAGT+AGG	+	chr3_1:78468674-78468693	Msa0377790:three_prime_UTR	30.0%
TGATTCTTCTTCTTCAAAGT+GGG	+	chr3_1:78467663-78467682	Msa0377790:CDS	30.0%
CAAACAGAATCACCAAAATA+TGG	-	chr3_1:78467899-78467918	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	78467655	78468737	78467655	ID=Msa0377790;Name=Msa0377790
chr3_1	mRNA	78467655	78468737	78467655	ID=Msa0377790-mRNA-1;Parent=Msa0377790;Name=Msa0377790-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0\|0.66\|0.5\|1\|1\|1\|4\|104\|119
chr3_1	exon	78467655	78467784	78467655	ID=Msa0377790-mRNA-1:exon:18879;Parent=Msa0377790-mRNA-1
chr3_1	exon	78468199	78468248	78468199	ID=Msa0377790-mRNA-1:exon:18880;Parent=Msa0377790-mRNA-1
chr3_1	exon	78468361	78468431	78468361	ID=Msa0377790-mRNA-1:exon:18881;Parent=Msa0377790-mRNA-1
chr3_1	exon	78468525	78468737	78468525	ID=Msa0377790-mRNA-1:exon:18882;Parent=Msa0377790-mRNA-1
chr3_1	CDS	78467655	78467784	78467655	ID=Msa0377790-mRNA-1:cds;Parent=Msa0377790-mRNA-1
chr3_1	CDS	78468199	78468248	78468199	ID=Msa0377790-mRNA-1:cds;Parent=Msa0377790-mRNA-1
chr3_1	CDS	78468361	78468431	78468361	ID=Msa0377790-mRNA-1:cds;Parent=Msa0377790-mRNA-1
chr3_1	CDS	78468525	78468633	78468525	ID=Msa0377790-mRNA-1:cds;Parent=Msa0377790-mRNA-1
chr3_1	three_prime_UTR	78468634	78468737	78468634	ID=Msa0377790-mRNA-1:three_prime_utr;Parent=Msa0377790-mRNA-1

Gene Sequence	>Msa0377790 ATGGCTTCTGATTCTTCTTCTTCAAAGTGGGTGATGGAAAATGGTGACATTCCTCATGTTCTTGCTGTTGATGACAATATCATTGATCGCACACTTGTTGAGAAACTCCTCAAGAATTCCTCTTGCAAAGACTACTGCATGCCAGGGATGACTGGCTATGAGTTGCTTAAGAAAATTAAGCAATCATCTGTGATGAAGGAGGTTCCTGTTGTGATCATGTCATCTGAGAATATACCAACAAGGATCAACAAGTGTATGGAAGAAGGGGCTCAGATGTTCATACAAAAGCCTCTCAAACAATCTGATGTAAAACAACTGACAGGCCAGCTGATGAATTTGGGAAGGTTGCAAAAGAATTGA
Protein sequence	>Msa0377790 MASDSSSSKWVMENGDIPHVLAVDDNIIDRTLVEKLLKNSSCKDYCMPGMTGYELLKKIKQSSVMKEVPVVIMSSENIPTRINKCMEEGAQMFIQKPLKQSDVKQLTGQLMNLGRLQKN*