Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378860 | RHN70095.1 | 88.957 | 326 | 22 | 2 | 1 | 312 | 7 | 332 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378860 | sp|Q8L3W1|VRN1_ARATH | 27.826 | 345 | 168 | 10 | 10 | 283 | 2 | 336 | 4.41e-29 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378860 | A0A396J148 | 88.957 | 326 | 22 | 2 | 1 | 312 | 7 | 332 | 0.0 | 593 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0378860 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378860 | MtrunA17_Chr3g0131891 | 88.957 | 326 | 22 | 2 | 1 | 312 | 7 | 332 | 0.0 | 593 |
| Msa0378860 | MtrunA17_Chr7g0233561 | 63.889 | 324 | 93 | 4 | 1 | 300 | 6 | 329 | 4.69e-144 | 409 |
| Msa0378860 | MtrunA17_Chr7g0233531 | 67.616 | 281 | 82 | 3 | 28 | 300 | 1 | 280 | 5.81e-128 | 366 |
| Msa0378860 | MtrunA17_Chr7g0233541 | 63.973 | 297 | 83 | 6 | 28 | 300 | 1 | 297 | 3.57e-124 | 357 |
| Msa0378860 | MtrunA17_Chr7g0233521 | 59.322 | 295 | 83 | 6 | 28 | 300 | 1 | 280 | 4.12e-111 | 323 |
| Msa0378860 | MtrunA17_Chr7g0233571 | 59.361 | 219 | 61 | 6 | 1 | 194 | 1 | 216 | 3.57e-77 | 235 |
| Msa0378860 | MtrunA17_Chr8g0390841 | 33.333 | 327 | 168 | 11 | 11 | 301 | 37 | 349 | 7.44e-44 | 157 |
| Msa0378860 | MtrunA17_Chr1g0163071 | 33.663 | 303 | 138 | 9 | 28 | 283 | 1 | 287 | 6.74e-41 | 144 |
| Msa0378860 | MtrunA17_Chr1g0208771 | 30.476 | 315 | 159 | 11 | 29 | 301 | 13 | 309 | 8.39e-39 | 142 |
| Msa0378860 | MtrunA17_Chr3g0103181 | 31.164 | 292 | 161 | 10 | 10 | 282 | 9 | 279 | 2.44e-34 | 126 |
| Msa0378860 | MtrunA17_Chr1g0171611 | 31.429 | 280 | 164 | 9 | 10 | 281 | 6 | 265 | 5.67e-29 | 112 |
| Msa0378860 | MtrunA17_Chr1g0163231 | 27.972 | 286 | 178 | 8 | 10 | 281 | 6 | 277 | 1.52e-27 | 108 |
| Msa0378860 | MtrunA17_Chr1g0163181 | 30.175 | 285 | 167 | 9 | 22 | 281 | 14 | 291 | 4.35e-26 | 107 |
| Msa0378860 | MtrunA17_Chr4g0067431 | 29.260 | 311 | 169 | 12 | 11 | 282 | 13 | 311 | 4.42e-25 | 102 |
| Msa0378860 | MtrunA17_Chr1g0154161 | 30.000 | 300 | 178 | 10 | 11 | 291 | 28 | 314 | 4.68e-25 | 102 |
| Msa0378860 | MtrunA17_Chr1g0163261 | 28.754 | 313 | 193 | 10 | 10 | 307 | 6 | 303 | 6.73e-25 | 101 |
| Msa0378860 | MtrunA17_Chr1g0163221 | 27.682 | 289 | 185 | 8 | 11 | 282 | 9 | 290 | 9.45e-24 | 99.8 |
| Msa0378860 | MtrunA17_Chr3g0077451 | 25.670 | 261 | 160 | 5 | 27 | 286 | 10 | 237 | 2.29e-23 | 96.3 |
| Msa0378860 | MtrunA17_Chr3g0103151 | 45.545 | 101 | 47 | 2 | 10 | 104 | 9 | 107 | 1.23e-22 | 92.0 |
| Msa0378860 | MtrunA17_Chr3g0103191 | 44.554 | 101 | 48 | 2 | 10 | 104 | 9 | 107 | 3.29e-22 | 93.6 |
| Msa0378860 | MtrunA17_Chr3g0103171 | 27.306 | 271 | 169 | 9 | 29 | 282 | 6 | 265 | 3.70e-22 | 93.6 |
| Msa0378860 | MtrunA17_Chr1g0163251 | 30.797 | 276 | 164 | 9 | 22 | 281 | 14 | 278 | 8.21e-21 | 91.7 |
| Msa0378860 | MtrunA17_Chr1g0154131 | 26.518 | 313 | 182 | 10 | 11 | 290 | 177 | 474 | 3.63e-19 | 87.8 |
| Msa0378860 | MtrunA17_Chr5g0419201 | 36.364 | 110 | 59 | 2 | 13 | 111 | 16 | 125 | 1.00e-18 | 82.4 |
| Msa0378860 | MtrunA17_Chr3g0077411 | 24.823 | 282 | 177 | 8 | 11 | 282 | 260 | 516 | 1.10e-18 | 86.3 |
| Msa0378860 | MtrunA17_Chr3g0077411 | 26.154 | 260 | 144 | 9 | 12 | 270 | 24 | 236 | 1.38e-14 | 73.9 |
| Msa0378860 | MtrunA17_Chr3g0077461 | 27.925 | 265 | 140 | 8 | 12 | 270 | 236 | 455 | 1.96e-18 | 85.5 |
| Msa0378860 | MtrunA17_Chr3g0077461 | 26.939 | 245 | 120 | 10 | 29 | 270 | 23 | 211 | 6.77e-12 | 65.9 |
| Msa0378860 | MtrunA17_Chr4g0033961 | 38.168 | 131 | 69 | 3 | 164 | 288 | 269 | 393 | 2.62e-18 | 84.7 |
| Msa0378860 | MtrunA17_Chr4g0033961 | 33.036 | 112 | 67 | 1 | 13 | 116 | 6 | 117 | 2.80e-14 | 72.8 |
| Msa0378860 | MtrunA17_Chr5g0429931 | 26.054 | 261 | 164 | 8 | 29 | 286 | 11 | 245 | 5.46e-18 | 81.6 |
| Msa0378860 | MtrunA17_Chr1g0162441 | 37.594 | 133 | 71 | 3 | 164 | 290 | 273 | 399 | 1.10e-17 | 83.2 |
| Msa0378860 | MtrunA17_Chr1g0162441 | 36.471 | 85 | 54 | 0 | 13 | 97 | 7 | 91 | 5.12e-14 | 72.0 |
| Msa0378860 | MtrunA17_Chr1g0163201 | 29.496 | 278 | 162 | 10 | 29 | 283 | 19 | 285 | 1.23e-17 | 82.8 |
| Msa0378860 | MtrunA17_Chr3g0077431 | 26.407 | 231 | 136 | 5 | 57 | 286 | 1 | 198 | 2.44e-16 | 76.3 |
| Msa0378860 | MtrunA17_Chr6g0467351 | 32.847 | 137 | 78 | 3 | 11 | 140 | 13 | 142 | 7.71e-14 | 69.7 |
| Msa0378860 | MtrunA17_Chr1g0163101 | 33.077 | 130 | 76 | 4 | 8 | 129 | 12 | 138 | 1.59e-13 | 67.8 |
| Msa0378860 | MtrunA17_Chr3g0077361 | 24.615 | 260 | 150 | 8 | 12 | 270 | 39 | 253 | 3.05e-13 | 70.1 |
| Msa0378860 | MtrunA17_Chr3g0077421 | 27.778 | 234 | 130 | 8 | 57 | 286 | 1 | 199 | 4.65e-13 | 67.0 |
| Msa0378860 | MtrunA17_Chr3g0077441 | 27.778 | 234 | 130 | 8 | 57 | 286 | 1 | 199 | 4.65e-13 | 67.0 |
| Msa0378860 | MtrunA17_Chr1g0163061 | 39.423 | 104 | 56 | 2 | 11 | 107 | 13 | 116 | 2.39e-12 | 66.2 |
| Msa0378860 | MtrunA17_Chr1g0154251 | 32.955 | 88 | 58 | 1 | 11 | 98 | 25 | 111 | 6.31e-12 | 65.9 |
| Msa0378860 | MtrunA17_Chr1g0154101 | 34.091 | 88 | 58 | 0 | 11 | 98 | 23 | 110 | 6.89e-12 | 66.2 |
| Msa0378860 | MtrunA17_Chr4g0009491 | 25.446 | 224 | 133 | 6 | 12 | 229 | 224 | 419 | 9.66e-12 | 65.5 |
| Msa0378860 | MtrunA17_Chr1g0163241 | 35.849 | 106 | 60 | 2 | 29 | 128 | 23 | 126 | 2.32e-11 | 61.6 |
| Msa0378860 | MtrunA17_Chr1g0163091 | 35.922 | 103 | 61 | 3 | 181 | 283 | 22 | 119 | 2.37e-11 | 61.2 |
| Msa0378860 | MtrunA17_Chr1g0154211 | 31.818 | 88 | 59 | 1 | 11 | 98 | 21 | 107 | 4.91e-11 | 63.2 |
| Msa0378860 | MtrunA17_Chr1g0162411 | 35.294 | 85 | 55 | 0 | 13 | 97 | 7 | 91 | 4.95e-11 | 63.2 |
| Msa0378860 | MtrunA17_Chr1g0163191 | 42.105 | 76 | 42 | 1 | 22 | 97 | 14 | 87 | 5.41e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378860 | AT3G18990.2 | 27.874 | 348 | 170 | 10 | 10 | 286 | 2 | 339 | 4.39e-30 | 117 |
| Msa0378860 | AT3G18990.1 | 27.826 | 345 | 168 | 10 | 10 | 283 | 2 | 336 | 4.48e-30 | 117 |
| Msa0378860 | AT4G33280.1 | 28.615 | 325 | 171 | 13 | 11 | 289 | 18 | 327 | 1.03e-17 | 82.8 |
| Msa0378860 | AT4G01580.1 | 36.538 | 104 | 60 | 1 | 13 | 110 | 30 | 133 | 7.63e-16 | 75.1 |
| Msa0378860 | AT1G49475.1 | 35.185 | 108 | 63 | 2 | 13 | 114 | 34 | 140 | 5.51e-15 | 72.4 |
| Msa0378860 | AT3G18960.2 | 35.577 | 104 | 61 | 1 | 13 | 110 | 30 | 133 | 7.40e-15 | 72.4 |
| Msa0378860 | AT3G18960.1 | 35.577 | 104 | 61 | 1 | 13 | 110 | 30 | 133 | 7.96e-15 | 72.4 |
| Msa0378860 | AT1G49480.3 | 31.844 | 179 | 99 | 7 | 111 | 283 | 60 | 221 | 1.02e-13 | 69.7 |
| Msa0378860 | AT1G49480.1 | 31.844 | 179 | 99 | 7 | 111 | 283 | 60 | 221 | 1.02e-13 | 69.7 |
| Msa0378860 | AT1G49480.2 | 31.844 | 179 | 99 | 7 | 111 | 283 | 60 | 221 | 1.02e-13 | 69.7 |
| Msa0378860 | AT3G18960.3 | 37.500 | 88 | 49 | 1 | 29 | 110 | 9 | 96 | 6.32e-12 | 63.5 |
Find 53 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAAATTGGAAATTAAATT+TGG | 0.186782 | 3_1:+79742349 | Msa0378860:CDS |
| CATATCAAAGTAAGATTAAT+TGG | 0.187322 | 3_1:+79744145 | Msa0378860:CDS |
| TATTTCTCCACAAGCTTTCT+TGG | 0.203077 | 3_1:-79742281 | None:intergenic |
| GCTAACTCCTCCTTTGAAAT+TGG | 0.203833 | 3_1:+79742620 | Msa0378860:CDS |
| CAAAGATGTGCACATGAAAA+AGG | 0.205065 | 3_1:-79742478 | None:intergenic |
| CTTTCCAAGTTCATATATTC+AGG | 0.253552 | 3_1:+79744091 | Msa0378860:CDS |
| GACAAGAGTTGAAGCTAAAA+AGG | 0.273172 | 3_1:+79742532 | Msa0378860:CDS |
| TATGTTAAGCTACTTCTTCA+TGG | 0.302623 | 3_1:+79741366 | None:intergenic |
| AGACTCCAAATGGTGTAAAT+TGG | 0.312711 | 3_1:+79742336 | Msa0378860:CDS |
| AATTTCCAATTTACACCATT+TGG | 0.315099 | 3_1:-79742341 | None:intergenic |
| AGAAAGCTTGTGGAGAAATA+TGG | 0.315667 | 3_1:+79742284 | Msa0378860:CDS |
| TGCAACTTACCAGAAGAAAA+TGG | 0.347556 | 3_1:-79743474 | None:intergenic |
| ATCCTGATTCGGTACTTTGC+AGG | 0.347997 | 3_1:-79743952 | None:intergenic |
| CTACAATCTTCATTATTTGA+AGG | 0.379644 | 3_1:-79742578 | None:intergenic |
| AAGTGTCAAATGGCAGAGTT+TGG | 0.384047 | 3_1:+79743929 | Msa0378860:CDS |
| GGCCTGCAAAGTACCGAATC+AGG | 0.422243 | 3_1:+79743950 | Msa0378860:CDS |
| TGGCAAAATATGGTTTCAAA+AGG | 0.425042 | 3_1:+79742382 | Msa0378860:CDS |
| TCCATCCTTTGTTGTTGTCA+TGG | 0.427556 | 3_1:+79743432 | Msa0378860:CDS |
| GCAGTAGTTGTGTTAATGTT+CGG | 0.444915 | 3_1:+79742645 | Msa0378860:CDS |
| CCATCCTTTGTTGTTGTCAT+GGG | 0.446533 | 3_1:+79743433 | Msa0378860:CDS |
| TTACAAGCTTTCCTTGATGA+AGG | 0.456239 | 3_1:-79741447 | None:intergenic |
| TTAGCTTCAACTCTTGTCAA+AGG | 0.484921 | 3_1:-79742527 | None:intergenic |
| ATGATCTTGAAGAAGTGAAC+TGG | 0.487555 | 3_1:-79741412 | None:intergenic |
| TAGCTTCAACTCTTGTCAAA+GGG | 0.493656 | 3_1:-79742526 | None:intergenic |
| CTTTCTGTCAATATGATGTA+CGG | 0.494299 | 3_1:-79742684 | None:intergenic |
| GAAGACAATAACTTGAAAGT+TGG | 0.499244 | 3_1:+79744027 | Msa0378860:CDS |
| ACATGTGTAAAGACTCCAAA+TGG | 0.500501 | 3_1:+79742326 | Msa0378860:CDS |
| TCTCCCTGAATATATGAACT+TGG | 0.502600 | 3_1:-79744095 | None:intergenic |
| CGTACATCATATTGACAGAA+AGG | 0.506265 | 3_1:+79742685 | Msa0378860:CDS |
| CATCTTTGATAAGAGTGCCT+TGG | 0.514558 | 3_1:+79742493 | Msa0378860:intron |
| AAATATGGTTTCAAAAGGGA+TGG | 0.524548 | 3_1:+79742387 | Msa0378860:CDS |
| CATATTGACAGAAAGGGAAA+AGG | 0.525115 | 3_1:+79742692 | Msa0378860:CDS |
| TAATGTTCGGAAATTTCAAA+AGG | 0.529933 | 3_1:+79742658 | Msa0378860:CDS |
| CTGTGTGGGACATCCTGATT+CGG | 0.531424 | 3_1:-79743963 | None:intergenic |
| CAGACTATACCGTCTATGTT+CGG | 0.532014 | 3_1:+79743859 | Msa0378860:intron |
| GGCAAAATATGGTTTCAAAA+GGG | 0.535267 | 3_1:+79742383 | Msa0378860:CDS |
| TTTCCAAGTTCATATATTCA+GGG | 0.536079 | 3_1:+79744092 | Msa0378860:CDS |
| ACTACTGCTTCCAATTTCAA+AGG | 0.542132 | 3_1:-79742630 | None:intergenic |
| GTACATCATATTGACAGAAA+GGG | 0.549586 | 3_1:+79742686 | Msa0378860:CDS |
| CAAAGGGCTATTTATCTCCA+AGG | 0.557179 | 3_1:-79742510 | None:intergenic |
| CCCATGACAACAACAAAGGA+TGG | 0.571041 | 3_1:-79743433 | None:intergenic |
| GAGTATCATTCTCTAGCTCA+TGG | 0.575939 | 3_1:+79742422 | Msa0378860:CDS |
| CTAAGATTTGAACTCTCAAG+TGG | 0.579522 | 3_1:+79743988 | Msa0378860:CDS |
| CTTACTCAAAACCTTCATCA+AGG | 0.582547 | 3_1:+79741436 | Msa0378860:CDS |
| GATTTGAACTCTCAAGTGGA+TGG | 0.585291 | 3_1:+79743992 | Msa0378860:CDS |
| GATGATGCCAAGAAAGCTTG+TGG | 0.596116 | 3_1:+79742274 | Msa0378860:intron |
| TTCAAATCTTAGTCCTGTGT+GGG | 0.598172 | 3_1:-79743977 | None:intergenic |
| TTTAATTTGAATAAGAAGCG+AGG | 0.603085 | 3_1:+79743892 | Msa0378860:CDS |
| ACTGCTTCCAATTTCAAAGG+AGG | 0.612452 | 3_1:-79742627 | None:intergenic |
| GTTCAAATCTTAGTCCTGTG+TGG | 0.647989 | 3_1:-79743978 | None:intergenic |
| TGTCTCTTACCGAACATAGA+CGG | 0.669663 | 3_1:-79743868 | None:intergenic |
| CGAATCAGGATGTCCCACAC+AGG | 0.680142 | 3_1:+79743964 | Msa0378860:CDS |
| TGCACCCATGACAACAACAA+AGG | 0.693553 | 3_1:-79743437 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTATATTAAAAAACATAAAA+AGG | - | chr3_1:79741613-79741632 | None:intergenic | 10.0% |
| !! | ATCTGTAATATAAATTATTT+AGG | - | chr3_1:79742006-79742025 | None:intergenic | 10.0% |
| !!! | ATTAATCTGGTTTAATTAAT+TGG | + | chr3_1:79742249-79742268 | Msa0378860:intron | 15.0% |
| !! | TGTAAATTGGAAATTAAATT+TGG | + | chr3_1:79742349-79742368 | Msa0378860:CDS | 15.0% |
| !!! | TTCATGTTATCATTTTTAAA+TGG | + | chr3_1:79742782-79742801 | Msa0378860:intron | 15.0% |
| !!! | AAGTTGATTTTAACATTTTT+TGG | + | chr3_1:79742911-79742930 | Msa0378860:intron | 15.0% |
| !!! | TTATTATTCAACTCATTTTT+AGG | + | chr3_1:79743031-79743050 | Msa0378860:intron | 15.0% |
| !! | TGACATTTATATCAATATGA+TGG | - | chr3_1:79741882-79741901 | None:intergenic | 20.0% |
| !! | TTAAATTTGGTAAAAAGTGA+TGG | + | chr3_1:79742362-79742381 | Msa0378860:CDS | 20.0% |
| !! | TTCTTTCATATTTAAAAAGC+AGG | - | chr3_1:79742454-79742473 | None:intergenic | 20.0% |
| !!! | ATTGATTTTGTTTCTATAGT+TGG | + | chr3_1:79742948-79742967 | Msa0378860:intron | 20.0% |
| !!! | ATGAATTGATTTAGTAAAGA+TGG | - | chr3_1:79743267-79743286 | None:intergenic | 20.0% |
| !! | ACAACTAAATATCTACTTTA+TGG | + | chr3_1:79743318-79743337 | Msa0378860:intron | 20.0% |
| !! | CTCCATTAAGAAATATATAT+TGG | + | chr3_1:79743562-79743581 | Msa0378860:intron | 20.0% |
| !! | GACCAATATATATTTCTTAA+TGG | - | chr3_1:79743567-79743586 | None:intergenic | 20.0% |
| !! | CATATCAAAGTAAGATTAAT+TGG | + | chr3_1:79744145-79744164 | Msa0378860:CDS | 20.0% |
| ! | GAACAATCTATAACTCAAAT+TGG | - | chr3_1:79741474-79741493 | None:intergenic | 25.0% |
| !! | TGATGAATTTTACATGCTTT+AGG | - | chr3_1:79741711-79741730 | None:intergenic | 25.0% |
| !! | ATTTTCTTAAGCTTTTCTTG+TGG | + | chr3_1:79742071-79742090 | Msa0378860:intron | 25.0% |
| ! | CACTATCATACATATTAATC+TGG | + | chr3_1:79742236-79742255 | Msa0378860:intron | 25.0% |
| ! | AATTTCCAATTTACACCATT+TGG | - | chr3_1:79742344-79742363 | None:intergenic | 25.0% |
| ! | TAAAAAGTGATGGCAAAATA+TGG | + | chr3_1:79742372-79742391 | Msa0378860:CDS | 25.0% |
| ! | CTACAATCTTCATTATTTGA+AGG | - | chr3_1:79742581-79742600 | None:intergenic | 25.0% |
| ! | TAATGTTCGGAAATTTCAAA+AGG | + | chr3_1:79742658-79742677 | Msa0378860:CDS | 25.0% |
| !!! | AAGATGGTTTTAGTTAAAAG+TGG | - | chr3_1:79743251-79743270 | None:intergenic | 25.0% |
| ! | GTAAGTTGCAAAGATAAATT+TGG | + | chr3_1:79743487-79743506 | Msa0378860:intron | 25.0% |
| ! | TTTCTTAATGGAGAAAGATT+TGG | - | chr3_1:79743555-79743574 | None:intergenic | 25.0% |
| !!! | TTTAATTTGAATAAGAAGCG+AGG | + | chr3_1:79743892-79743911 | Msa0378860:CDS | 25.0% |
| !!! | ATTCATTTTCAAGTGTCAAA+TGG | + | chr3_1:79743919-79743938 | Msa0378860:CDS | 25.0% |
| ! | TTTCCAAGTTCATATATTCA+GGG | + | chr3_1:79744092-79744111 | Msa0378860:CDS | 25.0% |
| !! | TCTATTACTTTAACTTGCTC+TGG | + | chr3_1:79741933-79741952 | Msa0378860:intron | 30.0% |
| TAGATGGAGTCTATAAACTA+TGG | + | chr3_1:79742035-79742054 | Msa0378860:intron | 30.0% | |
| AGATGGAGTCTATAAACTAT+GGG | + | chr3_1:79742036-79742055 | Msa0378860:intron | 30.0% | |
| ! | AATTCAGCCTTCTTTGTTTA+GGG | + | chr3_1:79742131-79742150 | Msa0378860:intron | 30.0% |
| ATTTGACAACTCGATGAAAT+TGG | + | chr3_1:79742175-79742194 | Msa0378860:intron | 30.0% | |
| ! | GTCTTTACACATGTAGTTTT+CGG | - | chr3_1:79742320-79742339 | None:intergenic | 30.0% |
| TGGCAAAATATGGTTTCAAA+AGG | + | chr3_1:79742382-79742401 | Msa0378860:CDS | 30.0% | |
| GGCAAAATATGGTTTCAAAA+GGG | + | chr3_1:79742383-79742402 | Msa0378860:CDS | 30.0% | |
| AAATATGGTTTCAAAAGGGA+TGG | + | chr3_1:79742387-79742406 | Msa0378860:CDS | 30.0% | |
| CATATTTAAAAAGCAGGAGA+TGG | - | chr3_1:79742448-79742467 | None:intergenic | 30.0% | |
| AAAGATGTGCACATGAAAAA+GGG | - | chr3_1:79742480-79742499 | None:intergenic | 30.0% | |
| CTTTCTGTCAATATGATGTA+CGG | - | chr3_1:79742687-79742706 | None:intergenic | 30.0% | |
| GTACATCATATTGACAGAAA+GGG | + | chr3_1:79742686-79742705 | Msa0378860:CDS | 30.0% | |
| TTATACCTAGAGTTAACATG+AGG | - | chr3_1:79742814-79742833 | None:intergenic | 30.0% | |
| ! | TGGCATTTTTATTGTGTGTT+TGG | + | chr3_1:79742850-79742869 | Msa0378860:intron | 30.0% |
| !!! | CATTTTTTGGTCATGTCAAT+TGG | + | chr3_1:79742924-79742943 | Msa0378860:intron | 30.0% |
| TTGAGTGCAAAAATCATCTT+TGG | - | chr3_1:79743009-79743028 | None:intergenic | 30.0% | |
| ! | ATTGACTTTGTCTCAAGAAT+TGG | + | chr3_1:79743108-79743127 | Msa0378860:intron | 30.0% |
| TTGAGTGTAAAATTCACTCT+TGG | - | chr3_1:79743168-79743187 | None:intergenic | 30.0% | |
| ! | GATTGTGAAGTGTTTATGTT+TGG | - | chr3_1:79743225-79743244 | None:intergenic | 30.0% |
| TTATCAGCATCAACAATCAT+TGG | - | chr3_1:79743370-79743389 | None:intergenic | 30.0% | |
| ! | GATTTGGTTATTGATGTTGT+TGG | - | chr3_1:79743539-79743558 | None:intergenic | 30.0% |
| GAAGACAATAACTTGAAAGT+TGG | + | chr3_1:79744027-79744046 | Msa0378860:CDS | 30.0% | |
| CTTTCCAAGTTCATATATTC+AGG | + | chr3_1:79744091-79744110 | Msa0378860:CDS | 30.0% | |
| ATGATCTTGAAGAAGTGAAC+TGG | - | chr3_1:79741415-79741434 | None:intergenic | 35.0% | |
| CTTACTCAAAACCTTCATCA+AGG | + | chr3_1:79741436-79741455 | Msa0378860:CDS | 35.0% | |
| TTACAAGCTTTCCTTGATGA+AGG | - | chr3_1:79741450-79741469 | None:intergenic | 35.0% | |
| TCTTGTGACACACTAAAAGT+TGG | - | chr3_1:79741838-79741857 | None:intergenic | 35.0% | |
| !! | TTTAACTTGCTCTGGAAGAA+TGG | + | chr3_1:79741941-79741960 | Msa0378860:intron | 35.0% |
| ! | TACAGATGAGCTTTTCTAGA+TGG | + | chr3_1:79742019-79742038 | Msa0378860:intron | 35.0% |
| ! | TTGTGGACTGTGAAAGTTAT+GGG | + | chr3_1:79742088-79742107 | Msa0378860:intron | 35.0% |
| ! | CAATTCAGCCTTCTTTGTTT+AGG | + | chr3_1:79742130-79742149 | Msa0378860:intron | 35.0% |
| ! | GTAGATGTTGTCTAAAGTAG+TGG | + | chr3_1:79742197-79742216 | Msa0378860:intron | 35.0% |
| TATTTCTCCACAAGCTTTCT+TGG | - | chr3_1:79742284-79742303 | None:intergenic | 35.0% | |
| AGAAAGCTTGTGGAGAAATA+TGG | + | chr3_1:79742284-79742303 | Msa0378860:CDS | 35.0% | |
| ACATGTGTAAAGACTCCAAA+TGG | + | chr3_1:79742326-79742345 | Msa0378860:CDS | 35.0% | |
| AGACTCCAAATGGTGTAAAT+TGG | + | chr3_1:79742336-79742355 | Msa0378860:CDS | 35.0% | |
| CAAAGATGTGCACATGAAAA+AGG | - | chr3_1:79742481-79742500 | None:intergenic | 35.0% | |
| TAGCTTCAACTCTTGTCAAA+GGG | - | chr3_1:79742529-79742548 | None:intergenic | 35.0% | |
| TTAGCTTCAACTCTTGTCAA+AGG | - | chr3_1:79742530-79742549 | None:intergenic | 35.0% | |
| GACAAGAGTTGAAGCTAAAA+AGG | + | chr3_1:79742532-79742551 | Msa0378860:CDS | 35.0% | |
| AAAAAGGTCTTCAACTGTCA+AGG | + | chr3_1:79742548-79742567 | Msa0378860:CDS | 35.0% | |
| ACTACTGCTTCCAATTTCAA+AGG | - | chr3_1:79742633-79742652 | None:intergenic | 35.0% | |
| GCAGTAGTTGTGTTAATGTT+CGG | + | chr3_1:79742645-79742664 | Msa0378860:CDS | 35.0% | |
| CGTACATCATATTGACAGAA+AGG | + | chr3_1:79742685-79742704 | Msa0378860:CDS | 35.0% | |
| CATATTGACAGAAAGGGAAA+AGG | + | chr3_1:79742692-79742711 | Msa0378860:CDS | 35.0% | |
| ATGTACCTCATGTTAACTCT+AGG | + | chr3_1:79742806-79742825 | Msa0378860:intron | 35.0% | |
| TAACTCTAGGTATAACCATG+TGG | + | chr3_1:79742819-79742838 | Msa0378860:intron | 35.0% | |
| ATAACCATGTGGAAAATGAC+TGG | + | chr3_1:79742830-79742849 | Msa0378860:intron | 35.0% | |
| ! | GTTTTCCTGCAAAATCGAAA+TGG | - | chr3_1:79743348-79743367 | None:intergenic | 35.0% |
| TGCAACTTACCAGAAGAAAA+TGG | - | chr3_1:79743477-79743496 | None:intergenic | 35.0% | |
| ! | CATTTGCCTTTTCTTTTGCT+TGG | + | chr3_1:79743836-79743855 | Msa0378860:intron | 35.0% |
| TTCAAATCTTAGTCCTGTGT+GGG | - | chr3_1:79743980-79743999 | None:intergenic | 35.0% | |
| CTAAGATTTGAACTCTCAAG+TGG | + | chr3_1:79743988-79744007 | Msa0378860:CDS | 35.0% | |
| TCTCCCTGAATATATGAACT+TGG | - | chr3_1:79744098-79744117 | None:intergenic | 35.0% | |
| GATGGTACATGCTACTATCT+CGG | - | chr3_1:79741864-79741883 | None:intergenic | 40.0% | |
| TGATGTAGTCAGCTGCAATA+TGG | - | chr3_1:79741967-79741986 | None:intergenic | 40.0% | |
| ! | CTTGTGGACTGTGAAAGTTA+TGG | + | chr3_1:79742087-79742106 | Msa0378860:intron | 40.0% |
| GAAGGCTGAATTGAGTAAAC+AGG | - | chr3_1:79742123-79742142 | None:intergenic | 40.0% | |
| CGAATTGCCCTAAACAAAGA+AGG | - | chr3_1:79742141-79742160 | None:intergenic | 40.0% | |
| ! | GAGTATCATTCTCTAGCTCA+TGG | + | chr3_1:79742422-79742441 | Msa0378860:CDS | 40.0% |
| !! | CATCTTTGATAAGAGTGCCT+TGG | + | chr3_1:79742493-79742512 | Msa0378860:intron | 40.0% |
| CAAAGGGCTATTTATCTCCA+AGG | - | chr3_1:79742513-79742532 | None:intergenic | 40.0% | |
| !! | GCTAACTCCTCCTTTGAAAT+TGG | + | chr3_1:79742620-79742639 | Msa0378860:CDS | 40.0% |
| ACTGCTTCCAATTTCAAAGG+AGG | - | chr3_1:79742630-79742649 | None:intergenic | 40.0% | |
| !! | AATGCCAGTCATTTTCCACA+TGG | - | chr3_1:79742837-79742856 | None:intergenic | 40.0% |
| ! | TTGTGTGTTTGGTTTCACAG+TGG | + | chr3_1:79742861-79742880 | Msa0378860:intron | 40.0% |
| ! | TGTGTGTTTGGTTTCACAGT+GGG | + | chr3_1:79742862-79742881 | Msa0378860:intron | 40.0% |
| CCATTTCACGTTCAACTCAT+CGG | + | chr3_1:79743074-79743093 | Msa0378860:intron | 40.0% | |
| ! | GTGTTCCATTTCGATTTTGC+AGG | + | chr3_1:79743340-79743359 | Msa0378860:intron | 40.0% |
| !! | TCCATCCTTTGTTGTTGTCA+TGG | + | chr3_1:79743432-79743451 | Msa0378860:CDS | 40.0% |
| !! | CCATCCTTTGTTGTTGTCAT+GGG | + | chr3_1:79743433-79743452 | Msa0378860:CDS | 40.0% |
| AGTCTGCCAAGCAAAAGAAA+AGG | - | chr3_1:79743845-79743864 | None:intergenic | 40.0% | |
| CAGACTATACCGTCTATGTT+CGG | + | chr3_1:79743859-79743878 | Msa0378860:intron | 40.0% | |
| TGTCTCTTACCGAACATAGA+CGG | - | chr3_1:79743871-79743890 | None:intergenic | 40.0% | |
| AAGTGTCAAATGGCAGAGTT+TGG | + | chr3_1:79743929-79743948 | Msa0378860:CDS | 40.0% | |
| GTTCAAATCTTAGTCCTGTG+TGG | - | chr3_1:79743981-79744000 | None:intergenic | 40.0% | |
| GATTTGAACTCTCAAGTGGA+TGG | + | chr3_1:79743992-79744011 | Msa0378860:CDS | 40.0% | |
| CTGAATTGAGTAAACAGGCC+GGG | - | chr3_1:79742118-79742137 | None:intergenic | 45.0% | |
| GCTGAATTGAGTAAACAGGC+CGG | - | chr3_1:79742119-79742138 | None:intergenic | 45.0% | |
| ! | TTGTTTAGGGCAATTCGAGC+TGG | + | chr3_1:79742144-79742163 | Msa0378860:intron | 45.0% |
| ! | TGTTTAGGGCAATTCGAGCT+GGG | + | chr3_1:79742145-79742164 | Msa0378860:intron | 45.0% |
| GATGATGCCAAGAAAGCTTG+TGG | + | chr3_1:79742274-79742293 | Msa0378860:intron | 45.0% | |
| ! | GTGTGTTTGGTTTCACAGTG+GGG | + | chr3_1:79742863-79742882 | Msa0378860:intron | 45.0% |
| ! | CCGATGAGTTGAACGTGAAA+TGG | - | chr3_1:79743077-79743096 | None:intergenic | 45.0% |
| CCCATGACAACAACAAAGGA+TGG | - | chr3_1:79743436-79743455 | None:intergenic | 45.0% | |
| TGCACCCATGACAACAACAA+AGG | - | chr3_1:79743440-79743459 | None:intergenic | 45.0% | |
| ! | CGTTGAGCACCATTTTCTTC+TGG | + | chr3_1:79743465-79743484 | Msa0378860:CDS | 45.0% |
| !! | ATCCTGATTCGGTACTTTGC+AGG | - | chr3_1:79743955-79743974 | None:intergenic | 45.0% |
| !!! | TTTTTTATGTTTATAAAAAT+TGG | - | chr3_1:79743296-79743315 | None:intergenic | 5.0% |
| GTGAAAGTTATGGGCTTGCC+CGG | + | chr3_1:79742097-79742116 | Msa0378860:intron | 50.0% | |
| ACAGTGGGGAGAGTCAAAAG+TGG | + | chr3_1:79742877-79742896 | Msa0378860:intron | 50.0% | |
| CTGTGTGGGACATCCTGATT+CGG | - | chr3_1:79743966-79743985 | None:intergenic | 50.0% | |
| TTAGGGCAATTCGAGCTGGG+CGG | + | chr3_1:79742148-79742167 | Msa0378860:intron | 55.0% | |
| !! | GGCCTGCAAAGTACCGAATC+AGG | + | chr3_1:79743950-79743969 | Msa0378860:CDS | 55.0% |
| CGAATCAGGATGTCCCACAC+AGG | + | chr3_1:79743964-79743983 | Msa0378860:CDS | 55.0% | |
| TAGGGCAATTCGAGCTGGGC+GGG | + | chr3_1:79742149-79742168 | Msa0378860:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 79741375 | 79744200 | 79741375 | ID=Msa0378860;Name=Msa0378860 |
| chr3_1 | mRNA | 79741375 | 79744200 | 79741375 | ID=Msa0378860-mRNA-1;Parent=Msa0378860;Name=Msa0378860-mRNA-1;_AED=0.11;_eAED=0.11;_QI=10|0|0|0.8|0.75|0.6|5|0|312 |
| chr3_1 | exon | 79741375 | 79741465 | 79741375 | ID=Msa0378860-mRNA-1:exon:19685;Parent=Msa0378860-mRNA-1 |
| chr3_1 | exon | 79742275 | 79742487 | 79742275 | ID=Msa0378860-mRNA-1:exon:19686;Parent=Msa0378860-mRNA-1 |
| chr3_1 | exon | 79742506 | 79742713 | 79742506 | ID=Msa0378860-mRNA-1:exon:19687;Parent=Msa0378860-mRNA-1 |
| chr3_1 | exon | 79743392 | 79743486 | 79743392 | ID=Msa0378860-mRNA-1:exon:19688;Parent=Msa0378860-mRNA-1 |
| chr3_1 | exon | 79743862 | 79744200 | 79743862 | ID=Msa0378860-mRNA-1:exon:19689;Parent=Msa0378860-mRNA-1 |
| chr3_1 | five_prime_UTR | 79741375 | 79741384 | 79741375 | ID=Msa0378860-mRNA-1:five_prime_utr;Parent=Msa0378860-mRNA-1 |
| chr3_1 | CDS | 79741385 | 79741465 | 79741385 | ID=Msa0378860-mRNA-1:cds;Parent=Msa0378860-mRNA-1 |
| chr3_1 | CDS | 79742275 | 79742487 | 79742275 | ID=Msa0378860-mRNA-1:cds;Parent=Msa0378860-mRNA-1 |
| chr3_1 | CDS | 79742506 | 79742713 | 79742506 | ID=Msa0378860-mRNA-1:cds;Parent=Msa0378860-mRNA-1 |
| chr3_1 | CDS | 79743392 | 79743486 | 79743392 | ID=Msa0378860-mRNA-1:cds;Parent=Msa0378860-mRNA-1 |
| chr3_1 | CDS | 79743862 | 79744200 | 79743862 | ID=Msa0378860-mRNA-1:cds;Parent=Msa0378860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
