AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0380780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380780 MtrunA17_Chr3g0134451 95.912 318 13 0 1 318 1 318 0.0 636
Msa0380780 MtrunA17_Chr5g0425191 80.328 61 12 0 1 61 1 61 1.11e-29 109
Msa0380780 MtrunA17_Chr4g0060841 30.000 250 149 7 1 230 1 244 1.18e-28 113
Msa0380780 MtrunA17_Chr4g0044071 77.049 61 14 0 1 61 1 61 1.46e-27 103
Msa0380780 MtrunA17_Chr3g0097101 62.857 70 25 1 1 70 16 84 7.03e-23 95.1
Msa0380780 MtrunA17_Chr8g0351041 65.714 70 23 1 1 70 1 69 7.34e-23 93.2
Msa0380780 MtrunA17_Chr3g0077501 64.286 70 24 1 1 70 1 69 8.96e-23 94.4
Msa0380780 MtrunA17_Chr8g0351031 65.714 70 23 1 1 70 1 69 1.50e-22 94.0
Msa0380780 MtrunA17_Chr2g0284911 62.857 70 25 1 1 70 16 84 1.80e-22 94.4
Msa0380780 MtrunA17_Chr4g0049541 36.095 169 80 3 1 169 1 141 3.06e-22 92.8
Msa0380780 MtrunA17_Chr8g0380021 62.857 70 25 1 1 70 17 85 3.31e-22 93.2
Msa0380780 MtrunA17_Chr5g0412461 68.571 70 21 1 1 70 1 69 5.83e-22 92.4
Msa0380780 MtrunA17_Chr5g0412271 68.571 70 21 1 1 70 1 69 7.60e-22 92.0
Msa0380780 MtrunA17_Chr7g0246431 61.429 70 26 1 1 70 1 69 1.25e-21 90.9
Msa0380780 MtrunA17_Chr4g0061691 36.686 169 81 3 1 169 1 143 1.46e-21 91.3
Msa0380780 MtrunA17_Chr8g0366231 55.128 78 35 0 1 78 1 78 1.46e-21 91.7
Msa0380780 MtrunA17_Chr5g0420091 57.143 70 30 0 1 70 1 70 1.99e-21 90.5
Msa0380780 MtrunA17_Chr4g0057151 53.261 92 38 2 1 88 1 91 2.67e-21 90.1
Msa0380780 MtrunA17_Chr1g0173161 60.870 69 27 0 1 69 1 69 3.18e-21 86.3
Msa0380780 MtrunA17_Chr2g0279821 36.047 172 82 4 1 172 1 144 3.80e-21 90.5
Msa0380780 MtrunA17_Chr4g0061671 57.143 70 30 0 1 70 1 70 4.29e-21 89.0
Msa0380780 MtrunA17_Chr3g0122251 60.000 70 28 0 1 70 1 70 4.81e-21 90.1
Msa0380780 MtrunA17_Chr5g0420081 55.128 78 35 0 1 78 1 78 8.77e-21 89.4
Msa0380780 MtrunA17_Chr5g0417661 59.016 61 25 0 1 61 56 116 1.06e-20 86.3
Msa0380780 MtrunA17_Chr6g0455511 58.571 70 29 0 1 70 1 70 1.10e-20 89.4
Msa0380780 MtrunA17_Chr7g0246381 61.290 62 24 0 1 62 1 62 1.21e-20 84.3
Msa0380780 MtrunA17_Chr7g0220111 57.143 70 30 0 1 70 1 70 1.24e-20 89.4
Msa0380780 MtrunA17_Chr7g0220121 36.686 169 79 4 1 169 1 141 1.77e-20 89.0
Msa0380780 MtrunA17_Chr8g0351051 60.000 70 27 1 1 70 1 69 4.75e-20 87.8
Msa0380780 MtrunA17_Chr6g0474371 55.714 70 31 0 1 70 1 70 1.18e-19 85.1
Msa0380780 MtrunA17_Chr1g0164791 56.338 71 30 1 1 70 1 71 1.39e-19 85.9
Msa0380780 MtrunA17_Chr8g0377561 64.912 57 20 0 1 57 1 57 1.45e-19 82.0
Msa0380780 MtrunA17_Chr5g0411691 55.714 70 30 1 1 70 1 69 1.55e-19 85.9
Msa0380780 MtrunA17_Chr2g0308251 61.667 60 23 0 1 60 1 60 1.91e-19 81.6
Msa0380780 MtrunA17_Chr3g0142191 42.400 125 62 4 1 118 1 122 2.88e-19 85.1
Msa0380780 MtrunA17_Chr1g0208561 45.098 102 53 3 2 101 9 109 3.46e-19 84.7
Msa0380780 MtrunA17_Chr3g0089141 45.098 102 53 3 2 101 9 109 7.81e-19 84.0
Msa0380780 MtrunA17_Chr5g0427921 57.377 61 26 0 1 61 1 61 1.46e-18 78.2
Msa0380780 MtrunA17_Chr1g0208581 45.098 102 53 3 2 101 9 109 1.61e-18 82.8
Msa0380780 MtrunA17_Chr3g0125241 54.930 71 31 1 1 70 26 96 2.55e-18 82.0
Msa0380780 MtrunA17_Chr4g0020221 52.632 76 35 1 1 76 1 75 3.21e-18 82.8
Msa0380780 MtrunA17_Chr8g0379021 54.930 71 31 1 2 72 12 81 4.69e-18 80.5
Msa0380780 MtrunA17_Chr5g0427401 52.857 70 32 1 1 70 1 69 8.79e-18 80.9
Msa0380780 MtrunA17_Chr5g0404951 50.515 97 45 3 1 95 1 96 9.79e-18 80.9
Msa0380780 MtrunA17_Chr1g0206701 43.269 104 56 3 2 103 9 111 1.84e-17 80.1
Msa0380780 MtrunA17_Chr4g0049901 35.036 137 77 4 1 126 27 162 2.10e-17 80.1
Msa0380780 MtrunA17_Chr8g0355091 31.176 170 95 5 2 165 9 162 3.06e-17 79.7
Msa0380780 MtrunA17_Chr3g0099421 44.231 104 55 3 2 103 34 136 3.66e-17 79.7
Msa0380780 MtrunA17_Chr4g0018421 46.575 73 39 0 1 73 1 73 3.70e-17 78.6
Msa0380780 MtrunA17_Chr3g0099411 42.308 104 57 3 2 103 9 111 3.98e-17 79.0
Msa0380780 MtrunA17_Chr1g0159661 41.176 102 58 2 1 101 1 101 5.88e-17 77.4
Msa0380780 MtrunA17_Chr2g0333981 36.806 144 67 5 1 141 11 133 9.01e-17 77.0
Msa0380780 MtrunA17_Chr1g0204111 54.286 70 31 1 1 70 17 85 9.16e-17 78.6
Msa0380780 MtrunA17_Chr1g0206721 42.157 102 56 3 2 101 9 109 1.20e-16 77.8
Msa0380780 MtrunA17_Chr2g0292791 36.567 134 66 5 2 133 9 125 1.33e-16 77.8
Msa0380780 MtrunA17_Chr2g0317451 45.556 90 47 2 2 90 9 97 4.70e-16 76.3
Msa0380780 MtrunA17_Chr2g0325971 40.196 102 58 2 2 101 9 109 4.90e-16 75.9
Msa0380780 MtrunA17_Chr6g0457851 28.662 157 96 4 1 141 11 167 4.93e-16 77.8
Msa0380780 MtrunA17_Chr4g0052061 33.858 127 75 3 1 119 1 126 5.27e-16 74.3
Msa0380780 MtrunA17_Chr2g0317481 45.556 90 47 2 2 90 9 97 5.45e-16 75.9
Msa0380780 MtrunA17_Chr1g0206991 37.008 127 72 4 2 126 9 129 5.86e-16 74.7
Msa0380780 MtrunA17_Chr1g0149391 42.308 104 57 3 2 103 9 111 9.10e-16 75.5
Msa0380780 MtrunA17_Chr5g0419601 49.315 73 36 1 1 73 8 79 1.11e-15 75.1
Msa0380780 MtrunA17_Chr1g0188671 43.810 105 56 3 2 104 47 150 1.31e-15 75.5
Msa0380780 MtrunA17_Chr1g0187361 41.905 105 58 2 2 104 9 112 2.12e-15 74.3
Msa0380780 MtrunA17_Chr1g0166611 50.000 68 31 1 13 77 17 84 4.62e-15 70.9
Msa0380780 MtrunA17_Chr3g0119901 38.835 103 60 2 1 101 8 109 5.49e-15 72.8
Msa0380780 MtrunA17_Chr1g0212151 34.862 109 63 3 1 101 1 109 7.45e-15 74.3
Msa0380780 MtrunA17_Chr1g0175611 45.205 73 39 1 1 73 1 72 9.59e-15 71.2
Msa0380780 MtrunA17_Chr2g0300421 42.718 103 54 4 2 101 9 109 1.36e-14 70.9
Msa0380780 MtrunA17_Chr3g0085241 46.250 80 41 2 1 79 40 118 1.38e-14 72.4
Msa0380780 MtrunA17_Chr8g0376821 45.070 71 38 1 1 71 1 70 1.99e-14 70.5
Msa0380780 MtrunA17_Chr4g0074101 37.302 126 69 4 1 121 1 121 2.10e-14 70.9
Msa0380780 MtrunA17_Chr3g0089151 48.571 70 35 1 2 71 9 77 2.44e-14 68.9
Msa0380780 MtrunA17_Chr8g0357771 32.667 150 80 6 1 139 1 140 2.63e-14 70.1
Msa0380780 MtrunA17_Chr4g0052081 44.444 72 39 1 1 72 1 71 2.87e-14 70.1
Msa0380780 MtrunA17_Chr4g0018951 58.621 58 23 1 15 72 25 81 3.53e-14 69.3
Msa0380780 MtrunA17_Chr1g0169761 45.070 71 38 1 1 71 1 70 6.34e-14 68.9
Msa0380780 MtrunA17_Chr2g0300441 42.718 103 54 4 2 101 9 109 1.12e-13 69.3
Msa0380780 MtrunA17_Chr5g0422421 47.887 71 36 1 2 72 9 78 1.27e-13 69.3
Msa0380780 MtrunA17_Chr5g0422941 47.887 71 36 1 2 72 9 78 1.55e-13 68.9
Msa0380780 MtrunA17_Chr1g0206691 40.000 95 54 3 11 103 1 94 1.74e-13 68.6
Msa0380780 MtrunA17_Chr1g0180591 41.096 73 42 1 1 73 1 72 2.90e-13 67.0
Msa0380780 MtrunA17_Chr1g0175601 39.759 83 49 1 1 83 1 82 5.28e-13 66.6
Msa0380780 MtrunA17_Chr8g0356071 42.254 71 40 1 1 71 1 70 2.75e-12 63.9
Msa0380780 MtrunA17_Chr6g0449851 32.110 109 66 3 1 101 1 109 2.98e-12 66.2
Msa0380780 MtrunA17_Chr3g0111841 51.667 60 28 1 8 67 2 60 8.58e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380780 AT1G22130.1 43.290 231 108 3 1 209 1 230 2.12e-52 176
Msa0380780 AT1G77980.1 41.631 233 112 2 1 209 1 233 1.03e-51 174
Msa0380780 AT1G77950.3 42.308 234 110 5 1 212 1 231 2.45e-48 162
Msa0380780 AT1G77950.2 42.308 234 110 5 1 212 1 231 2.45e-48 162
Msa0380780 AT1G77950.1 42.308 234 110 5 1 212 1 231 2.45e-48 162
Msa0380780 AT1G77950.4 42.308 234 110 5 1 212 1 231 2.45e-48 162
Msa0380780 AT1G18750.4 30.544 239 128 6 1 211 1 229 1.00e-28 114
Msa0380780 AT4G37435.1 36.979 192 106 4 1 187 1 182 1.23e-28 109
Msa0380780 AT1G18750.1 30.544 239 128 6 1 211 1 229 1.44e-28 114
Msa0380780 AT1G69540.1 35.593 177 103 4 1 172 1 171 3.98e-27 109
Msa0380780 AT1G69540.2 35.593 177 103 4 1 172 1 171 4.14e-27 109
Msa0380780 AT1G18750.3 49.020 102 49 2 1 99 1 102 4.96e-26 107
Msa0380780 AT2G03060.3 33.898 177 106 5 1 172 1 171 6.74e-26 106
Msa0380780 AT2G03060.7 33.898 177 106 5 1 172 1 171 6.74e-26 106
Msa0380780 AT2G03060.1 33.898 177 106 5 1 172 1 171 6.74e-26 106
Msa0380780 AT2G03060.2 33.898 177 106 5 1 172 1 171 7.62e-26 106
Msa0380780 AT4G09960.2 64.286 70 24 1 1 70 1 69 6.91e-23 94.7
Msa0380780 AT3G54340.1 35.242 227 119 8 1 213 1 213 7.76e-23 95.1
Msa0380780 AT4G09960.1 64.286 70 24 1 1 70 1 69 8.59e-23 95.1
Msa0380780 AT4G09960.6 64.286 70 24 1 1 70 2 70 9.62e-23 94.7
Msa0380780 AT3G58780.3 34.302 172 111 1 1 172 16 185 9.98e-23 95.9
Msa0380780 AT4G11880.2 62.857 70 26 0 1 70 1 70 1.08e-22 93.6
Msa0380780 AT4G11880.3 62.857 70 26 0 1 70 1 70 1.08e-22 93.6
Msa0380780 AT4G09960.5 64.286 70 24 1 1 70 11 79 1.27e-22 94.7
Msa0380780 AT4G09960.3 64.286 70 24 1 1 70 27 95 1.86e-22 94.7
Msa0380780 AT4G11880.4 62.857 70 26 0 1 70 1 70 2.45e-22 93.6
Msa0380780 AT4G11880.1 62.857 70 26 0 1 70 1 70 2.45e-22 93.6
Msa0380780 AT5G62165.6 38.150 173 78 4 1 172 1 145 2.61e-22 91.7
Msa0380780 AT5G62165.9 38.150 173 78 4 1 172 1 145 2.61e-22 91.7
Msa0380780 AT5G62165.7 38.150 173 78 4 1 172 1 145 2.61e-22 91.7
Msa0380780 AT5G62165.8 38.150 173 78 4 1 172 1 145 2.61e-22 91.7
Msa0380780 AT5G62165.13 38.150 173 78 4 1 172 1 145 2.61e-22 91.7
Msa0380780 AT4G18960.1 65.217 69 23 1 2 70 18 85 3.58e-22 94.0
Msa0380780 AT1G69120.2 35.465 172 85 2 1 172 1 146 3.94e-22 93.2
Msa0380780 AT3G58780.4 35.260 173 85 3 1 173 16 161 6.07e-22 94.0
Msa0380780 AT4G09960.4 64.286 70 24 1 1 70 96 164 6.50e-22 94.7
Msa0380780 AT2G42830.2 36.095 169 81 3 1 169 16 157 8.04e-22 92.8
Msa0380780 AT2G42830.1 36.095 169 81 3 1 169 16 157 8.47e-22 92.8
Msa0380780 AT3G58780.1 61.429 70 26 1 1 70 16 84 8.72e-22 92.8
Msa0380780 AT1G69120.1 35.465 172 85 2 1 172 1 146 1.01e-21 92.8
Msa0380780 AT5G62165.17 45.000 120 53 3 1 119 1 108 1.02e-21 90.1
Msa0380780 AT5G62165.12 45.000 120 53 3 1 119 1 108 1.02e-21 90.1
Msa0380780 AT5G62165.11 45.000 120 53 3 1 119 1 108 1.02e-21 90.1
Msa0380780 AT3G58780.5 61.429 70 26 1 1 70 22 90 1.07e-21 92.4
Msa0380780 AT3G57230.2 60.000 70 27 1 1 70 1 69 1.20e-21 89.7
Msa0380780 AT3G57390.3 64.286 70 24 1 1 70 1 69 1.44e-21 91.7
Msa0380780 AT5G60910.1 60.000 70 28 0 1 70 1 70 1.68e-21 91.7
Msa0380780 AT3G57390.1 64.286 70 24 1 1 70 1 69 2.12e-21 91.7
Msa0380780 AT5G62165.14 61.429 70 26 1 1 70 1 69 2.37e-21 87.8
Msa0380780 AT3G30260.1 58.571 70 29 0 1 70 1 70 2.71e-21 91.3
Msa0380780 AT2G45650.1 62.857 70 25 1 1 70 1 69 2.72e-21 91.3
Msa0380780 AT5G51870.2 46.602 103 52 2 1 103 1 100 3.00e-21 89.4
Msa0380780 AT2G45660.2 57.746 71 29 1 1 71 1 70 3.41e-21 88.6
Msa0380780 AT1G26310.1 35.465 172 87 2 1 172 1 148 3.52e-21 91.3
Msa0380780 AT3G58780.2 65.574 61 21 0 1 61 16 76 4.46e-21 90.5
Msa0380780 AT5G10140.2 60.000 70 28 0 1 70 1 70 4.93e-21 88.6
Msa0380780 AT3G57230.1 60.000 70 27 1 1 70 1 69 5.25e-21 90.5
Msa0380780 AT3G57230.4 60.000 70 27 1 1 70 1 69 5.25e-21 90.5
Msa0380780 AT5G62165.10 42.336 137 62 4 1 132 1 125 5.59e-21 89.4
Msa0380780 AT5G62165.4 42.336 137 62 4 1 132 1 125 5.59e-21 89.4
Msa0380780 AT5G10140.4 60.000 70 28 0 1 70 1 70 5.74e-21 89.0
Msa0380780 AT2G45660.1 32.759 174 90 3 1 174 1 147 5.96e-21 89.7
Msa0380780 AT1G24260.3 60.000 70 28 0 1 70 1 70 6.07e-21 90.1
Msa0380780 AT5G62165.3 42.336 137 62 4 1 132 1 125 6.44e-21 89.4
Msa0380780 AT5G62165.1 42.336 137 62 4 1 132 1 125 6.44e-21 89.4
Msa0380780 AT5G62165.2 42.336 137 62 4 1 132 1 125 6.44e-21 89.4
Msa0380780 AT5G10140.3 60.000 70 28 0 1 70 1 70 6.57e-21 89.0
Msa0380780 AT4G24540.1 43.750 128 61 4 1 119 1 126 6.62e-21 89.7
Msa0380780 AT5G10140.1 60.000 70 28 0 1 70 1 70 7.00e-21 89.0
Msa0380780 AT5G51870.1 46.602 103 52 2 1 103 1 100 7.19e-21 89.4
Msa0380780 AT5G51870.5 46.602 103 52 2 1 103 24 123 7.35e-21 89.0
Msa0380780 AT1G24260.1 60.000 70 28 0 1 70 1 70 7.67e-21 90.1
Msa0380780 AT1G24260.2 60.000 70 28 0 1 70 1 70 8.38e-21 90.1
Msa0380780 AT5G51870.4 46.602 103 52 2 1 103 1 100 1.35e-20 89.0
Msa0380780 AT5G51870.3 46.602 103 52 2 1 103 11 110 1.77e-20 88.6
Msa0380780 AT3G02310.2 58.571 70 29 0 1 70 1 70 2.28e-20 87.8
Msa0380780 AT3G61120.1 44.660 103 54 2 1 101 1 102 2.85e-20 88.6
Msa0380780 AT4G22950.2 60.000 70 27 1 1 70 1 69 3.02e-20 86.7
Msa0380780 AT3G02310.1 34.595 185 87 3 1 180 1 156 4.26e-20 88.2
Msa0380780 AT2G22540.3 30.400 250 140 11 1 229 1 237 5.32e-20 87.8
Msa0380780 AT2G22540.1 30.400 250 140 11 1 229 1 237 5.32e-20 87.8
Msa0380780 AT5G15800.1 57.143 70 30 0 1 70 1 70 5.52e-20 87.8
Msa0380780 AT5G15800.2 57.143 70 30 0 1 70 1 70 7.02e-20 87.8
Msa0380780 AT5G23260.3 47.115 104 45 3 1 98 1 100 8.06e-20 87.0
Msa0380780 AT5G23260.2 47.115 104 45 3 1 98 1 100 9.77e-20 87.0
Msa0380780 AT5G23260.1 47.115 104 45 3 1 98 17 116 1.35e-19 87.0
Msa0380780 AT4G22950.3 60.000 70 27 1 1 70 1 69 1.36e-19 85.9
Msa0380780 AT4G22950.1 60.000 70 27 1 1 70 1 69 1.36e-19 85.9
Msa0380780 AT5G23260.4 47.115 104 45 3 1 98 17 116 1.40e-19 87.0
Msa0380780 AT5G65070.4 55.714 70 31 0 1 70 1 70 1.85e-19 83.6
Msa0380780 AT4G37940.4 31.844 179 94 3 1 179 1 151 2.00e-19 85.5
Msa0380780 AT5G13790.2 51.807 83 39 1 1 83 1 82 2.98e-19 86.3
Msa0380780 AT5G65070.1 55.714 70 31 0 1 70 1 70 4.13e-19 84.3
Msa0380780 AT2G22540.2 39.844 128 61 4 1 119 1 121 5.43e-19 84.7
Msa0380780 AT1G71692.1 46.835 79 42 0 1 79 1 79 5.67e-19 84.3
Msa0380780 AT5G13790.1 56.944 72 30 1 1 72 1 71 6.83e-19 85.1
Msa0380780 AT5G65070.5 55.714 70 31 0 1 70 1 70 9.21e-19 83.6
Msa0380780 AT5G65070.2 55.714 70 31 0 1 70 1 70 1.05e-18 84.0
Msa0380780 AT4G37940.3 32.544 169 86 3 1 169 1 141 1.35e-18 82.0
Msa0380780 AT4G37940.1 32.558 172 88 3 1 172 1 144 1.41e-18 83.6
Msa0380780 AT2G03710.3 63.158 57 21 0 1 57 1 57 1.49e-18 82.4
Msa0380780 AT2G03710.2 63.158 57 21 0 1 57 1 57 3.77e-18 82.8
Msa0380780 AT2G03710.1 63.158 57 21 0 1 57 1 57 3.86e-18 82.8
Msa0380780 AT2G14210.1 34.884 172 85 2 1 172 1 145 4.51e-18 82.0
Msa0380780 AT2G14210.2 34.884 172 85 2 1 172 1 145 5.61e-18 82.0
Msa0380780 AT5G51860.2 57.143 70 29 1 1 70 1 69 8.72e-18 80.5
Msa0380780 AT5G51860.1 57.143 70 29 1 1 70 1 69 1.00e-17 80.9
Msa0380780 AT5G65070.3 57.576 66 27 1 1 65 1 66 6.00e-17 79.0
Msa0380780 AT5G20240.2 64.151 53 19 0 1 53 1 53 6.44e-17 77.0
Msa0380780 AT5G65050.2 48.571 70 36 0 1 70 1 70 7.32e-17 77.4
Msa0380780 AT2G34440.1 36.538 104 64 2 1 103 1 103 1.38e-16 76.6
Msa0380780 AT2G26320.1 48.101 79 40 1 1 78 17 95 1.57e-16 74.7
Msa0380780 AT5G20240.1 64.151 53 19 0 1 53 1 53 1.64e-16 77.4
Msa0380780 AT5G65050.3 48.571 70 36 0 1 70 1 70 2.62e-16 76.6
Msa0380780 AT5G65050.1 48.571 70 36 0 1 70 1 70 2.83e-16 75.9
Msa0380780 AT5G65050.5 48.571 70 36 0 1 70 1 70 2.92e-16 75.9
Msa0380780 AT1G31140.1 57.746 71 29 1 1 70 1 71 4.67e-16 76.3
Msa0380780 AT1G31140.2 57.746 71 29 1 1 70 1 71 4.94e-16 76.3
Msa0380780 AT2G22630.1 52.857 70 32 1 1 70 1 69 1.24e-15 75.1
Msa0380780 AT2G22630.2 52.857 70 32 1 1 70 1 69 1.24e-15 75.1
Msa0380780 AT5G60440.1 28.000 275 162 10 2 272 7 249 1.36e-15 76.3
Msa0380780 AT2G24840.1 48.611 72 36 1 1 72 62 132 2.28e-15 75.1
Msa0380780 AT5G65060.3 47.143 70 37 0 1 70 1 70 4.36e-15 72.8
Msa0380780 AT5G65060.2 47.143 70 37 0 1 70 1 70 4.50e-15 72.8
Msa0380780 AT5G65060.1 47.143 70 37 0 1 70 1 70 5.04e-15 72.8
Msa0380780 AT4G36590.1 46.988 83 42 2 2 84 7 87 6.32e-15 73.6
Msa0380780 AT3G66656.1 45.833 72 38 1 1 72 1 71 1.37e-14 71.2
Msa0380780 AT1G01530.1 28.426 197 112 7 1 189 6 181 1.65e-14 72.4
Msa0380780 AT5G65080.3 36.607 112 60 2 1 101 8 119 2.31e-14 70.9
Msa0380780 AT1G77080.11 52.857 70 33 0 1 70 1 70 9.11e-14 68.9
Msa0380780 AT1G77080.5 52.857 70 33 0 1 70 1 70 1.13e-13 68.6
Msa0380780 AT1G77080.4 52.857 70 33 0 1 70 1 70 1.98e-13 68.6
Msa0380780 AT1G77080.8 52.857 70 33 0 1 70 1 70 3.92e-13 68.2
Msa0380780 AT5G65080.2 36.937 111 60 2 1 101 8 118 1.09e-12 66.6
Msa0380780 AT1G28460.1 47.887 71 36 1 2 72 8 77 1.42e-12 65.9
Msa0380780 AT1G72350.1 48.571 70 33 1 2 71 43 109 2.76e-12 65.9
Msa0380780 AT1G65360.1 42.857 70 39 1 1 70 6 74 3.35e-12 65.5
Msa0380780 AT1G77080.12 70.000 40 12 0 1 40 1 40 5.73e-12 63.2
Msa0380780 AT1G77080.2 70.000 40 12 0 1 40 1 40 1.10e-11 63.5
Msa0380780 AT1G29962.1 43.662 71 39 1 2 72 8 77 1.60e-11 62.8
Msa0380780 AT1G47760.1 38.889 90 52 2 1 88 1 89 6.45e-11 60.8
Msa0380780 AT1G28450.1 28.070 171 115 5 2 168 8 174 8.61e-11 60.8

Find 63 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGATTTATATATCGTTCT+AGG 0.235542 3_1:+82743826 None:intergenic
TACTCAGTTTGGACAGGTTA+TGG 0.296881 3_1:-82742265 Msa0380780:CDS
TGGGAGCACCTCCATCAATT+AGG 0.354954 3_1:-82742225 Msa0380780:intron
TGGATACCAATTTGTCCTCT+TGG 0.364028 3_1:-82742245 Msa0380780:CDS
GGAACTACAGAGAATGTATT+AGG 0.368902 3_1:-82742579 Msa0380780:CDS
TACCTTCCACGTTCACTGTC+TGG 0.381164 3_1:+82743804 None:intergenic
GTCAGCCTCTGCAGCATCCC+TGG 0.382937 3_1:+82742305 None:intergenic
TCAACTTTCTAAGCACCTTT+CGG 0.388464 3_1:+82743336 None:intergenic
GTGCTCCCAAGAGGACAAAT+TGG 0.392637 3_1:+82742239 None:intergenic
ACTGAGTACTGTTGTTGATA+TGG 0.393694 3_1:-82742388 Msa0380780:CDS
GGATACCAATTTGTCCTCTT+GGG 0.396151 3_1:-82742244 Msa0380780:CDS
TGTATTAGGTTGGTTTCCTC+AGG 0.402453 3_1:-82742565 Msa0380780:CDS
TATTAACAAATACCTTTAGT+TGG 0.408282 3_1:+82743134 None:intergenic
ATTTATTTGCAAGTCTCAAT+TGG 0.411776 3_1:-82743003 Msa0380780:CDS
TCAAGTAAGTACCTAATTGA+TGG 0.427316 3_1:+82742214 None:intergenic
AATGCGCTAAGTACTCAGTT+TGG 0.449112 3_1:-82742276 Msa0380780:CDS
GATGTAGATGGATTTGTTGC+TGG 0.452248 3_1:-82742600 Msa0380780:CDS
TGTTTGAAGTTGACCATGAT+TGG 0.468690 3_1:+82741884 None:intergenic
AAAGTTCAGAATCTGATCAT+TGG 0.482587 3_1:+82742536 None:intergenic
CAAGTCTCAATTGGAAGAGA+TGG 0.484876 3_1:-82742994 Msa0380780:CDS
AATATCTTCATAACCAATCA+TGG 0.488832 3_1:-82741897 Msa0380780:CDS
CGACGTTTGCAGAGTTCAGA+AGG 0.490783 3_1:+82742349 None:intergenic
CTTACCACCCTTCTCCTCTC+AGG 0.492758 3_1:-82742506 Msa0380780:intron
CTTGTCTCTGCAACTGACAA+TGG 0.498020 3_1:+82741966 None:intergenic
TTGGTTATGAAGATATTTGA+CGG 0.516471 3_1:+82741903 None:intergenic
AAGAGAGTGGCTCTCCCAGA+TGG 0.518657 3_1:+82743980 None:intergenic
AGTTGGAAGTCTGTAATCGT+AGG 0.521006 3_1:+82743151 None:intergenic
ACTTTCTCAAAGAGAAGGAA+TGG 0.522232 3_1:-82744070 Msa0380780:CDS
ACACTTGTCAAATTTGTCCC+AGG 0.527598 3_1:-82742323 Msa0380780:CDS
CTACAGAGAATGTATTAGGT+TGG 0.528198 3_1:-82742575 Msa0380780:CDS
GTTCTATGTGATGTTGATGT+CGG 0.532669 3_1:-82744019 Msa0380780:CDS
ATCAGATATGCCAAGCTCCT+AGG 0.535164 3_1:-82743301 Msa0380780:intron
AAGAGATGGAGAATCGACTA+AGG 0.538298 3_1:-82742980 Msa0380780:intron
TGAGAACATAACAAATAGAC+AGG 0.539051 3_1:-82744095 Msa0380780:CDS
ATATCGTGAACAAGTCCTAC+AGG 0.539458 3_1:-82742777 Msa0380780:CDS
GTTGGAAGTCTGTAATCGTA+GGG 0.550926 3_1:+82743152 None:intergenic
CACAATGTGGTAATCTCTGA+AGG 0.551793 3_1:+82742809 None:intergenic
AGGAGAAGGGTGGTAAGCAT+TGG 0.553311 3_1:+82742512 None:intergenic
TCAGCCTCTGCAGCATCCCT+GGG 0.556037 3_1:+82742306 None:intergenic
CACTTGTCAAATTTGTCCCA+GGG 0.556255 3_1:-82742322 Msa0380780:CDS
GCTAAGTACTCAGTTTGGAC+AGG 0.568958 3_1:-82742271 Msa0380780:CDS
GTGGAAAATACCTAGGAGCT+TGG 0.572359 3_1:+82743291 None:intergenic
TTGTCCCAGGGATGCTGCAG+AGG 0.578615 3_1:-82742310 Msa0380780:CDS
TCAGTTGCAGAGACAAGAGA+AGG 0.586488 3_1:-82741960 Msa0380780:CDS
GAGTTCAGAAGGGTCGAAGT+TGG 0.589393 3_1:+82742360 None:intergenic
AGGTCACTTTCTCAAAGAGA+AGG 0.595218 3_1:-82744075 Msa0380780:CDS
GATTACAGACTTCCAACTAA+AGG 0.598201 3_1:-82743146 Msa0380780:intron
GTATTAGGTTGGTTTCCTCA+GGG 0.607496 3_1:-82742564 Msa0380780:CDS
TTCCAGACAGTGAACGTGGA+AGG 0.612412 3_1:-82743806 Msa0380780:intron
ATGAAGGATGCATAATCAAG+AGG 0.614891 3_1:-82743457 Msa0380780:intron
AGAGATTACCACATTGTGCG+AGG 0.621330 3_1:-82742804 Msa0380780:CDS
CAGTTGCAGAGACAAGAGAA+GGG 0.631630 3_1:-82741959 Msa0380780:CDS
AAAAGTACCTGAGAGGAGAA+GGG 0.637245 3_1:+82742499 None:intergenic
GTCTCTGTAGCACATCCGAA+AGG 0.648532 3_1:-82743351 Msa0380780:intron
AATCTTCCAGACAGTGAACG+TGG 0.648566 3_1:-82743810 Msa0380780:CDS
GACGTTTGCAGAGTTCAGAA+GGG 0.664429 3_1:+82742350 None:intergenic
AGTAAGTACCTAATTGATGG+AGG 0.665939 3_1:+82742217 None:intergenic
TTGATGGAGGTGCTCCCAAG+AGG 0.668389 3_1:+82742230 None:intergenic
TCTATTGCCAGAAAAGAGAG+TGG 0.678462 3_1:+82743967 None:intergenic
GATTACCACATTGTGCGAGG+CGG 0.687602 3_1:-82742801 Msa0380780:CDS
ATATTCCGCCTCGCACAATG+TGG 0.688829 3_1:+82742796 None:intergenic
TGATCATTGGTATCTCCCTG+AGG 0.724655 3_1:+82742549 None:intergenic
AGTACCTGAGAGGAGAAGGG+TGG 0.732351 3_1:+82742502 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATTAATATATACCATA+AGG - chr3_1:82742757-82742776 Msa0380780:CDS 10.0%
!! ATTAATTAATATATACCATA+AGG - chr3_1:82742757-82742776 Msa0380780:CDS 10.0%
!! TTGAATCTACTAATAATAAT+TGG - chr3_1:82742786-82742805 Msa0380780:CDS 15.0%
!! TCAAATAATGTTATATATGT+TGG - chr3_1:82742940-82742959 Msa0380780:intron 15.0%
!!! TTTTTCATGCTATAATTTTT+AGG - chr3_1:82743161-82743180 Msa0380780:intron 15.0%
!!! ATAATTTTTAGGATATTTGA+AGG - chr3_1:82743172-82743191 Msa0380780:intron 15.0%
!! AATTTGTATCAAATTGTTTA+TGG - chr3_1:82743567-82743586 Msa0380780:intron 15.0%
!!! CTGAAAATTTACTTTTTATT+TGG - chr3_1:82743887-82743906 Msa0380780:intron 15.0%
!! TTGAATCTACTAATAATAAT+TGG - chr3_1:82742786-82742805 Msa0380780:CDS 15.0%
!! TCAAATAATGTTATATATGT+TGG - chr3_1:82742940-82742959 Msa0380780:intron 15.0%
!!! TTTTTCATGCTATAATTTTT+AGG - chr3_1:82743161-82743180 Msa0380780:intron 15.0%
!!! ATAATTTTTAGGATATTTGA+AGG - chr3_1:82743172-82743191 Msa0380780:intron 15.0%
!! AATTTGTATCAAATTGTTTA+TGG - chr3_1:82743567-82743586 Msa0380780:intron 15.0%
!!! CTGAAAATTTACTTTTTATT+TGG - chr3_1:82743887-82743906 Msa0380780:intron 15.0%
!!! GAAAGTTCAAATTTTAAGAT+CGG + chr3_1:82742359-82742378 None:intergenic 20.0%
!!! ATCAATTTTCAAATGTTCTT+GGG - chr3_1:82742604-82742623 Msa0380780:CDS 20.0%
!! TATTAACAAATACCTTTAGT+TGG + chr3_1:82742877-82742896 None:intergenic 20.0%
!!! GAAAGTTCAAATTTTAAGAT+CGG + chr3_1:82742359-82742378 None:intergenic 20.0%
!!! ATCAATTTTCAAATGTTCTT+GGG - chr3_1:82742604-82742623 Msa0380780:CDS 20.0%
!! TATTAACAAATACCTTTAGT+TGG + chr3_1:82742877-82742896 None:intergenic 20.0%
! GAAGATTTATATATCGTTCT+AGG + chr3_1:82742185-82742204 None:intergenic 25.0%
! GAACATATGAAATACGAATT+TGG + chr3_1:82742441-82742460 None:intergenic 25.0%
!! TTCCTATTTTATCCTAATGT+TGG - chr3_1:82742487-82742506 Msa0380780:intron 25.0%
!! CATCAATTTTCAAATGTTCT+TGG - chr3_1:82742603-82742622 Msa0380780:CDS 25.0%
! TAGATTCAATTCAAACCTTA+TGG + chr3_1:82742775-82742794 None:intergenic 25.0%
!!! TAATAATAATTGGCTTGTAG+AGG - chr3_1:82742796-82742815 Msa0380780:CDS 25.0%
! AATAAATCTATGTGAACTTC+AGG - chr3_1:82742966-82742985 Msa0380780:intron 25.0%
! ATTTATTTGCAAGTCTCAAT+TGG - chr3_1:82743005-82743024 Msa0380780:CDS 25.0%
! AGAAGTTAAGCAATGATAAA+GGG + chr3_1:82743061-82743080 None:intergenic 25.0%
! TAGAAGTTAAGCAATGATAA+AGG + chr3_1:82743062-82743081 None:intergenic 25.0%
! TCTTTATCGTAGCTAATTAT+TGG - chr3_1:82743326-82743345 Msa0380780:CDS 25.0%
! TTGGTTATGAAGATATTTGA+CGG + chr3_1:82744108-82744127 None:intergenic 25.0%
! AATATCTTCATAACCAATCA+TGG - chr3_1:82744111-82744130 Msa0380780:CDS 25.0%
! GAAGATTTATATATCGTTCT+AGG + chr3_1:82742185-82742204 None:intergenic 25.0%
! GAACATATGAAATACGAATT+TGG + chr3_1:82742441-82742460 None:intergenic 25.0%
!! TTCCTATTTTATCCTAATGT+TGG - chr3_1:82742487-82742506 Msa0380780:intron 25.0%
!! CATCAATTTTCAAATGTTCT+TGG - chr3_1:82742603-82742622 Msa0380780:CDS 25.0%
! TAGATTCAATTCAAACCTTA+TGG + chr3_1:82742775-82742794 None:intergenic 25.0%
!!! TAATAATAATTGGCTTGTAG+AGG - chr3_1:82742796-82742815 Msa0380780:CDS 25.0%
! AATAAATCTATGTGAACTTC+AGG - chr3_1:82742966-82742985 Msa0380780:intron 25.0%
! ATTTATTTGCAAGTCTCAAT+TGG - chr3_1:82743005-82743024 Msa0380780:CDS 25.0%
! AGAAGTTAAGCAATGATAAA+GGG + chr3_1:82743061-82743080 None:intergenic 25.0%
! TAGAAGTTAAGCAATGATAA+AGG + chr3_1:82743062-82743081 None:intergenic 25.0%
! TCTTTATCGTAGCTAATTAT+TGG - chr3_1:82743326-82743345 Msa0380780:CDS 25.0%
! TTGGTTATGAAGATATTTGA+CGG + chr3_1:82744108-82744127 None:intergenic 25.0%
! AATATCTTCATAACCAATCA+TGG - chr3_1:82744111-82744130 Msa0380780:CDS 25.0%
TGAGAACATAACAAATAGAC+AGG - chr3_1:82741913-82741932 Msa0380780:CDS 30.0%
AAGATTTGATCGAGATCAAA+CGG - chr3_1:82742303-82742322 Msa0380780:CDS 30.0%
AAGTATCAAGTATGAAGTAC+TGG + chr3_1:82742469-82742488 None:intergenic 30.0%
CACCAACATTAGGATAAAAT+AGG + chr3_1:82742492-82742511 None:intergenic 30.0%
! CTATTTTATCCTAATGTTGG+TGG - chr3_1:82742490-82742509 Msa0380780:intron 30.0%
ATCAAACTAAAAATGAGCTG+TGG + chr3_1:82742739-82742758 None:intergenic 30.0%
ACAAAAACTGTAGATGTAGA+TGG - chr3_1:82743396-82743415 Msa0380780:intron 30.0%
AAAGTTCAGAATCTGATCAT+TGG + chr3_1:82743475-82743494 None:intergenic 30.0%
ACTGGACAATTGAAAATCAA+TGG + chr3_1:82743540-82743559 None:intergenic 30.0%
TGATACAAATTCACTTGAAC+TGG + chr3_1:82743558-82743577 None:intergenic 30.0%
TCAAGTAAGTACCTAATTGA+TGG + chr3_1:82743797-82743816 None:intergenic 30.0%
!! CTTGATTTGATAATGCACAT+TGG - chr3_1:82743849-82743868 Msa0380780:intron 30.0%
TGAGAACATAACAAATAGAC+AGG - chr3_1:82741913-82741932 Msa0380780:CDS 30.0%
AAGATTTGATCGAGATCAAA+CGG - chr3_1:82742303-82742322 Msa0380780:CDS 30.0%
AAGTATCAAGTATGAAGTAC+TGG + chr3_1:82742469-82742488 None:intergenic 30.0%
CACCAACATTAGGATAAAAT+AGG + chr3_1:82742492-82742511 None:intergenic 30.0%
! CTATTTTATCCTAATGTTGG+TGG - chr3_1:82742490-82742509 Msa0380780:intron 30.0%
ATCAAACTAAAAATGAGCTG+TGG + chr3_1:82742739-82742758 None:intergenic 30.0%
ACAAAAACTGTAGATGTAGA+TGG - chr3_1:82743396-82743415 Msa0380780:intron 30.0%
AAAGTTCAGAATCTGATCAT+TGG + chr3_1:82743475-82743494 None:intergenic 30.0%
ACTGGACAATTGAAAATCAA+TGG + chr3_1:82743540-82743559 None:intergenic 30.0%
TGATACAAATTCACTTGAAC+TGG + chr3_1:82743558-82743577 None:intergenic 30.0%
TCAAGTAAGTACCTAATTGA+TGG + chr3_1:82743797-82743816 None:intergenic 30.0%
!! CTTGATTTGATAATGCACAT+TGG - chr3_1:82743849-82743868 Msa0380780:intron 30.0%
ACTTTCTCAAAGAGAAGGAA+TGG - chr3_1:82741938-82741957 Msa0380780:CDS 35.0%
GTTCTATGTGATGTTGATGT+CGG - chr3_1:82741989-82742008 Msa0380780:intron 35.0%
! TCATCATGTTTTCTCCATCT+GGG - chr3_1:82742014-82742033 Msa0380780:intron 35.0%
!! TTTTCTGGCAATAGAAGGTT+TGG - chr3_1:82742049-82742068 Msa0380780:intron 35.0%
TCGCAACAAATCCAAATCTA+GGG + chr3_1:82742237-82742256 None:intergenic 35.0%
GACAATTTCACACATTCACA+CGG - chr3_1:82742255-82742274 Msa0380780:CDS 35.0%
TCAAAGATACCACCAACATT+AGG + chr3_1:82742502-82742521 None:intergenic 35.0%
TTGTTACCGTGCAATTATGA+AGG - chr3_1:82742535-82742554 Msa0380780:CDS 35.0%
ATGCATCCTTCATAATTGCA+CGG + chr3_1:82742544-82742563 None:intergenic 35.0%
ATGAAGGATGCATAATCAAG+AGG - chr3_1:82742551-82742570 Msa0380780:CDS 35.0%
TCAACTTTCTAAGCACCTTT+CGG + chr3_1:82742675-82742694 None:intergenic 35.0%
GGCTGCAACAACATAATTAA+AGG + chr3_1:82742838-82742857 None:intergenic 35.0%
GATTACAGACTTCCAACTAA+AGG - chr3_1:82742862-82742881 Msa0380780:intron 35.0%
AAATCTATGTGAACTTCAGG+AGG - chr3_1:82742969-82742988 Msa0380780:intron 35.0%
!! AACATCTCAGAATCTGGTTT+TGG + chr3_1:82743115-82743134 None:intergenic 35.0%
!! CTTTAGAACATCTCAGAATC+TGG + chr3_1:82743121-82743140 None:intergenic 35.0%
!! CAGATTCTGAGATGTTCTAA+AGG - chr3_1:82743119-82743138 Msa0380780:intron 35.0%
!!! CTTGTTTTAGAGTTTCCTGT+AGG + chr3_1:82743249-82743268 None:intergenic 35.0%
GGAACTACAGAGAATGTATT+AGG - chr3_1:82743429-82743448 Msa0380780:intron 35.0%
CTACAGAGAATGTATTAGGT+TGG - chr3_1:82743433-82743452 Msa0380780:intron 35.0%
! ACTGAGTACTGTTGTTGATA+TGG - chr3_1:82743620-82743639 Msa0380780:intron 35.0%
AGTAAGTACCTAATTGATGG+AGG + chr3_1:82743794-82743813 None:intergenic 35.0%
! TTTTAGCCCAAGCTTAGTTT+TGG - chr3_1:82743960-82743979 Msa0380780:intron 35.0%
ATGACTCCAAAACTAAGCTT+GGG + chr3_1:82743969-82743988 None:intergenic 35.0%
AATGACTCCAAAACTAAGCT+TGG + chr3_1:82743970-82743989 None:intergenic 35.0%
TTTGAACTATTTGCAGAGAG+AGG - chr3_1:82744018-82744037 Msa0380780:CDS 35.0%
! TGTTTGAAGTTGACCATGAT+TGG + chr3_1:82744127-82744146 None:intergenic 35.0%
ACTTTCTCAAAGAGAAGGAA+TGG - chr3_1:82741938-82741957 Msa0380780:CDS 35.0%
GTTCTATGTGATGTTGATGT+CGG - chr3_1:82741989-82742008 Msa0380780:intron 35.0%
! TCATCATGTTTTCTCCATCT+GGG - chr3_1:82742014-82742033 Msa0380780:intron 35.0%
!! TTTTCTGGCAATAGAAGGTT+TGG - chr3_1:82742049-82742068 Msa0380780:intron 35.0%
TCGCAACAAATCCAAATCTA+GGG + chr3_1:82742237-82742256 None:intergenic 35.0%
GACAATTTCACACATTCACA+CGG - chr3_1:82742255-82742274 Msa0380780:CDS 35.0%
TCAAAGATACCACCAACATT+AGG + chr3_1:82742502-82742521 None:intergenic 35.0%
TTGTTACCGTGCAATTATGA+AGG - chr3_1:82742535-82742554 Msa0380780:CDS 35.0%
ATGCATCCTTCATAATTGCA+CGG + chr3_1:82742544-82742563 None:intergenic 35.0%
ATGAAGGATGCATAATCAAG+AGG - chr3_1:82742551-82742570 Msa0380780:CDS 35.0%
TCAACTTTCTAAGCACCTTT+CGG + chr3_1:82742675-82742694 None:intergenic 35.0%
GGCTGCAACAACATAATTAA+AGG + chr3_1:82742838-82742857 None:intergenic 35.0%
GATTACAGACTTCCAACTAA+AGG - chr3_1:82742862-82742881 Msa0380780:intron 35.0%
AAATCTATGTGAACTTCAGG+AGG - chr3_1:82742969-82742988 Msa0380780:intron 35.0%
!! AACATCTCAGAATCTGGTTT+TGG + chr3_1:82743115-82743134 None:intergenic 35.0%
!! CTTTAGAACATCTCAGAATC+TGG + chr3_1:82743121-82743140 None:intergenic 35.0%
!! CAGATTCTGAGATGTTCTAA+AGG - chr3_1:82743119-82743138 Msa0380780:intron 35.0%
!!! CTTGTTTTAGAGTTTCCTGT+AGG + chr3_1:82743249-82743268 None:intergenic 35.0%
GGAACTACAGAGAATGTATT+AGG - chr3_1:82743429-82743448 Msa0380780:intron 35.0%
CTACAGAGAATGTATTAGGT+TGG - chr3_1:82743433-82743452 Msa0380780:intron 35.0%
! ACTGAGTACTGTTGTTGATA+TGG - chr3_1:82743620-82743639 Msa0380780:intron 35.0%
AGTAAGTACCTAATTGATGG+AGG + chr3_1:82743794-82743813 None:intergenic 35.0%
! TTTTAGCCCAAGCTTAGTTT+TGG - chr3_1:82743960-82743979 Msa0380780:intron 35.0%
ATGACTCCAAAACTAAGCTT+GGG + chr3_1:82743969-82743988 None:intergenic 35.0%
AATGACTCCAAAACTAAGCT+TGG + chr3_1:82743970-82743989 None:intergenic 35.0%
TTTGAACTATTTGCAGAGAG+AGG - chr3_1:82744018-82744037 Msa0380780:CDS 35.0%
! TGTTTGAAGTTGACCATGAT+TGG + chr3_1:82744127-82744146 None:intergenic 35.0%
! AGGTCACTTTCTCAAAGAGA+AGG - chr3_1:82741933-82741952 Msa0380780:CDS 40.0%
! CTCATCATGTTTTCTCCATC+TGG - chr3_1:82742013-82742032 Msa0380780:intron 40.0%
TCTATTGCCAGAAAAGAGAG+TGG + chr3_1:82742044-82742063 None:intergenic 40.0%
!! CTCTCTTTTCTGGCAATAGA+AGG - chr3_1:82742044-82742063 Msa0380780:intron 40.0%
GGTAAGTGATTCCCTAGATT+TGG - chr3_1:82742223-82742242 Msa0380780:intron 40.0%
GTCGCAACAAATCCAAATCT+AGG + chr3_1:82742238-82742257 None:intergenic 40.0%
AATTCACGCACTCAACATGT+CGG + chr3_1:82742402-82742421 None:intergenic 40.0%
ATGAGCTGTGGAAAATACCT+AGG + chr3_1:82742727-82742746 None:intergenic 40.0%
GTTGGAAGTCTGTAATCGTA+GGG + chr3_1:82742859-82742878 None:intergenic 40.0%
AGTTGGAAGTCTGTAATCGT+AGG + chr3_1:82742860-82742879 None:intergenic 40.0%
CAAGTCTCAATTGGAAGAGA+TGG - chr3_1:82743014-82743033 Msa0380780:CDS 40.0%
AAGAGATGGAGAATCGACTA+AGG - chr3_1:82743028-82743047 Msa0380780:intron 40.0%
CACAATGTGGTAATCTCTGA+AGG + chr3_1:82743202-82743221 None:intergenic 40.0%
ATATCGTGAACAAGTCCTAC+AGG - chr3_1:82743231-82743250 Msa0380780:intron 40.0%
!! GATGTAGATGGATTTGTTGC+TGG - chr3_1:82743408-82743427 Msa0380780:intron 40.0%
!! TGTATTAGGTTGGTTTCCTC+AGG - chr3_1:82743443-82743462 Msa0380780:intron 40.0%
!! GTATTAGGTTGGTTTCCTCA+GGG - chr3_1:82743444-82743463 Msa0380780:intron 40.0%
!! AAAAGTACCTGAGAGGAGAA+GGG + chr3_1:82743512-82743531 None:intergenic 40.0%
!! AAAAAGTACCTGAGAGGAGA+AGG + chr3_1:82743513-82743532 None:intergenic 40.0%
!! GGCAATAAAAAGTACCTGAG+AGG + chr3_1:82743519-82743538 None:intergenic 40.0%
ACACTTGTCAAATTTGTCCC+AGG - chr3_1:82743685-82743704 Msa0380780:intron 40.0%
CACTTGTCAAATTTGTCCCA+GGG - chr3_1:82743686-82743705 Msa0380780:intron 40.0%
AATGCGCTAAGTACTCAGTT+TGG - chr3_1:82743732-82743751 Msa0380780:intron 40.0%
TACTCAGTTTGGACAGGTTA+TGG - chr3_1:82743743-82743762 Msa0380780:intron 40.0%
TGGATACCAATTTGTCCTCT+TGG - chr3_1:82743763-82743782 Msa0380780:intron 40.0%
GGATACCAATTTGTCCTCTT+GGG - chr3_1:82743764-82743783 Msa0380780:intron 40.0%
! AGGTCACTTTCTCAAAGAGA+AGG - chr3_1:82741933-82741952 Msa0380780:CDS 40.0%
! CTCATCATGTTTTCTCCATC+TGG - chr3_1:82742013-82742032 Msa0380780:intron 40.0%
TCTATTGCCAGAAAAGAGAG+TGG + chr3_1:82742044-82742063 None:intergenic 40.0%
!! CTCTCTTTTCTGGCAATAGA+AGG - chr3_1:82742044-82742063 Msa0380780:intron 40.0%
GGTAAGTGATTCCCTAGATT+TGG - chr3_1:82742223-82742242 Msa0380780:intron 40.0%
GTCGCAACAAATCCAAATCT+AGG + chr3_1:82742238-82742257 None:intergenic 40.0%
AATTCACGCACTCAACATGT+CGG + chr3_1:82742402-82742421 None:intergenic 40.0%
ATGAGCTGTGGAAAATACCT+AGG + chr3_1:82742727-82742746 None:intergenic 40.0%
GTTGGAAGTCTGTAATCGTA+GGG + chr3_1:82742859-82742878 None:intergenic 40.0%
AGTTGGAAGTCTGTAATCGT+AGG + chr3_1:82742860-82742879 None:intergenic 40.0%
CAAGTCTCAATTGGAAGAGA+TGG - chr3_1:82743014-82743033 Msa0380780:CDS 40.0%
AAGAGATGGAGAATCGACTA+AGG - chr3_1:82743028-82743047 Msa0380780:intron 40.0%
CACAATGTGGTAATCTCTGA+AGG + chr3_1:82743202-82743221 None:intergenic 40.0%
ATATCGTGAACAAGTCCTAC+AGG - chr3_1:82743231-82743250 Msa0380780:intron 40.0%
!! GATGTAGATGGATTTGTTGC+TGG - chr3_1:82743408-82743427 Msa0380780:intron 40.0%
!! TGTATTAGGTTGGTTTCCTC+AGG - chr3_1:82743443-82743462 Msa0380780:intron 40.0%
!! GTATTAGGTTGGTTTCCTCA+GGG - chr3_1:82743444-82743463 Msa0380780:intron 40.0%
!! AAAAGTACCTGAGAGGAGAA+GGG + chr3_1:82743512-82743531 None:intergenic 40.0%
!! AAAAAGTACCTGAGAGGAGA+AGG + chr3_1:82743513-82743532 None:intergenic 40.0%
!! GGCAATAAAAAGTACCTGAG+AGG + chr3_1:82743519-82743538 None:intergenic 40.0%
ACACTTGTCAAATTTGTCCC+AGG - chr3_1:82743685-82743704 Msa0380780:intron 40.0%
CACTTGTCAAATTTGTCCCA+GGG - chr3_1:82743686-82743705 Msa0380780:intron 40.0%
AATGCGCTAAGTACTCAGTT+TGG - chr3_1:82743732-82743751 Msa0380780:intron 40.0%
TACTCAGTTTGGACAGGTTA+TGG - chr3_1:82743743-82743762 Msa0380780:intron 40.0%
TGGATACCAATTTGTCCTCT+TGG - chr3_1:82743763-82743782 Msa0380780:intron 40.0%
GGATACCAATTTGTCCTCTT+GGG - chr3_1:82743764-82743783 Msa0380780:intron 40.0%
AATCTTCCAGACAGTGAACG+TGG - chr3_1:82742198-82742217 Msa0380780:intron 45.0%
GGTGGTTGTTGGATCAAGAT+CGG + chr3_1:82742381-82742400 None:intergenic 45.0%
ATCAGATATGCCAAGCTCCT+AGG - chr3_1:82742707-82742726 Msa0380780:intron 45.0%
GTGGAAAATACCTAGGAGCT+TGG + chr3_1:82742720-82742739 None:intergenic 45.0%
!! ATTGGCTTGTAGAGGCTTTC+TGG - chr3_1:82742804-82742823 Msa0380780:CDS 45.0%
AGAGATTACCACATTGTGCG+AGG - chr3_1:82743204-82743223 Msa0380780:intron 45.0%
TGATCATTGGTATCTCCCTG+AGG + chr3_1:82743462-82743481 None:intergenic 45.0%
GACGTTTGCAGAGTTCAGAA+GGG + chr3_1:82743661-82743680 None:intergenic 45.0%
GCTAAGTACTCAGTTTGGAC+AGG - chr3_1:82743737-82743756 Msa0380780:intron 45.0%
CTTGTCTCTGCAACTGACAA+TGG + chr3_1:82744045-82744064 None:intergenic 45.0%
TCAGTTGCAGAGACAAGAGA+AGG - chr3_1:82744048-82744067 Msa0380780:CDS 45.0%
CAGTTGCAGAGACAAGAGAA+GGG - chr3_1:82744049-82744068 Msa0380780:CDS 45.0%
AATCTTCCAGACAGTGAACG+TGG - chr3_1:82742198-82742217 Msa0380780:intron 45.0%
GGTGGTTGTTGGATCAAGAT+CGG + chr3_1:82742381-82742400 None:intergenic 45.0%
ATCAGATATGCCAAGCTCCT+AGG - chr3_1:82742707-82742726 Msa0380780:intron 45.0%
GTGGAAAATACCTAGGAGCT+TGG + chr3_1:82742720-82742739 None:intergenic 45.0%
!! ATTGGCTTGTAGAGGCTTTC+TGG - chr3_1:82742804-82742823 Msa0380780:CDS 45.0%
AGAGATTACCACATTGTGCG+AGG - chr3_1:82743204-82743223 Msa0380780:intron 45.0%
TGATCATTGGTATCTCCCTG+AGG + chr3_1:82743462-82743481 None:intergenic 45.0%
GACGTTTGCAGAGTTCAGAA+GGG + chr3_1:82743661-82743680 None:intergenic 45.0%
GCTAAGTACTCAGTTTGGAC+AGG - chr3_1:82743737-82743756 Msa0380780:intron 45.0%
CTTGTCTCTGCAACTGACAA+TGG + chr3_1:82744045-82744064 None:intergenic 45.0%
TCAGTTGCAGAGACAAGAGA+AGG - chr3_1:82744048-82744067 Msa0380780:CDS 45.0%
CAGTTGCAGAGACAAGAGAA+GGG - chr3_1:82744049-82744068 Msa0380780:CDS 45.0%
!! ATAAATTAATTATTATGATT+AGG - chr3_1:82743365-82743384 Msa0380780:intron 5.0%
!! ATAAATTAATTATTATGATT+AGG - chr3_1:82743365-82743384 Msa0380780:intron 5.0%
TTCCAGACAGTGAACGTGGA+AGG - chr3_1:82742202-82742221 Msa0380780:intron 50.0%
TACCTTCCACGTTCACTGTC+TGG + chr3_1:82742207-82742226 None:intergenic 50.0%
TCAAACAGCCAGCGATGTGA+TGG + chr3_1:82742281-82742300 None:intergenic 50.0%
CTCAACATGTCGGTGGTTGT+TGG + chr3_1:82742392-82742411 None:intergenic 50.0%
GTCTCTGTAGCACATCCGAA+AGG - chr3_1:82742657-82742676 Msa0380780:intron 50.0%
GATTACCACATTGTGCGAGG+CGG - chr3_1:82743207-82743226 Msa0380780:intron 50.0%
ATATTCCGCCTCGCACAATG+TGG + chr3_1:82743215-82743234 None:intergenic 50.0%
AGGAGAAGGGTGGTAAGCAT+TGG + chr3_1:82743499-82743518 None:intergenic 50.0%
GAGTTCAGAAGGGTCGAAGT+TGG + chr3_1:82743651-82743670 None:intergenic 50.0%
CGACGTTTGCAGAGTTCAGA+AGG + chr3_1:82743662-82743681 None:intergenic 50.0%
GTGCTCCCAAGAGGACAAAT+TGG + chr3_1:82743772-82743791 None:intergenic 50.0%
!! TGGGAGCACCTCCATCAATT+AGG - chr3_1:82743783-82743802 Msa0380780:intron 50.0%
TTCCAGACAGTGAACGTGGA+AGG - chr3_1:82742202-82742221 Msa0380780:intron 50.0%
TACCTTCCACGTTCACTGTC+TGG + chr3_1:82742207-82742226 None:intergenic 50.0%
TCAAACAGCCAGCGATGTGA+TGG + chr3_1:82742281-82742300 None:intergenic 50.0%
CTCAACATGTCGGTGGTTGT+TGG + chr3_1:82742392-82742411 None:intergenic 50.0%
GTCTCTGTAGCACATCCGAA+AGG - chr3_1:82742657-82742676 Msa0380780:intron 50.0%
GATTACCACATTGTGCGAGG+CGG - chr3_1:82743207-82743226 Msa0380780:intron 50.0%
ATATTCCGCCTCGCACAATG+TGG + chr3_1:82743215-82743234 None:intergenic 50.0%
AGGAGAAGGGTGGTAAGCAT+TGG + chr3_1:82743499-82743518 None:intergenic 50.0%
GAGTTCAGAAGGGTCGAAGT+TGG + chr3_1:82743651-82743670 None:intergenic 50.0%
CGACGTTTGCAGAGTTCAGA+AGG + chr3_1:82743662-82743681 None:intergenic 50.0%
GTGCTCCCAAGAGGACAAAT+TGG + chr3_1:82743772-82743791 None:intergenic 50.0%
!! TGGGAGCACCTCCATCAATT+AGG - chr3_1:82743783-82743802 Msa0380780:intron 50.0%
AAGAGAGTGGCTCTCCCAGA+TGG + chr3_1:82742031-82742050 None:intergenic 55.0%
! GGGAGAGCCACTCTCTTTTC+TGG - chr3_1:82742034-82742053 Msa0380780:intron 55.0%
TCACGCACTCAACATGTCGG+TGG + chr3_1:82742399-82742418 None:intergenic 55.0%
CTTACCACCCTTCTCCTCTC+AGG - chr3_1:82743502-82743521 Msa0380780:intron 55.0%
AGTACCTGAGAGGAGAAGGG+TGG + chr3_1:82743509-82743528 None:intergenic 55.0%
!! TTGATGGAGGTGCTCCCAAG+AGG + chr3_1:82743781-82743800 None:intergenic 55.0%
AAGAGAGTGGCTCTCCCAGA+TGG + chr3_1:82742031-82742050 None:intergenic 55.0%
! GGGAGAGCCACTCTCTTTTC+TGG - chr3_1:82742034-82742053 Msa0380780:intron 55.0%
TCACGCACTCAACATGTCGG+TGG + chr3_1:82742399-82742418 None:intergenic 55.0%
CTTACCACCCTTCTCCTCTC+AGG - chr3_1:82743502-82743521 Msa0380780:intron 55.0%
AGTACCTGAGAGGAGAAGGG+TGG + chr3_1:82743509-82743528 None:intergenic 55.0%
!! TTGATGGAGGTGCTCCCAAG+AGG + chr3_1:82743781-82743800 None:intergenic 55.0%
TCACACGGCCATCACATCGC+TGG - chr3_1:82742270-82742289 Msa0380780:CDS 60.0%
TTGTCCCAGGGATGCTGCAG+AGG - chr3_1:82743698-82743717 Msa0380780:intron 60.0%
TCAGCCTCTGCAGCATCCCT+GGG + chr3_1:82743705-82743724 None:intergenic 60.0%
TCACACGGCCATCACATCGC+TGG - chr3_1:82742270-82742289 Msa0380780:CDS 60.0%
TTGTCCCAGGGATGCTGCAG+AGG - chr3_1:82743698-82743717 Msa0380780:intron 60.0%
TCAGCCTCTGCAGCATCCCT+GGG + chr3_1:82743705-82743724 None:intergenic 60.0%
GTCAGCCTCTGCAGCATCCC+TGG + chr3_1:82743706-82743725 None:intergenic 65.0%
GTCAGCCTCTGCAGCATCCC+TGG + chr3_1:82743706-82743725 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 82741881 82744149 82741881 ID=Msa0380780;Name=Msa0380780
chr3_1 mRNA 82741881 82744149 82741881 ID=Msa0380780-mRNA-1;Parent=Msa0380780;Name=Msa0380780-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|10|0|318
chr3_1 exon 82743965 82744149 82743965 ID=Msa0380780-mRNA-1:exon:21139;Parent=Msa0380780-mRNA-1
chr3_1 exon 82743807 82743860 82743807 ID=Msa0380780-mRNA-1:exon:21138;Parent=Msa0380780-mRNA-1
chr3_1 exon 82743458 82743473 82743458 ID=Msa0380780-mRNA-1:exon:21137;Parent=Msa0380780-mRNA-1
chr3_1 exon 82743302 82743363 82743302 ID=Msa0380780-mRNA-1:exon:21136;Parent=Msa0380780-mRNA-1
chr3_1 exon 82743147 82743174 82743147 ID=Msa0380780-mRNA-1:exon:21135;Parent=Msa0380780-mRNA-1
chr3_1 exon 82742981 82743042 82742981 ID=Msa0380780-mRNA-1:exon:21134;Parent=Msa0380780-mRNA-1
chr3_1 exon 82742748 82742847 82742748 ID=Msa0380780-mRNA-1:exon:21133;Parent=Msa0380780-mRNA-1
chr3_1 exon 82742507 82742643 82742507 ID=Msa0380780-mRNA-1:exon:21132;Parent=Msa0380780-mRNA-1
chr3_1 exon 82742226 82742422 82742226 ID=Msa0380780-mRNA-1:exon:21131;Parent=Msa0380780-mRNA-1
chr3_1 exon 82741881 82741996 82741881 ID=Msa0380780-mRNA-1:exon:21130;Parent=Msa0380780-mRNA-1
chr3_1 CDS 82743965 82744149 82743965 ID=Msa0380780-mRNA-1:cds;Parent=Msa0380780-mRNA-1
chr3_1 CDS 82743807 82743860 82743807 ID=Msa0380780-mRNA-1:cds;Parent=Msa0380780-mRNA-1
chr3_1 CDS 82743458 82743473 82743458 ID=Msa0380780-mRNA-1:cds;Parent=Msa0380780-mRNA-1
chr3_1 CDS 82743302 82743363 82743302 ID=Msa0380780-mRNA-1:cds;Parent=Msa0380780-mRNA-1
chr3_1 CDS 82743147 82743174 82743147 ID=Msa0380780-mRNA-1:cds;Parent=Msa0380780-mRNA-1
chr3_1 CDS 82742981 82743042 82742981 ID=Msa0380780-mRNA-1:cds;Parent=Msa0380780-mRNA-1
chr3_1 CDS 82742748 82742847 82742748 ID=Msa0380780-mRNA-1:cds;Parent=Msa0380780-mRNA-1
chr3_1 CDS 82742507 82742643 82742507 ID=Msa0380780-mRNA-1:cds;Parent=Msa0380780-mRNA-1
chr3_1 CDS 82742226 82742422 82742226 ID=Msa0380780-mRNA-1:cds;Parent=Msa0380780-mRNA-1
chr3_1 CDS 82741881 82741996 82741881 ID=Msa0380780-mRNA-1:cds;Parent=Msa0380780-mRNA-1
Gene Sequence

>Msa0380780

ATGGGGAGAGTTAAGCTTCAGATCAAAAAGATTGAGAACATAACAAATAGACAGGTCACTTTCTCAAAGAGAAGGAATGGTTTAATCAAGAAAGCTTATGAACTTTCTGTTCTATGTGATGTTGATGTCGGTCTCATCATGTTTTCTCCATCTGGGAGAGCCACTCTCTTTTCTGGCAATAGAAGCATTGAAGAAATCCTAGAACGATATATAAATCTTCCAGACAGTGAACGTGGAAGGATGCATAATCAAGAGCACATCCGAAAGGTGCTTAGAAAGTTGAAAGCTGAAACTGATCAGATATGCCAAGCTCCTAGCCCTACGATTACAGACTTCCAACTAAAGGAGGTTCAAAGAGAAATATTTATTTGCAAGTCTCAATTGGAAGAGATGGAGAATCGACTAAGGATATTTGAAGGAGATCCTTCAGAGATTACCACATTGTGCGAGGCGGAATATCGTGAACAAGTCCTACAGGAAACTCTAAAACAAGTGCAACTGCGAAAAGTACATCTTACAAAAACTGTAGATGTAGATGGATTTGTTGCTGGAACTACAGAGAATGTATTAGGTTGGTTTCCTCAGGGAGATACCAATGATCAGATTCTGAACTTTGCCAATGCTTACCACCCTTCTCCTCTCAGTGATCAACAATCACTGAGTACTGTTGTTGATATGGTAACGCCAACTTCGACCCTTCTGAACTCTGCAAACGTCGATCACACTTGTCAAATTTGTCCCAGGGATGCTGCAGAGGCTGACATTAGTAATGCGCTAAGTACTCAGTTTGGACAGGTTATGGATACCAATTTGTCCTCTTGGGAGCACCTCCATCAATTAGAGAGAGGACCATTGTCAGTTGCAGAGACAAGAGAAGGGCAACTGCTTGAGCAGTATTTTTCTCAATTTAGTCCGTCAAATATCTTCATAACCAATCATGGTCAACTTCAAACATGA
Protein sequence

>Msa0380780

MGRVKLQIKKIENITNRQVTFSKRRNGLIKKAYELSVLCDVDVGLIMFSPSGRATLFSGNRSIEEILERYINLPDSERGRMHNQEHIRKVLRKLKAETDQICQAPSPTITDFQLKEVQREIFICKSQLEEMENRLRIFEGDPSEITTLCEAEYREQVLQETLKQVQLRKVHLTKTVDVDGFVAGTTENVLGWFPQGDTNDQILNFANAYHPSPLSDQQSLSTVVDMVTPTSTLLNSANVDHTCQICPRDAAEADISNALSTQFGQVMDTNLSSWEHLHQLERGPLSVAETREGQLLEQYFSQFSPSNIFITNHGQLQT*