AlfalfaGEDB | Msa0380790

M. sativa cultivar zhongmu-4 / Msa0380790

KEGG: K14491
GO: GO:0000156 GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009966 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048583 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141
PFAM: PF00072.27

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0380790	KEH35772.1	95.385	195	8	1	1	194	1	195	8.38e-121	350

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0380790	sp\|Q6H805\|ORR24_ORYSJ	54.167	240	56	2	6	191	23	262	5.02e-76	242

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0380790	A0A072V1R9	95.385	195	8	1	1	194	1	195	4.00e-121	350

TFs/TRs:

Gene ID	Type	Classification
Msa0380790	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0380790	MtrunA17_Chr3g0134461	95.385	195	8	1	1	194	1	195	7.71e-125	350
Msa0380790	MtrunA17_Chr3g0134481	71.649	194	45	1	1	194	1	184	3.74e-92	267
Msa0380790	MtrunA17_Chr1g0149841	52.301	239	62	2	5	191	2	240	6.00e-76	236
Msa0380790	MtrunA17_Chr7g0275401	48.333	240	71	1	5	191	2	241	2.71e-71	218
Msa0380790	MtrunA17_Chr7g0275891	46.825	252	69	4	5	191	2	253	4.23e-68	211
Msa0380790	MtrunA17_Chr4g0067981	48.954	239	72	2	3	191	26	264	6.00e-68	219
Msa0380790	MtrunA17_Chr2g0294911	46.809	235	77	2	5	191	26	260	1.01e-65	212
Msa0380790	MtrunA17_Chr1g0149851	46.063	254	70	3	5	191	2	255	1.02e-64	208
Msa0380790	MtrunA17_Chr1g0161431	46.091	243	76	2	4	191	7	249	3.92e-63	205
Msa0380790	MtrunA17_Chr3g0137101	74.627	134	34	0	1	134	1	134	4.87e-63	206
Msa0380790	MtrunA17_Chr3g0137101	81.356	59	11	0	133	191	189	247	9.66e-25	100
Msa0380790	MtrunA17_Chr4g0074411	46.025	239	80	1	2	191	12	250	5.11e-62	202
Msa0380790	MtrunA17_Chr4g0074401	46.610	236	74	1	8	191	17	252	1.92e-61	200
Msa0380790	MtrunA17_Chr3g0123131	44.492	236	79	2	8	191	13	248	6.60e-61	198
Msa0380790	MtrunA17_Chr8g0376881	45.339	236	79	2	6	191	23	258	1.46e-58	192
Msa0380790	MtrunA17_Chr2g0304841	64.122	131	47	0	2	132	12	142	8.60e-51	173
Msa0380790	MtrunA17_Chr2g0304841	68.519	54	17	0	138	191	209	262	3.70e-17	79.0
Msa0380790	MtrunA17_Chr4g0009851	40.187	214	102	3	3	191	6	218	7.11e-49	161
Msa0380790	MtrunA17_Chr4g0074421	46.961	181	49	1	58	191	2	182	3.69e-48	155
Msa0380790	MtrunA17_Chr1g0149831	46.893	177	39	3	67	191	1	174	6.84e-44	145
Msa0380790	MtrunA17_Chr4g0009901	37.321	209	105	3	8	191	10	217	7.67e-41	139
Msa0380790	MtrunA17_Chr6g0471041	33.491	212	115	3	7	193	13	223	4.82e-33	122
Msa0380790	MtrunA17_Chr4g0009981	36.585	164	79	2	53	191	2	165	6.63e-32	115
Msa0380790	MtrunA17_Chr8g0391911	29.832	238	113	6	8	193	9	244	2.85e-26	101
Msa0380790	MtrunA17_Chr8g0383961	35.811	148	92	2	1	145	7	154	7.56e-23	92.4
Msa0380790	MtrunA17_Chr4g0011071	32.374	139	69	2	55	168	36	174	4.45e-22	88.2
Msa0380790	MtrunA17_Chr6g0456631	33.594	128	82	2	5	130	6	132	2.04e-21	86.3
Msa0380790	MtrunA17_Chr5g0400241	39.200	125	70	3	8	130	14	134	1.28e-19	85.9
Msa0380790	MtrunA17_Chr5g0400241	52.632	57	27	0	135	191	304	360	2.32e-12	64.7
Msa0380790	MtrunA17_Chr4g0009991	37.815	119	50	2	100	194	1	119	1.35e-19	80.5
Msa0380790	MtrunA17_Chr7g0276361	32.450	151	96	3	1	145	1	151	5.46e-19	84.0
Msa0380790	MtrunA17_Chr3g0127941	34.677	124	76	2	12	131	56	178	6.12e-19	84.0
Msa0380790	MtrunA17_Chr8g0345901	36.667	120	73	1	14	130	38	157	7.29e-19	83.6
Msa0380790	MtrunA17_Chr3g0091641	32.258	124	81	1	12	132	24	147	5.45e-18	81.3
Msa0380790	MtrunA17_Chr1g0181811	31.690	142	94	1	12	150	85	226	1.03e-17	80.5
Msa0380790	MtrunA17_Chr4g0061021	31.452	124	82	1	12	132	33	156	1.54e-17	79.7
Msa0380790	MtrunA17_Chr6g0473731	30.370	135	63	1	88	191	10	144	2.10e-17	79.3
Msa0380790	MtrunA17_Chr4g0054981	33.333	123	80	1	8	130	14	134	3.66e-17	79.0
Msa0380790	MtrunA17_Chr4g0054981	51.515	66	29	2	127	191	296	359	3.71e-12	64.3
Msa0380790	MtrunA17_Chr4g0030271	35.246	122	76	2	12	130	89	210	7.51e-17	77.8
Msa0380790	MtrunA17_Chr5g0423031	37.037	81	50	1	8	88	10	89	1.16e-14	68.9
Msa0380790	MtrunA17_Chr8g0350761	32.773	119	79	1	11	128	20	138	2.89e-13	67.4
Msa0380790	MtrunA17_Chr4g0010001	35.802	81	51	1	8	88	10	89	4.80e-12	59.7
Msa0380790	MtrunA17_Chr4g0040481	47.170	53	28	0	139	191	155	207	2.70e-11	61.6
Msa0380790	MtrunA17_Chr4g0031961	52.941	51	24	0	141	191	130	180	5.64e-11	60.5
Msa0380790	MtrunA17_Chr2g0324891	47.170	53	28	0	139	191	158	210	6.18e-11	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0380790	AT2G25180.1	53.165	237	63	2	3	191	8	244	1.59e-76	240
Msa0380790	AT4G31920.1	53.604	222	67	1	6	191	11	232	4.52e-76	238
Msa0380790	AT5G58080.1	46.414	237	79	2	2	191	8	243	8.53e-61	200
Msa0380790	AT1G67710.1	46.186	236	74	3	9	191	8	243	1.17e-59	194
Msa0380790	AT2G01760.1	40.650	246	87	3	5	191	4	249	5.42e-53	174
Msa0380790	AT2G01760.2	36.496	274	87	4	5	191	4	277	7.40e-47	159
Msa0380790	AT3G16857.1	53.793	145	55	1	8	152	33	165	9.96e-46	160
Msa0380790	AT3G16857.1	56.410	78	24	1	124	191	209	286	1.07e-19	86.7
Msa0380790	AT3G16857.2	53.793	145	55	1	8	152	33	165	1.21e-45	160
Msa0380790	AT3G16857.2	56.410	78	24	1	124	191	209	286	1.12e-19	86.7
Msa0380790	AT5G49240.1	31.950	241	113	2	5	194	35	275	1.45e-37	131
Msa0380790	AT1G67710.2	43.820	178	47	3	67	191	1	178	2.96e-36	131
Msa0380790	AT3G62670.1	34.177	237	107	5	2	191	31	265	1.03e-33	124
Msa0380790	AT3G16857.3	54.206	107	37	1	46	152	1	95	8.32e-33	124
Msa0380790	AT3G16857.3	56.410	78	24	1	124	191	139	216	1.21e-19	86.3
Msa0380790	AT1G49190.1	30.833	240	111	5	7	191	29	268	8.45e-31	116
Msa0380790	AT1G49190.2	38.400	125	77	0	7	131	29	153	2.87e-25	102
Msa0380790	AT1G67710.3	39.873	158	42	3	87	191	12	169	3.60e-25	101
Msa0380790	AT5G61380.1	33.871	124	79	1	12	132	19	142	4.04e-20	87.8
Msa0380790	AT2G46790.3	34.815	135	85	1	12	143	37	171	5.18e-20	87.0
Msa0380790	AT2G46790.1	34.815	135	85	1	12	143	37	171	5.83e-20	87.0
Msa0380790	AT5G24470.1	34.400	125	79	1	10	131	48	172	1.42e-19	86.3
Msa0380790	AT2G01760.3	51.515	66	31	1	67	131	1	66	5.38e-17	77.8
Msa0380790	AT2G01760.3	66.667	51	17	0	141	191	134	184	3.26e-16	75.5
Msa0380790	AT5G02810.1	36.066	122	75	1	12	130	78	199	9.52e-17	78.2
Msa0380790	AT5G60100.7	35.246	122	76	1	12	130	64	185	2.76e-16	76.3
Msa0380790	AT5G60100.6	35.246	122	76	1	12	130	64	185	2.76e-16	76.3
Msa0380790	AT5G60100.4	35.246	122	76	1	12	130	64	185	2.76e-16	76.3
Msa0380790	AT5G60100.2	35.246	122	76	1	12	130	64	185	3.69e-16	76.3
Msa0380790	AT5G60100.5	35.246	122	76	1	12	130	64	185	6.16e-16	75.5
Msa0380790	AT5G60100.3	35.246	122	76	1	12	130	64	185	6.16e-16	75.5
Msa0380790	AT5G60100.1	35.246	122	76	1	12	130	64	185	6.16e-16	75.5
Msa0380790	AT4G18020.8	34.091	132	78	3	6	130	12	141	3.40e-15	73.6
Msa0380790	AT4G18020.8	46.970	66	33	1	128	191	280	345	4.67e-11	61.2
Msa0380790	AT4G18020.11	34.091	132	78	3	6	130	12	141	3.40e-15	73.6
Msa0380790	AT4G18020.11	46.970	66	33	1	128	191	280	345	4.67e-11	61.2
Msa0380790	AT4G18020.4	34.091	132	78	3	6	130	12	141	3.40e-15	73.6
Msa0380790	AT4G18020.4	46.970	66	33	1	128	191	280	345	4.67e-11	61.2
Msa0380790	AT4G18020.5	34.091	132	78	3	6	130	12	141	3.40e-15	73.6
Msa0380790	AT4G18020.5	46.970	66	33	1	128	191	280	345	4.67e-11	61.2
Msa0380790	AT4G18020.10	34.091	132	78	3	6	130	12	141	3.40e-15	73.6
Msa0380790	AT4G18020.10	46.970	66	33	1	128	191	280	345	4.67e-11	61.2
Msa0380790	AT4G18020.7	34.091	132	78	3	6	130	12	141	3.40e-15	73.6
Msa0380790	AT4G18020.7	46.970	66	33	1	128	191	280	345	4.67e-11	61.2
Msa0380790	AT4G18020.3	34.091	132	78	3	6	130	12	141	3.66e-15	73.2
Msa0380790	AT4G18020.3	46.970	66	33	1	128	191	280	345	4.63e-11	61.2
Msa0380790	AT4G18020.2	34.091	132	78	3	6	130	12	141	3.66e-15	73.2
Msa0380790	AT4G18020.2	46.970	66	33	1	128	191	280	345	4.63e-11	61.2
Msa0380790	AT4G18020.1	34.091	132	78	3	6	130	12	141	3.66e-15	73.2
Msa0380790	AT4G18020.1	46.970	66	33	1	128	191	280	345	4.63e-11	61.2
Msa0380790	AT4G18020.6	34.091	132	78	3	6	130	12	141	3.66e-15	73.2
Msa0380790	AT4G18020.6	46.970	66	33	1	128	191	280	345	4.63e-11	61.2
Msa0380790	AT4G18020.9	34.091	132	78	3	6	130	12	141	3.66e-15	73.2
Msa0380790	AT4G18020.9	46.970	66	33	1	128	191	280	345	4.63e-11	61.2
Msa0380790	AT5G07210.2	29.861	144	89	3	12	154	16	148	2.67e-14	70.9
Msa0380790	AT5G44190.2	57.692	52	22	0	140	191	145	196	4.45e-13	67.0
Msa0380790	AT5G44190.1	57.692	52	22	0	140	191	145	196	5.21e-13	67.0
Msa0380790	AT3G46640.2	52.542	59	26	1	135	191	135	193	8.23e-12	63.2
Msa0380790	AT3G46640.1	52.542	59	26	1	135	191	135	193	8.23e-12	63.2
Msa0380790	AT3G46640.3	52.542	59	26	1	135	191	135	193	8.59e-12	63.2
Msa0380790	AT5G07210.1	28.289	152	89	4	12	154	16	156	9.16e-12	63.5
Msa0380790	AT5G59570.2	50.847	59	27	1	135	191	132	190	2.41e-11	61.6
Msa0380790	AT5G59570.1	50.847	59	27	1	135	191	132	190	2.41e-11	61.6
Msa0380790	AT2G40970.1	52.941	51	24	0	141	191	104	154	2.72e-11	61.2
Msa0380790	AT2G20570.1	52.830	53	25	0	139	191	150	202	3.38e-11	61.6
Msa0380790	AT2G20570.2	60.000	45	18	0	147	191	174	218	5.42e-11	61.2

Find 79 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCATGGTGCCTCTGAGTTTC+TGG	0.051652	3_1:-82747903	Msa0380790:CDS
TTTCTTTCACTGAATGTTTC+TGG	0.116372	3_1:-82747357	Msa0380790:three_prime_UTR
ACCAATCATAATTTGCTCTT+TGG	0.298362	3_1:+82747030	None:intergenic
TTGCTCTTTGGCGGAATAGA+AGG	0.330157	3_1:+82747042	None:intergenic
TAGTAGAGAAGAGAAAATTA+TGG	0.377587	3_1:-82748894	Msa0380790:exon
GTTGTACCCGAAAAGATTCT+TGG	0.381343	3_1:-82747477	Msa0380790:CDS
TAGAGGAGCTAAAGACCATT+TGG	0.400234	3_1:-82747865	Msa0380790:CDS
AGCCTCAAGGAGTGCAGATC+AGG	0.403817	3_1:-82747238	Msa0380790:three_prime_UTR
AATGTTTCTGGTTTATGAAA+TGG	0.414593	3_1:-82747345	Msa0380790:three_prime_UTR
GCCAAAGAGCAAATTATGAT+TGG	0.416480	3_1:-82747031	Msa0380790:three_prime_UTR
AGGACGTGGCAAGCCATCTC+CGG	0.418300	3_1:-82747425	Msa0380790:CDS
CCATTTGGCAGCATGTAATT+CGG	0.418909	3_1:-82747850	Msa0380790:CDS
AAACCAACACGCTAGTAGTT+TGG	0.419478	3_1:-82747265	Msa0380790:three_prime_UTR
AGAAGAAGTCCCAGTCTGTT+TGG	0.426238	3_1:-82747796	Msa0380790:CDS
CACGCATTCCGATGGGAAAC+CGG	0.429749	3_1:+82748858	None:intergenic
ACATTTACAGACCAAACAAC+CGG	0.435815	3_1:+82747147	None:intergenic
GGAACTTGAGACGGACCTTC+CGG	0.436170	3_1:-82748096	Msa0380790:CDS
GGTGAAACCTGTGAGATTAG+AGG	0.438440	3_1:-82747882	Msa0380790:CDS
AATCATAATTTGCTCTTTGG+CGG	0.440127	3_1:+82747033	None:intergenic
GTTGCTGCTGTTAATCAGTT+AGG	0.449852	3_1:-82747749	Msa0380790:CDS
CCGAATTACATGCTGCCAAA+TGG	0.458584	3_1:+82747850	None:intergenic
AGCTTAAGTCCATCCATGTC+AGG	0.462326	3_1:+82748131	None:intergenic
TCCGATGGGAAACCGGTCAC+TGG	0.476693	3_1:+82748865	None:intergenic
TTTAGCTCCTCTAATCTCAC+AGG	0.481770	3_1:+82747875	None:intergenic
AAGAGCAAATTATGATTGGT+AGG	0.503759	3_1:-82747027	Msa0380790:three_prime_UTR
GGACGTGGCAAGCCATCTCC+GGG	0.509409	3_1:-82747424	Msa0380790:CDS
GGGGCTTCTTCTGAGCTCAT+GGG	0.512861	3_1:+82747169	None:intergenic
ACTAGAAAATTGCCCGGAGA+TGG	0.513115	3_1:+82747412	None:intergenic
GTCCCAGTCTGTTTGGTCTG+TGG	0.513687	3_1:-82747789	Msa0380790:CDS
ATGCGTGTTCTCGCCGTCGA+CGG	0.517593	3_1:-82748842	Msa0380790:CDS
CGATAATGAGCTAGTGATGA+AGG	0.518138	3_1:-82747933	Msa0380790:CDS
AAAGATGAGGATAAAGAGAA+TGG	0.519948	3_1:-82747207	Msa0380790:three_prime_UTR
GCTCCACAGACCAAACAGAC+TGG	0.522152	3_1:+82747786	None:intergenic
TTCTAAATCCGAGAGATAAG+TGG	0.525410	3_1:+82748814	None:intergenic
GGGACTTCTTCTGAGCTGAT+AGG	0.528115	3_1:+82747807	None:intergenic
TTAGATAAATTAAAGCGTAA+AGG	0.528607	3_1:+82747389	None:intergenic
GGTGCACATCAGCGATTACC+AGG	0.528972	3_1:+82748156	None:intergenic
CGGCGATTCCACTTATCTCT+CGG	0.532887	3_1:-82748822	Msa0380790:CDS
ACTTAAGCTGCTTGAACTTG+TGG	0.534364	3_1:-82748117	Msa0380790:CDS
GGCGAGAACACGCATTCCGA+TGG	0.535415	3_1:+82748850	None:intergenic
CTCCACAGACCAAACAGACT+GGG	0.537731	3_1:+82747787	None:intergenic
GTGCACCTGCCTGACATGGA+TGG	0.546404	3_1:-82748140	Msa0380790:CDS
AAATATTACAAGGGAGGACG+TGG	0.547028	3_1:-82747439	Msa0380790:CDS
GAACTGAACTTACTTACGAC+CGG	0.554201	3_1:+82748077	None:intergenic
AAAGTTAGCTCTGTGGGCTG+TGG	0.555004	3_1:-82747289	Msa0380790:three_prime_UTR
GTGAAGAAAGTTAGCTCTGT+GGG	0.556660	3_1:-82747295	Msa0380790:three_prime_UTR
CATTTACAGACCAAACAACC+GGG	0.558862	3_1:+82747148	None:intergenic
TTATGGATGACTCCAGTGAC+CGG	0.561206	3_1:-82748877	Msa0380790:CDS
GCATGTAATTCGGAAGAAGA+AGG	0.566666	3_1:-82747840	Msa0380790:CDS
TGAACTTGTGGAACTTGAGA+CGG	0.569359	3_1:-82748105	Msa0380790:CDS
TGATGTGCACCTGCCTGACA+TGG	0.573968	3_1:-82748144	Msa0380790:CDS
TAAGTCCATCCATGTCAGGC+AGG	0.574028	3_1:+82748135	None:intergenic
CTCTTTGGCGGAATAGAAGG+AGG	0.575118	3_1:+82747045	None:intergenic
TCCAGTGACCGGTTTCCCAT+CGG	0.576158	3_1:-82748866	Msa0380790:CDS
GTAGTTTGGTGGCAGCCTCA+AGG	0.578073	3_1:-82747251	Msa0380790:three_prime_UTR
TGAATGTTGAAAATATTACA+AGG	0.578744	3_1:-82747449	Msa0380790:CDS
CCAACACGCTAGTAGTTTGG+TGG	0.581455	3_1:-82747262	Msa0380790:three_prime_UTR
ATCCTGATCTGCACTCCTTG+AGG	0.584552	3_1:+82747236	None:intergenic
GACCGTGGTATTGACATGAT+CGG	0.585397	3_1:+82748783	None:intergenic
ATGAGCTCAGAAGAAGCCCC+CGG	0.587881	3_1:-82747166	Msa0380790:three_prime_UTR
CCACCAAACTACTAGCGTGT+TGG	0.591206	3_1:+82747262	None:intergenic
ATAAGTGGAATCGCCGTCGA+CGG	0.593520	3_1:+82748829	None:intergenic
TAAAGGACTAGAAAATTGCC+CGG	0.605859	3_1:+82747406	None:intergenic
GCGAGAACACGCATTCCGAT+GGG	0.617268	3_1:+82748851	None:intergenic
TGAACTTACTTACGACCGGA+AGG	0.625105	3_1:+82748081	None:intergenic
TCAGGATGAAGACAAAGATG+AGG	0.628542	3_1:-82747220	Msa0380790:three_prime_UTR
CCAGAAACTCAGAGGCACCA+TGG	0.637813	3_1:+82747903	None:intergenic
GAATGTTGAAAATATTACAA+GGG	0.643931	3_1:-82747448	Msa0380790:CDS
TAACAGCAGCAACAAACTTG+TGG	0.645143	3_1:+82747759	None:intergenic
TCGGAAGAAGAAGGACAATG+AGG	0.649373	3_1:-82747831	Msa0380790:CDS
TGTTGAAAATATTACAAGGG+AGG	0.651126	3_1:-82747445	Msa0380790:CDS
AAACAAAGACAAGTTTGACC+TGG	0.671629	3_1:-82748174	Msa0380790:CDS
GTGATGAAGGCAGTTTACCA+TGG	0.674402	3_1:-82747920	Msa0380790:CDS
CTCCGATCATGTCAATACCA+CGG	0.699650	3_1:-82748785	Msa0380790:intron
TGTGAAGAAAGTTAGCTCTG+TGG	0.699756	3_1:-82747296	Msa0380790:three_prime_UTR
TTTACAGACCAAACAACCGG+GGG	0.705017	3_1:+82747150	None:intergenic
CGTGGTATTGACATGATCGG+AGG	0.711493	3_1:+82748786	None:intergenic
AGGTTTCACCAGAAACTCAG+AGG	0.716031	3_1:+82747895	None:intergenic
ATTTACAGACCAAACAACCG+GGG	0.719728	3_1:+82747149	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TGAATAAATCAAATAAAATT+GGG	+	chr3_1:82747121-82747140	None:intergenic	10.0%
!!	ATGAATAAATCAAATAAAAT+TGG	+	chr3_1:82747122-82747141	None:intergenic	10.0%
!!!	ATATTTATGTTATTTATGTA+TGG	-	chr3_1:82747602-82747621	Msa0380790:intron	10.0%
!!	AAAAAAAATTATAACAACAA+AGG	+	chr3_1:82747881-82747900	None:intergenic	10.0%
!!!	ATAACTAGTTTTTTTTTTAT+TGG	-	chr3_1:82748754-82748773	Msa0380790:intron	10.0%
!!	ATATTTAAAAAATTTAAGAG+GGG	-	chr3_1:82748912-82748931	Msa0380790:five_prime_UTR	10.0%
!!	TGAATAAATCAAATAAAATT+GGG	+	chr3_1:82747121-82747140	None:intergenic	10.0%
!!	ATGAATAAATCAAATAAAAT+TGG	+	chr3_1:82747122-82747141	None:intergenic	10.0%
!!!	ATATTTATGTTATTTATGTA+TGG	-	chr3_1:82747602-82747621	Msa0380790:intron	10.0%
!!	AAAAAAAATTATAACAACAA+AGG	+	chr3_1:82747881-82747900	None:intergenic	10.0%
!!!	ATAACTAGTTTTTTTTTTAT+TGG	-	chr3_1:82748754-82748773	Msa0380790:intron	10.0%
!!	ATATTTAAAAAATTTAAGAG+GGG	-	chr3_1:82748912-82748931	Msa0380790:five_prime_UTR	10.0%
!!!	TATGTTATTTATACACATTT+TGG	-	chr3_1:82747482-82747501	Msa0380790:CDS	15.0%
!!	GTAAAATGAGAAATAAAATT+CGG	+	chr3_1:82748208-82748227	None:intergenic	15.0%
!!!	TATGTTATTTATACACATTT+TGG	-	chr3_1:82747482-82747501	Msa0380790:CDS	15.0%
!!	GTAAAATGAGAAATAAAATT+CGG	+	chr3_1:82748208-82748227	None:intergenic	15.0%
!!	TGATCATAATTGATAAGTAA+AGG	-	chr3_1:82747175-82747194	Msa0380790:three_prime_UTR	20.0%
!!!	TTATGTTATTTATGTATGGT+TGG	-	chr3_1:82747606-82747625	Msa0380790:intron	20.0%
!!!	TATGTTATTTATGTATGGTT+GGG	-	chr3_1:82747607-82747626	Msa0380790:intron	20.0%
!!	ATTATTGATCAATGATTGTT+TGG	-	chr3_1:82747851-82747870	Msa0380790:CDS	20.0%
!!	AATAAAAATTGTTTGTGTTG+CGG	+	chr3_1:82748161-82748180	None:intergenic	20.0%
!!!	TTTAATTTATTTTCAATCCG+AGG	-	chr3_1:82748243-82748262	Msa0380790:intron	20.0%
!!	TGAAAAAAACTTATGATGAT+AGG	-	chr3_1:82748267-82748286	Msa0380790:intron	20.0%
!!	TGAATGTTGAAAATATTACA+AGG	-	chr3_1:82748409-82748428	Msa0380790:intron	20.0%
!!	GAATGTTGAAAATATTACAA+GGG	-	chr3_1:82748410-82748429	Msa0380790:intron	20.0%
!!	TTAGATAAATTAAAGCGTAA+AGG	+	chr3_1:82748472-82748491	None:intergenic	20.0%
!!!	ACTAGTTTTTTTTTTATTGG+AGG	-	chr3_1:82748757-82748776	Msa0380790:intron	20.0%
!!	TGATCATAATTGATAAGTAA+AGG	-	chr3_1:82747175-82747194	Msa0380790:three_prime_UTR	20.0%
!!!	TTATGTTATTTATGTATGGT+TGG	-	chr3_1:82747606-82747625	Msa0380790:intron	20.0%
!!!	TATGTTATTTATGTATGGTT+GGG	-	chr3_1:82747607-82747626	Msa0380790:intron	20.0%
!!	ATTATTGATCAATGATTGTT+TGG	-	chr3_1:82747851-82747870	Msa0380790:CDS	20.0%
!!	AATAAAAATTGTTTGTGTTG+CGG	+	chr3_1:82748161-82748180	None:intergenic	20.0%
!!!	TTTAATTTATTTTCAATCCG+AGG	-	chr3_1:82748243-82748262	Msa0380790:intron	20.0%
!!	TGAAAAAAACTTATGATGAT+AGG	-	chr3_1:82748267-82748286	Msa0380790:intron	20.0%
!!	TGAATGTTGAAAATATTACA+AGG	-	chr3_1:82748409-82748428	Msa0380790:intron	20.0%
!!	GAATGTTGAAAATATTACAA+GGG	-	chr3_1:82748410-82748429	Msa0380790:intron	20.0%
!!	TTAGATAAATTAAAGCGTAA+AGG	+	chr3_1:82748472-82748491	None:intergenic	20.0%
!!!	ACTAGTTTTTTTTTTATTGG+AGG	-	chr3_1:82748757-82748776	Msa0380790:intron	20.0%
!	TAGTAGAGAAGAGAAAATTA+TGG	-	chr3_1:82746964-82746983	Msa0380790:three_prime_UTR	25.0%
!	CATGCATTATACACATAAAT+TGG	+	chr3_1:82747154-82747173	None:intergenic	25.0%
!	TATGTATATGTAGAGAGATA+CGG	-	chr3_1:82747199-82747218	Msa0380790:three_prime_UTR	25.0%
!!!	TGATGTAGATTTTAGTTTGT+TGG	-	chr3_1:82747235-82747254	Msa0380790:three_prime_UTR	25.0%
!	CACATTTATAAACACTATAG+AGG	+	chr3_1:82747335-82747354	None:intergenic	25.0%
!	TGAATTCAAAGTAAGTTCTT+TGG	+	chr3_1:82747374-82747393	None:intergenic	25.0%
!	GAACTTACTTTGAATTCATT+TGG	-	chr3_1:82747376-82747395	Msa0380790:three_prime_UTR	25.0%
!	ATTGTTCCTATACTATAACA+AGG	+	chr3_1:82747555-82747574	None:intergenic	25.0%
!!	ATGTTATTTATGTATGGTTG+GGG	-	chr3_1:82747608-82747627	Msa0380790:intron	25.0%
!!!	TCATAAGTTTTTTTCAACCT+CGG	+	chr3_1:82748263-82748282	None:intergenic	25.0%
!!!	AATGTTTCTGGTTTATGAAA+TGG	-	chr3_1:82748513-82748532	Msa0380790:intron	25.0%
!	TTTAAAAAATTTAAGAGGGG+AGG	-	chr3_1:82748915-82748934	Msa0380790:five_prime_UTR	25.0%
!	TAGTAGAGAAGAGAAAATTA+TGG	-	chr3_1:82746964-82746983	Msa0380790:three_prime_UTR	25.0%
!	CATGCATTATACACATAAAT+TGG	+	chr3_1:82747154-82747173	None:intergenic	25.0%
!	TATGTATATGTAGAGAGATA+CGG	-	chr3_1:82747199-82747218	Msa0380790:three_prime_UTR	25.0%
!!!	TGATGTAGATTTTAGTTTGT+TGG	-	chr3_1:82747235-82747254	Msa0380790:three_prime_UTR	25.0%
!	CACATTTATAAACACTATAG+AGG	+	chr3_1:82747335-82747354	None:intergenic	25.0%
!	TGAATTCAAAGTAAGTTCTT+TGG	+	chr3_1:82747374-82747393	None:intergenic	25.0%
!	GAACTTACTTTGAATTCATT+TGG	-	chr3_1:82747376-82747395	Msa0380790:three_prime_UTR	25.0%
!	ATTGTTCCTATACTATAACA+AGG	+	chr3_1:82747555-82747574	None:intergenic	25.0%
!!	ATGTTATTTATGTATGGTTG+GGG	-	chr3_1:82747608-82747627	Msa0380790:intron	25.0%
!!!	TCATAAGTTTTTTTCAACCT+CGG	+	chr3_1:82748263-82748282	None:intergenic	25.0%
!!!	AATGTTTCTGGTTTATGAAA+TGG	-	chr3_1:82748513-82748532	Msa0380790:intron	25.0%
!	TTTAAAAAATTTAAGAGGGG+AGG	-	chr3_1:82748915-82748934	Msa0380790:five_prime_UTR	25.0%
	CTTTGAATTCATTTGGACTT+TGG	-	chr3_1:82747383-82747402	Msa0380790:three_prime_UTR	30.0%
!	TGTTGATAAAAAGTTTGACC+TGG	-	chr3_1:82747444-82747463	Msa0380790:CDS	30.0%
!	CAAACTCCTTGTTATAGTAT+AGG	-	chr3_1:82747546-82747565	Msa0380790:intron	30.0%
	TAATGAAACACTTCATGACA+TGG	+	chr3_1:82748340-82748359	None:intergenic	30.0%
	TTCATTACTGAATTTGAGTG+AGG	-	chr3_1:82748353-82748372	Msa0380790:intron	30.0%
!	ATCAAACCAAGAATCTTTTC+GGG	+	chr3_1:82748390-82748409	None:intergenic	30.0%
!	CATCAAACCAAGAATCTTTT+CGG	+	chr3_1:82748391-82748410	None:intergenic	30.0%
	TGTTGAAAATATTACAAGGG+AGG	-	chr3_1:82748413-82748432	Msa0380790:intron	30.0%
	TTTCTTTCACTGAATGTTTC+TGG	-	chr3_1:82748501-82748520	Msa0380790:intron	30.0%
	AAAGATGAGGATAAAGAGAA+TGG	-	chr3_1:82748651-82748670	Msa0380790:intron	30.0%
!!	AATCATAATTTGCTCTTTGG+CGG	+	chr3_1:82748828-82748847	None:intergenic	30.0%
!!	ACCAATCATAATTTGCTCTT+TGG	+	chr3_1:82748831-82748850	None:intergenic	30.0%
	AAGAGCAAATTATGATTGGT+AGG	-	chr3_1:82748831-82748850	Msa0380790:CDS	30.0%
	CTTTGAATTCATTTGGACTT+TGG	-	chr3_1:82747383-82747402	Msa0380790:three_prime_UTR	30.0%
!	TGTTGATAAAAAGTTTGACC+TGG	-	chr3_1:82747444-82747463	Msa0380790:CDS	30.0%
!	CAAACTCCTTGTTATAGTAT+AGG	-	chr3_1:82747546-82747565	Msa0380790:intron	30.0%
	TAATGAAACACTTCATGACA+TGG	+	chr3_1:82748340-82748359	None:intergenic	30.0%
	TTCATTACTGAATTTGAGTG+AGG	-	chr3_1:82748353-82748372	Msa0380790:intron	30.0%
!	ATCAAACCAAGAATCTTTTC+GGG	+	chr3_1:82748390-82748409	None:intergenic	30.0%
!	CATCAAACCAAGAATCTTTT+CGG	+	chr3_1:82748391-82748410	None:intergenic	30.0%
	TGTTGAAAATATTACAAGGG+AGG	-	chr3_1:82748413-82748432	Msa0380790:intron	30.0%
	TTTCTTTCACTGAATGTTTC+TGG	-	chr3_1:82748501-82748520	Msa0380790:intron	30.0%
	AAAGATGAGGATAAAGAGAA+TGG	-	chr3_1:82748651-82748670	Msa0380790:intron	30.0%
!!	AATCATAATTTGCTCTTTGG+CGG	+	chr3_1:82748828-82748847	None:intergenic	30.0%
!!	ACCAATCATAATTTGCTCTT+TGG	+	chr3_1:82748831-82748850	None:intergenic	30.0%
	AAGAGCAAATTATGATTGGT+AGG	-	chr3_1:82748831-82748850	Msa0380790:CDS	30.0%
	TTCTAAATCCGAGAGATAAG+TGG	+	chr3_1:82747047-82747066	None:intergenic	35.0%
!	GTTTGTTGGAAATTCTGCTT+CGG	-	chr3_1:82747249-82747268	Msa0380790:three_prime_UTR	35.0%
	AACAAGGAGTTTGTGAAACT+AGG	+	chr3_1:82747539-82747558	None:intergenic	35.0%
	AACAGCTAGTGAAGCAAAAA+TGG	-	chr3_1:82747642-82747661	Msa0380790:intron	35.0%
	AAACAAAGACAAGTTTGACC+TGG	-	chr3_1:82747684-82747703	Msa0380790:intron	35.0%
!	TTATGATGATAGGTGCTACA+TGG	-	chr3_1:82748277-82748296	Msa0380790:intron	35.0%
	TAAAGGACTAGAAAATTGCC+CGG	+	chr3_1:82748455-82748474	None:intergenic	35.0%
	ACATTTACAGACCAAACAAC+CGG	+	chr3_1:82748714-82748733	None:intergenic	35.0%
!!!	TTCATGACTTCCGTTTTTTC+TGG	-	chr3_1:82748785-82748804	Msa0380790:intron	35.0%
!	GGAGGTTTTTCCAGAAAAAA+CGG	+	chr3_1:82748798-82748817	None:intergenic	35.0%
	GCCAAAGAGCAAATTATGAT+TGG	-	chr3_1:82748827-82748846	Msa0380790:CDS	35.0%
	TTCTAAATCCGAGAGATAAG+TGG	+	chr3_1:82747047-82747066	None:intergenic	35.0%
!	GTTTGTTGGAAATTCTGCTT+CGG	-	chr3_1:82747249-82747268	Msa0380790:three_prime_UTR	35.0%
	AACAAGGAGTTTGTGAAACT+AGG	+	chr3_1:82747539-82747558	None:intergenic	35.0%
	AACAGCTAGTGAAGCAAAAA+TGG	-	chr3_1:82747642-82747661	Msa0380790:intron	35.0%
	AAACAAAGACAAGTTTGACC+TGG	-	chr3_1:82747684-82747703	Msa0380790:intron	35.0%
!	TTATGATGATAGGTGCTACA+TGG	-	chr3_1:82748277-82748296	Msa0380790:intron	35.0%
	TAAAGGACTAGAAAATTGCC+CGG	+	chr3_1:82748455-82748474	None:intergenic	35.0%
	ACATTTACAGACCAAACAAC+CGG	+	chr3_1:82748714-82748733	None:intergenic	35.0%
!!!	TTCATGACTTCCGTTTTTTC+TGG	-	chr3_1:82748785-82748804	Msa0380790:intron	35.0%
!	GGAGGTTTTTCCAGAAAAAA+CGG	+	chr3_1:82748798-82748817	None:intergenic	35.0%
	GCCAAAGAGCAAATTATGAT+TGG	-	chr3_1:82748827-82748846	Msa0380790:CDS	35.0%
	AAAAGAAAAGAAGCAGACCG+TGG	+	chr3_1:82747093-82747112	None:intergenic	40.0%
	AATTAACCACCTCAAAGCCA+AGG	+	chr3_1:82747289-82747308	None:intergenic	40.0%
	GAGGTCATATCTAAGCAATG+TGG	+	chr3_1:82747316-82747335	None:intergenic	40.0%
	ATACCATAACAGCGATTACC+AGG	+	chr3_1:82747465-82747484	None:intergenic	40.0%
	GATCAAAGACTCCTAAGTCA+TGG	-	chr3_1:82747504-82747523	Msa0380790:intron	40.0%
	GGTCAAACATACCATGACTT+AGG	+	chr3_1:82747518-82747537	None:intergenic	40.0%
	ACTTAAGCTGCTTGAACTTG+TGG	-	chr3_1:82747741-82747760	Msa0380790:CDS	40.0%
	TGAACTTGTGGAACTTGAGA+CGG	-	chr3_1:82747753-82747772	Msa0380790:CDS	40.0%
	GAACTGAACTTACTTACGAC+CGG	+	chr3_1:82747784-82747803	None:intergenic	40.0%
	CGATAATGAGCTAGTGATGA+AGG	-	chr3_1:82747925-82747944	Msa0380790:CDS	40.0%
!	TTTAGCTCCTCTAATCTCAC+AGG	+	chr3_1:82747986-82748005	None:intergenic	40.0%
	TAGAGGAGCTAAAGACCATT+TGG	-	chr3_1:82747993-82748012	Msa0380790:intron	40.0%
	CCATTTGGCAGCATGTAATT+CGG	-	chr3_1:82748008-82748027	Msa0380790:intron	40.0%
	GCATGTAATTCGGAAGAAGA+AGG	-	chr3_1:82748018-82748037	Msa0380790:intron	40.0%
	TAACAGCAGCAACAAACTTG+TGG	+	chr3_1:82748102-82748121	None:intergenic	40.0%
	GTTGCTGCTGTTAATCAGTT+AGG	-	chr3_1:82748109-82748128	Msa0380790:CDS	40.0%
	TCAAGCTCGAGGAAATTGAT+GGG	+	chr3_1:82748185-82748204	None:intergenic	40.0%
	ATAAAATTCGGTCAAGCTCG+AGG	+	chr3_1:82748196-82748215	None:intergenic	40.0%
	GTTGTACCCGAAAAGATTCT+TGG	-	chr3_1:82748381-82748400	Msa0380790:intron	40.0%
	AAATATTACAAGGGAGGACG+TGG	-	chr3_1:82748419-82748438	Msa0380790:intron	40.0%
!!	TGTGAAGAAAGTTAGCTCTG+TGG	-	chr3_1:82748562-82748581	Msa0380790:intron	40.0%
!!	GTGAAGAAAGTTAGCTCTGT+GGG	-	chr3_1:82748563-82748582	Msa0380790:intron	40.0%
	AAACCAACACGCTAGTAGTT+TGG	-	chr3_1:82748593-82748612	Msa0380790:intron	40.0%
	TCAGGATGAAGACAAAGATG+AGG	-	chr3_1:82748638-82748657	Msa0380790:intron	40.0%
	ATTTACAGACCAAACAACCG+GGG	+	chr3_1:82748712-82748731	None:intergenic	40.0%
	CATTTACAGACCAAACAACC+GGG	+	chr3_1:82748713-82748732	None:intergenic	40.0%
!!	GTAGGTTTTAATCTGCGATG+CGG	-	chr3_1:82748849-82748868	Msa0380790:CDS	40.0%
	AAAAGAAAAGAAGCAGACCG+TGG	+	chr3_1:82747093-82747112	None:intergenic	40.0%
	AATTAACCACCTCAAAGCCA+AGG	+	chr3_1:82747289-82747308	None:intergenic	40.0%
	GAGGTCATATCTAAGCAATG+TGG	+	chr3_1:82747316-82747335	None:intergenic	40.0%
	ATACCATAACAGCGATTACC+AGG	+	chr3_1:82747465-82747484	None:intergenic	40.0%
	GATCAAAGACTCCTAAGTCA+TGG	-	chr3_1:82747504-82747523	Msa0380790:intron	40.0%
	GGTCAAACATACCATGACTT+AGG	+	chr3_1:82747518-82747537	None:intergenic	40.0%
	ACTTAAGCTGCTTGAACTTG+TGG	-	chr3_1:82747741-82747760	Msa0380790:CDS	40.0%
	TGAACTTGTGGAACTTGAGA+CGG	-	chr3_1:82747753-82747772	Msa0380790:CDS	40.0%
	GAACTGAACTTACTTACGAC+CGG	+	chr3_1:82747784-82747803	None:intergenic	40.0%
	CGATAATGAGCTAGTGATGA+AGG	-	chr3_1:82747925-82747944	Msa0380790:CDS	40.0%
!	TTTAGCTCCTCTAATCTCAC+AGG	+	chr3_1:82747986-82748005	None:intergenic	40.0%
	TAGAGGAGCTAAAGACCATT+TGG	-	chr3_1:82747993-82748012	Msa0380790:intron	40.0%
	CCATTTGGCAGCATGTAATT+CGG	-	chr3_1:82748008-82748027	Msa0380790:intron	40.0%
	GCATGTAATTCGGAAGAAGA+AGG	-	chr3_1:82748018-82748037	Msa0380790:intron	40.0%
	TAACAGCAGCAACAAACTTG+TGG	+	chr3_1:82748102-82748121	None:intergenic	40.0%
	GTTGCTGCTGTTAATCAGTT+AGG	-	chr3_1:82748109-82748128	Msa0380790:CDS	40.0%
	TCAAGCTCGAGGAAATTGAT+GGG	+	chr3_1:82748185-82748204	None:intergenic	40.0%
	ATAAAATTCGGTCAAGCTCG+AGG	+	chr3_1:82748196-82748215	None:intergenic	40.0%
	GTTGTACCCGAAAAGATTCT+TGG	-	chr3_1:82748381-82748400	Msa0380790:intron	40.0%
	AAATATTACAAGGGAGGACG+TGG	-	chr3_1:82748419-82748438	Msa0380790:intron	40.0%
!!	TGTGAAGAAAGTTAGCTCTG+TGG	-	chr3_1:82748562-82748581	Msa0380790:intron	40.0%
!!	GTGAAGAAAGTTAGCTCTGT+GGG	-	chr3_1:82748563-82748582	Msa0380790:intron	40.0%
	AAACCAACACGCTAGTAGTT+TGG	-	chr3_1:82748593-82748612	Msa0380790:intron	40.0%
	TCAGGATGAAGACAAAGATG+AGG	-	chr3_1:82748638-82748657	Msa0380790:intron	40.0%
	ATTTACAGACCAAACAACCG+GGG	+	chr3_1:82748712-82748731	None:intergenic	40.0%
	CATTTACAGACCAAACAACC+GGG	+	chr3_1:82748713-82748732	None:intergenic	40.0%
!!	GTAGGTTTTAATCTGCGATG+CGG	-	chr3_1:82748849-82748868	Msa0380790:CDS	40.0%
	TTATGGATGACTCCAGTGAC+CGG	-	chr3_1:82746981-82747000	Msa0380790:three_prime_UTR	45.0%
	CTCCGATCATGTCAATACCA+CGG	-	chr3_1:82747073-82747092	Msa0380790:three_prime_UTR	45.0%
!!	GACCGTGGTATTGACATGAT+CGG	+	chr3_1:82747078-82747097	None:intergenic	45.0%
	TTGGAAATTCTGCTTCGGTC+CGG	-	chr3_1:82747254-82747273	Msa0380790:three_prime_UTR	45.0%
	TGACCTGGTAATCGCTGTTA+TGG	-	chr3_1:82747459-82747478	Msa0380790:CDS	45.0%
	AGCTTAAGTCCATCCATGTC+AGG	+	chr3_1:82747730-82747749	None:intergenic	45.0%
	TGAACTTACTTACGACCGGA+AGG	+	chr3_1:82747780-82747799	None:intergenic	45.0%
	GTGATGAAGGCAGTTTACCA+TGG	-	chr3_1:82747938-82747957	Msa0380790:CDS	45.0%
	AGGTTTCACCAGAAACTCAG+AGG	+	chr3_1:82747966-82747985	None:intergenic	45.0%
	GGTGAAACCTGTGAGATTAG+AGG	-	chr3_1:82747976-82747995	Msa0380790:intron	45.0%
	CCGAATTACATGCTGCCAAA+TGG	+	chr3_1:82748011-82748030	None:intergenic	45.0%
	TCGGAAGAAGAAGGACAATG+AGG	-	chr3_1:82748027-82748046	Msa0380790:intron	45.0%
	AGAAGAAGTCCCAGTCTGTT+TGG	-	chr3_1:82748062-82748081	Msa0380790:intron	45.0%
	GTCAAGCTCGAGGAAATTGA+TGG	+	chr3_1:82748186-82748205	None:intergenic	45.0%
	ACTGAATTTGAGTGAGGCAG+AGG	-	chr3_1:82748359-82748378	Msa0380790:intron	45.0%
	ACTAGAAAATTGCCCGGAGA+TGG	+	chr3_1:82748449-82748468	None:intergenic	45.0%
	TTTACAGACCAAACAACCGG+GGG	+	chr3_1:82748711-82748730	None:intergenic	45.0%
	TTGCTCTTTGGCGGAATAGA+AGG	+	chr3_1:82748819-82748838	None:intergenic	45.0%
	TTATGGATGACTCCAGTGAC+CGG	-	chr3_1:82746981-82747000	Msa0380790:three_prime_UTR	45.0%
	CTCCGATCATGTCAATACCA+CGG	-	chr3_1:82747073-82747092	Msa0380790:three_prime_UTR	45.0%
!!	GACCGTGGTATTGACATGAT+CGG	+	chr3_1:82747078-82747097	None:intergenic	45.0%
	TTGGAAATTCTGCTTCGGTC+CGG	-	chr3_1:82747254-82747273	Msa0380790:three_prime_UTR	45.0%
	TGACCTGGTAATCGCTGTTA+TGG	-	chr3_1:82747459-82747478	Msa0380790:CDS	45.0%
	AGCTTAAGTCCATCCATGTC+AGG	+	chr3_1:82747730-82747749	None:intergenic	45.0%
	TGAACTTACTTACGACCGGA+AGG	+	chr3_1:82747780-82747799	None:intergenic	45.0%
	GTGATGAAGGCAGTTTACCA+TGG	-	chr3_1:82747938-82747957	Msa0380790:CDS	45.0%
	AGGTTTCACCAGAAACTCAG+AGG	+	chr3_1:82747966-82747985	None:intergenic	45.0%
	GGTGAAACCTGTGAGATTAG+AGG	-	chr3_1:82747976-82747995	Msa0380790:intron	45.0%
	CCGAATTACATGCTGCCAAA+TGG	+	chr3_1:82748011-82748030	None:intergenic	45.0%
	TCGGAAGAAGAAGGACAATG+AGG	-	chr3_1:82748027-82748046	Msa0380790:intron	45.0%
	AGAAGAAGTCCCAGTCTGTT+TGG	-	chr3_1:82748062-82748081	Msa0380790:intron	45.0%
	GTCAAGCTCGAGGAAATTGA+TGG	+	chr3_1:82748186-82748205	None:intergenic	45.0%
	ACTGAATTTGAGTGAGGCAG+AGG	-	chr3_1:82748359-82748378	Msa0380790:intron	45.0%
	ACTAGAAAATTGCCCGGAGA+TGG	+	chr3_1:82748449-82748468	None:intergenic	45.0%
	TTTACAGACCAAACAACCGG+GGG	+	chr3_1:82748711-82748730	None:intergenic	45.0%
	TTGCTCTTTGGCGGAATAGA+AGG	+	chr3_1:82748819-82748838	None:intergenic	45.0%
!!!	TAAATTTTTTAAATATAACA+AGG	+	chr3_1:82748908-82748927	None:intergenic	5.0%
!!	TTATATTTAAAAAATTTAAG+AGG	-	chr3_1:82748910-82748929	Msa0380790:five_prime_UTR	5.0%
!!	TATATTTAAAAAATTTAAGA+GGG	-	chr3_1:82748911-82748930	Msa0380790:five_prime_UTR	5.0%
!!!	TAAATTTTTTAAATATAACA+AGG	+	chr3_1:82748908-82748927	None:intergenic	5.0%
!!	TTATATTTAAAAAATTTAAG+AGG	-	chr3_1:82748910-82748929	Msa0380790:five_prime_UTR	5.0%
!!	TATATTTAAAAAATTTAAGA+GGG	-	chr3_1:82748911-82748930	Msa0380790:five_prime_UTR	5.0%
	ATAAGTGGAATCGCCGTCGA+CGG	+	chr3_1:82747032-82747051	None:intergenic	50.0%
	CGGCGATTCCACTTATCTCT+CGG	-	chr3_1:82747036-82747055	Msa0380790:three_prime_UTR	50.0%
!!	CGTGGTATTGACATGATCGG+AGG	+	chr3_1:82747075-82747094	None:intergenic	50.0%
	AAAGCCAAGGCAGCAAATGC+CGG	+	chr3_1:82747276-82747295	None:intergenic	50.0%
!!	CATTTGCTGCCTTGGCTTTG+AGG	-	chr3_1:82747277-82747296	Msa0380790:three_prime_UTR	50.0%
	TAAGTCCATCCATGTCAGGC+AGG	+	chr3_1:82747726-82747745	None:intergenic	50.0%
	GGGACTTCTTCTGAGCTGAT+AGG	+	chr3_1:82748054-82748073	None:intergenic	50.0%
	CTCCACAGACCAAACAGACT+GGG	+	chr3_1:82748074-82748093	None:intergenic	50.0%
	TGTTTGTGTTGCGGACAGAG+TGG	+	chr3_1:82748152-82748171	None:intergenic	50.0%
!!	AAAGTTAGCTCTGTGGGCTG+TGG	-	chr3_1:82748569-82748588	Msa0380790:intron	50.0%
	CCACCAAACTACTAGCGTGT+TGG	+	chr3_1:82748599-82748618	None:intergenic	50.0%
	CCAACACGCTAGTAGTTTGG+TGG	-	chr3_1:82748596-82748615	Msa0380790:intron	50.0%
	ATCCTGATCTGCACTCCTTG+AGG	+	chr3_1:82748625-82748644	None:intergenic	50.0%
	CTCTTTGGCGGAATAGAAGG+AGG	+	chr3_1:82748816-82748835	None:intergenic	50.0%
	ATAAGTGGAATCGCCGTCGA+CGG	+	chr3_1:82747032-82747051	None:intergenic	50.0%
	CGGCGATTCCACTTATCTCT+CGG	-	chr3_1:82747036-82747055	Msa0380790:three_prime_UTR	50.0%
!!	CGTGGTATTGACATGATCGG+AGG	+	chr3_1:82747075-82747094	None:intergenic	50.0%
	AAAGCCAAGGCAGCAAATGC+CGG	+	chr3_1:82747276-82747295	None:intergenic	50.0%
!!	CATTTGCTGCCTTGGCTTTG+AGG	-	chr3_1:82747277-82747296	Msa0380790:three_prime_UTR	50.0%
	TAAGTCCATCCATGTCAGGC+AGG	+	chr3_1:82747726-82747745	None:intergenic	50.0%
	GGGACTTCTTCTGAGCTGAT+AGG	+	chr3_1:82748054-82748073	None:intergenic	50.0%
	CTCCACAGACCAAACAGACT+GGG	+	chr3_1:82748074-82748093	None:intergenic	50.0%
	TGTTTGTGTTGCGGACAGAG+TGG	+	chr3_1:82748152-82748171	None:intergenic	50.0%
!!	AAAGTTAGCTCTGTGGGCTG+TGG	-	chr3_1:82748569-82748588	Msa0380790:intron	50.0%
	CCACCAAACTACTAGCGTGT+TGG	+	chr3_1:82748599-82748618	None:intergenic	50.0%
	CCAACACGCTAGTAGTTTGG+TGG	-	chr3_1:82748596-82748615	Msa0380790:intron	50.0%
	ATCCTGATCTGCACTCCTTG+AGG	+	chr3_1:82748625-82748644	None:intergenic	50.0%
	CTCTTTGGCGGAATAGAAGG+AGG	+	chr3_1:82748816-82748835	None:intergenic	50.0%
!	TCCAGTGACCGGTTTCCCAT+CGG	-	chr3_1:82746992-82747011	Msa0380790:three_prime_UTR	55.0%
	CACGCATTCCGATGGGAAAC+CGG	+	chr3_1:82747003-82747022	None:intergenic	55.0%
	GCGAGAACACGCATTCCGAT+GGG	+	chr3_1:82747010-82747029	None:intergenic	55.0%
!!	TTGCTGCCTTGGCTTTGAGG+TGG	-	chr3_1:82747280-82747299	Msa0380790:three_prime_UTR	55.0%
	GGTGCACATCAGCGATTACC+AGG	+	chr3_1:82747705-82747724	None:intergenic	55.0%
	TGATGTGCACCTGCCTGACA+TGG	-	chr3_1:82747714-82747733	Msa0380790:intron	55.0%
	GGAACTTGAGACGGACCTTC+CGG	-	chr3_1:82747762-82747781	Msa0380790:CDS	55.0%
!!	CCAGAAACTCAGAGGCACCA+TGG	+	chr3_1:82747958-82747977	None:intergenic	55.0%
	CCATGGTGCCTCTGAGTTTC+TGG	-	chr3_1:82747955-82747974	Msa0380790:intron	55.0%
	GTCCCAGTCTGTTTGGTCTG+TGG	-	chr3_1:82748069-82748088	Msa0380790:intron	55.0%
	GCTCCACAGACCAAACAGAC+TGG	+	chr3_1:82748075-82748094	None:intergenic	55.0%
!	GTAGTTTGGTGGCAGCCTCA+AGG	-	chr3_1:82748607-82748626	Msa0380790:intron	55.0%
!	AGCCTCAAGGAGTGCAGATC+AGG	-	chr3_1:82748620-82748639	Msa0380790:intron	55.0%
	GGGGCTTCTTCTGAGCTCAT+GGG	+	chr3_1:82748692-82748711	None:intergenic	55.0%
	ATGAGCTCAGAAGAAGCCCC+CGG	-	chr3_1:82748692-82748711	Msa0380790:intron	55.0%
	AGAAGAAGCCCCCGGTTGTT+TGG	-	chr3_1:82748700-82748719	Msa0380790:intron	55.0%
!	TCCAGTGACCGGTTTCCCAT+CGG	-	chr3_1:82746992-82747011	Msa0380790:three_prime_UTR	55.0%
	CACGCATTCCGATGGGAAAC+CGG	+	chr3_1:82747003-82747022	None:intergenic	55.0%
	GCGAGAACACGCATTCCGAT+GGG	+	chr3_1:82747010-82747029	None:intergenic	55.0%
!!	TTGCTGCCTTGGCTTTGAGG+TGG	-	chr3_1:82747280-82747299	Msa0380790:three_prime_UTR	55.0%
	GGTGCACATCAGCGATTACC+AGG	+	chr3_1:82747705-82747724	None:intergenic	55.0%
	TGATGTGCACCTGCCTGACA+TGG	-	chr3_1:82747714-82747733	Msa0380790:intron	55.0%
	GGAACTTGAGACGGACCTTC+CGG	-	chr3_1:82747762-82747781	Msa0380790:CDS	55.0%
!!	CCAGAAACTCAGAGGCACCA+TGG	+	chr3_1:82747958-82747977	None:intergenic	55.0%
	CCATGGTGCCTCTGAGTTTC+TGG	-	chr3_1:82747955-82747974	Msa0380790:intron	55.0%
	GTCCCAGTCTGTTTGGTCTG+TGG	-	chr3_1:82748069-82748088	Msa0380790:intron	55.0%
	GCTCCACAGACCAAACAGAC+TGG	+	chr3_1:82748075-82748094	None:intergenic	55.0%
!	GTAGTTTGGTGGCAGCCTCA+AGG	-	chr3_1:82748607-82748626	Msa0380790:intron	55.0%
!	AGCCTCAAGGAGTGCAGATC+AGG	-	chr3_1:82748620-82748639	Msa0380790:intron	55.0%
	GGGGCTTCTTCTGAGCTCAT+GGG	+	chr3_1:82748692-82748711	None:intergenic	55.0%
	ATGAGCTCAGAAGAAGCCCC+CGG	-	chr3_1:82748692-82748711	Msa0380790:intron	55.0%
	AGAAGAAGCCCCCGGTTGTT+TGG	-	chr3_1:82748700-82748719	Msa0380790:intron	55.0%
	TCCGATGGGAAACCGGTCAC+TGG	+	chr3_1:82746996-82747015	None:intergenic	60.0%
	GGCGAGAACACGCATTCCGA+TGG	+	chr3_1:82747011-82747030	None:intergenic	60.0%
	ATGCGTGTTCTCGCCGTCGA+CGG	-	chr3_1:82747016-82747035	Msa0380790:three_prime_UTR	60.0%
	GTGCACCTGCCTGACATGGA+TGG	-	chr3_1:82747718-82747737	Msa0380790:intron	60.0%
	AGGACGTGGCAAGCCATCTC+CGG	-	chr3_1:82748433-82748452	Msa0380790:intron	60.0%
	GGGGGCTTCTTCTGAGCTCA+TGG	+	chr3_1:82748693-82748712	None:intergenic	60.0%
	TCCGATGGGAAACCGGTCAC+TGG	+	chr3_1:82746996-82747015	None:intergenic	60.0%
	GGCGAGAACACGCATTCCGA+TGG	+	chr3_1:82747011-82747030	None:intergenic	60.0%
	ATGCGTGTTCTCGCCGTCGA+CGG	-	chr3_1:82747016-82747035	Msa0380790:three_prime_UTR	60.0%
	GTGCACCTGCCTGACATGGA+TGG	-	chr3_1:82747718-82747737	Msa0380790:intron	60.0%
	AGGACGTGGCAAGCCATCTC+CGG	-	chr3_1:82748433-82748452	Msa0380790:intron	60.0%
	GGGGGCTTCTTCTGAGCTCA+TGG	+	chr3_1:82748693-82748712	None:intergenic	60.0%
!	CGGTCCGGCATTTGCTGCCT+TGG	-	chr3_1:82747269-82747288	Msa0380790:three_prime_UTR	65.0%
	GGACGTGGCAAGCCATCTCC+GGG	-	chr3_1:82748434-82748453	Msa0380790:intron	65.0%
!	CGGTCCGGCATTTGCTGCCT+TGG	-	chr3_1:82747269-82747288	Msa0380790:three_prime_UTR	65.0%
	GGACGTGGCAAGCCATCTCC+GGG	-	chr3_1:82748434-82748453	Msa0380790:intron	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	82746936	82748944	82746936	ID=Msa0380790;Name=Msa0380790
chr3_1	mRNA	82746936	82748944	82746936	ID=Msa0380790-mRNA-1;Parent=Msa0380790;Name=Msa0380790-mRNA-1;_AED=0.03;_eAED=0.03;_QI=47\|1\|1\|1\|0.66\|0.75\|4\|477\|194
chr3_1	exon	82746936	82747501	82746936	ID=Msa0380790-mRNA-1:exon:21125;Parent=Msa0380790-mRNA-1
chr3_1	exon	82747741	82747971	82747741	ID=Msa0380790-mRNA-1:exon:21124;Parent=Msa0380790-mRNA-1
chr3_1	exon	82748090	82748242	82748090	ID=Msa0380790-mRNA-1:exon:21123;Parent=Msa0380790-mRNA-1
chr3_1	exon	82748786	82748944	82748786	ID=Msa0380790-mRNA-1:exon:21122;Parent=Msa0380790-mRNA-1
chr3_1	five_prime_UTR	82748898	82748944	82748898	ID=Msa0380790-mRNA-1:five_prime_utr;Parent=Msa0380790-mRNA-1
chr3_1	CDS	82748786	82748897	82748786	ID=Msa0380790-mRNA-1:cds;Parent=Msa0380790-mRNA-1
chr3_1	CDS	82748090	82748242	82748090	ID=Msa0380790-mRNA-1:cds;Parent=Msa0380790-mRNA-1
chr3_1	CDS	82747741	82747971	82747741	ID=Msa0380790-mRNA-1:cds;Parent=Msa0380790-mRNA-1
chr3_1	CDS	82747413	82747501	82747413	ID=Msa0380790-mRNA-1:cds;Parent=Msa0380790-mRNA-1
chr3_1	three_prime_UTR	82746936	82747412	82746936	ID=Msa0380790-mRNA-1:three_prime_utr;Parent=Msa0380790-mRNA-1

Gene Sequence

>Msa0380790

ATGGATGACTCCAGTGACCGGTTTCCCATCGGAATGCGTGTTCTCGCCGTCGACGGCGATTCCACTTATCTCTCGGATTTAGAAACTCGCCTCCGATCATGTCAATACCACGTAACAACAGCTAGTGAAGCAAAAATGGCATTGACTATGTTGCGAGAAAACAAAGACAAGTTTGACCTGGTAATCGCTGATGTGCACCTGCCTGACATGGATGGACTTAAGCTGCTTGAACTTGTGGAACTTGAGACGGACCTTCCGGTCGTAATGTTGTCTGAATCTAGCGATAATGAGCTAGTGATGAAGGCAGTTTACCATGGTGCCTCTGAGTTTCTGGTGAAACCTGTGAGATTAGAGGAGCTAAAGACCATTTGGCAGCATGTAATTCGGAAGAAGAAGGACAATGAGGACCTATCAGCTCAGAAGAAGTCCCAGTCTGTTTGGTCTGTGGAGCTGCACCACAAGTTTGTTGCTGCTGTTAATCAGTTAGGCATTGACAAGGTTGTACCCGAAAAGATTCTTGGTTTGATGAATGTTGAAAATATTACAAGGGAGGACGTGGCAAGCCATCTCCGGGCAATTTTCTAG

Protein sequence

>Msa0380790

MDDSSDRFPIGMRVLAVDGDSTYLSDLETRLRSCQYHVTTASEAKMALTMLRENKDKFDLVIADVHLPDMDGLKLLELVELETDLPVVMLSESSDNELVMKAVYHGASEFLVKPVRLEELKTIWQHVIRKKKDNEDLSAQKKSQSVWSVELHHKFVAAVNQLGIDKVVPEKILGLMNVENITREDVASHLRAIF*