Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381010 | XP_013461773.1 | 89.441 | 322 | 27 | 2 | 1 | 316 | 1 | 321 | 0.0 | 596 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381010 | sp|Q7XHI9|BH084_ARATH | 50.230 | 217 | 74 | 6 | 109 | 307 | 121 | 321 | 3.15e-55 | 185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381010 | A0A072V390 | 89.441 | 322 | 27 | 2 | 1 | 316 | 1 | 321 | 0.0 | 596 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0381010 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381010 | MtrunA17_Chr3g0134741 | 89.441 | 322 | 27 | 2 | 1 | 316 | 1 | 321 | 0.0 | 596 |
| Msa0381010 | MtrunA17_Chr1g0152651 | 49.862 | 363 | 103 | 11 | 1 | 298 | 1 | 349 | 7.86e-86 | 262 |
| Msa0381010 | MtrunA17_Chr5g0393721 | 40.361 | 332 | 149 | 14 | 1 | 307 | 1 | 308 | 3.65e-55 | 182 |
| Msa0381010 | MtrunA17_Chr1g0207301 | 51.445 | 173 | 63 | 4 | 147 | 308 | 211 | 373 | 4.22e-46 | 160 |
| Msa0381010 | MtrunA17_Chr1g0207311 | 78.161 | 87 | 19 | 0 | 222 | 308 | 195 | 281 | 2.00e-43 | 150 |
| Msa0381010 | MtrunA17_Chr5g0435021 | 58.571 | 70 | 29 | 0 | 222 | 291 | 217 | 286 | 1.54e-22 | 95.5 |
| Msa0381010 | MtrunA17_Chr4g0074161 | 52.632 | 76 | 36 | 0 | 222 | 297 | 205 | 280 | 2.63e-18 | 84.7 |
| Msa0381010 | MtrunA17_Chr8g0384141 | 60.606 | 66 | 25 | 1 | 222 | 287 | 114 | 178 | 1.26e-17 | 81.3 |
| Msa0381010 | MtrunA17_Chr1g0190731 | 46.341 | 82 | 44 | 0 | 222 | 303 | 192 | 273 | 3.98e-16 | 78.2 |
| Msa0381010 | MtrunA17_Chr3g0134001 | 53.968 | 63 | 29 | 0 | 223 | 285 | 171 | 233 | 7.48e-16 | 76.3 |
| Msa0381010 | MtrunA17_Chr7g0243041 | 54.545 | 55 | 25 | 0 | 230 | 284 | 33 | 87 | 7.73e-15 | 70.9 |
| Msa0381010 | MtrunA17_Chr1g0153241 | 34.167 | 120 | 73 | 2 | 181 | 300 | 49 | 162 | 1.03e-13 | 70.1 |
| Msa0381010 | MtrunA17_Chr1g0193321 | 45.455 | 66 | 36 | 0 | 221 | 286 | 460 | 525 | 3.50e-13 | 70.1 |
| Msa0381010 | MtrunA17_Chr4g0014771 | 53.030 | 66 | 30 | 1 | 222 | 286 | 117 | 182 | 9.49e-13 | 65.9 |
| Msa0381010 | MtrunA17_Chr8g0363921 | 31.847 | 157 | 88 | 5 | 139 | 286 | 69 | 215 | 3.06e-12 | 65.9 |
| Msa0381010 | MtrunA17_Chr4g0032951 | 39.823 | 113 | 66 | 2 | 175 | 286 | 308 | 419 | 4.37e-12 | 66.6 |
| Msa0381010 | MtrunA17_Chr1g0182791 | 43.939 | 66 | 37 | 0 | 221 | 286 | 315 | 380 | 4.78e-12 | 66.6 |
| Msa0381010 | MtrunA17_Chr3g0095391 | 30.822 | 146 | 89 | 2 | 154 | 292 | 233 | 373 | 5.02e-12 | 66.2 |
| Msa0381010 | MtrunA17_Chr6g0484271 | 44.318 | 88 | 44 | 2 | 204 | 286 | 132 | 219 | 6.36e-12 | 65.1 |
| Msa0381010 | MtrunA17_Chr1g0174271 | 54.545 | 66 | 29 | 1 | 222 | 286 | 297 | 362 | 1.07e-11 | 65.1 |
| Msa0381010 | MtrunA17_Chr7g0234761 | 30.526 | 190 | 116 | 5 | 98 | 286 | 207 | 381 | 1.10e-11 | 65.5 |
| Msa0381010 | MtrunA17_Chr8g0339091 | 53.125 | 64 | 29 | 1 | 224 | 286 | 292 | 355 | 1.54e-11 | 65.1 |
| Msa0381010 | MtrunA17_Chr5g0402031 | 42.188 | 64 | 37 | 0 | 236 | 299 | 118 | 181 | 1.57e-11 | 64.3 |
| Msa0381010 | MtrunA17_Chr1g0152131 | 51.562 | 64 | 30 | 1 | 224 | 286 | 261 | 324 | 2.19e-11 | 64.3 |
| Msa0381010 | MtrunA17_Chr7g0270871 | 46.269 | 67 | 34 | 1 | 220 | 286 | 201 | 265 | 2.36e-11 | 63.9 |
| Msa0381010 | MtrunA17_Chr5g0415291 | 44.565 | 92 | 42 | 3 | 201 | 286 | 88 | 176 | 2.66e-11 | 62.8 |
| Msa0381010 | MtrunA17_Chr4g0035101 | 51.562 | 64 | 30 | 1 | 224 | 286 | 144 | 207 | 4.17e-11 | 63.2 |
| Msa0381010 | MtrunA17_Chr7g0231461 | 50.000 | 60 | 28 | 1 | 226 | 285 | 302 | 359 | 6.18e-11 | 63.2 |
| Msa0381010 | MtrunA17_Chr3g0144641 | 51.562 | 64 | 30 | 1 | 224 | 286 | 192 | 255 | 6.77e-11 | 62.8 |
| Msa0381010 | MtrunA17_Chr3g0131771 | 53.125 | 64 | 29 | 1 | 224 | 286 | 148 | 211 | 6.79e-11 | 62.4 |
| Msa0381010 | MtrunA17_Chr2g0329041 | 51.562 | 64 | 30 | 1 | 222 | 284 | 331 | 394 | 7.25e-11 | 62.8 |
| Msa0381010 | MtrunA17_Chr5g0421111 | 51.562 | 64 | 30 | 1 | 224 | 286 | 366 | 429 | 7.42e-11 | 62.8 |
| Msa0381010 | MtrunA17_Chr8g0365941 | 51.562 | 64 | 30 | 1 | 224 | 286 | 306 | 369 | 9.30e-11 | 62.4 |
| Msa0381010 | MtrunA17_Chr7g0262691 | 36.559 | 93 | 54 | 1 | 191 | 283 | 225 | 312 | 9.74e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381010 | AT2G14760.1 | 50.230 | 217 | 74 | 6 | 109 | 307 | 121 | 321 | 3.20e-56 | 185 |
| Msa0381010 | AT4G33880.1 | 59.119 | 159 | 62 | 1 | 150 | 305 | 190 | 348 | 1.09e-54 | 182 |
| Msa0381010 | AT1G27740.1 | 61.486 | 148 | 40 | 3 | 162 | 308 | 121 | 252 | 3.59e-53 | 175 |
| Msa0381010 | AT2G14760.3 | 47.391 | 230 | 74 | 7 | 109 | 307 | 121 | 334 | 1.27e-52 | 176 |
| Msa0381010 | AT5G43175.1 | 57.931 | 145 | 52 | 3 | 165 | 308 | 81 | 217 | 9.65e-46 | 155 |
| Msa0381010 | AT5G37800.1 | 61.039 | 77 | 29 | 1 | 216 | 291 | 193 | 269 | 1.31e-23 | 99.0 |
| Msa0381010 | AT1G66470.1 | 52.809 | 89 | 42 | 0 | 203 | 291 | 175 | 263 | 2.46e-23 | 97.8 |
| Msa0381010 | AT2G24260.2 | 51.613 | 93 | 43 | 1 | 207 | 297 | 17 | 109 | 1.25e-21 | 92.0 |
| Msa0381010 | AT4G30980.1 | 47.573 | 103 | 47 | 2 | 189 | 290 | 101 | 197 | 3.38e-21 | 92.4 |
| Msa0381010 | AT4G30980.2 | 47.573 | 103 | 47 | 2 | 189 | 290 | 149 | 245 | 4.28e-21 | 92.8 |
| Msa0381010 | AT2G24260.1 | 51.613 | 93 | 43 | 1 | 207 | 297 | 120 | 212 | 7.09e-21 | 92.0 |
| Msa0381010 | AT5G58010.1 | 48.352 | 91 | 43 | 2 | 222 | 308 | 98 | 188 | 9.87e-19 | 85.1 |
| Msa0381010 | AT3G21330.1 | 52.381 | 63 | 30 | 0 | 223 | 285 | 269 | 331 | 2.70e-15 | 76.3 |
| Msa0381010 | AT5G50915.3 | 35.196 | 179 | 76 | 7 | 170 | 314 | 57 | 229 | 1.05e-14 | 73.2 |
| Msa0381010 | AT5G50915.4 | 35.196 | 179 | 76 | 7 | 170 | 314 | 57 | 229 | 1.05e-14 | 73.2 |
| Msa0381010 | AT5G50915.1 | 35.196 | 179 | 76 | 7 | 170 | 314 | 57 | 229 | 1.09e-14 | 73.6 |
| Msa0381010 | AT5G50915.2 | 35.196 | 179 | 76 | 7 | 170 | 314 | 57 | 229 | 1.09e-14 | 73.6 |
| Msa0381010 | AT5G01305.1 | 49.180 | 61 | 31 | 0 | 222 | 282 | 36 | 96 | 1.38e-14 | 70.9 |
| Msa0381010 | AT4G00120.1 | 50.000 | 54 | 27 | 0 | 232 | 285 | 121 | 174 | 3.42e-14 | 70.5 |
| Msa0381010 | AT1G25330.1 | 50.617 | 81 | 39 | 1 | 224 | 303 | 105 | 185 | 4.72e-13 | 67.8 |
| Msa0381010 | AT1G09530.3 | 37.895 | 95 | 53 | 1 | 201 | 295 | 321 | 409 | 6.36e-13 | 69.7 |
| Msa0381010 | AT1G09530.2 | 37.895 | 95 | 53 | 1 | 201 | 295 | 321 | 409 | 6.36e-13 | 69.7 |
| Msa0381010 | AT1G09530.5 | 37.895 | 95 | 53 | 1 | 201 | 295 | 321 | 409 | 6.36e-13 | 69.7 |
| Msa0381010 | AT1G09530.1 | 37.895 | 95 | 53 | 1 | 201 | 295 | 321 | 409 | 6.36e-13 | 69.7 |
| Msa0381010 | AT1G09530.4 | 37.895 | 95 | 53 | 1 | 201 | 295 | 321 | 409 | 6.36e-13 | 69.7 |
| Msa0381010 | AT1G09530.6 | 37.895 | 95 | 53 | 1 | 201 | 295 | 321 | 409 | 6.36e-13 | 69.7 |
| Msa0381010 | AT4G00050.2 | 39.423 | 104 | 51 | 3 | 183 | 286 | 77 | 168 | 1.11e-12 | 67.8 |
| Msa0381010 | AT1G51140.1 | 53.846 | 65 | 29 | 1 | 222 | 285 | 303 | 367 | 1.14e-12 | 68.6 |
| Msa0381010 | AT1G18400.2 | 54.688 | 64 | 28 | 1 | 224 | 286 | 146 | 209 | 1.67e-12 | 66.6 |
| Msa0381010 | AT5G67110.1 | 41.000 | 100 | 45 | 3 | 219 | 316 | 81 | 168 | 1.95e-12 | 65.9 |
| Msa0381010 | AT1G18400.1 | 54.688 | 64 | 28 | 1 | 224 | 286 | 146 | 209 | 2.30e-12 | 66.6 |
| Msa0381010 | AT4G00050.3 | 39.423 | 104 | 51 | 3 | 183 | 286 | 179 | 270 | 2.57e-12 | 67.4 |
| Msa0381010 | AT4G00050.1 | 39.423 | 104 | 51 | 3 | 183 | 286 | 179 | 270 | 2.63e-12 | 67.4 |
| Msa0381010 | AT4G09180.1 | 48.529 | 68 | 34 | 1 | 222 | 288 | 183 | 250 | 4.90e-12 | 65.5 |
| Msa0381010 | AT1G35460.1 | 50.000 | 66 | 32 | 1 | 222 | 286 | 180 | 245 | 8.40e-12 | 64.7 |
| Msa0381010 | AT4G28790.1 | 45.946 | 74 | 39 | 1 | 227 | 300 | 275 | 347 | 1.25e-11 | 65.5 |
| Msa0381010 | AT1G73830.2 | 51.562 | 64 | 30 | 1 | 224 | 286 | 148 | 211 | 1.30e-11 | 64.3 |
| Msa0381010 | AT2G20180.7 | 37.363 | 91 | 52 | 1 | 196 | 286 | 185 | 270 | 1.30e-11 | 65.5 |
| Msa0381010 | AT2G20180.1 | 37.363 | 91 | 52 | 1 | 196 | 286 | 185 | 270 | 1.30e-11 | 65.5 |
| Msa0381010 | AT2G20180.5 | 37.363 | 91 | 52 | 1 | 196 | 286 | 185 | 270 | 1.30e-11 | 65.5 |
| Msa0381010 | AT2G20180.4 | 37.363 | 91 | 52 | 1 | 196 | 286 | 256 | 341 | 1.33e-11 | 65.5 |
| Msa0381010 | AT2G20180.6 | 37.363 | 91 | 52 | 1 | 196 | 286 | 256 | 341 | 1.33e-11 | 65.5 |
| Msa0381010 | AT2G20180.2 | 37.363 | 91 | 52 | 1 | 196 | 286 | 256 | 341 | 1.33e-11 | 65.5 |
| Msa0381010 | AT2G20180.3 | 37.363 | 91 | 52 | 1 | 196 | 286 | 256 | 341 | 1.33e-11 | 65.5 |
| Msa0381010 | AT4G28815.2 | 38.776 | 98 | 55 | 2 | 206 | 298 | 47 | 144 | 1.37e-11 | 63.9 |
| Msa0381010 | AT1G73830.1 | 51.562 | 64 | 30 | 1 | 224 | 286 | 148 | 211 | 1.38e-11 | 64.3 |
| Msa0381010 | AT4G36930.1 | 36.047 | 86 | 54 | 1 | 230 | 315 | 198 | 282 | 1.55e-11 | 65.1 |
| Msa0381010 | AT2G46970.2 | 31.356 | 118 | 75 | 2 | 195 | 307 | 165 | 281 | 1.73e-11 | 64.7 |
| Msa0381010 | AT2G46970.3 | 31.356 | 118 | 75 | 2 | 195 | 307 | 174 | 290 | 1.78e-11 | 64.7 |
| Msa0381010 | AT2G46970.1 | 31.356 | 118 | 75 | 2 | 195 | 307 | 196 | 312 | 1.80e-11 | 65.1 |
| Msa0381010 | AT2G18300.2 | 36.434 | 129 | 73 | 3 | 159 | 286 | 129 | 249 | 2.07e-11 | 64.3 |
| Msa0381010 | AT4G28815.1 | 38.776 | 98 | 55 | 2 | 206 | 298 | 123 | 220 | 2.14e-11 | 64.3 |
| Msa0381010 | AT2G18300.1 | 36.434 | 129 | 73 | 3 | 159 | 286 | 129 | 249 | 2.23e-11 | 64.3 |
| Msa0381010 | AT1G68920.3 | 32.237 | 152 | 101 | 2 | 136 | 286 | 216 | 366 | 2.59e-11 | 64.7 |
| Msa0381010 | AT2G18300.3 | 36.434 | 129 | 73 | 3 | 159 | 286 | 129 | 249 | 2.85e-11 | 64.3 |
| Msa0381010 | AT3G07340.1 | 53.125 | 64 | 29 | 1 | 224 | 286 | 259 | 322 | 3.11e-11 | 64.3 |
| Msa0381010 | AT3G07340.2 | 53.125 | 64 | 29 | 1 | 224 | 286 | 259 | 322 | 3.41e-11 | 64.3 |
| Msa0381010 | AT2G42280.1 | 52.308 | 65 | 30 | 1 | 222 | 285 | 278 | 342 | 3.90e-11 | 63.5 |
| Msa0381010 | AT1G26260.3 | 53.125 | 64 | 29 | 1 | 224 | 286 | 173 | 236 | 4.07e-11 | 63.5 |
| Msa0381010 | AT5G48560.1 | 53.125 | 64 | 29 | 1 | 224 | 286 | 302 | 365 | 4.27e-11 | 63.9 |
| Msa0381010 | AT1G26260.4 | 53.125 | 64 | 29 | 1 | 224 | 286 | 224 | 287 | 4.40e-11 | 63.5 |
| Msa0381010 | AT1G26260.1 | 53.125 | 64 | 29 | 1 | 224 | 286 | 224 | 287 | 4.40e-11 | 63.5 |
| Msa0381010 | AT1G26260.6 | 53.125 | 64 | 29 | 1 | 224 | 286 | 224 | 287 | 4.40e-11 | 63.5 |
| Msa0381010 | AT1G26260.2 | 53.125 | 64 | 29 | 1 | 224 | 286 | 224 | 287 | 4.40e-11 | 63.5 |
| Msa0381010 | AT1G26260.5 | 53.125 | 64 | 29 | 1 | 224 | 286 | 202 | 265 | 4.58e-11 | 63.5 |
| Msa0381010 | AT5G48560.2 | 53.125 | 64 | 29 | 1 | 224 | 286 | 302 | 365 | 4.60e-11 | 63.9 |
| Msa0381010 | AT1G59640.1 | 50.000 | 64 | 31 | 1 | 224 | 286 | 137 | 200 | 5.29e-11 | 62.4 |
| Msa0381010 | AT1G10120.2 | 51.562 | 64 | 30 | 1 | 224 | 286 | 207 | 270 | 5.32e-11 | 63.2 |
| Msa0381010 | AT1G10120.1 | 51.562 | 64 | 30 | 1 | 224 | 286 | 207 | 270 | 5.32e-11 | 63.2 |
| Msa0381010 | AT2G20180.8 | 37.079 | 89 | 51 | 1 | 196 | 284 | 256 | 339 | 6.73e-11 | 62.8 |
| Msa0381010 | AT4G34530.1 | 51.562 | 64 | 30 | 1 | 224 | 286 | 173 | 236 | 7.99e-11 | 62.8 |
| Msa0381010 | AT3G23690.1 | 50.000 | 64 | 31 | 1 | 224 | 286 | 192 | 255 | 9.82e-11 | 62.4 |
Find 55 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAACCTTCTTGCTCTTCT+TGG | 0.125181 | 3_1:+82935028 | None:intergenic |
| GCTTGATGTGCCAGAATTTC+AGG | 0.228928 | 3_1:-82935318 | Msa0381010:CDS |
| GCTGCAGAAATTTCACATAT+TGG | 0.264015 | 3_1:+82934382 | None:intergenic |
| ACTCATATATTACCTTGATT+TGG | 0.291701 | 3_1:+82934358 | None:intergenic |
| TCTACATGCACCTGAAATTC+TGG | 0.295024 | 3_1:+82935308 | None:intergenic |
| TAAATTACCTTTGTCCCATT+TGG | 0.321779 | 3_1:+82934528 | None:intergenic |
| TATGCGCCAATTGCTTATAA+TGG | 0.346115 | 3_1:-82934198 | Msa0381010:CDS |
| CTTCTGCTTGGAGAAAATAA+TGG | 0.350452 | 3_1:-82935581 | Msa0381010:CDS |
| CTACAAAATCTTGTACCAAA+TGG | 0.385534 | 3_1:-82934543 | Msa0381010:CDS |
| CATTCCCATTCGCCATCATC+AGG | 0.393250 | 3_1:+82935671 | None:intergenic |
| ACCCTTGCATAGAGGCTTTG+AGG | 0.393741 | 3_1:+82934822 | None:intergenic |
| TACAAAATCTTGTACCAAAT+GGG | 0.416760 | 3_1:-82934542 | Msa0381010:CDS |
| GGAGAAAATAATGGGAACTT+TGG | 0.422902 | 3_1:-82935572 | Msa0381010:CDS |
| GAAGCCAATGCAAGTGTAGA+TGG | 0.429354 | 3_1:-82934984 | Msa0381010:CDS |
| TTCTGCTTGGAGAAAATAAT+GGG | 0.435352 | 3_1:-82935580 | Msa0381010:CDS |
| ACATTGGATTCAATCTCAAC+AGG | 0.435704 | 3_1:-82934170 | Msa0381010:CDS |
| TCAAGTCCATTATAAGCAAT+TGG | 0.441871 | 3_1:+82934192 | None:intergenic |
| AACCTAAGTTGAAGCTGAAA+AGG | 0.448825 | 3_1:-82935343 | Msa0381010:CDS |
| TTGCTCCCCTTCTGAAGCTG+AGG | 0.486357 | 3_1:-82935534 | Msa0381010:CDS |
| TTCCTCTGAGGTATAACCAC+TGG | 0.491898 | 3_1:+82934953 | None:intergenic |
| GATCAAACCTCGCTTCTGCT+TGG | 0.495958 | 3_1:-82935593 | Msa0381010:CDS |
| GCTTATAATGGACTTGACAT+TGG | 0.507048 | 3_1:-82934186 | Msa0381010:CDS |
| ATTTCTGCAGCTCCAAATCA+AGG | 0.513225 | 3_1:-82934370 | Msa0381010:intron |
| TATCCCTGATGATGGCGAAT+GGG | 0.522217 | 3_1:-82935675 | Msa0381010:CDS |
| ATCCTCAAAGCCTCTATGCA+AGG | 0.540493 | 3_1:-82934824 | Msa0381010:CDS |
| ATGTTTCCCTCAGCTTCAGA+AGG | 0.542520 | 3_1:+82935527 | None:intergenic |
| CTTGGAGCTATCCCTGATGA+TGG | 0.545545 | 3_1:-82935683 | Msa0381010:CDS |
| TGCTCCCCTTCTGAAGCTGA+GGG | 0.548801 | 3_1:-82935533 | Msa0381010:CDS |
| AAGATAAGATAAACTCATGT+GGG | 0.556515 | 3_1:-82935286 | Msa0381010:CDS |
| ACTGTGTCTCTCAACTCCAA+TGG | 0.558276 | 3_1:-82934879 | Msa0381010:CDS |
| GAAAGTAATCATAATACTCA+AGG | 0.561375 | 3_1:-82935452 | Msa0381010:CDS |
| ATGTCCATCTACACTTGCAT+TGG | 0.565311 | 3_1:+82934980 | None:intergenic |
| TGATAATTACCCTTGCATAG+AGG | 0.574539 | 3_1:+82934814 | None:intergenic |
| TGTTTCCCTCAGCTTCAGAA+GGG | 0.575825 | 3_1:+82935528 | None:intergenic |
| CTATCCCTGATGATGGCGAA+TGG | 0.588808 | 3_1:-82935676 | Msa0381010:CDS |
| GAAGATAAGATAAACTCATG+TGG | 0.590178 | 3_1:-82935287 | Msa0381010:CDS |
| ATTGTGGTGGAGAGTCATCA+TGG | 0.590276 | 3_1:+82935621 | None:intergenic |
| TCCTCAAAGCCTCTATGCAA+GGG | 0.593714 | 3_1:-82934823 | Msa0381010:intron |
| TTCAGAAGGGGAGCAAAACA+TGG | 0.599755 | 3_1:+82935541 | None:intergenic |
| TCTTGTACCAAATGGGACAA+AGG | 0.600952 | 3_1:-82934535 | Msa0381010:intron |
| GGTTGATAGAAATGAGAACA+AGG | 0.615117 | 3_1:-82935012 | Msa0381010:CDS |
| GTTTCCCTCAGCTTCAGAAG+GGG | 0.626059 | 3_1:+82935529 | None:intergenic |
| GGAAAGAAAAGAGCTAGTAG+AGG | 0.626774 | 3_1:-82934858 | Msa0381010:CDS |
| TTCTAAGCTCTGATGATCTG+TGG | 0.632585 | 3_1:-82934224 | Msa0381010:CDS |
| GAGGTTTGATCAAGTAATTG+TGG | 0.634212 | 3_1:+82935605 | None:intergenic |
| AGAGTCCAAGAAGAGCAAGA+AGG | 0.635660 | 3_1:-82935033 | Msa0381010:CDS |
| GTTTGATCAAGTAATTGTGG+TGG | 0.639569 | 3_1:+82935608 | None:intergenic |
| ATTCCCATTCGCCATCATCA+GGG | 0.639610 | 3_1:+82935672 | None:intergenic |
| CTTCAGTTGCAAATATTCTG+CGG | 0.648235 | 3_1:+82935645 | None:intergenic |
| CTCTGAGGTATAACCACTGG+AGG | 0.652022 | 3_1:+82934956 | None:intergenic |
| CTCCAGTGGTTATACCTCAG+AGG | 0.674227 | 3_1:-82934955 | Msa0381010:CDS |
| AGAGGAACAAAACATGTGTG+AGG | 0.675741 | 3_1:-82934937 | Msa0381010:CDS |
| GTAGATGGACATACCTCCAG+TGG | 0.708485 | 3_1:-82934969 | Msa0381010:CDS |
| ATGTGTGAGGAAAACAGTGG+AGG | 0.712518 | 3_1:-82934924 | Msa0381010:CDS |
| AACATGTGTGAGGAAAACAG+TGG | 0.790408 | 3_1:-82934927 | Msa0381010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATGATTTGAAATTTTG+TGG | - | chr3_1:82934746-82934765 | Msa0381010:intron | 15.0% |
| !!! | AATAATGATTTGAAATTTTG+TGG | - | chr3_1:82934746-82934765 | Msa0381010:intron | 15.0% |
| !! | ATCATTATTGCTAATTAAAG+TGG | + | chr3_1:82934735-82934754 | None:intergenic | 20.0% |
| !!! | TTTGAATTTTACAGAAAAGA+AGG | - | chr3_1:82935245-82935264 | Msa0381010:intron | 20.0% |
| !!! | TTGAATTTTACAGAAAAGAA+GGG | - | chr3_1:82935246-82935265 | Msa0381010:intron | 20.0% |
| !!! | ATGAATGTTTTGCATTTTAA+AGG | - | chr3_1:82935340-82935359 | Msa0381010:CDS | 20.0% |
| !!! | TGAATGTTTTGCATTTTAAA+GGG | - | chr3_1:82935341-82935360 | Msa0381010:CDS | 20.0% |
| !! | GAGATGTATAATTTGATATA+TGG | - | chr3_1:82935387-82935406 | Msa0381010:CDS | 20.0% |
| !! | TGTATAATTTGATATATGGA+TGG | - | chr3_1:82935391-82935410 | Msa0381010:CDS | 20.0% |
| !! | ATTTCTGTTTAGAAATATCA+AGG | - | chr3_1:82935529-82935548 | Msa0381010:CDS | 20.0% |
| !! | ATCATTATTGCTAATTAAAG+TGG | + | chr3_1:82934735-82934754 | None:intergenic | 20.0% |
| !!! | TTTGAATTTTACAGAAAAGA+AGG | - | chr3_1:82935245-82935264 | Msa0381010:intron | 20.0% |
| !!! | TTGAATTTTACAGAAAAGAA+GGG | - | chr3_1:82935246-82935265 | Msa0381010:intron | 20.0% |
| !!! | ATGAATGTTTTGCATTTTAA+AGG | - | chr3_1:82935340-82935359 | Msa0381010:CDS | 20.0% |
| !!! | TGAATGTTTTGCATTTTAAA+GGG | - | chr3_1:82935341-82935360 | Msa0381010:CDS | 20.0% |
| !! | GAGATGTATAATTTGATATA+TGG | - | chr3_1:82935387-82935406 | Msa0381010:CDS | 20.0% |
| !! | TGTATAATTTGATATATGGA+TGG | - | chr3_1:82935391-82935410 | Msa0381010:CDS | 20.0% |
| !! | ATTTCTGTTTAGAAATATCA+AGG | - | chr3_1:82935529-82935548 | Msa0381010:CDS | 20.0% |
| ! | GAAAGTAATCATAATACTCA+AGG | - | chr3_1:82934386-82934405 | Msa0381010:CDS | 25.0% |
| ! | AAGATAAGATAAACTCATGT+GGG | - | chr3_1:82934552-82934571 | Msa0381010:CDS | 25.0% |
| ! | TAATAAATTTGTCAGCTTAG+CGG | - | chr3_1:82934658-82934677 | Msa0381010:intron | 25.0% |
| !! | TTGACATTTTGTAATCTCAA+AGG | - | chr3_1:82934689-82934708 | Msa0381010:intron | 25.0% |
| ! | AAGAGGAATAGTAAAACAAA+AGG | + | chr3_1:82935068-82935087 | None:intergenic | 25.0% |
| ! | TACAAAATCTTGTACCAAAT+GGG | - | chr3_1:82935296-82935315 | Msa0381010:CDS | 25.0% |
| !!! | GAATGTTTTGCATTTTAAAG+GGG | - | chr3_1:82935342-82935361 | Msa0381010:CDS | 25.0% |
| !!! | AATGTTTTGCATTTTAAAGG+GGG | - | chr3_1:82935343-82935362 | Msa0381010:CDS | 25.0% |
| ! | ACTCATATATTACCTTGATT+TGG | + | chr3_1:82935483-82935502 | None:intergenic | 25.0% |
| ! | GAAAGTAATCATAATACTCA+AGG | - | chr3_1:82934386-82934405 | Msa0381010:CDS | 25.0% |
| ! | AAGATAAGATAAACTCATGT+GGG | - | chr3_1:82934552-82934571 | Msa0381010:CDS | 25.0% |
| ! | TAATAAATTTGTCAGCTTAG+CGG | - | chr3_1:82934658-82934677 | Msa0381010:intron | 25.0% |
| !! | TTGACATTTTGTAATCTCAA+AGG | - | chr3_1:82934689-82934708 | Msa0381010:intron | 25.0% |
| ! | AAGAGGAATAGTAAAACAAA+AGG | + | chr3_1:82935068-82935087 | None:intergenic | 25.0% |
| ! | TACAAAATCTTGTACCAAAT+GGG | - | chr3_1:82935296-82935315 | Msa0381010:CDS | 25.0% |
| !!! | GAATGTTTTGCATTTTAAAG+GGG | - | chr3_1:82935342-82935361 | Msa0381010:CDS | 25.0% |
| !!! | AATGTTTTGCATTTTAAAGG+GGG | - | chr3_1:82935343-82935362 | Msa0381010:CDS | 25.0% |
| ! | ACTCATATATTACCTTGATT+TGG | + | chr3_1:82935483-82935502 | None:intergenic | 25.0% |
| TTCTGCTTGGAGAAAATAAT+GGG | - | chr3_1:82934258-82934277 | Msa0381010:intron | 30.0% | |
| GAAGATAAGATAAACTCATG+TGG | - | chr3_1:82934551-82934570 | Msa0381010:CDS | 30.0% | |
| CTGACAAATTTATTAACCGA+TGG | + | chr3_1:82934653-82934672 | None:intergenic | 30.0% | |
| ATTGCTAATTAAAGTGGTAC+TGG | + | chr3_1:82934729-82934748 | None:intergenic | 30.0% | |
| ! | ATTTTGTGGTTTCCAAATTC+AGG | - | chr3_1:82934760-82934779 | Msa0381010:intron | 30.0% |
| ACAGAATGGAGATTAAAAAG+AGG | + | chr3_1:82935085-82935104 | None:intergenic | 30.0% | |
| TGCTATATACTTCATTCACT+TGG | + | chr3_1:82935202-82935221 | None:intergenic | 30.0% | |
| CTACAAAATCTTGTACCAAA+TGG | - | chr3_1:82935295-82935314 | Msa0381010:CDS | 30.0% | |
| TAAATTACCTTTGTCCCATT+TGG | + | chr3_1:82935313-82935332 | None:intergenic | 30.0% | |
| ! | GGGACAAAGGTAATTTATTT+TGG | - | chr3_1:82935316-82935335 | Msa0381010:CDS | 30.0% |
| TCAAGTCCATTATAAGCAAT+TGG | + | chr3_1:82935649-82935668 | None:intergenic | 30.0% | |
| TTCTGCTTGGAGAAAATAAT+GGG | - | chr3_1:82934258-82934277 | Msa0381010:intron | 30.0% | |
| GAAGATAAGATAAACTCATG+TGG | - | chr3_1:82934551-82934570 | Msa0381010:CDS | 30.0% | |
| CTGACAAATTTATTAACCGA+TGG | + | chr3_1:82934653-82934672 | None:intergenic | 30.0% | |
| ATTGCTAATTAAAGTGGTAC+TGG | + | chr3_1:82934729-82934748 | None:intergenic | 30.0% | |
| ! | ATTTTGTGGTTTCCAAATTC+AGG | - | chr3_1:82934760-82934779 | Msa0381010:intron | 30.0% |
| ACAGAATGGAGATTAAAAAG+AGG | + | chr3_1:82935085-82935104 | None:intergenic | 30.0% | |
| TGCTATATACTTCATTCACT+TGG | + | chr3_1:82935202-82935221 | None:intergenic | 30.0% | |
| CTACAAAATCTTGTACCAAA+TGG | - | chr3_1:82935295-82935314 | Msa0381010:CDS | 30.0% | |
| TAAATTACCTTTGTCCCATT+TGG | + | chr3_1:82935313-82935332 | None:intergenic | 30.0% | |
| ! | GGGACAAAGGTAATTTATTT+TGG | - | chr3_1:82935316-82935335 | Msa0381010:CDS | 30.0% |
| TCAAGTCCATTATAAGCAAT+TGG | + | chr3_1:82935649-82935668 | None:intergenic | 30.0% | |
| CTTCAGTTGCAAATATTCTG+CGG | + | chr3_1:82934196-82934215 | None:intergenic | 35.0% | |
| GTTTGATCAAGTAATTGTGG+TGG | + | chr3_1:82934233-82934252 | None:intergenic | 35.0% | |
| GAGGTTTGATCAAGTAATTG+TGG | + | chr3_1:82934236-82934255 | None:intergenic | 35.0% | |
| CTTCTGCTTGGAGAAAATAA+TGG | - | chr3_1:82934257-82934276 | Msa0381010:intron | 35.0% | |
| ! | GGAGAAAATAATGGGAACTT+TGG | - | chr3_1:82934266-82934285 | Msa0381010:intron | 35.0% |
| !! | TTTTGACTGTTCTGATCATG+TGG | - | chr3_1:82934424-82934443 | Msa0381010:intron | 35.0% |
| ! | TTTTCAGCTTCAACTTAGGT+TGG | + | chr3_1:82934496-82934515 | None:intergenic | 35.0% |
| ! | AACCTAAGTTGAAGCTGAAA+AGG | - | chr3_1:82934495-82934514 | Msa0381010:intron | 35.0% |
| ! | ATCCTTTTCAGCTTCAACTT+AGG | + | chr3_1:82934500-82934519 | None:intergenic | 35.0% |
| !! | GGTTGATAGAAATGAGAACA+AGG | - | chr3_1:82934826-82934845 | Msa0381010:CDS | 35.0% |
| !! | ACTAGCTCTTTTCTTTCCAT+TGG | + | chr3_1:82934978-82934997 | None:intergenic | 35.0% |
| TGATAATTACCCTTGCATAG+AGG | + | chr3_1:82935027-82935046 | None:intergenic | 35.0% | |
| TCCTTCCAAAGAAGAAAAGA+AGG | + | chr3_1:82935124-82935143 | None:intergenic | 35.0% | |
| !! | TCTTTTCTTCTTTGGAAGGA+TGG | - | chr3_1:82935124-82935143 | Msa0381010:intron | 35.0% |
| ATATATGGATGGTCATACAC+AGG | - | chr3_1:82935402-82935421 | Msa0381010:CDS | 35.0% | |
| GCTGCAGAAATTTCACATAT+TGG | + | chr3_1:82935459-82935478 | None:intergenic | 35.0% | |
| TATGCGCCAATTGCTTATAA+TGG | - | chr3_1:82935640-82935659 | Msa0381010:CDS | 35.0% | |
| !! | GCTTATAATGGACTTGACAT+TGG | - | chr3_1:82935652-82935671 | Msa0381010:CDS | 35.0% |
| ACATTGGATTCAATCTCAAC+AGG | - | chr3_1:82935668-82935687 | Msa0381010:CDS | 35.0% | |
| CTTCAGTTGCAAATATTCTG+CGG | + | chr3_1:82934196-82934215 | None:intergenic | 35.0% | |
| GTTTGATCAAGTAATTGTGG+TGG | + | chr3_1:82934233-82934252 | None:intergenic | 35.0% | |
| GAGGTTTGATCAAGTAATTG+TGG | + | chr3_1:82934236-82934255 | None:intergenic | 35.0% | |
| CTTCTGCTTGGAGAAAATAA+TGG | - | chr3_1:82934257-82934276 | Msa0381010:intron | 35.0% | |
| ! | GGAGAAAATAATGGGAACTT+TGG | - | chr3_1:82934266-82934285 | Msa0381010:intron | 35.0% |
| !! | TTTTGACTGTTCTGATCATG+TGG | - | chr3_1:82934424-82934443 | Msa0381010:intron | 35.0% |
| ! | TTTTCAGCTTCAACTTAGGT+TGG | + | chr3_1:82934496-82934515 | None:intergenic | 35.0% |
| ! | AACCTAAGTTGAAGCTGAAA+AGG | - | chr3_1:82934495-82934514 | Msa0381010:intron | 35.0% |
| ! | ATCCTTTTCAGCTTCAACTT+AGG | + | chr3_1:82934500-82934519 | None:intergenic | 35.0% |
| !! | GGTTGATAGAAATGAGAACA+AGG | - | chr3_1:82934826-82934845 | Msa0381010:CDS | 35.0% |
| !! | ACTAGCTCTTTTCTTTCCAT+TGG | + | chr3_1:82934978-82934997 | None:intergenic | 35.0% |
| TGATAATTACCCTTGCATAG+AGG | + | chr3_1:82935027-82935046 | None:intergenic | 35.0% | |
| TCCTTCCAAAGAAGAAAAGA+AGG | + | chr3_1:82935124-82935143 | None:intergenic | 35.0% | |
| !! | TCTTTTCTTCTTTGGAAGGA+TGG | - | chr3_1:82935124-82935143 | Msa0381010:intron | 35.0% |
| ATATATGGATGGTCATACAC+AGG | - | chr3_1:82935402-82935421 | Msa0381010:CDS | 35.0% | |
| GCTGCAGAAATTTCACATAT+TGG | + | chr3_1:82935459-82935478 | None:intergenic | 35.0% | |
| TATGCGCCAATTGCTTATAA+TGG | - | chr3_1:82935640-82935659 | Msa0381010:CDS | 35.0% | |
| !! | GCTTATAATGGACTTGACAT+TGG | - | chr3_1:82935652-82935671 | Msa0381010:CDS | 35.0% |
| ACATTGGATTCAATCTCAAC+AGG | - | chr3_1:82935668-82935687 | Msa0381010:CDS | 35.0% | |
| TCTACATGCACCTGAAATTC+TGG | + | chr3_1:82934533-82934552 | None:intergenic | 40.0% | |
| !!! | CAGCACGAGGTTTTTTCTTA+GGG | + | chr3_1:82934580-82934599 | None:intergenic | 40.0% |
| CCATACGATATTCACTCCAT+CGG | - | chr3_1:82934634-82934653 | Msa0381010:intron | 40.0% | |
| TGCATCTTTGCACCTGAATT+TGG | + | chr3_1:82934775-82934794 | None:intergenic | 40.0% | |
| ATCAACCTTCTTGCTCTTCT+TGG | + | chr3_1:82934813-82934832 | None:intergenic | 40.0% | |
| ATGTCCATCTACACTTGCAT+TGG | + | chr3_1:82934861-82934880 | None:intergenic | 40.0% | |
| !! | ACACATGTTTTGTTCCTCTG+AGG | + | chr3_1:82934900-82934919 | None:intergenic | 40.0% |
| AGAGGAACAAAACATGTGTG+AGG | - | chr3_1:82934901-82934920 | Msa0381010:CDS | 40.0% | |
| AACATGTGTGAGGAAAACAG+TGG | - | chr3_1:82934911-82934930 | Msa0381010:CDS | 40.0% | |
| GGAAAGAAAAGAGCTAGTAG+AGG | - | chr3_1:82934980-82934999 | Msa0381010:CDS | 40.0% | |
| ACATGCTATGGTTCACAGAA+TGG | + | chr3_1:82935099-82935118 | None:intergenic | 40.0% | |
| ATTCTGTGAACCATAGCATG+TGG | - | chr3_1:82935098-82935117 | Msa0381010:intron | 40.0% | |
| ! | TGTGGCCTTCTTTTCTTCTT+TGG | - | chr3_1:82935116-82935135 | Msa0381010:intron | 40.0% |
| ! | GCCTTCTTTTCTTCTTTGGA+AGG | - | chr3_1:82935120-82935139 | Msa0381010:intron | 40.0% |
| TCTTGTACCAAATGGGACAA+AGG | - | chr3_1:82935303-82935322 | Msa0381010:CDS | 40.0% | |
| ATTTCTGCAGCTCCAAATCA+AGG | - | chr3_1:82935468-82935487 | Msa0381010:CDS | 40.0% | |
| ! | TTCTAAGCTCTGATGATCTG+TGG | - | chr3_1:82935614-82935633 | Msa0381010:CDS | 40.0% |
| TCTACATGCACCTGAAATTC+TGG | + | chr3_1:82934533-82934552 | None:intergenic | 40.0% | |
| !!! | CAGCACGAGGTTTTTTCTTA+GGG | + | chr3_1:82934580-82934599 | None:intergenic | 40.0% |
| CCATACGATATTCACTCCAT+CGG | - | chr3_1:82934634-82934653 | Msa0381010:intron | 40.0% | |
| TGCATCTTTGCACCTGAATT+TGG | + | chr3_1:82934775-82934794 | None:intergenic | 40.0% | |
| ATCAACCTTCTTGCTCTTCT+TGG | + | chr3_1:82934813-82934832 | None:intergenic | 40.0% | |
| ATGTCCATCTACACTTGCAT+TGG | + | chr3_1:82934861-82934880 | None:intergenic | 40.0% | |
| !! | ACACATGTTTTGTTCCTCTG+AGG | + | chr3_1:82934900-82934919 | None:intergenic | 40.0% |
| AGAGGAACAAAACATGTGTG+AGG | - | chr3_1:82934901-82934920 | Msa0381010:CDS | 40.0% | |
| AACATGTGTGAGGAAAACAG+TGG | - | chr3_1:82934911-82934930 | Msa0381010:CDS | 40.0% | |
| GGAAAGAAAAGAGCTAGTAG+AGG | - | chr3_1:82934980-82934999 | Msa0381010:CDS | 40.0% | |
| ACATGCTATGGTTCACAGAA+TGG | + | chr3_1:82935099-82935118 | None:intergenic | 40.0% | |
| ATTCTGTGAACCATAGCATG+TGG | - | chr3_1:82935098-82935117 | Msa0381010:intron | 40.0% | |
| ! | TGTGGCCTTCTTTTCTTCTT+TGG | - | chr3_1:82935116-82935135 | Msa0381010:intron | 40.0% |
| ! | GCCTTCTTTTCTTCTTTGGA+AGG | - | chr3_1:82935120-82935139 | Msa0381010:intron | 40.0% |
| TCTTGTACCAAATGGGACAA+AGG | - | chr3_1:82935303-82935322 | Msa0381010:CDS | 40.0% | |
| ATTTCTGCAGCTCCAAATCA+AGG | - | chr3_1:82935468-82935487 | Msa0381010:CDS | 40.0% | |
| ! | TTCTAAGCTCTGATGATCTG+TGG | - | chr3_1:82935614-82935633 | Msa0381010:CDS | 40.0% |
| !! | TATCCCTGATGATGGCGAAT+GGG | - | chr3_1:82934163-82934182 | Msa0381010:CDS | 45.0% |
| ATTCCCATTCGCCATCATCA+GGG | + | chr3_1:82934169-82934188 | None:intergenic | 45.0% | |
| ! | ATTGTGGTGGAGAGTCATCA+TGG | + | chr3_1:82934220-82934239 | None:intergenic | 45.0% |
| ! | ATTTTCTCCAAGCAGAAGCG+AGG | + | chr3_1:82934255-82934274 | None:intergenic | 45.0% |
| TTCAGAAGGGGAGCAAAACA+TGG | + | chr3_1:82934300-82934319 | None:intergenic | 45.0% | |
| TGTTTCCCTCAGCTTCAGAA+GGG | + | chr3_1:82934313-82934332 | None:intergenic | 45.0% | |
| ATGTTTCCCTCAGCTTCAGA+AGG | + | chr3_1:82934314-82934333 | None:intergenic | 45.0% | |
| GCTTGATGTGCCAGAATTTC+AGG | - | chr3_1:82934520-82934539 | Msa0381010:intron | 45.0% | |
| !!! | GCAGCACGAGGTTTTTTCTT+AGG | + | chr3_1:82934581-82934600 | None:intergenic | 45.0% |
| ! | CTTACATCTTTTGCAGCACG+AGG | + | chr3_1:82934593-82934612 | None:intergenic | 45.0% |
| CCGATGGAGTGAATATCGTA+TGG | + | chr3_1:82934637-82934656 | None:intergenic | 45.0% | |
| AGAGTCCAAGAAGAGCAAGA+AGG | - | chr3_1:82934805-82934824 | Msa0381010:intron | 45.0% | |
| GAAGCCAATGCAAGTGTAGA+TGG | - | chr3_1:82934854-82934873 | Msa0381010:CDS | 45.0% | |
| !! | TTCCTCTGAGGTATAACCAC+TGG | + | chr3_1:82934888-82934907 | None:intergenic | 45.0% |
| ATGTGTGAGGAAAACAGTGG+AGG | - | chr3_1:82934914-82934933 | Msa0381010:CDS | 45.0% | |
| ACTGTGTCTCTCAACTCCAA+TGG | - | chr3_1:82934959-82934978 | Msa0381010:CDS | 45.0% | |
| ATCCTCAAAGCCTCTATGCA+AGG | - | chr3_1:82935014-82935033 | Msa0381010:CDS | 45.0% | |
| TCCTCAAAGCCTCTATGCAA+GGG | - | chr3_1:82935015-82935034 | Msa0381010:CDS | 45.0% | |
| GAAAAGAAGGCCACATGCTA+TGG | + | chr3_1:82935111-82935130 | None:intergenic | 45.0% | |
| !! | TATCCCTGATGATGGCGAAT+GGG | - | chr3_1:82934163-82934182 | Msa0381010:CDS | 45.0% |
| ATTCCCATTCGCCATCATCA+GGG | + | chr3_1:82934169-82934188 | None:intergenic | 45.0% | |
| ! | ATTGTGGTGGAGAGTCATCA+TGG | + | chr3_1:82934220-82934239 | None:intergenic | 45.0% |
| ! | ATTTTCTCCAAGCAGAAGCG+AGG | + | chr3_1:82934255-82934274 | None:intergenic | 45.0% |
| TTCAGAAGGGGAGCAAAACA+TGG | + | chr3_1:82934300-82934319 | None:intergenic | 45.0% | |
| TGTTTCCCTCAGCTTCAGAA+GGG | + | chr3_1:82934313-82934332 | None:intergenic | 45.0% | |
| ATGTTTCCCTCAGCTTCAGA+AGG | + | chr3_1:82934314-82934333 | None:intergenic | 45.0% | |
| GCTTGATGTGCCAGAATTTC+AGG | - | chr3_1:82934520-82934539 | Msa0381010:intron | 45.0% | |
| !!! | GCAGCACGAGGTTTTTTCTT+AGG | + | chr3_1:82934581-82934600 | None:intergenic | 45.0% |
| ! | CTTACATCTTTTGCAGCACG+AGG | + | chr3_1:82934593-82934612 | None:intergenic | 45.0% |
| CCGATGGAGTGAATATCGTA+TGG | + | chr3_1:82934637-82934656 | None:intergenic | 45.0% | |
| AGAGTCCAAGAAGAGCAAGA+AGG | - | chr3_1:82934805-82934824 | Msa0381010:intron | 45.0% | |
| GAAGCCAATGCAAGTGTAGA+TGG | - | chr3_1:82934854-82934873 | Msa0381010:CDS | 45.0% | |
| !! | TTCCTCTGAGGTATAACCAC+TGG | + | chr3_1:82934888-82934907 | None:intergenic | 45.0% |
| ATGTGTGAGGAAAACAGTGG+AGG | - | chr3_1:82934914-82934933 | Msa0381010:CDS | 45.0% | |
| ACTGTGTCTCTCAACTCCAA+TGG | - | chr3_1:82934959-82934978 | Msa0381010:CDS | 45.0% | |
| ATCCTCAAAGCCTCTATGCA+AGG | - | chr3_1:82935014-82935033 | Msa0381010:CDS | 45.0% | |
| TCCTCAAAGCCTCTATGCAA+GGG | - | chr3_1:82935015-82935034 | Msa0381010:CDS | 45.0% | |
| GAAAAGAAGGCCACATGCTA+TGG | + | chr3_1:82935111-82935130 | None:intergenic | 45.0% | |
| CTTGGAGCTATCCCTGATGA+TGG | - | chr3_1:82934155-82934174 | Msa0381010:CDS | 50.0% | |
| !! | CTATCCCTGATGATGGCGAA+TGG | - | chr3_1:82934162-82934181 | Msa0381010:CDS | 50.0% |
| CATTCCCATTCGCCATCATC+AGG | + | chr3_1:82934170-82934189 | None:intergenic | 50.0% | |
| GATCAAACCTCGCTTCTGCT+TGG | - | chr3_1:82934245-82934264 | Msa0381010:intron | 50.0% | |
| GTTTCCCTCAGCTTCAGAAG+GGG | + | chr3_1:82934312-82934331 | None:intergenic | 50.0% | |
| GTAGATGGACATACCTCCAG+TGG | - | chr3_1:82934869-82934888 | Msa0381010:CDS | 50.0% | |
| !! | CTCTGAGGTATAACCACTGG+AGG | + | chr3_1:82934885-82934904 | None:intergenic | 50.0% |
| CTCCAGTGGTTATACCTCAG+AGG | - | chr3_1:82934883-82934902 | Msa0381010:CDS | 50.0% | |
| ACCCTTGCATAGAGGCTTTG+AGG | + | chr3_1:82935019-82935038 | None:intergenic | 50.0% | |
| AATCTCGCCATGCCATCAAG+GGG | + | chr3_1:82935159-82935178 | None:intergenic | 50.0% | |
| GAATCTCGCCATGCCATCAA+GGG | + | chr3_1:82935160-82935179 | None:intergenic | 50.0% | |
| CTTGGAGCTATCCCTGATGA+TGG | - | chr3_1:82934155-82934174 | Msa0381010:CDS | 50.0% | |
| !! | CTATCCCTGATGATGGCGAA+TGG | - | chr3_1:82934162-82934181 | Msa0381010:CDS | 50.0% |
| CATTCCCATTCGCCATCATC+AGG | + | chr3_1:82934170-82934189 | None:intergenic | 50.0% | |
| GATCAAACCTCGCTTCTGCT+TGG | - | chr3_1:82934245-82934264 | Msa0381010:intron | 50.0% | |
| GTTTCCCTCAGCTTCAGAAG+GGG | + | chr3_1:82934312-82934331 | None:intergenic | 50.0% | |
| GTAGATGGACATACCTCCAG+TGG | - | chr3_1:82934869-82934888 | Msa0381010:CDS | 50.0% | |
| !! | CTCTGAGGTATAACCACTGG+AGG | + | chr3_1:82934885-82934904 | None:intergenic | 50.0% |
| CTCCAGTGGTTATACCTCAG+AGG | - | chr3_1:82934883-82934902 | Msa0381010:CDS | 50.0% | |
| ACCCTTGCATAGAGGCTTTG+AGG | + | chr3_1:82935019-82935038 | None:intergenic | 50.0% | |
| AATCTCGCCATGCCATCAAG+GGG | + | chr3_1:82935159-82935178 | None:intergenic | 50.0% | |
| GAATCTCGCCATGCCATCAA+GGG | + | chr3_1:82935160-82935179 | None:intergenic | 50.0% | |
| !! | TTGCTCCCCTTCTGAAGCTG+AGG | - | chr3_1:82934304-82934323 | Msa0381010:intron | 55.0% |
| !! | TGCTCCCCTTCTGAAGCTGA+GGG | - | chr3_1:82934305-82934324 | Msa0381010:intron | 55.0% |
| TGGTCACACTAGCCCCTTGA+TGG | - | chr3_1:82935144-82935163 | Msa0381010:intron | 55.0% | |
| ! | ACACTAGCCCCTTGATGGCA+TGG | - | chr3_1:82935149-82935168 | Msa0381010:intron | 55.0% |
| CGAATCTCGCCATGCCATCA+AGG | + | chr3_1:82935161-82935180 | None:intergenic | 55.0% | |
| !! | TTGCTCCCCTTCTGAAGCTG+AGG | - | chr3_1:82934304-82934323 | Msa0381010:intron | 55.0% |
| !! | TGCTCCCCTTCTGAAGCTGA+GGG | - | chr3_1:82934305-82934324 | Msa0381010:intron | 55.0% |
| TGGTCACACTAGCCCCTTGA+TGG | - | chr3_1:82935144-82935163 | Msa0381010:intron | 55.0% | |
| ! | ACACTAGCCCCTTGATGGCA+TGG | - | chr3_1:82935149-82935168 | Msa0381010:intron | 55.0% |
| CGAATCTCGCCATGCCATCA+AGG | + | chr3_1:82935161-82935180 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 82934146 | 82935714 | 82934146 | ID=Msa0381010;Name=Msa0381010 |
| chr3_1 | mRNA | 82934146 | 82935714 | 82934146 | ID=Msa0381010-mRNA-1;Parent=Msa0381010;Name=Msa0381010-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|5|0|316 |
| chr3_1 | exon | 82935253 | 82935714 | 82935253 | ID=Msa0381010-mRNA-1:exon:21239;Parent=Msa0381010-mRNA-1 |
| chr3_1 | exon | 82934824 | 82935078 | 82934824 | ID=Msa0381010-mRNA-1:exon:21238;Parent=Msa0381010-mRNA-1 |
| chr3_1 | exon | 82934536 | 82934601 | 82934536 | ID=Msa0381010-mRNA-1:exon:21237;Parent=Msa0381010-mRNA-1 |
| chr3_1 | exon | 82934371 | 82934436 | 82934371 | ID=Msa0381010-mRNA-1:exon:21236;Parent=Msa0381010-mRNA-1 |
| chr3_1 | exon | 82934146 | 82934247 | 82934146 | ID=Msa0381010-mRNA-1:exon:21235;Parent=Msa0381010-mRNA-1 |
| chr3_1 | CDS | 82935253 | 82935714 | 82935253 | ID=Msa0381010-mRNA-1:cds;Parent=Msa0381010-mRNA-1 |
| chr3_1 | CDS | 82934824 | 82935078 | 82934824 | ID=Msa0381010-mRNA-1:cds;Parent=Msa0381010-mRNA-1 |
| chr3_1 | CDS | 82934536 | 82934601 | 82934536 | ID=Msa0381010-mRNA-1:cds;Parent=Msa0381010-mRNA-1 |
| chr3_1 | CDS | 82934371 | 82934436 | 82934371 | ID=Msa0381010-mRNA-1:cds;Parent=Msa0381010-mRNA-1 |
| chr3_1 | CDS | 82934146 | 82934247 | 82934146 | ID=Msa0381010-mRNA-1:cds;Parent=Msa0381010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
