AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0381070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0381070 MtrunA17_Chr3g0134741 89.441 322 27 2 1 316 1 321 0.0 596
Msa0381070 MtrunA17_Chr1g0152651 49.862 363 103 11 1 298 1 349 7.86e-86 262
Msa0381070 MtrunA17_Chr5g0393721 40.361 332 149 14 1 307 1 308 3.65e-55 182
Msa0381070 MtrunA17_Chr1g0207301 51.445 173 63 4 147 308 211 373 4.22e-46 160
Msa0381070 MtrunA17_Chr1g0207311 78.161 87 19 0 222 308 195 281 2.00e-43 150
Msa0381070 MtrunA17_Chr5g0435021 58.571 70 29 0 222 291 217 286 1.54e-22 95.5
Msa0381070 MtrunA17_Chr4g0074161 52.632 76 36 0 222 297 205 280 2.63e-18 84.7
Msa0381070 MtrunA17_Chr8g0384141 60.606 66 25 1 222 287 114 178 1.26e-17 81.3
Msa0381070 MtrunA17_Chr1g0190731 46.341 82 44 0 222 303 192 273 3.98e-16 78.2
Msa0381070 MtrunA17_Chr3g0134001 53.968 63 29 0 223 285 171 233 7.48e-16 76.3
Msa0381070 MtrunA17_Chr7g0243041 54.545 55 25 0 230 284 33 87 7.73e-15 70.9
Msa0381070 MtrunA17_Chr1g0153241 34.167 120 73 2 181 300 49 162 1.03e-13 70.1
Msa0381070 MtrunA17_Chr1g0193321 45.455 66 36 0 221 286 460 525 3.50e-13 70.1
Msa0381070 MtrunA17_Chr4g0014771 53.030 66 30 1 222 286 117 182 9.49e-13 65.9
Msa0381070 MtrunA17_Chr8g0363921 31.847 157 88 5 139 286 69 215 3.06e-12 65.9
Msa0381070 MtrunA17_Chr4g0032951 39.823 113 66 2 175 286 308 419 4.37e-12 66.6
Msa0381070 MtrunA17_Chr1g0182791 43.939 66 37 0 221 286 315 380 4.78e-12 66.6
Msa0381070 MtrunA17_Chr3g0095391 30.822 146 89 2 154 292 233 373 5.02e-12 66.2
Msa0381070 MtrunA17_Chr6g0484271 44.318 88 44 2 204 286 132 219 6.36e-12 65.1
Msa0381070 MtrunA17_Chr1g0174271 54.545 66 29 1 222 286 297 362 1.07e-11 65.1
Msa0381070 MtrunA17_Chr7g0234761 30.526 190 116 5 98 286 207 381 1.10e-11 65.5
Msa0381070 MtrunA17_Chr8g0339091 53.125 64 29 1 224 286 292 355 1.54e-11 65.1
Msa0381070 MtrunA17_Chr5g0402031 42.188 64 37 0 236 299 118 181 1.57e-11 64.3
Msa0381070 MtrunA17_Chr1g0152131 51.562 64 30 1 224 286 261 324 2.19e-11 64.3
Msa0381070 MtrunA17_Chr7g0270871 46.269 67 34 1 220 286 201 265 2.36e-11 63.9
Msa0381070 MtrunA17_Chr5g0415291 44.565 92 42 3 201 286 88 176 2.66e-11 62.8
Msa0381070 MtrunA17_Chr4g0035101 51.562 64 30 1 224 286 144 207 4.17e-11 63.2
Msa0381070 MtrunA17_Chr7g0231461 50.000 60 28 1 226 285 302 359 6.18e-11 63.2
Msa0381070 MtrunA17_Chr3g0144641 51.562 64 30 1 224 286 192 255 6.77e-11 62.8
Msa0381070 MtrunA17_Chr3g0131771 53.125 64 29 1 224 286 148 211 6.79e-11 62.4
Msa0381070 MtrunA17_Chr2g0329041 51.562 64 30 1 222 284 331 394 7.25e-11 62.8
Msa0381070 MtrunA17_Chr5g0421111 51.562 64 30 1 224 286 366 429 7.42e-11 62.8
Msa0381070 MtrunA17_Chr8g0365941 51.562 64 30 1 224 286 306 369 9.30e-11 62.4
Msa0381070 MtrunA17_Chr7g0262691 36.559 93 54 1 191 283 225 312 9.74e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0381070 AT2G14760.1 50.230 217 74 6 109 307 121 321 3.20e-56 185
Msa0381070 AT4G33880.1 59.119 159 62 1 150 305 190 348 1.09e-54 182
Msa0381070 AT1G27740.1 61.486 148 40 3 162 308 121 252 3.59e-53 175
Msa0381070 AT2G14760.3 47.391 230 74 7 109 307 121 334 1.27e-52 176
Msa0381070 AT5G43175.1 57.931 145 52 3 165 308 81 217 9.65e-46 155
Msa0381070 AT5G37800.1 61.039 77 29 1 216 291 193 269 1.31e-23 99.0
Msa0381070 AT1G66470.1 52.809 89 42 0 203 291 175 263 2.46e-23 97.8
Msa0381070 AT2G24260.2 51.613 93 43 1 207 297 17 109 1.25e-21 92.0
Msa0381070 AT4G30980.1 47.573 103 47 2 189 290 101 197 3.38e-21 92.4
Msa0381070 AT4G30980.2 47.573 103 47 2 189 290 149 245 4.28e-21 92.8
Msa0381070 AT2G24260.1 51.613 93 43 1 207 297 120 212 7.09e-21 92.0
Msa0381070 AT5G58010.1 48.352 91 43 2 222 308 98 188 9.87e-19 85.1
Msa0381070 AT3G21330.1 52.381 63 30 0 223 285 269 331 2.70e-15 76.3
Msa0381070 AT5G50915.3 35.196 179 76 7 170 314 57 229 1.05e-14 73.2
Msa0381070 AT5G50915.4 35.196 179 76 7 170 314 57 229 1.05e-14 73.2
Msa0381070 AT5G50915.1 35.196 179 76 7 170 314 57 229 1.09e-14 73.6
Msa0381070 AT5G50915.2 35.196 179 76 7 170 314 57 229 1.09e-14 73.6
Msa0381070 AT5G01305.1 49.180 61 31 0 222 282 36 96 1.38e-14 70.9
Msa0381070 AT4G00120.1 50.000 54 27 0 232 285 121 174 3.42e-14 70.5
Msa0381070 AT1G25330.1 50.617 81 39 1 224 303 105 185 4.72e-13 67.8
Msa0381070 AT1G09530.3 37.895 95 53 1 201 295 321 409 6.36e-13 69.7
Msa0381070 AT1G09530.2 37.895 95 53 1 201 295 321 409 6.36e-13 69.7
Msa0381070 AT1G09530.5 37.895 95 53 1 201 295 321 409 6.36e-13 69.7
Msa0381070 AT1G09530.1 37.895 95 53 1 201 295 321 409 6.36e-13 69.7
Msa0381070 AT1G09530.4 37.895 95 53 1 201 295 321 409 6.36e-13 69.7
Msa0381070 AT1G09530.6 37.895 95 53 1 201 295 321 409 6.36e-13 69.7
Msa0381070 AT4G00050.2 39.423 104 51 3 183 286 77 168 1.11e-12 67.8
Msa0381070 AT1G51140.1 53.846 65 29 1 222 285 303 367 1.14e-12 68.6
Msa0381070 AT1G18400.2 54.688 64 28 1 224 286 146 209 1.67e-12 66.6
Msa0381070 AT5G67110.1 41.000 100 45 3 219 316 81 168 1.95e-12 65.9
Msa0381070 AT1G18400.1 54.688 64 28 1 224 286 146 209 2.30e-12 66.6
Msa0381070 AT4G00050.3 39.423 104 51 3 183 286 179 270 2.57e-12 67.4
Msa0381070 AT4G00050.1 39.423 104 51 3 183 286 179 270 2.63e-12 67.4
Msa0381070 AT4G09180.1 48.529 68 34 1 222 288 183 250 4.90e-12 65.5
Msa0381070 AT1G35460.1 50.000 66 32 1 222 286 180 245 8.40e-12 64.7
Msa0381070 AT4G28790.1 45.946 74 39 1 227 300 275 347 1.25e-11 65.5
Msa0381070 AT1G73830.2 51.562 64 30 1 224 286 148 211 1.30e-11 64.3
Msa0381070 AT2G20180.7 37.363 91 52 1 196 286 185 270 1.30e-11 65.5
Msa0381070 AT2G20180.1 37.363 91 52 1 196 286 185 270 1.30e-11 65.5
Msa0381070 AT2G20180.5 37.363 91 52 1 196 286 185 270 1.30e-11 65.5
Msa0381070 AT2G20180.4 37.363 91 52 1 196 286 256 341 1.33e-11 65.5
Msa0381070 AT2G20180.6 37.363 91 52 1 196 286 256 341 1.33e-11 65.5
Msa0381070 AT2G20180.2 37.363 91 52 1 196 286 256 341 1.33e-11 65.5
Msa0381070 AT2G20180.3 37.363 91 52 1 196 286 256 341 1.33e-11 65.5
Msa0381070 AT4G28815.2 38.776 98 55 2 206 298 47 144 1.37e-11 63.9
Msa0381070 AT1G73830.1 51.562 64 30 1 224 286 148 211 1.38e-11 64.3
Msa0381070 AT4G36930.1 36.047 86 54 1 230 315 198 282 1.55e-11 65.1
Msa0381070 AT2G46970.2 31.356 118 75 2 195 307 165 281 1.73e-11 64.7
Msa0381070 AT2G46970.3 31.356 118 75 2 195 307 174 290 1.78e-11 64.7
Msa0381070 AT2G46970.1 31.356 118 75 2 195 307 196 312 1.80e-11 65.1
Msa0381070 AT2G18300.2 36.434 129 73 3 159 286 129 249 2.07e-11 64.3
Msa0381070 AT4G28815.1 38.776 98 55 2 206 298 123 220 2.14e-11 64.3
Msa0381070 AT2G18300.1 36.434 129 73 3 159 286 129 249 2.23e-11 64.3
Msa0381070 AT1G68920.3 32.237 152 101 2 136 286 216 366 2.59e-11 64.7
Msa0381070 AT2G18300.3 36.434 129 73 3 159 286 129 249 2.85e-11 64.3
Msa0381070 AT3G07340.1 53.125 64 29 1 224 286 259 322 3.11e-11 64.3
Msa0381070 AT3G07340.2 53.125 64 29 1 224 286 259 322 3.41e-11 64.3
Msa0381070 AT2G42280.1 52.308 65 30 1 222 285 278 342 3.90e-11 63.5
Msa0381070 AT1G26260.3 53.125 64 29 1 224 286 173 236 4.07e-11 63.5
Msa0381070 AT5G48560.1 53.125 64 29 1 224 286 302 365 4.27e-11 63.9
Msa0381070 AT1G26260.4 53.125 64 29 1 224 286 224 287 4.40e-11 63.5
Msa0381070 AT1G26260.1 53.125 64 29 1 224 286 224 287 4.40e-11 63.5
Msa0381070 AT1G26260.6 53.125 64 29 1 224 286 224 287 4.40e-11 63.5
Msa0381070 AT1G26260.2 53.125 64 29 1 224 286 224 287 4.40e-11 63.5
Msa0381070 AT1G26260.5 53.125 64 29 1 224 286 202 265 4.58e-11 63.5
Msa0381070 AT5G48560.2 53.125 64 29 1 224 286 302 365 4.60e-11 63.9
Msa0381070 AT1G59640.1 50.000 64 31 1 224 286 137 200 5.29e-11 62.4
Msa0381070 AT1G10120.2 51.562 64 30 1 224 286 207 270 5.32e-11 63.2
Msa0381070 AT1G10120.1 51.562 64 30 1 224 286 207 270 5.32e-11 63.2
Msa0381070 AT2G20180.8 37.079 89 51 1 196 284 256 339 6.73e-11 62.8
Msa0381070 AT4G34530.1 51.562 64 30 1 224 286 173 236 7.99e-11 62.8
Msa0381070 AT3G23690.1 50.000 64 31 1 224 286 192 255 9.82e-11 62.4

Find 55 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAACCTTCTTGCTCTTCT+TGG 0.125181 3_1:-83052182 None:intergenic
GCTTGATGTGCCAGAATTTC+AGG 0.228928 3_1:+83051892 Msa0381070:CDS
GCTGCAGAAATTTCACATAT+TGG 0.264015 3_1:-83052828 None:intergenic
ACTCATATATTACCTTGATT+TGG 0.291701 3_1:-83052852 None:intergenic
TCTACATGCACCTGAAATTC+TGG 0.295024 3_1:-83051902 None:intergenic
TAAATTACCTTTGTCCCATT+TGG 0.321779 3_1:-83052682 None:intergenic
TATGCGCCAATTGCTTATAA+TGG 0.346115 3_1:+83053012 Msa0381070:CDS
CTTCTGCTTGGAGAAAATAA+TGG 0.350452 3_1:+83051629 Msa0381070:CDS
CTACAAAATCTTGTACCAAA+TGG 0.385534 3_1:+83052667 Msa0381070:CDS
CATTCCCATTCGCCATCATC+AGG 0.393250 3_1:-83051539 None:intergenic
ACCCTTGCATAGAGGCTTTG+AGG 0.393741 3_1:-83052388 None:intergenic
TACAAAATCTTGTACCAAAT+GGG 0.416760 3_1:+83052668 Msa0381070:CDS
GGAGAAAATAATGGGAACTT+TGG 0.422902 3_1:+83051638 Msa0381070:CDS
GAAGCCAATGCAAGTGTAGA+TGG 0.429354 3_1:+83052226 Msa0381070:CDS
TTCTGCTTGGAGAAAATAAT+GGG 0.435352 3_1:+83051630 Msa0381070:CDS
ACATTGGATTCAATCTCAAC+AGG 0.435704 3_1:+83053040 Msa0381070:CDS
TCAAGTCCATTATAAGCAAT+TGG 0.441871 3_1:-83053018 None:intergenic
AACCTAAGTTGAAGCTGAAA+AGG 0.448825 3_1:+83051867 Msa0381070:CDS
TTGCTCCCCTTCTGAAGCTG+AGG 0.486357 3_1:+83051676 Msa0381070:CDS
TTCCTCTGAGGTATAACCAC+TGG 0.491898 3_1:-83052257 None:intergenic
GATCAAACCTCGCTTCTGCT+TGG 0.495958 3_1:+83051617 Msa0381070:CDS
GCTTATAATGGACTTGACAT+TGG 0.507048 3_1:+83053024 Msa0381070:CDS
ATTTCTGCAGCTCCAAATCA+AGG 0.513225 3_1:+83052840 Msa0381070:CDS
TATCCCTGATGATGGCGAAT+GGG 0.522217 3_1:+83051535 Msa0381070:CDS
ATCCTCAAAGCCTCTATGCA+AGG 0.540493 3_1:+83052386 Msa0381070:CDS
ATGTTTCCCTCAGCTTCAGA+AGG 0.542520 3_1:-83051683 None:intergenic
CTTGGAGCTATCCCTGATGA+TGG 0.545545 3_1:+83051527 Msa0381070:CDS
TGCTCCCCTTCTGAAGCTGA+GGG 0.548801 3_1:+83051677 Msa0381070:CDS
AAGATAAGATAAACTCATGT+GGG 0.556515 3_1:+83051924 Msa0381070:CDS
ACTGTGTCTCTCAACTCCAA+TGG 0.558276 3_1:+83052331 Msa0381070:CDS
GAAAGTAATCATAATACTCA+AGG 0.561375 3_1:+83051758 Msa0381070:CDS
ATGTCCATCTACACTTGCAT+TGG 0.565311 3_1:-83052230 None:intergenic
TGATAATTACCCTTGCATAG+AGG 0.574539 3_1:-83052396 None:intergenic
TGTTTCCCTCAGCTTCAGAA+GGG 0.575825 3_1:-83051682 None:intergenic
CTATCCCTGATGATGGCGAA+TGG 0.588808 3_1:+83051534 Msa0381070:CDS
GAAGATAAGATAAACTCATG+TGG 0.590178 3_1:+83051923 Msa0381070:CDS
ATTGTGGTGGAGAGTCATCA+TGG 0.590276 3_1:-83051589 None:intergenic
TCCTCAAAGCCTCTATGCAA+GGG 0.593714 3_1:+83052387 Msa0381070:CDS
TTCAGAAGGGGAGCAAAACA+TGG 0.599755 3_1:-83051669 None:intergenic
TCTTGTACCAAATGGGACAA+AGG 0.600952 3_1:+83052675 Msa0381070:CDS
GGTTGATAGAAATGAGAACA+AGG 0.615117 3_1:+83052198 Msa0381070:CDS
GTTTCCCTCAGCTTCAGAAG+GGG 0.626059 3_1:-83051681 None:intergenic
GGAAAGAAAAGAGCTAGTAG+AGG 0.626774 3_1:+83052352 Msa0381070:CDS
TTCTAAGCTCTGATGATCTG+TGG 0.632585 3_1:+83052986 Msa0381070:CDS
GAGGTTTGATCAAGTAATTG+TGG 0.634212 3_1:-83051605 None:intergenic
AGAGTCCAAGAAGAGCAAGA+AGG 0.635660 3_1:+83052177 Msa0381070:CDS
GTTTGATCAAGTAATTGTGG+TGG 0.639569 3_1:-83051602 None:intergenic
ATTCCCATTCGCCATCATCA+GGG 0.639610 3_1:-83051538 None:intergenic
CTTCAGTTGCAAATATTCTG+CGG 0.648235 3_1:-83051565 None:intergenic
CTCTGAGGTATAACCACTGG+AGG 0.652022 3_1:-83052254 None:intergenic
CTCCAGTGGTTATACCTCAG+AGG 0.674227 3_1:+83052255 Msa0381070:CDS
AGAGGAACAAAACATGTGTG+AGG 0.675741 3_1:+83052273 Msa0381070:CDS
GTAGATGGACATACCTCCAG+TGG 0.708485 3_1:+83052241 Msa0381070:CDS
ATGTGTGAGGAAAACAGTGG+AGG 0.712518 3_1:+83052286 Msa0381070:CDS
AACATGTGTGAGGAAAACAG+TGG 0.790408 3_1:+83052283 Msa0381070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATGATTTGAAATTTTG+TGG + chr3_1:83052118-83052137 Msa0381070:intron 15.0%
!!! AATAATGATTTGAAATTTTG+TGG + chr3_1:83052118-83052137 Msa0381070:intron 15.0%
!! ATCATTATTGCTAATTAAAG+TGG - chr3_1:83052107-83052126 None:intergenic 20.0%
!!! TTTGAATTTTACAGAAAAGA+AGG + chr3_1:83052617-83052636 Msa0381070:intron 20.0%
!!! TTGAATTTTACAGAAAAGAA+GGG + chr3_1:83052618-83052637 Msa0381070:intron 20.0%
!!! ATGAATGTTTTGCATTTTAA+AGG + chr3_1:83052712-83052731 Msa0381070:intron 20.0%
!!! TGAATGTTTTGCATTTTAAA+GGG + chr3_1:83052713-83052732 Msa0381070:intron 20.0%
!! GAGATGTATAATTTGATATA+TGG + chr3_1:83052759-83052778 Msa0381070:intron 20.0%
!! TGTATAATTTGATATATGGA+TGG + chr3_1:83052763-83052782 Msa0381070:intron 20.0%
!! ATTTCTGTTTAGAAATATCA+AGG + chr3_1:83052901-83052920 Msa0381070:intron 20.0%
!! ATCATTATTGCTAATTAAAG+TGG - chr3_1:83052107-83052126 None:intergenic 20.0%
!!! TTTGAATTTTACAGAAAAGA+AGG + chr3_1:83052617-83052636 Msa0381070:intron 20.0%
!!! TTGAATTTTACAGAAAAGAA+GGG + chr3_1:83052618-83052637 Msa0381070:intron 20.0%
!!! ATGAATGTTTTGCATTTTAA+AGG + chr3_1:83052712-83052731 Msa0381070:intron 20.0%
!!! TGAATGTTTTGCATTTTAAA+GGG + chr3_1:83052713-83052732 Msa0381070:intron 20.0%
!! GAGATGTATAATTTGATATA+TGG + chr3_1:83052759-83052778 Msa0381070:intron 20.0%
!! TGTATAATTTGATATATGGA+TGG + chr3_1:83052763-83052782 Msa0381070:intron 20.0%
!! ATTTCTGTTTAGAAATATCA+AGG + chr3_1:83052901-83052920 Msa0381070:intron 20.0%
! GAAAGTAATCATAATACTCA+AGG + chr3_1:83051758-83051777 Msa0381070:CDS 25.0%
! AAGATAAGATAAACTCATGT+GGG + chr3_1:83051924-83051943 Msa0381070:CDS 25.0%
! TAATAAATTTGTCAGCTTAG+CGG + chr3_1:83052030-83052049 Msa0381070:intron 25.0%
!! TTGACATTTTGTAATCTCAA+AGG + chr3_1:83052061-83052080 Msa0381070:intron 25.0%
! AAGAGGAATAGTAAAACAAA+AGG - chr3_1:83052440-83052459 None:intergenic 25.0%
! TACAAAATCTTGTACCAAAT+GGG + chr3_1:83052668-83052687 Msa0381070:CDS 25.0%
!!! GAATGTTTTGCATTTTAAAG+GGG + chr3_1:83052714-83052733 Msa0381070:intron 25.0%
!!! AATGTTTTGCATTTTAAAGG+GGG + chr3_1:83052715-83052734 Msa0381070:intron 25.0%
! ACTCATATATTACCTTGATT+TGG - chr3_1:83052855-83052874 None:intergenic 25.0%
! GAAAGTAATCATAATACTCA+AGG + chr3_1:83051758-83051777 Msa0381070:CDS 25.0%
! AAGATAAGATAAACTCATGT+GGG + chr3_1:83051924-83051943 Msa0381070:CDS 25.0%
! TAATAAATTTGTCAGCTTAG+CGG + chr3_1:83052030-83052049 Msa0381070:intron 25.0%
!! TTGACATTTTGTAATCTCAA+AGG + chr3_1:83052061-83052080 Msa0381070:intron 25.0%
! AAGAGGAATAGTAAAACAAA+AGG - chr3_1:83052440-83052459 None:intergenic 25.0%
! TACAAAATCTTGTACCAAAT+GGG + chr3_1:83052668-83052687 Msa0381070:CDS 25.0%
!!! GAATGTTTTGCATTTTAAAG+GGG + chr3_1:83052714-83052733 Msa0381070:intron 25.0%
!!! AATGTTTTGCATTTTAAAGG+GGG + chr3_1:83052715-83052734 Msa0381070:intron 25.0%
! ACTCATATATTACCTTGATT+TGG - chr3_1:83052855-83052874 None:intergenic 25.0%
TTCTGCTTGGAGAAAATAAT+GGG + chr3_1:83051630-83051649 Msa0381070:CDS 30.0%
GAAGATAAGATAAACTCATG+TGG + chr3_1:83051923-83051942 Msa0381070:CDS 30.0%
CTGACAAATTTATTAACCGA+TGG - chr3_1:83052025-83052044 None:intergenic 30.0%
ATTGCTAATTAAAGTGGTAC+TGG - chr3_1:83052101-83052120 None:intergenic 30.0%
! ATTTTGTGGTTTCCAAATTC+AGG + chr3_1:83052132-83052151 Msa0381070:intron 30.0%
ACAGAATGGAGATTAAAAAG+AGG - chr3_1:83052457-83052476 None:intergenic 30.0%
TGCTATATACTTCATTCACT+TGG - chr3_1:83052574-83052593 None:intergenic 30.0%
CTACAAAATCTTGTACCAAA+TGG + chr3_1:83052667-83052686 Msa0381070:CDS 30.0%
TAAATTACCTTTGTCCCATT+TGG - chr3_1:83052685-83052704 None:intergenic 30.0%
! GGGACAAAGGTAATTTATTT+TGG + chr3_1:83052688-83052707 Msa0381070:intron 30.0%
TCAAGTCCATTATAAGCAAT+TGG - chr3_1:83053021-83053040 None:intergenic 30.0%
TTCTGCTTGGAGAAAATAAT+GGG + chr3_1:83051630-83051649 Msa0381070:CDS 30.0%
GAAGATAAGATAAACTCATG+TGG + chr3_1:83051923-83051942 Msa0381070:CDS 30.0%
CTGACAAATTTATTAACCGA+TGG - chr3_1:83052025-83052044 None:intergenic 30.0%
ATTGCTAATTAAAGTGGTAC+TGG - chr3_1:83052101-83052120 None:intergenic 30.0%
! ATTTTGTGGTTTCCAAATTC+AGG + chr3_1:83052132-83052151 Msa0381070:intron 30.0%
ACAGAATGGAGATTAAAAAG+AGG - chr3_1:83052457-83052476 None:intergenic 30.0%
TGCTATATACTTCATTCACT+TGG - chr3_1:83052574-83052593 None:intergenic 30.0%
CTACAAAATCTTGTACCAAA+TGG + chr3_1:83052667-83052686 Msa0381070:CDS 30.0%
TAAATTACCTTTGTCCCATT+TGG - chr3_1:83052685-83052704 None:intergenic 30.0%
! GGGACAAAGGTAATTTATTT+TGG + chr3_1:83052688-83052707 Msa0381070:intron 30.0%
TCAAGTCCATTATAAGCAAT+TGG - chr3_1:83053021-83053040 None:intergenic 30.0%
CTTCAGTTGCAAATATTCTG+CGG - chr3_1:83051568-83051587 None:intergenic 35.0%
GTTTGATCAAGTAATTGTGG+TGG - chr3_1:83051605-83051624 None:intergenic 35.0%
GAGGTTTGATCAAGTAATTG+TGG - chr3_1:83051608-83051627 None:intergenic 35.0%
CTTCTGCTTGGAGAAAATAA+TGG + chr3_1:83051629-83051648 Msa0381070:CDS 35.0%
! GGAGAAAATAATGGGAACTT+TGG + chr3_1:83051638-83051657 Msa0381070:CDS 35.0%
!! TTTTGACTGTTCTGATCATG+TGG + chr3_1:83051796-83051815 Msa0381070:CDS 35.0%
! TTTTCAGCTTCAACTTAGGT+TGG - chr3_1:83051868-83051887 None:intergenic 35.0%
! AACCTAAGTTGAAGCTGAAA+AGG + chr3_1:83051867-83051886 Msa0381070:CDS 35.0%
! ATCCTTTTCAGCTTCAACTT+AGG - chr3_1:83051872-83051891 None:intergenic 35.0%
!! GGTTGATAGAAATGAGAACA+AGG + chr3_1:83052198-83052217 Msa0381070:CDS 35.0%
!! ACTAGCTCTTTTCTTTCCAT+TGG - chr3_1:83052350-83052369 None:intergenic 35.0%
TGATAATTACCCTTGCATAG+AGG - chr3_1:83052399-83052418 None:intergenic 35.0%
TCCTTCCAAAGAAGAAAAGA+AGG - chr3_1:83052496-83052515 None:intergenic 35.0%
!! TCTTTTCTTCTTTGGAAGGA+TGG + chr3_1:83052496-83052515 Msa0381070:intron 35.0%
ATATATGGATGGTCATACAC+AGG + chr3_1:83052774-83052793 Msa0381070:intron 35.0%
GCTGCAGAAATTTCACATAT+TGG - chr3_1:83052831-83052850 None:intergenic 35.0%
TATGCGCCAATTGCTTATAA+TGG + chr3_1:83053012-83053031 Msa0381070:CDS 35.0%
!! GCTTATAATGGACTTGACAT+TGG + chr3_1:83053024-83053043 Msa0381070:CDS 35.0%
ACATTGGATTCAATCTCAAC+AGG + chr3_1:83053040-83053059 Msa0381070:CDS 35.0%
CTTCAGTTGCAAATATTCTG+CGG - chr3_1:83051568-83051587 None:intergenic 35.0%
GTTTGATCAAGTAATTGTGG+TGG - chr3_1:83051605-83051624 None:intergenic 35.0%
GAGGTTTGATCAAGTAATTG+TGG - chr3_1:83051608-83051627 None:intergenic 35.0%
CTTCTGCTTGGAGAAAATAA+TGG + chr3_1:83051629-83051648 Msa0381070:CDS 35.0%
! GGAGAAAATAATGGGAACTT+TGG + chr3_1:83051638-83051657 Msa0381070:CDS 35.0%
!! TTTTGACTGTTCTGATCATG+TGG + chr3_1:83051796-83051815 Msa0381070:CDS 35.0%
! TTTTCAGCTTCAACTTAGGT+TGG - chr3_1:83051868-83051887 None:intergenic 35.0%
! AACCTAAGTTGAAGCTGAAA+AGG + chr3_1:83051867-83051886 Msa0381070:CDS 35.0%
! ATCCTTTTCAGCTTCAACTT+AGG - chr3_1:83051872-83051891 None:intergenic 35.0%
!! GGTTGATAGAAATGAGAACA+AGG + chr3_1:83052198-83052217 Msa0381070:CDS 35.0%
!! ACTAGCTCTTTTCTTTCCAT+TGG - chr3_1:83052350-83052369 None:intergenic 35.0%
TGATAATTACCCTTGCATAG+AGG - chr3_1:83052399-83052418 None:intergenic 35.0%
TCCTTCCAAAGAAGAAAAGA+AGG - chr3_1:83052496-83052515 None:intergenic 35.0%
!! TCTTTTCTTCTTTGGAAGGA+TGG + chr3_1:83052496-83052515 Msa0381070:intron 35.0%
ATATATGGATGGTCATACAC+AGG + chr3_1:83052774-83052793 Msa0381070:intron 35.0%
GCTGCAGAAATTTCACATAT+TGG - chr3_1:83052831-83052850 None:intergenic 35.0%
TATGCGCCAATTGCTTATAA+TGG + chr3_1:83053012-83053031 Msa0381070:CDS 35.0%
!! GCTTATAATGGACTTGACAT+TGG + chr3_1:83053024-83053043 Msa0381070:CDS 35.0%
ACATTGGATTCAATCTCAAC+AGG + chr3_1:83053040-83053059 Msa0381070:CDS 35.0%
TCTACATGCACCTGAAATTC+TGG - chr3_1:83051905-83051924 None:intergenic 40.0%
!!! CAGCACGAGGTTTTTTCTTA+GGG - chr3_1:83051952-83051971 None:intergenic 40.0%
CCATACGATATTCACTCCAT+CGG + chr3_1:83052006-83052025 Msa0381070:intron 40.0%
TGCATCTTTGCACCTGAATT+TGG - chr3_1:83052147-83052166 None:intergenic 40.0%
ATCAACCTTCTTGCTCTTCT+TGG - chr3_1:83052185-83052204 None:intergenic 40.0%
ATGTCCATCTACACTTGCAT+TGG - chr3_1:83052233-83052252 None:intergenic 40.0%
!! ACACATGTTTTGTTCCTCTG+AGG - chr3_1:83052272-83052291 None:intergenic 40.0%
AGAGGAACAAAACATGTGTG+AGG + chr3_1:83052273-83052292 Msa0381070:CDS 40.0%
AACATGTGTGAGGAAAACAG+TGG + chr3_1:83052283-83052302 Msa0381070:CDS 40.0%
GGAAAGAAAAGAGCTAGTAG+AGG + chr3_1:83052352-83052371 Msa0381070:CDS 40.0%
ACATGCTATGGTTCACAGAA+TGG - chr3_1:83052471-83052490 None:intergenic 40.0%
ATTCTGTGAACCATAGCATG+TGG + chr3_1:83052470-83052489 Msa0381070:intron 40.0%
! TGTGGCCTTCTTTTCTTCTT+TGG + chr3_1:83052488-83052507 Msa0381070:intron 40.0%
! GCCTTCTTTTCTTCTTTGGA+AGG + chr3_1:83052492-83052511 Msa0381070:intron 40.0%
TCTTGTACCAAATGGGACAA+AGG + chr3_1:83052675-83052694 Msa0381070:CDS 40.0%
ATTTCTGCAGCTCCAAATCA+AGG + chr3_1:83052840-83052859 Msa0381070:CDS 40.0%
! TTCTAAGCTCTGATGATCTG+TGG + chr3_1:83052986-83053005 Msa0381070:CDS 40.0%
TCTACATGCACCTGAAATTC+TGG - chr3_1:83051905-83051924 None:intergenic 40.0%
!!! CAGCACGAGGTTTTTTCTTA+GGG - chr3_1:83051952-83051971 None:intergenic 40.0%
CCATACGATATTCACTCCAT+CGG + chr3_1:83052006-83052025 Msa0381070:intron 40.0%
TGCATCTTTGCACCTGAATT+TGG - chr3_1:83052147-83052166 None:intergenic 40.0%
ATCAACCTTCTTGCTCTTCT+TGG - chr3_1:83052185-83052204 None:intergenic 40.0%
ATGTCCATCTACACTTGCAT+TGG - chr3_1:83052233-83052252 None:intergenic 40.0%
!! ACACATGTTTTGTTCCTCTG+AGG - chr3_1:83052272-83052291 None:intergenic 40.0%
AGAGGAACAAAACATGTGTG+AGG + chr3_1:83052273-83052292 Msa0381070:CDS 40.0%
AACATGTGTGAGGAAAACAG+TGG + chr3_1:83052283-83052302 Msa0381070:CDS 40.0%
GGAAAGAAAAGAGCTAGTAG+AGG + chr3_1:83052352-83052371 Msa0381070:CDS 40.0%
ACATGCTATGGTTCACAGAA+TGG - chr3_1:83052471-83052490 None:intergenic 40.0%
ATTCTGTGAACCATAGCATG+TGG + chr3_1:83052470-83052489 Msa0381070:intron 40.0%
! TGTGGCCTTCTTTTCTTCTT+TGG + chr3_1:83052488-83052507 Msa0381070:intron 40.0%
! GCCTTCTTTTCTTCTTTGGA+AGG + chr3_1:83052492-83052511 Msa0381070:intron 40.0%
TCTTGTACCAAATGGGACAA+AGG + chr3_1:83052675-83052694 Msa0381070:CDS 40.0%
ATTTCTGCAGCTCCAAATCA+AGG + chr3_1:83052840-83052859 Msa0381070:CDS 40.0%
! TTCTAAGCTCTGATGATCTG+TGG + chr3_1:83052986-83053005 Msa0381070:CDS 40.0%
!! TATCCCTGATGATGGCGAAT+GGG + chr3_1:83051535-83051554 Msa0381070:CDS 45.0%
ATTCCCATTCGCCATCATCA+GGG - chr3_1:83051541-83051560 None:intergenic 45.0%
! ATTGTGGTGGAGAGTCATCA+TGG - chr3_1:83051592-83051611 None:intergenic 45.0%
! ATTTTCTCCAAGCAGAAGCG+AGG - chr3_1:83051627-83051646 None:intergenic 45.0%
TTCAGAAGGGGAGCAAAACA+TGG - chr3_1:83051672-83051691 None:intergenic 45.0%
TGTTTCCCTCAGCTTCAGAA+GGG - chr3_1:83051685-83051704 None:intergenic 45.0%
ATGTTTCCCTCAGCTTCAGA+AGG - chr3_1:83051686-83051705 None:intergenic 45.0%
GCTTGATGTGCCAGAATTTC+AGG + chr3_1:83051892-83051911 Msa0381070:CDS 45.0%
!!! GCAGCACGAGGTTTTTTCTT+AGG - chr3_1:83051953-83051972 None:intergenic 45.0%
! CTTACATCTTTTGCAGCACG+AGG - chr3_1:83051965-83051984 None:intergenic 45.0%
CCGATGGAGTGAATATCGTA+TGG - chr3_1:83052009-83052028 None:intergenic 45.0%
AGAGTCCAAGAAGAGCAAGA+AGG + chr3_1:83052177-83052196 Msa0381070:CDS 45.0%
GAAGCCAATGCAAGTGTAGA+TGG + chr3_1:83052226-83052245 Msa0381070:CDS 45.0%
!! TTCCTCTGAGGTATAACCAC+TGG - chr3_1:83052260-83052279 None:intergenic 45.0%
ATGTGTGAGGAAAACAGTGG+AGG + chr3_1:83052286-83052305 Msa0381070:CDS 45.0%
ACTGTGTCTCTCAACTCCAA+TGG + chr3_1:83052331-83052350 Msa0381070:CDS 45.0%
ATCCTCAAAGCCTCTATGCA+AGG + chr3_1:83052386-83052405 Msa0381070:CDS 45.0%
TCCTCAAAGCCTCTATGCAA+GGG + chr3_1:83052387-83052406 Msa0381070:CDS 45.0%
GAAAAGAAGGCCACATGCTA+TGG - chr3_1:83052483-83052502 None:intergenic 45.0%
!! TATCCCTGATGATGGCGAAT+GGG + chr3_1:83051535-83051554 Msa0381070:CDS 45.0%
ATTCCCATTCGCCATCATCA+GGG - chr3_1:83051541-83051560 None:intergenic 45.0%
! ATTGTGGTGGAGAGTCATCA+TGG - chr3_1:83051592-83051611 None:intergenic 45.0%
! ATTTTCTCCAAGCAGAAGCG+AGG - chr3_1:83051627-83051646 None:intergenic 45.0%
TTCAGAAGGGGAGCAAAACA+TGG - chr3_1:83051672-83051691 None:intergenic 45.0%
TGTTTCCCTCAGCTTCAGAA+GGG - chr3_1:83051685-83051704 None:intergenic 45.0%
ATGTTTCCCTCAGCTTCAGA+AGG - chr3_1:83051686-83051705 None:intergenic 45.0%
GCTTGATGTGCCAGAATTTC+AGG + chr3_1:83051892-83051911 Msa0381070:CDS 45.0%
!!! GCAGCACGAGGTTTTTTCTT+AGG - chr3_1:83051953-83051972 None:intergenic 45.0%
! CTTACATCTTTTGCAGCACG+AGG - chr3_1:83051965-83051984 None:intergenic 45.0%
CCGATGGAGTGAATATCGTA+TGG - chr3_1:83052009-83052028 None:intergenic 45.0%
AGAGTCCAAGAAGAGCAAGA+AGG + chr3_1:83052177-83052196 Msa0381070:CDS 45.0%
GAAGCCAATGCAAGTGTAGA+TGG + chr3_1:83052226-83052245 Msa0381070:CDS 45.0%
!! TTCCTCTGAGGTATAACCAC+TGG - chr3_1:83052260-83052279 None:intergenic 45.0%
ATGTGTGAGGAAAACAGTGG+AGG + chr3_1:83052286-83052305 Msa0381070:CDS 45.0%
ACTGTGTCTCTCAACTCCAA+TGG + chr3_1:83052331-83052350 Msa0381070:CDS 45.0%
ATCCTCAAAGCCTCTATGCA+AGG + chr3_1:83052386-83052405 Msa0381070:CDS 45.0%
TCCTCAAAGCCTCTATGCAA+GGG + chr3_1:83052387-83052406 Msa0381070:CDS 45.0%
GAAAAGAAGGCCACATGCTA+TGG - chr3_1:83052483-83052502 None:intergenic 45.0%
CTTGGAGCTATCCCTGATGA+TGG + chr3_1:83051527-83051546 Msa0381070:CDS 50.0%
!! CTATCCCTGATGATGGCGAA+TGG + chr3_1:83051534-83051553 Msa0381070:CDS 50.0%
CATTCCCATTCGCCATCATC+AGG - chr3_1:83051542-83051561 None:intergenic 50.0%
GATCAAACCTCGCTTCTGCT+TGG + chr3_1:83051617-83051636 Msa0381070:CDS 50.0%
GTTTCCCTCAGCTTCAGAAG+GGG - chr3_1:83051684-83051703 None:intergenic 50.0%
GTAGATGGACATACCTCCAG+TGG + chr3_1:83052241-83052260 Msa0381070:CDS 50.0%
!! CTCTGAGGTATAACCACTGG+AGG - chr3_1:83052257-83052276 None:intergenic 50.0%
CTCCAGTGGTTATACCTCAG+AGG + chr3_1:83052255-83052274 Msa0381070:CDS 50.0%
ACCCTTGCATAGAGGCTTTG+AGG - chr3_1:83052391-83052410 None:intergenic 50.0%
AATCTCGCCATGCCATCAAG+GGG - chr3_1:83052531-83052550 None:intergenic 50.0%
GAATCTCGCCATGCCATCAA+GGG - chr3_1:83052532-83052551 None:intergenic 50.0%
CTTGGAGCTATCCCTGATGA+TGG + chr3_1:83051527-83051546 Msa0381070:CDS 50.0%
!! CTATCCCTGATGATGGCGAA+TGG + chr3_1:83051534-83051553 Msa0381070:CDS 50.0%
CATTCCCATTCGCCATCATC+AGG - chr3_1:83051542-83051561 None:intergenic 50.0%
GATCAAACCTCGCTTCTGCT+TGG + chr3_1:83051617-83051636 Msa0381070:CDS 50.0%
GTTTCCCTCAGCTTCAGAAG+GGG - chr3_1:83051684-83051703 None:intergenic 50.0%
GTAGATGGACATACCTCCAG+TGG + chr3_1:83052241-83052260 Msa0381070:CDS 50.0%
!! CTCTGAGGTATAACCACTGG+AGG - chr3_1:83052257-83052276 None:intergenic 50.0%
CTCCAGTGGTTATACCTCAG+AGG + chr3_1:83052255-83052274 Msa0381070:CDS 50.0%
ACCCTTGCATAGAGGCTTTG+AGG - chr3_1:83052391-83052410 None:intergenic 50.0%
AATCTCGCCATGCCATCAAG+GGG - chr3_1:83052531-83052550 None:intergenic 50.0%
GAATCTCGCCATGCCATCAA+GGG - chr3_1:83052532-83052551 None:intergenic 50.0%
!! TTGCTCCCCTTCTGAAGCTG+AGG + chr3_1:83051676-83051695 Msa0381070:CDS 55.0%
!! TGCTCCCCTTCTGAAGCTGA+GGG + chr3_1:83051677-83051696 Msa0381070:CDS 55.0%
TGGTCACACTAGCCCCTTGA+TGG + chr3_1:83052516-83052535 Msa0381070:intron 55.0%
! ACACTAGCCCCTTGATGGCA+TGG + chr3_1:83052521-83052540 Msa0381070:intron 55.0%
CGAATCTCGCCATGCCATCA+AGG - chr3_1:83052533-83052552 None:intergenic 55.0%
!! TTGCTCCCCTTCTGAAGCTG+AGG + chr3_1:83051676-83051695 Msa0381070:CDS 55.0%
!! TGCTCCCCTTCTGAAGCTGA+GGG + chr3_1:83051677-83051696 Msa0381070:CDS 55.0%
TGGTCACACTAGCCCCTTGA+TGG + chr3_1:83052516-83052535 Msa0381070:intron 55.0%
! ACACTAGCCCCTTGATGGCA+TGG + chr3_1:83052521-83052540 Msa0381070:intron 55.0%
CGAATCTCGCCATGCCATCA+AGG - chr3_1:83052533-83052552 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 83051518 83053086 83051518 ID=Msa0381070;Name=Msa0381070
chr3_1 mRNA 83051518 83053086 83051518 ID=Msa0381070-mRNA-1;Parent=Msa0381070;Name=Msa0381070-mRNA-1;_AED=0.12;_eAED=0.13;_QI=0|0|0|1|1|1|5|0|316
chr3_1 exon 83051518 83051979 83051518 ID=Msa0381070-mRNA-1:exon:21285;Parent=Msa0381070-mRNA-1
chr3_1 exon 83052154 83052408 83052154 ID=Msa0381070-mRNA-1:exon:21286;Parent=Msa0381070-mRNA-1
chr3_1 exon 83052631 83052696 83052631 ID=Msa0381070-mRNA-1:exon:21287;Parent=Msa0381070-mRNA-1
chr3_1 exon 83052796 83052861 83052796 ID=Msa0381070-mRNA-1:exon:21288;Parent=Msa0381070-mRNA-1
chr3_1 exon 83052985 83053086 83052985 ID=Msa0381070-mRNA-1:exon:21289;Parent=Msa0381070-mRNA-1
chr3_1 CDS 83051518 83051979 83051518 ID=Msa0381070-mRNA-1:cds;Parent=Msa0381070-mRNA-1
chr3_1 CDS 83052154 83052408 83052154 ID=Msa0381070-mRNA-1:cds;Parent=Msa0381070-mRNA-1
chr3_1 CDS 83052631 83052696 83052631 ID=Msa0381070-mRNA-1:cds;Parent=Msa0381070-mRNA-1
chr3_1 CDS 83052796 83052861 83052796 ID=Msa0381070-mRNA-1:cds;Parent=Msa0381070-mRNA-1
chr3_1 CDS 83052985 83053086 83052985 ID=Msa0381070-mRNA-1:cds;Parent=Msa0381070-mRNA-1
Gene Sequence

>Msa0381070

ATGGAAACACTTGGAGCTATCCCTGATGATGGCGAATGGGAATGCTTCCGCAGAATATTTGCAACTGAAGACCATGATGACTCTCCACCACAATTACTTGATCAAACCTCGCTTCTGCTTGGAGAAAATAATGGGAACTTTGGAGTACAATCCATGTTTTGCTCCCCTTCTGAAGCTGAGGGAAACATGAATACTAATGTGTTTTATTCTTTTGATTCTCACATCAACTATAATTCACTAGAAAGTAATCATAATACTCAAGGTCACACAAACTACTATTTTGACTGTTCTGATCATGTGGTAGCTAATAATAGTGACAGAACAGAGAATTTTGATCACAATCAAGTCCAACCTAAGTTGAAGCTGAAAAGGATGCTTGATGTGCCAGAATTTCAGGTGCATGTAGAAGATAAGATAAACTCATGTGGGAACCCTAAGAAAAAACCTCGTGCTGCAAAAGATGTGCAAAGATGCATGAAAAATTCAGAGTCCAAGAAGAGCAAGAAGGTTGATAGAAATGAGAACAAGGCAGAAGAAGCCAATGCAAGTGTAGATGGACATACCTCCAGTGGTTATACCTCAGAGGAACAAAACATGTGTGAGGAAAACAGTGGAGGAGCTTCTGCAGCTTCTAAATCAACTGTGTCTCTCAACTCCAATGGAAAGAAAAGAGCTAGTAGAGGATCAGCAACAGATCCTCAAAGCCTCTATGCAAGGAAAAGAAGGGAGAAAATAAACGAGAGACTGAGAACTCTACAAAATCTTGTACCAAATGGGACAAAGGTTGATATAAGCACAATGCTTGAAGATGCAATCCAATATGTGAAATTTCTGCAGCTCCAAATCAAGCTTCTAAGCTCTGATGATCTGTGGATGTATGCGCCAATTGCTTATAATGGACTTGACATTGGATTCAATCTCAACAGGAAGAAGATTTCTCCACCACCATGA

Protein sequence

>Msa0381070

METLGAIPDDGEWECFRRIFATEDHDDSPPQLLDQTSLLLGENNGNFGVQSMFCSPSEAEGNMNTNVFYSFDSHINYNSLESNHNTQGHTNYYFDCSDHVVANNSDRTENFDHNQVQPKLKLKRMLDVPEFQVHVEDKINSCGNPKKKPRAAKDVQRCMKNSESKKSKKVDRNENKAEEANASVDGHTSSGYTSEEQNMCEENSGGASAASKSTVSLNSNGKKRASRGSATDPQSLYARKRREKINERLRTLQNLVPNGTKVDISTMLEDAIQYVKFLQLQIKLLSSDDLWMYAPIAYNGLDIGFNLNRKKISPPP*