Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0381070 | XP_013461773.1 | 89.441 | 322 | 27 | 2 | 1 | 316 | 1 | 321 | 0.0 | 596 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0381070 | sp|Q7XHI9|BH084_ARATH | 50.230 | 217 | 74 | 6 | 109 | 307 | 121 | 321 | 3.15e-55 | 185 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0381070 | A0A072V390 | 89.441 | 322 | 27 | 2 | 1 | 316 | 1 | 321 | 0.0 | 596 |
Gene ID | Type | Classification |
---|---|---|
Msa0381070 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0381070 | MtrunA17_Chr3g0134741 | 89.441 | 322 | 27 | 2 | 1 | 316 | 1 | 321 | 0.0 | 596 |
Msa0381070 | MtrunA17_Chr1g0152651 | 49.862 | 363 | 103 | 11 | 1 | 298 | 1 | 349 | 7.86e-86 | 262 |
Msa0381070 | MtrunA17_Chr5g0393721 | 40.361 | 332 | 149 | 14 | 1 | 307 | 1 | 308 | 3.65e-55 | 182 |
Msa0381070 | MtrunA17_Chr1g0207301 | 51.445 | 173 | 63 | 4 | 147 | 308 | 211 | 373 | 4.22e-46 | 160 |
Msa0381070 | MtrunA17_Chr1g0207311 | 78.161 | 87 | 19 | 0 | 222 | 308 | 195 | 281 | 2.00e-43 | 150 |
Msa0381070 | MtrunA17_Chr5g0435021 | 58.571 | 70 | 29 | 0 | 222 | 291 | 217 | 286 | 1.54e-22 | 95.5 |
Msa0381070 | MtrunA17_Chr4g0074161 | 52.632 | 76 | 36 | 0 | 222 | 297 | 205 | 280 | 2.63e-18 | 84.7 |
Msa0381070 | MtrunA17_Chr8g0384141 | 60.606 | 66 | 25 | 1 | 222 | 287 | 114 | 178 | 1.26e-17 | 81.3 |
Msa0381070 | MtrunA17_Chr1g0190731 | 46.341 | 82 | 44 | 0 | 222 | 303 | 192 | 273 | 3.98e-16 | 78.2 |
Msa0381070 | MtrunA17_Chr3g0134001 | 53.968 | 63 | 29 | 0 | 223 | 285 | 171 | 233 | 7.48e-16 | 76.3 |
Msa0381070 | MtrunA17_Chr7g0243041 | 54.545 | 55 | 25 | 0 | 230 | 284 | 33 | 87 | 7.73e-15 | 70.9 |
Msa0381070 | MtrunA17_Chr1g0153241 | 34.167 | 120 | 73 | 2 | 181 | 300 | 49 | 162 | 1.03e-13 | 70.1 |
Msa0381070 | MtrunA17_Chr1g0193321 | 45.455 | 66 | 36 | 0 | 221 | 286 | 460 | 525 | 3.50e-13 | 70.1 |
Msa0381070 | MtrunA17_Chr4g0014771 | 53.030 | 66 | 30 | 1 | 222 | 286 | 117 | 182 | 9.49e-13 | 65.9 |
Msa0381070 | MtrunA17_Chr8g0363921 | 31.847 | 157 | 88 | 5 | 139 | 286 | 69 | 215 | 3.06e-12 | 65.9 |
Msa0381070 | MtrunA17_Chr4g0032951 | 39.823 | 113 | 66 | 2 | 175 | 286 | 308 | 419 | 4.37e-12 | 66.6 |
Msa0381070 | MtrunA17_Chr1g0182791 | 43.939 | 66 | 37 | 0 | 221 | 286 | 315 | 380 | 4.78e-12 | 66.6 |
Msa0381070 | MtrunA17_Chr3g0095391 | 30.822 | 146 | 89 | 2 | 154 | 292 | 233 | 373 | 5.02e-12 | 66.2 |
Msa0381070 | MtrunA17_Chr6g0484271 | 44.318 | 88 | 44 | 2 | 204 | 286 | 132 | 219 | 6.36e-12 | 65.1 |
Msa0381070 | MtrunA17_Chr1g0174271 | 54.545 | 66 | 29 | 1 | 222 | 286 | 297 | 362 | 1.07e-11 | 65.1 |
Msa0381070 | MtrunA17_Chr7g0234761 | 30.526 | 190 | 116 | 5 | 98 | 286 | 207 | 381 | 1.10e-11 | 65.5 |
Msa0381070 | MtrunA17_Chr8g0339091 | 53.125 | 64 | 29 | 1 | 224 | 286 | 292 | 355 | 1.54e-11 | 65.1 |
Msa0381070 | MtrunA17_Chr5g0402031 | 42.188 | 64 | 37 | 0 | 236 | 299 | 118 | 181 | 1.57e-11 | 64.3 |
Msa0381070 | MtrunA17_Chr1g0152131 | 51.562 | 64 | 30 | 1 | 224 | 286 | 261 | 324 | 2.19e-11 | 64.3 |
Msa0381070 | MtrunA17_Chr7g0270871 | 46.269 | 67 | 34 | 1 | 220 | 286 | 201 | 265 | 2.36e-11 | 63.9 |
Msa0381070 | MtrunA17_Chr5g0415291 | 44.565 | 92 | 42 | 3 | 201 | 286 | 88 | 176 | 2.66e-11 | 62.8 |
Msa0381070 | MtrunA17_Chr4g0035101 | 51.562 | 64 | 30 | 1 | 224 | 286 | 144 | 207 | 4.17e-11 | 63.2 |
Msa0381070 | MtrunA17_Chr7g0231461 | 50.000 | 60 | 28 | 1 | 226 | 285 | 302 | 359 | 6.18e-11 | 63.2 |
Msa0381070 | MtrunA17_Chr3g0144641 | 51.562 | 64 | 30 | 1 | 224 | 286 | 192 | 255 | 6.77e-11 | 62.8 |
Msa0381070 | MtrunA17_Chr3g0131771 | 53.125 | 64 | 29 | 1 | 224 | 286 | 148 | 211 | 6.79e-11 | 62.4 |
Msa0381070 | MtrunA17_Chr2g0329041 | 51.562 | 64 | 30 | 1 | 222 | 284 | 331 | 394 | 7.25e-11 | 62.8 |
Msa0381070 | MtrunA17_Chr5g0421111 | 51.562 | 64 | 30 | 1 | 224 | 286 | 366 | 429 | 7.42e-11 | 62.8 |
Msa0381070 | MtrunA17_Chr8g0365941 | 51.562 | 64 | 30 | 1 | 224 | 286 | 306 | 369 | 9.30e-11 | 62.4 |
Msa0381070 | MtrunA17_Chr7g0262691 | 36.559 | 93 | 54 | 1 | 191 | 283 | 225 | 312 | 9.74e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0381070 | AT2G14760.1 | 50.230 | 217 | 74 | 6 | 109 | 307 | 121 | 321 | 3.20e-56 | 185 |
Msa0381070 | AT4G33880.1 | 59.119 | 159 | 62 | 1 | 150 | 305 | 190 | 348 | 1.09e-54 | 182 |
Msa0381070 | AT1G27740.1 | 61.486 | 148 | 40 | 3 | 162 | 308 | 121 | 252 | 3.59e-53 | 175 |
Msa0381070 | AT2G14760.3 | 47.391 | 230 | 74 | 7 | 109 | 307 | 121 | 334 | 1.27e-52 | 176 |
Msa0381070 | AT5G43175.1 | 57.931 | 145 | 52 | 3 | 165 | 308 | 81 | 217 | 9.65e-46 | 155 |
Msa0381070 | AT5G37800.1 | 61.039 | 77 | 29 | 1 | 216 | 291 | 193 | 269 | 1.31e-23 | 99.0 |
Msa0381070 | AT1G66470.1 | 52.809 | 89 | 42 | 0 | 203 | 291 | 175 | 263 | 2.46e-23 | 97.8 |
Msa0381070 | AT2G24260.2 | 51.613 | 93 | 43 | 1 | 207 | 297 | 17 | 109 | 1.25e-21 | 92.0 |
Msa0381070 | AT4G30980.1 | 47.573 | 103 | 47 | 2 | 189 | 290 | 101 | 197 | 3.38e-21 | 92.4 |
Msa0381070 | AT4G30980.2 | 47.573 | 103 | 47 | 2 | 189 | 290 | 149 | 245 | 4.28e-21 | 92.8 |
Msa0381070 | AT2G24260.1 | 51.613 | 93 | 43 | 1 | 207 | 297 | 120 | 212 | 7.09e-21 | 92.0 |
Msa0381070 | AT5G58010.1 | 48.352 | 91 | 43 | 2 | 222 | 308 | 98 | 188 | 9.87e-19 | 85.1 |
Msa0381070 | AT3G21330.1 | 52.381 | 63 | 30 | 0 | 223 | 285 | 269 | 331 | 2.70e-15 | 76.3 |
Msa0381070 | AT5G50915.3 | 35.196 | 179 | 76 | 7 | 170 | 314 | 57 | 229 | 1.05e-14 | 73.2 |
Msa0381070 | AT5G50915.4 | 35.196 | 179 | 76 | 7 | 170 | 314 | 57 | 229 | 1.05e-14 | 73.2 |
Msa0381070 | AT5G50915.1 | 35.196 | 179 | 76 | 7 | 170 | 314 | 57 | 229 | 1.09e-14 | 73.6 |
Msa0381070 | AT5G50915.2 | 35.196 | 179 | 76 | 7 | 170 | 314 | 57 | 229 | 1.09e-14 | 73.6 |
Msa0381070 | AT5G01305.1 | 49.180 | 61 | 31 | 0 | 222 | 282 | 36 | 96 | 1.38e-14 | 70.9 |
Msa0381070 | AT4G00120.1 | 50.000 | 54 | 27 | 0 | 232 | 285 | 121 | 174 | 3.42e-14 | 70.5 |
Msa0381070 | AT1G25330.1 | 50.617 | 81 | 39 | 1 | 224 | 303 | 105 | 185 | 4.72e-13 | 67.8 |
Msa0381070 | AT1G09530.3 | 37.895 | 95 | 53 | 1 | 201 | 295 | 321 | 409 | 6.36e-13 | 69.7 |
Msa0381070 | AT1G09530.2 | 37.895 | 95 | 53 | 1 | 201 | 295 | 321 | 409 | 6.36e-13 | 69.7 |
Msa0381070 | AT1G09530.5 | 37.895 | 95 | 53 | 1 | 201 | 295 | 321 | 409 | 6.36e-13 | 69.7 |
Msa0381070 | AT1G09530.1 | 37.895 | 95 | 53 | 1 | 201 | 295 | 321 | 409 | 6.36e-13 | 69.7 |
Msa0381070 | AT1G09530.4 | 37.895 | 95 | 53 | 1 | 201 | 295 | 321 | 409 | 6.36e-13 | 69.7 |
Msa0381070 | AT1G09530.6 | 37.895 | 95 | 53 | 1 | 201 | 295 | 321 | 409 | 6.36e-13 | 69.7 |
Msa0381070 | AT4G00050.2 | 39.423 | 104 | 51 | 3 | 183 | 286 | 77 | 168 | 1.11e-12 | 67.8 |
Msa0381070 | AT1G51140.1 | 53.846 | 65 | 29 | 1 | 222 | 285 | 303 | 367 | 1.14e-12 | 68.6 |
Msa0381070 | AT1G18400.2 | 54.688 | 64 | 28 | 1 | 224 | 286 | 146 | 209 | 1.67e-12 | 66.6 |
Msa0381070 | AT5G67110.1 | 41.000 | 100 | 45 | 3 | 219 | 316 | 81 | 168 | 1.95e-12 | 65.9 |
Msa0381070 | AT1G18400.1 | 54.688 | 64 | 28 | 1 | 224 | 286 | 146 | 209 | 2.30e-12 | 66.6 |
Msa0381070 | AT4G00050.3 | 39.423 | 104 | 51 | 3 | 183 | 286 | 179 | 270 | 2.57e-12 | 67.4 |
Msa0381070 | AT4G00050.1 | 39.423 | 104 | 51 | 3 | 183 | 286 | 179 | 270 | 2.63e-12 | 67.4 |
Msa0381070 | AT4G09180.1 | 48.529 | 68 | 34 | 1 | 222 | 288 | 183 | 250 | 4.90e-12 | 65.5 |
Msa0381070 | AT1G35460.1 | 50.000 | 66 | 32 | 1 | 222 | 286 | 180 | 245 | 8.40e-12 | 64.7 |
Msa0381070 | AT4G28790.1 | 45.946 | 74 | 39 | 1 | 227 | 300 | 275 | 347 | 1.25e-11 | 65.5 |
Msa0381070 | AT1G73830.2 | 51.562 | 64 | 30 | 1 | 224 | 286 | 148 | 211 | 1.30e-11 | 64.3 |
Msa0381070 | AT2G20180.7 | 37.363 | 91 | 52 | 1 | 196 | 286 | 185 | 270 | 1.30e-11 | 65.5 |
Msa0381070 | AT2G20180.1 | 37.363 | 91 | 52 | 1 | 196 | 286 | 185 | 270 | 1.30e-11 | 65.5 |
Msa0381070 | AT2G20180.5 | 37.363 | 91 | 52 | 1 | 196 | 286 | 185 | 270 | 1.30e-11 | 65.5 |
Msa0381070 | AT2G20180.4 | 37.363 | 91 | 52 | 1 | 196 | 286 | 256 | 341 | 1.33e-11 | 65.5 |
Msa0381070 | AT2G20180.6 | 37.363 | 91 | 52 | 1 | 196 | 286 | 256 | 341 | 1.33e-11 | 65.5 |
Msa0381070 | AT2G20180.2 | 37.363 | 91 | 52 | 1 | 196 | 286 | 256 | 341 | 1.33e-11 | 65.5 |
Msa0381070 | AT2G20180.3 | 37.363 | 91 | 52 | 1 | 196 | 286 | 256 | 341 | 1.33e-11 | 65.5 |
Msa0381070 | AT4G28815.2 | 38.776 | 98 | 55 | 2 | 206 | 298 | 47 | 144 | 1.37e-11 | 63.9 |
Msa0381070 | AT1G73830.1 | 51.562 | 64 | 30 | 1 | 224 | 286 | 148 | 211 | 1.38e-11 | 64.3 |
Msa0381070 | AT4G36930.1 | 36.047 | 86 | 54 | 1 | 230 | 315 | 198 | 282 | 1.55e-11 | 65.1 |
Msa0381070 | AT2G46970.2 | 31.356 | 118 | 75 | 2 | 195 | 307 | 165 | 281 | 1.73e-11 | 64.7 |
Msa0381070 | AT2G46970.3 | 31.356 | 118 | 75 | 2 | 195 | 307 | 174 | 290 | 1.78e-11 | 64.7 |
Msa0381070 | AT2G46970.1 | 31.356 | 118 | 75 | 2 | 195 | 307 | 196 | 312 | 1.80e-11 | 65.1 |
Msa0381070 | AT2G18300.2 | 36.434 | 129 | 73 | 3 | 159 | 286 | 129 | 249 | 2.07e-11 | 64.3 |
Msa0381070 | AT4G28815.1 | 38.776 | 98 | 55 | 2 | 206 | 298 | 123 | 220 | 2.14e-11 | 64.3 |
Msa0381070 | AT2G18300.1 | 36.434 | 129 | 73 | 3 | 159 | 286 | 129 | 249 | 2.23e-11 | 64.3 |
Msa0381070 | AT1G68920.3 | 32.237 | 152 | 101 | 2 | 136 | 286 | 216 | 366 | 2.59e-11 | 64.7 |
Msa0381070 | AT2G18300.3 | 36.434 | 129 | 73 | 3 | 159 | 286 | 129 | 249 | 2.85e-11 | 64.3 |
Msa0381070 | AT3G07340.1 | 53.125 | 64 | 29 | 1 | 224 | 286 | 259 | 322 | 3.11e-11 | 64.3 |
Msa0381070 | AT3G07340.2 | 53.125 | 64 | 29 | 1 | 224 | 286 | 259 | 322 | 3.41e-11 | 64.3 |
Msa0381070 | AT2G42280.1 | 52.308 | 65 | 30 | 1 | 222 | 285 | 278 | 342 | 3.90e-11 | 63.5 |
Msa0381070 | AT1G26260.3 | 53.125 | 64 | 29 | 1 | 224 | 286 | 173 | 236 | 4.07e-11 | 63.5 |
Msa0381070 | AT5G48560.1 | 53.125 | 64 | 29 | 1 | 224 | 286 | 302 | 365 | 4.27e-11 | 63.9 |
Msa0381070 | AT1G26260.4 | 53.125 | 64 | 29 | 1 | 224 | 286 | 224 | 287 | 4.40e-11 | 63.5 |
Msa0381070 | AT1G26260.1 | 53.125 | 64 | 29 | 1 | 224 | 286 | 224 | 287 | 4.40e-11 | 63.5 |
Msa0381070 | AT1G26260.6 | 53.125 | 64 | 29 | 1 | 224 | 286 | 224 | 287 | 4.40e-11 | 63.5 |
Msa0381070 | AT1G26260.2 | 53.125 | 64 | 29 | 1 | 224 | 286 | 224 | 287 | 4.40e-11 | 63.5 |
Msa0381070 | AT1G26260.5 | 53.125 | 64 | 29 | 1 | 224 | 286 | 202 | 265 | 4.58e-11 | 63.5 |
Msa0381070 | AT5G48560.2 | 53.125 | 64 | 29 | 1 | 224 | 286 | 302 | 365 | 4.60e-11 | 63.9 |
Msa0381070 | AT1G59640.1 | 50.000 | 64 | 31 | 1 | 224 | 286 | 137 | 200 | 5.29e-11 | 62.4 |
Msa0381070 | AT1G10120.2 | 51.562 | 64 | 30 | 1 | 224 | 286 | 207 | 270 | 5.32e-11 | 63.2 |
Msa0381070 | AT1G10120.1 | 51.562 | 64 | 30 | 1 | 224 | 286 | 207 | 270 | 5.32e-11 | 63.2 |
Msa0381070 | AT2G20180.8 | 37.079 | 89 | 51 | 1 | 196 | 284 | 256 | 339 | 6.73e-11 | 62.8 |
Msa0381070 | AT4G34530.1 | 51.562 | 64 | 30 | 1 | 224 | 286 | 173 | 236 | 7.99e-11 | 62.8 |
Msa0381070 | AT3G23690.1 | 50.000 | 64 | 31 | 1 | 224 | 286 | 192 | 255 | 9.82e-11 | 62.4 |
Find 55 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCAACCTTCTTGCTCTTCT+TGG | 0.125181 | 3_1:-83052182 | None:intergenic |
GCTTGATGTGCCAGAATTTC+AGG | 0.228928 | 3_1:+83051892 | Msa0381070:CDS |
GCTGCAGAAATTTCACATAT+TGG | 0.264015 | 3_1:-83052828 | None:intergenic |
ACTCATATATTACCTTGATT+TGG | 0.291701 | 3_1:-83052852 | None:intergenic |
TCTACATGCACCTGAAATTC+TGG | 0.295024 | 3_1:-83051902 | None:intergenic |
TAAATTACCTTTGTCCCATT+TGG | 0.321779 | 3_1:-83052682 | None:intergenic |
TATGCGCCAATTGCTTATAA+TGG | 0.346115 | 3_1:+83053012 | Msa0381070:CDS |
CTTCTGCTTGGAGAAAATAA+TGG | 0.350452 | 3_1:+83051629 | Msa0381070:CDS |
CTACAAAATCTTGTACCAAA+TGG | 0.385534 | 3_1:+83052667 | Msa0381070:CDS |
CATTCCCATTCGCCATCATC+AGG | 0.393250 | 3_1:-83051539 | None:intergenic |
ACCCTTGCATAGAGGCTTTG+AGG | 0.393741 | 3_1:-83052388 | None:intergenic |
TACAAAATCTTGTACCAAAT+GGG | 0.416760 | 3_1:+83052668 | Msa0381070:CDS |
GGAGAAAATAATGGGAACTT+TGG | 0.422902 | 3_1:+83051638 | Msa0381070:CDS |
GAAGCCAATGCAAGTGTAGA+TGG | 0.429354 | 3_1:+83052226 | Msa0381070:CDS |
TTCTGCTTGGAGAAAATAAT+GGG | 0.435352 | 3_1:+83051630 | Msa0381070:CDS |
ACATTGGATTCAATCTCAAC+AGG | 0.435704 | 3_1:+83053040 | Msa0381070:CDS |
TCAAGTCCATTATAAGCAAT+TGG | 0.441871 | 3_1:-83053018 | None:intergenic |
AACCTAAGTTGAAGCTGAAA+AGG | 0.448825 | 3_1:+83051867 | Msa0381070:CDS |
TTGCTCCCCTTCTGAAGCTG+AGG | 0.486357 | 3_1:+83051676 | Msa0381070:CDS |
TTCCTCTGAGGTATAACCAC+TGG | 0.491898 | 3_1:-83052257 | None:intergenic |
GATCAAACCTCGCTTCTGCT+TGG | 0.495958 | 3_1:+83051617 | Msa0381070:CDS |
GCTTATAATGGACTTGACAT+TGG | 0.507048 | 3_1:+83053024 | Msa0381070:CDS |
ATTTCTGCAGCTCCAAATCA+AGG | 0.513225 | 3_1:+83052840 | Msa0381070:CDS |
TATCCCTGATGATGGCGAAT+GGG | 0.522217 | 3_1:+83051535 | Msa0381070:CDS |
ATCCTCAAAGCCTCTATGCA+AGG | 0.540493 | 3_1:+83052386 | Msa0381070:CDS |
ATGTTTCCCTCAGCTTCAGA+AGG | 0.542520 | 3_1:-83051683 | None:intergenic |
CTTGGAGCTATCCCTGATGA+TGG | 0.545545 | 3_1:+83051527 | Msa0381070:CDS |
TGCTCCCCTTCTGAAGCTGA+GGG | 0.548801 | 3_1:+83051677 | Msa0381070:CDS |
AAGATAAGATAAACTCATGT+GGG | 0.556515 | 3_1:+83051924 | Msa0381070:CDS |
ACTGTGTCTCTCAACTCCAA+TGG | 0.558276 | 3_1:+83052331 | Msa0381070:CDS |
GAAAGTAATCATAATACTCA+AGG | 0.561375 | 3_1:+83051758 | Msa0381070:CDS |
ATGTCCATCTACACTTGCAT+TGG | 0.565311 | 3_1:-83052230 | None:intergenic |
TGATAATTACCCTTGCATAG+AGG | 0.574539 | 3_1:-83052396 | None:intergenic |
TGTTTCCCTCAGCTTCAGAA+GGG | 0.575825 | 3_1:-83051682 | None:intergenic |
CTATCCCTGATGATGGCGAA+TGG | 0.588808 | 3_1:+83051534 | Msa0381070:CDS |
GAAGATAAGATAAACTCATG+TGG | 0.590178 | 3_1:+83051923 | Msa0381070:CDS |
ATTGTGGTGGAGAGTCATCA+TGG | 0.590276 | 3_1:-83051589 | None:intergenic |
TCCTCAAAGCCTCTATGCAA+GGG | 0.593714 | 3_1:+83052387 | Msa0381070:CDS |
TTCAGAAGGGGAGCAAAACA+TGG | 0.599755 | 3_1:-83051669 | None:intergenic |
TCTTGTACCAAATGGGACAA+AGG | 0.600952 | 3_1:+83052675 | Msa0381070:CDS |
GGTTGATAGAAATGAGAACA+AGG | 0.615117 | 3_1:+83052198 | Msa0381070:CDS |
GTTTCCCTCAGCTTCAGAAG+GGG | 0.626059 | 3_1:-83051681 | None:intergenic |
GGAAAGAAAAGAGCTAGTAG+AGG | 0.626774 | 3_1:+83052352 | Msa0381070:CDS |
TTCTAAGCTCTGATGATCTG+TGG | 0.632585 | 3_1:+83052986 | Msa0381070:CDS |
GAGGTTTGATCAAGTAATTG+TGG | 0.634212 | 3_1:-83051605 | None:intergenic |
AGAGTCCAAGAAGAGCAAGA+AGG | 0.635660 | 3_1:+83052177 | Msa0381070:CDS |
GTTTGATCAAGTAATTGTGG+TGG | 0.639569 | 3_1:-83051602 | None:intergenic |
ATTCCCATTCGCCATCATCA+GGG | 0.639610 | 3_1:-83051538 | None:intergenic |
CTTCAGTTGCAAATATTCTG+CGG | 0.648235 | 3_1:-83051565 | None:intergenic |
CTCTGAGGTATAACCACTGG+AGG | 0.652022 | 3_1:-83052254 | None:intergenic |
CTCCAGTGGTTATACCTCAG+AGG | 0.674227 | 3_1:+83052255 | Msa0381070:CDS |
AGAGGAACAAAACATGTGTG+AGG | 0.675741 | 3_1:+83052273 | Msa0381070:CDS |
GTAGATGGACATACCTCCAG+TGG | 0.708485 | 3_1:+83052241 | Msa0381070:CDS |
ATGTGTGAGGAAAACAGTGG+AGG | 0.712518 | 3_1:+83052286 | Msa0381070:CDS |
AACATGTGTGAGGAAAACAG+TGG | 0.790408 | 3_1:+83052283 | Msa0381070:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATAATGATTTGAAATTTTG+TGG | + | chr3_1:83052118-83052137 | Msa0381070:intron | 15.0% |
!!! | AATAATGATTTGAAATTTTG+TGG | + | chr3_1:83052118-83052137 | Msa0381070:intron | 15.0% |
!! | ATCATTATTGCTAATTAAAG+TGG | - | chr3_1:83052107-83052126 | None:intergenic | 20.0% |
!!! | TTTGAATTTTACAGAAAAGA+AGG | + | chr3_1:83052617-83052636 | Msa0381070:intron | 20.0% |
!!! | TTGAATTTTACAGAAAAGAA+GGG | + | chr3_1:83052618-83052637 | Msa0381070:intron | 20.0% |
!!! | ATGAATGTTTTGCATTTTAA+AGG | + | chr3_1:83052712-83052731 | Msa0381070:intron | 20.0% |
!!! | TGAATGTTTTGCATTTTAAA+GGG | + | chr3_1:83052713-83052732 | Msa0381070:intron | 20.0% |
!! | GAGATGTATAATTTGATATA+TGG | + | chr3_1:83052759-83052778 | Msa0381070:intron | 20.0% |
!! | TGTATAATTTGATATATGGA+TGG | + | chr3_1:83052763-83052782 | Msa0381070:intron | 20.0% |
!! | ATTTCTGTTTAGAAATATCA+AGG | + | chr3_1:83052901-83052920 | Msa0381070:intron | 20.0% |
!! | ATCATTATTGCTAATTAAAG+TGG | - | chr3_1:83052107-83052126 | None:intergenic | 20.0% |
!!! | TTTGAATTTTACAGAAAAGA+AGG | + | chr3_1:83052617-83052636 | Msa0381070:intron | 20.0% |
!!! | TTGAATTTTACAGAAAAGAA+GGG | + | chr3_1:83052618-83052637 | Msa0381070:intron | 20.0% |
!!! | ATGAATGTTTTGCATTTTAA+AGG | + | chr3_1:83052712-83052731 | Msa0381070:intron | 20.0% |
!!! | TGAATGTTTTGCATTTTAAA+GGG | + | chr3_1:83052713-83052732 | Msa0381070:intron | 20.0% |
!! | GAGATGTATAATTTGATATA+TGG | + | chr3_1:83052759-83052778 | Msa0381070:intron | 20.0% |
!! | TGTATAATTTGATATATGGA+TGG | + | chr3_1:83052763-83052782 | Msa0381070:intron | 20.0% |
!! | ATTTCTGTTTAGAAATATCA+AGG | + | chr3_1:83052901-83052920 | Msa0381070:intron | 20.0% |
! | GAAAGTAATCATAATACTCA+AGG | + | chr3_1:83051758-83051777 | Msa0381070:CDS | 25.0% |
! | AAGATAAGATAAACTCATGT+GGG | + | chr3_1:83051924-83051943 | Msa0381070:CDS | 25.0% |
! | TAATAAATTTGTCAGCTTAG+CGG | + | chr3_1:83052030-83052049 | Msa0381070:intron | 25.0% |
!! | TTGACATTTTGTAATCTCAA+AGG | + | chr3_1:83052061-83052080 | Msa0381070:intron | 25.0% |
! | AAGAGGAATAGTAAAACAAA+AGG | - | chr3_1:83052440-83052459 | None:intergenic | 25.0% |
! | TACAAAATCTTGTACCAAAT+GGG | + | chr3_1:83052668-83052687 | Msa0381070:CDS | 25.0% |
!!! | GAATGTTTTGCATTTTAAAG+GGG | + | chr3_1:83052714-83052733 | Msa0381070:intron | 25.0% |
!!! | AATGTTTTGCATTTTAAAGG+GGG | + | chr3_1:83052715-83052734 | Msa0381070:intron | 25.0% |
! | ACTCATATATTACCTTGATT+TGG | - | chr3_1:83052855-83052874 | None:intergenic | 25.0% |
! | GAAAGTAATCATAATACTCA+AGG | + | chr3_1:83051758-83051777 | Msa0381070:CDS | 25.0% |
! | AAGATAAGATAAACTCATGT+GGG | + | chr3_1:83051924-83051943 | Msa0381070:CDS | 25.0% |
! | TAATAAATTTGTCAGCTTAG+CGG | + | chr3_1:83052030-83052049 | Msa0381070:intron | 25.0% |
!! | TTGACATTTTGTAATCTCAA+AGG | + | chr3_1:83052061-83052080 | Msa0381070:intron | 25.0% |
! | AAGAGGAATAGTAAAACAAA+AGG | - | chr3_1:83052440-83052459 | None:intergenic | 25.0% |
! | TACAAAATCTTGTACCAAAT+GGG | + | chr3_1:83052668-83052687 | Msa0381070:CDS | 25.0% |
!!! | GAATGTTTTGCATTTTAAAG+GGG | + | chr3_1:83052714-83052733 | Msa0381070:intron | 25.0% |
!!! | AATGTTTTGCATTTTAAAGG+GGG | + | chr3_1:83052715-83052734 | Msa0381070:intron | 25.0% |
! | ACTCATATATTACCTTGATT+TGG | - | chr3_1:83052855-83052874 | None:intergenic | 25.0% |
TTCTGCTTGGAGAAAATAAT+GGG | + | chr3_1:83051630-83051649 | Msa0381070:CDS | 30.0% | |
GAAGATAAGATAAACTCATG+TGG | + | chr3_1:83051923-83051942 | Msa0381070:CDS | 30.0% | |
CTGACAAATTTATTAACCGA+TGG | - | chr3_1:83052025-83052044 | None:intergenic | 30.0% | |
ATTGCTAATTAAAGTGGTAC+TGG | - | chr3_1:83052101-83052120 | None:intergenic | 30.0% | |
! | ATTTTGTGGTTTCCAAATTC+AGG | + | chr3_1:83052132-83052151 | Msa0381070:intron | 30.0% |
ACAGAATGGAGATTAAAAAG+AGG | - | chr3_1:83052457-83052476 | None:intergenic | 30.0% | |
TGCTATATACTTCATTCACT+TGG | - | chr3_1:83052574-83052593 | None:intergenic | 30.0% | |
CTACAAAATCTTGTACCAAA+TGG | + | chr3_1:83052667-83052686 | Msa0381070:CDS | 30.0% | |
TAAATTACCTTTGTCCCATT+TGG | - | chr3_1:83052685-83052704 | None:intergenic | 30.0% | |
! | GGGACAAAGGTAATTTATTT+TGG | + | chr3_1:83052688-83052707 | Msa0381070:intron | 30.0% |
TCAAGTCCATTATAAGCAAT+TGG | - | chr3_1:83053021-83053040 | None:intergenic | 30.0% | |
TTCTGCTTGGAGAAAATAAT+GGG | + | chr3_1:83051630-83051649 | Msa0381070:CDS | 30.0% | |
GAAGATAAGATAAACTCATG+TGG | + | chr3_1:83051923-83051942 | Msa0381070:CDS | 30.0% | |
CTGACAAATTTATTAACCGA+TGG | - | chr3_1:83052025-83052044 | None:intergenic | 30.0% | |
ATTGCTAATTAAAGTGGTAC+TGG | - | chr3_1:83052101-83052120 | None:intergenic | 30.0% | |
! | ATTTTGTGGTTTCCAAATTC+AGG | + | chr3_1:83052132-83052151 | Msa0381070:intron | 30.0% |
ACAGAATGGAGATTAAAAAG+AGG | - | chr3_1:83052457-83052476 | None:intergenic | 30.0% | |
TGCTATATACTTCATTCACT+TGG | - | chr3_1:83052574-83052593 | None:intergenic | 30.0% | |
CTACAAAATCTTGTACCAAA+TGG | + | chr3_1:83052667-83052686 | Msa0381070:CDS | 30.0% | |
TAAATTACCTTTGTCCCATT+TGG | - | chr3_1:83052685-83052704 | None:intergenic | 30.0% | |
! | GGGACAAAGGTAATTTATTT+TGG | + | chr3_1:83052688-83052707 | Msa0381070:intron | 30.0% |
TCAAGTCCATTATAAGCAAT+TGG | - | chr3_1:83053021-83053040 | None:intergenic | 30.0% | |
CTTCAGTTGCAAATATTCTG+CGG | - | chr3_1:83051568-83051587 | None:intergenic | 35.0% | |
GTTTGATCAAGTAATTGTGG+TGG | - | chr3_1:83051605-83051624 | None:intergenic | 35.0% | |
GAGGTTTGATCAAGTAATTG+TGG | - | chr3_1:83051608-83051627 | None:intergenic | 35.0% | |
CTTCTGCTTGGAGAAAATAA+TGG | + | chr3_1:83051629-83051648 | Msa0381070:CDS | 35.0% | |
! | GGAGAAAATAATGGGAACTT+TGG | + | chr3_1:83051638-83051657 | Msa0381070:CDS | 35.0% |
!! | TTTTGACTGTTCTGATCATG+TGG | + | chr3_1:83051796-83051815 | Msa0381070:CDS | 35.0% |
! | TTTTCAGCTTCAACTTAGGT+TGG | - | chr3_1:83051868-83051887 | None:intergenic | 35.0% |
! | AACCTAAGTTGAAGCTGAAA+AGG | + | chr3_1:83051867-83051886 | Msa0381070:CDS | 35.0% |
! | ATCCTTTTCAGCTTCAACTT+AGG | - | chr3_1:83051872-83051891 | None:intergenic | 35.0% |
!! | GGTTGATAGAAATGAGAACA+AGG | + | chr3_1:83052198-83052217 | Msa0381070:CDS | 35.0% |
!! | ACTAGCTCTTTTCTTTCCAT+TGG | - | chr3_1:83052350-83052369 | None:intergenic | 35.0% |
TGATAATTACCCTTGCATAG+AGG | - | chr3_1:83052399-83052418 | None:intergenic | 35.0% | |
TCCTTCCAAAGAAGAAAAGA+AGG | - | chr3_1:83052496-83052515 | None:intergenic | 35.0% | |
!! | TCTTTTCTTCTTTGGAAGGA+TGG | + | chr3_1:83052496-83052515 | Msa0381070:intron | 35.0% |
ATATATGGATGGTCATACAC+AGG | + | chr3_1:83052774-83052793 | Msa0381070:intron | 35.0% | |
GCTGCAGAAATTTCACATAT+TGG | - | chr3_1:83052831-83052850 | None:intergenic | 35.0% | |
TATGCGCCAATTGCTTATAA+TGG | + | chr3_1:83053012-83053031 | Msa0381070:CDS | 35.0% | |
!! | GCTTATAATGGACTTGACAT+TGG | + | chr3_1:83053024-83053043 | Msa0381070:CDS | 35.0% |
ACATTGGATTCAATCTCAAC+AGG | + | chr3_1:83053040-83053059 | Msa0381070:CDS | 35.0% | |
CTTCAGTTGCAAATATTCTG+CGG | - | chr3_1:83051568-83051587 | None:intergenic | 35.0% | |
GTTTGATCAAGTAATTGTGG+TGG | - | chr3_1:83051605-83051624 | None:intergenic | 35.0% | |
GAGGTTTGATCAAGTAATTG+TGG | - | chr3_1:83051608-83051627 | None:intergenic | 35.0% | |
CTTCTGCTTGGAGAAAATAA+TGG | + | chr3_1:83051629-83051648 | Msa0381070:CDS | 35.0% | |
! | GGAGAAAATAATGGGAACTT+TGG | + | chr3_1:83051638-83051657 | Msa0381070:CDS | 35.0% |
!! | TTTTGACTGTTCTGATCATG+TGG | + | chr3_1:83051796-83051815 | Msa0381070:CDS | 35.0% |
! | TTTTCAGCTTCAACTTAGGT+TGG | - | chr3_1:83051868-83051887 | None:intergenic | 35.0% |
! | AACCTAAGTTGAAGCTGAAA+AGG | + | chr3_1:83051867-83051886 | Msa0381070:CDS | 35.0% |
! | ATCCTTTTCAGCTTCAACTT+AGG | - | chr3_1:83051872-83051891 | None:intergenic | 35.0% |
!! | GGTTGATAGAAATGAGAACA+AGG | + | chr3_1:83052198-83052217 | Msa0381070:CDS | 35.0% |
!! | ACTAGCTCTTTTCTTTCCAT+TGG | - | chr3_1:83052350-83052369 | None:intergenic | 35.0% |
TGATAATTACCCTTGCATAG+AGG | - | chr3_1:83052399-83052418 | None:intergenic | 35.0% | |
TCCTTCCAAAGAAGAAAAGA+AGG | - | chr3_1:83052496-83052515 | None:intergenic | 35.0% | |
!! | TCTTTTCTTCTTTGGAAGGA+TGG | + | chr3_1:83052496-83052515 | Msa0381070:intron | 35.0% |
ATATATGGATGGTCATACAC+AGG | + | chr3_1:83052774-83052793 | Msa0381070:intron | 35.0% | |
GCTGCAGAAATTTCACATAT+TGG | - | chr3_1:83052831-83052850 | None:intergenic | 35.0% | |
TATGCGCCAATTGCTTATAA+TGG | + | chr3_1:83053012-83053031 | Msa0381070:CDS | 35.0% | |
!! | GCTTATAATGGACTTGACAT+TGG | + | chr3_1:83053024-83053043 | Msa0381070:CDS | 35.0% |
ACATTGGATTCAATCTCAAC+AGG | + | chr3_1:83053040-83053059 | Msa0381070:CDS | 35.0% | |
TCTACATGCACCTGAAATTC+TGG | - | chr3_1:83051905-83051924 | None:intergenic | 40.0% | |
!!! | CAGCACGAGGTTTTTTCTTA+GGG | - | chr3_1:83051952-83051971 | None:intergenic | 40.0% |
CCATACGATATTCACTCCAT+CGG | + | chr3_1:83052006-83052025 | Msa0381070:intron | 40.0% | |
TGCATCTTTGCACCTGAATT+TGG | - | chr3_1:83052147-83052166 | None:intergenic | 40.0% | |
ATCAACCTTCTTGCTCTTCT+TGG | - | chr3_1:83052185-83052204 | None:intergenic | 40.0% | |
ATGTCCATCTACACTTGCAT+TGG | - | chr3_1:83052233-83052252 | None:intergenic | 40.0% | |
!! | ACACATGTTTTGTTCCTCTG+AGG | - | chr3_1:83052272-83052291 | None:intergenic | 40.0% |
AGAGGAACAAAACATGTGTG+AGG | + | chr3_1:83052273-83052292 | Msa0381070:CDS | 40.0% | |
AACATGTGTGAGGAAAACAG+TGG | + | chr3_1:83052283-83052302 | Msa0381070:CDS | 40.0% | |
GGAAAGAAAAGAGCTAGTAG+AGG | + | chr3_1:83052352-83052371 | Msa0381070:CDS | 40.0% | |
ACATGCTATGGTTCACAGAA+TGG | - | chr3_1:83052471-83052490 | None:intergenic | 40.0% | |
ATTCTGTGAACCATAGCATG+TGG | + | chr3_1:83052470-83052489 | Msa0381070:intron | 40.0% | |
! | TGTGGCCTTCTTTTCTTCTT+TGG | + | chr3_1:83052488-83052507 | Msa0381070:intron | 40.0% |
! | GCCTTCTTTTCTTCTTTGGA+AGG | + | chr3_1:83052492-83052511 | Msa0381070:intron | 40.0% |
TCTTGTACCAAATGGGACAA+AGG | + | chr3_1:83052675-83052694 | Msa0381070:CDS | 40.0% | |
ATTTCTGCAGCTCCAAATCA+AGG | + | chr3_1:83052840-83052859 | Msa0381070:CDS | 40.0% | |
! | TTCTAAGCTCTGATGATCTG+TGG | + | chr3_1:83052986-83053005 | Msa0381070:CDS | 40.0% |
TCTACATGCACCTGAAATTC+TGG | - | chr3_1:83051905-83051924 | None:intergenic | 40.0% | |
!!! | CAGCACGAGGTTTTTTCTTA+GGG | - | chr3_1:83051952-83051971 | None:intergenic | 40.0% |
CCATACGATATTCACTCCAT+CGG | + | chr3_1:83052006-83052025 | Msa0381070:intron | 40.0% | |
TGCATCTTTGCACCTGAATT+TGG | - | chr3_1:83052147-83052166 | None:intergenic | 40.0% | |
ATCAACCTTCTTGCTCTTCT+TGG | - | chr3_1:83052185-83052204 | None:intergenic | 40.0% | |
ATGTCCATCTACACTTGCAT+TGG | - | chr3_1:83052233-83052252 | None:intergenic | 40.0% | |
!! | ACACATGTTTTGTTCCTCTG+AGG | - | chr3_1:83052272-83052291 | None:intergenic | 40.0% |
AGAGGAACAAAACATGTGTG+AGG | + | chr3_1:83052273-83052292 | Msa0381070:CDS | 40.0% | |
AACATGTGTGAGGAAAACAG+TGG | + | chr3_1:83052283-83052302 | Msa0381070:CDS | 40.0% | |
GGAAAGAAAAGAGCTAGTAG+AGG | + | chr3_1:83052352-83052371 | Msa0381070:CDS | 40.0% | |
ACATGCTATGGTTCACAGAA+TGG | - | chr3_1:83052471-83052490 | None:intergenic | 40.0% | |
ATTCTGTGAACCATAGCATG+TGG | + | chr3_1:83052470-83052489 | Msa0381070:intron | 40.0% | |
! | TGTGGCCTTCTTTTCTTCTT+TGG | + | chr3_1:83052488-83052507 | Msa0381070:intron | 40.0% |
! | GCCTTCTTTTCTTCTTTGGA+AGG | + | chr3_1:83052492-83052511 | Msa0381070:intron | 40.0% |
TCTTGTACCAAATGGGACAA+AGG | + | chr3_1:83052675-83052694 | Msa0381070:CDS | 40.0% | |
ATTTCTGCAGCTCCAAATCA+AGG | + | chr3_1:83052840-83052859 | Msa0381070:CDS | 40.0% | |
! | TTCTAAGCTCTGATGATCTG+TGG | + | chr3_1:83052986-83053005 | Msa0381070:CDS | 40.0% |
!! | TATCCCTGATGATGGCGAAT+GGG | + | chr3_1:83051535-83051554 | Msa0381070:CDS | 45.0% |
ATTCCCATTCGCCATCATCA+GGG | - | chr3_1:83051541-83051560 | None:intergenic | 45.0% | |
! | ATTGTGGTGGAGAGTCATCA+TGG | - | chr3_1:83051592-83051611 | None:intergenic | 45.0% |
! | ATTTTCTCCAAGCAGAAGCG+AGG | - | chr3_1:83051627-83051646 | None:intergenic | 45.0% |
TTCAGAAGGGGAGCAAAACA+TGG | - | chr3_1:83051672-83051691 | None:intergenic | 45.0% | |
TGTTTCCCTCAGCTTCAGAA+GGG | - | chr3_1:83051685-83051704 | None:intergenic | 45.0% | |
ATGTTTCCCTCAGCTTCAGA+AGG | - | chr3_1:83051686-83051705 | None:intergenic | 45.0% | |
GCTTGATGTGCCAGAATTTC+AGG | + | chr3_1:83051892-83051911 | Msa0381070:CDS | 45.0% | |
!!! | GCAGCACGAGGTTTTTTCTT+AGG | - | chr3_1:83051953-83051972 | None:intergenic | 45.0% |
! | CTTACATCTTTTGCAGCACG+AGG | - | chr3_1:83051965-83051984 | None:intergenic | 45.0% |
CCGATGGAGTGAATATCGTA+TGG | - | chr3_1:83052009-83052028 | None:intergenic | 45.0% | |
AGAGTCCAAGAAGAGCAAGA+AGG | + | chr3_1:83052177-83052196 | Msa0381070:CDS | 45.0% | |
GAAGCCAATGCAAGTGTAGA+TGG | + | chr3_1:83052226-83052245 | Msa0381070:CDS | 45.0% | |
!! | TTCCTCTGAGGTATAACCAC+TGG | - | chr3_1:83052260-83052279 | None:intergenic | 45.0% |
ATGTGTGAGGAAAACAGTGG+AGG | + | chr3_1:83052286-83052305 | Msa0381070:CDS | 45.0% | |
ACTGTGTCTCTCAACTCCAA+TGG | + | chr3_1:83052331-83052350 | Msa0381070:CDS | 45.0% | |
ATCCTCAAAGCCTCTATGCA+AGG | + | chr3_1:83052386-83052405 | Msa0381070:CDS | 45.0% | |
TCCTCAAAGCCTCTATGCAA+GGG | + | chr3_1:83052387-83052406 | Msa0381070:CDS | 45.0% | |
GAAAAGAAGGCCACATGCTA+TGG | - | chr3_1:83052483-83052502 | None:intergenic | 45.0% | |
!! | TATCCCTGATGATGGCGAAT+GGG | + | chr3_1:83051535-83051554 | Msa0381070:CDS | 45.0% |
ATTCCCATTCGCCATCATCA+GGG | - | chr3_1:83051541-83051560 | None:intergenic | 45.0% | |
! | ATTGTGGTGGAGAGTCATCA+TGG | - | chr3_1:83051592-83051611 | None:intergenic | 45.0% |
! | ATTTTCTCCAAGCAGAAGCG+AGG | - | chr3_1:83051627-83051646 | None:intergenic | 45.0% |
TTCAGAAGGGGAGCAAAACA+TGG | - | chr3_1:83051672-83051691 | None:intergenic | 45.0% | |
TGTTTCCCTCAGCTTCAGAA+GGG | - | chr3_1:83051685-83051704 | None:intergenic | 45.0% | |
ATGTTTCCCTCAGCTTCAGA+AGG | - | chr3_1:83051686-83051705 | None:intergenic | 45.0% | |
GCTTGATGTGCCAGAATTTC+AGG | + | chr3_1:83051892-83051911 | Msa0381070:CDS | 45.0% | |
!!! | GCAGCACGAGGTTTTTTCTT+AGG | - | chr3_1:83051953-83051972 | None:intergenic | 45.0% |
! | CTTACATCTTTTGCAGCACG+AGG | - | chr3_1:83051965-83051984 | None:intergenic | 45.0% |
CCGATGGAGTGAATATCGTA+TGG | - | chr3_1:83052009-83052028 | None:intergenic | 45.0% | |
AGAGTCCAAGAAGAGCAAGA+AGG | + | chr3_1:83052177-83052196 | Msa0381070:CDS | 45.0% | |
GAAGCCAATGCAAGTGTAGA+TGG | + | chr3_1:83052226-83052245 | Msa0381070:CDS | 45.0% | |
!! | TTCCTCTGAGGTATAACCAC+TGG | - | chr3_1:83052260-83052279 | None:intergenic | 45.0% |
ATGTGTGAGGAAAACAGTGG+AGG | + | chr3_1:83052286-83052305 | Msa0381070:CDS | 45.0% | |
ACTGTGTCTCTCAACTCCAA+TGG | + | chr3_1:83052331-83052350 | Msa0381070:CDS | 45.0% | |
ATCCTCAAAGCCTCTATGCA+AGG | + | chr3_1:83052386-83052405 | Msa0381070:CDS | 45.0% | |
TCCTCAAAGCCTCTATGCAA+GGG | + | chr3_1:83052387-83052406 | Msa0381070:CDS | 45.0% | |
GAAAAGAAGGCCACATGCTA+TGG | - | chr3_1:83052483-83052502 | None:intergenic | 45.0% | |
CTTGGAGCTATCCCTGATGA+TGG | + | chr3_1:83051527-83051546 | Msa0381070:CDS | 50.0% | |
!! | CTATCCCTGATGATGGCGAA+TGG | + | chr3_1:83051534-83051553 | Msa0381070:CDS | 50.0% |
CATTCCCATTCGCCATCATC+AGG | - | chr3_1:83051542-83051561 | None:intergenic | 50.0% | |
GATCAAACCTCGCTTCTGCT+TGG | + | chr3_1:83051617-83051636 | Msa0381070:CDS | 50.0% | |
GTTTCCCTCAGCTTCAGAAG+GGG | - | chr3_1:83051684-83051703 | None:intergenic | 50.0% | |
GTAGATGGACATACCTCCAG+TGG | + | chr3_1:83052241-83052260 | Msa0381070:CDS | 50.0% | |
!! | CTCTGAGGTATAACCACTGG+AGG | - | chr3_1:83052257-83052276 | None:intergenic | 50.0% |
CTCCAGTGGTTATACCTCAG+AGG | + | chr3_1:83052255-83052274 | Msa0381070:CDS | 50.0% | |
ACCCTTGCATAGAGGCTTTG+AGG | - | chr3_1:83052391-83052410 | None:intergenic | 50.0% | |
AATCTCGCCATGCCATCAAG+GGG | - | chr3_1:83052531-83052550 | None:intergenic | 50.0% | |
GAATCTCGCCATGCCATCAA+GGG | - | chr3_1:83052532-83052551 | None:intergenic | 50.0% | |
CTTGGAGCTATCCCTGATGA+TGG | + | chr3_1:83051527-83051546 | Msa0381070:CDS | 50.0% | |
!! | CTATCCCTGATGATGGCGAA+TGG | + | chr3_1:83051534-83051553 | Msa0381070:CDS | 50.0% |
CATTCCCATTCGCCATCATC+AGG | - | chr3_1:83051542-83051561 | None:intergenic | 50.0% | |
GATCAAACCTCGCTTCTGCT+TGG | + | chr3_1:83051617-83051636 | Msa0381070:CDS | 50.0% | |
GTTTCCCTCAGCTTCAGAAG+GGG | - | chr3_1:83051684-83051703 | None:intergenic | 50.0% | |
GTAGATGGACATACCTCCAG+TGG | + | chr3_1:83052241-83052260 | Msa0381070:CDS | 50.0% | |
!! | CTCTGAGGTATAACCACTGG+AGG | - | chr3_1:83052257-83052276 | None:intergenic | 50.0% |
CTCCAGTGGTTATACCTCAG+AGG | + | chr3_1:83052255-83052274 | Msa0381070:CDS | 50.0% | |
ACCCTTGCATAGAGGCTTTG+AGG | - | chr3_1:83052391-83052410 | None:intergenic | 50.0% | |
AATCTCGCCATGCCATCAAG+GGG | - | chr3_1:83052531-83052550 | None:intergenic | 50.0% | |
GAATCTCGCCATGCCATCAA+GGG | - | chr3_1:83052532-83052551 | None:intergenic | 50.0% | |
!! | TTGCTCCCCTTCTGAAGCTG+AGG | + | chr3_1:83051676-83051695 | Msa0381070:CDS | 55.0% |
!! | TGCTCCCCTTCTGAAGCTGA+GGG | + | chr3_1:83051677-83051696 | Msa0381070:CDS | 55.0% |
TGGTCACACTAGCCCCTTGA+TGG | + | chr3_1:83052516-83052535 | Msa0381070:intron | 55.0% | |
! | ACACTAGCCCCTTGATGGCA+TGG | + | chr3_1:83052521-83052540 | Msa0381070:intron | 55.0% |
CGAATCTCGCCATGCCATCA+AGG | - | chr3_1:83052533-83052552 | None:intergenic | 55.0% | |
!! | TTGCTCCCCTTCTGAAGCTG+AGG | + | chr3_1:83051676-83051695 | Msa0381070:CDS | 55.0% |
!! | TGCTCCCCTTCTGAAGCTGA+GGG | + | chr3_1:83051677-83051696 | Msa0381070:CDS | 55.0% |
TGGTCACACTAGCCCCTTGA+TGG | + | chr3_1:83052516-83052535 | Msa0381070:intron | 55.0% | |
! | ACACTAGCCCCTTGATGGCA+TGG | + | chr3_1:83052521-83052540 | Msa0381070:intron | 55.0% |
CGAATCTCGCCATGCCATCA+AGG | - | chr3_1:83052533-83052552 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 83051518 | 83053086 | 83051518 | ID=Msa0381070;Name=Msa0381070 |
chr3_1 | mRNA | 83051518 | 83053086 | 83051518 | ID=Msa0381070-mRNA-1;Parent=Msa0381070;Name=Msa0381070-mRNA-1;_AED=0.12;_eAED=0.13;_QI=0|0|0|1|1|1|5|0|316 |
chr3_1 | exon | 83051518 | 83051979 | 83051518 | ID=Msa0381070-mRNA-1:exon:21285;Parent=Msa0381070-mRNA-1 |
chr3_1 | exon | 83052154 | 83052408 | 83052154 | ID=Msa0381070-mRNA-1:exon:21286;Parent=Msa0381070-mRNA-1 |
chr3_1 | exon | 83052631 | 83052696 | 83052631 | ID=Msa0381070-mRNA-1:exon:21287;Parent=Msa0381070-mRNA-1 |
chr3_1 | exon | 83052796 | 83052861 | 83052796 | ID=Msa0381070-mRNA-1:exon:21288;Parent=Msa0381070-mRNA-1 |
chr3_1 | exon | 83052985 | 83053086 | 83052985 | ID=Msa0381070-mRNA-1:exon:21289;Parent=Msa0381070-mRNA-1 |
chr3_1 | CDS | 83051518 | 83051979 | 83051518 | ID=Msa0381070-mRNA-1:cds;Parent=Msa0381070-mRNA-1 |
chr3_1 | CDS | 83052154 | 83052408 | 83052154 | ID=Msa0381070-mRNA-1:cds;Parent=Msa0381070-mRNA-1 |
chr3_1 | CDS | 83052631 | 83052696 | 83052631 | ID=Msa0381070-mRNA-1:cds;Parent=Msa0381070-mRNA-1 |
chr3_1 | CDS | 83052796 | 83052861 | 83052796 | ID=Msa0381070-mRNA-1:cds;Parent=Msa0381070-mRNA-1 |
chr3_1 | CDS | 83052985 | 83053086 | 83052985 | ID=Msa0381070-mRNA-1:cds;Parent=Msa0381070-mRNA-1 |
Gene Sequence |
Protein sequence |