Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381190 | RHN70377.1 | 80.147 | 544 | 36 | 4 | 1 | 544 | 1 | 472 | 0.0 | 766 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381190 | sp|F4IXE7|IDM1_ARATH | 30.966 | 507 | 279 | 16 | 51 | 536 | 567 | 1023 | 1.06e-57 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381190 | A0A396J566 | 80.147 | 544 | 36 | 4 | 1 | 544 | 1 | 472 | 0.0 | 766 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0381190 | TR | PHD |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381190 | MtrunA17_Chr3g0134851 | 80.147 | 544 | 36 | 4 | 1 | 544 | 1 | 472 | 0.0 | 766 |
| Msa0381190 | MtrunA17_Chr7g0270101 | 51.322 | 643 | 177 | 13 | 4 | 537 | 173 | 788 | 0.0 | 557 |
| Msa0381190 | MtrunA17_Chr3g0134821 | 57.496 | 567 | 185 | 10 | 4 | 538 | 292 | 834 | 0.0 | 549 |
| Msa0381190 | MtrunA17_Chr3g0134811 | 48.974 | 682 | 183 | 12 | 3 | 538 | 131 | 793 | 0.0 | 543 |
| Msa0381190 | MtrunA17_Chr5g0407211 | 57.175 | 439 | 156 | 9 | 109 | 536 | 2 | 419 | 1.69e-164 | 474 |
| Msa0381190 | MtrunA17_Chr5g0407251 | 56.492 | 439 | 159 | 9 | 109 | 536 | 2 | 419 | 7.11e-162 | 467 |
| Msa0381190 | MtrunA17_Chr5g0430361 | 37.002 | 527 | 261 | 15 | 30 | 538 | 586 | 1059 | 7.42e-92 | 303 |
| Msa0381190 | MtrunA17_Chr3g0105291 | 36.832 | 505 | 269 | 12 | 46 | 536 | 540 | 1008 | 1.27e-86 | 290 |
| Msa0381190 | MtrunA17_Chr2g0316251 | 34.234 | 444 | 244 | 10 | 106 | 536 | 758 | 1166 | 3.73e-68 | 239 |
| Msa0381190 | MtrunA17_Chr1g0205451 | 33.976 | 415 | 234 | 7 | 106 | 510 | 602 | 986 | 2.74e-61 | 219 |
| Msa0381190 | MtrunA17_Chr1g0185491 | 32.360 | 445 | 269 | 12 | 106 | 543 | 808 | 1227 | 5.70e-61 | 218 |
| Msa0381190 | MtrunA17_Chr1g0182481 | 26.667 | 435 | 218 | 14 | 144 | 524 | 496 | 883 | 2.16e-39 | 153 |
| Msa0381190 | MtrunA17_Chr7g0259981 | 30.100 | 299 | 169 | 8 | 223 | 517 | 13 | 275 | 2.81e-34 | 131 |
| Msa0381190 | MtrunA17_Chr1g0179841 | 25.495 | 455 | 229 | 15 | 144 | 531 | 386 | 797 | 9.39e-32 | 130 |
| Msa0381190 | MtrunA17_Chr7g0265211 | 25.373 | 469 | 230 | 17 | 136 | 534 | 527 | 945 | 2.74e-30 | 126 |
| Msa0381190 | MtrunA17_Chr4g0028111 | 23.515 | 421 | 207 | 11 | 157 | 509 | 187 | 560 | 4.73e-21 | 97.1 |
| Msa0381190 | MtrunA17_Chr4g0055731 | 24.500 | 400 | 221 | 13 | 138 | 530 | 138 | 463 | 5.97e-21 | 95.9 |
| Msa0381190 | MtrunA17_Chr4g0027811 | 23.276 | 464 | 223 | 14 | 108 | 521 | 182 | 562 | 8.49e-21 | 96.3 |
| Msa0381190 | MtrunA17_Chr4g0025251 | 26.482 | 253 | 140 | 8 | 295 | 520 | 453 | 686 | 7.45e-19 | 90.5 |
| Msa0381190 | MtrunA17_Chr2g0320451 | 25.000 | 192 | 135 | 4 | 348 | 536 | 838 | 1023 | 3.43e-15 | 79.0 |
| Msa0381190 | MtrunA17_Chr2g0320451 | 30.093 | 216 | 107 | 7 | 62 | 269 | 421 | 600 | 1.47e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381190 | AT5G58610.4 | 35.729 | 501 | 266 | 11 | 67 | 542 | 314 | 783 | 1.03e-83 | 278 |
| Msa0381190 | AT5G58610.8 | 35.729 | 501 | 266 | 11 | 67 | 542 | 545 | 1014 | 1.90e-82 | 277 |
| Msa0381190 | AT5G58610.2 | 35.729 | 501 | 266 | 11 | 67 | 542 | 545 | 1014 | 1.90e-82 | 277 |
| Msa0381190 | AT5G58610.3 | 35.729 | 501 | 266 | 11 | 67 | 542 | 545 | 1014 | 2.73e-82 | 278 |
| Msa0381190 | AT5G58610.7 | 35.729 | 501 | 266 | 11 | 67 | 542 | 536 | 1005 | 3.54e-82 | 278 |
| Msa0381190 | AT5G58610.5 | 35.729 | 501 | 266 | 11 | 67 | 542 | 536 | 1005 | 3.80e-82 | 277 |
| Msa0381190 | AT5G58610.1 | 34.608 | 497 | 251 | 12 | 67 | 542 | 536 | 979 | 5.72e-75 | 257 |
| Msa0381190 | AT5G58610.6 | 34.608 | 497 | 251 | 12 | 67 | 542 | 536 | 979 | 8.76e-75 | 256 |
| Msa0381190 | AT5G58610.10 | 34.932 | 438 | 229 | 11 | 67 | 479 | 545 | 951 | 2.14e-66 | 232 |
| Msa0381190 | AT5G58610.9 | 34.932 | 438 | 229 | 11 | 67 | 479 | 536 | 942 | 2.36e-66 | 232 |
| Msa0381190 | AT5G36740.5 | 32.644 | 435 | 257 | 9 | 118 | 542 | 547 | 955 | 4.28e-65 | 230 |
| Msa0381190 | AT5G36740.1 | 32.644 | 435 | 257 | 9 | 118 | 542 | 547 | 955 | 4.28e-65 | 230 |
| Msa0381190 | AT5G36740.4 | 32.054 | 443 | 259 | 10 | 118 | 542 | 394 | 812 | 7.61e-62 | 220 |
| Msa0381190 | AT1G05380.3 | 32.273 | 440 | 265 | 9 | 106 | 539 | 516 | 928 | 7.72e-59 | 212 |
| Msa0381190 | AT1G05380.1 | 32.273 | 440 | 265 | 9 | 106 | 539 | 516 | 928 | 7.72e-59 | 212 |
| Msa0381190 | AT1G05380.2 | 32.273 | 440 | 265 | 9 | 106 | 539 | 516 | 928 | 7.72e-59 | 212 |
| Msa0381190 | AT3G14980.6 | 30.966 | 507 | 279 | 16 | 51 | 536 | 567 | 1023 | 1.08e-58 | 211 |
| Msa0381190 | AT3G14980.1 | 30.966 | 507 | 279 | 16 | 51 | 536 | 567 | 1023 | 1.08e-58 | 211 |
| Msa0381190 | AT3G14980.2 | 30.966 | 507 | 279 | 16 | 51 | 536 | 567 | 1023 | 1.08e-58 | 211 |
| Msa0381190 | AT3G14980.5 | 31.041 | 509 | 276 | 17 | 51 | 536 | 522 | 978 | 1.12e-58 | 211 |
| Msa0381190 | AT3G14980.3 | 30.966 | 507 | 279 | 16 | 51 | 536 | 567 | 1023 | 1.31e-58 | 211 |
| Msa0381190 | AT5G36670.4 | 28.647 | 569 | 339 | 15 | 6 | 542 | 436 | 969 | 5.95e-57 | 206 |
| Msa0381190 | AT5G36670.5 | 28.647 | 569 | 339 | 15 | 6 | 542 | 436 | 969 | 5.95e-57 | 206 |
| Msa0381190 | AT5G36670.2 | 30.675 | 489 | 290 | 13 | 6 | 478 | 436 | 891 | 5.99e-56 | 202 |
| Msa0381190 | AT5G36740.2 | 30.675 | 489 | 290 | 13 | 6 | 478 | 436 | 891 | 5.99e-56 | 202 |
| Msa0381190 | AT5G36740.3 | 30.675 | 489 | 290 | 13 | 6 | 478 | 436 | 891 | 5.99e-56 | 202 |
| Msa0381190 | AT5G58610.11 | 33.827 | 405 | 212 | 11 | 67 | 446 | 536 | 909 | 4.53e-54 | 197 |
| Msa0381190 | AT5G63900.1 | 36.562 | 320 | 169 | 9 | 223 | 539 | 255 | 543 | 5.69e-54 | 192 |
| Msa0381190 | AT5G36670.3 | 28.250 | 577 | 341 | 16 | 6 | 542 | 283 | 826 | 6.53e-54 | 197 |
| Msa0381190 | AT4G14920.2 | 28.492 | 537 | 304 | 17 | 14 | 536 | 513 | 983 | 8.37e-54 | 197 |
| Msa0381190 | AT4G14920.1 | 28.492 | 537 | 304 | 17 | 14 | 536 | 513 | 983 | 8.37e-54 | 197 |
| Msa0381190 | AT4G14920.3 | 28.492 | 537 | 304 | 17 | 14 | 536 | 513 | 983 | 8.70e-54 | 197 |
| Msa0381190 | AT5G36670.1 | 28.250 | 577 | 341 | 16 | 6 | 542 | 436 | 979 | 1.58e-53 | 196 |
| Msa0381190 | AT2G37520.1 | 27.483 | 433 | 227 | 14 | 144 | 525 | 410 | 806 | 3.45e-38 | 150 |
| Msa0381190 | AT3G53680.1 | 27.842 | 431 | 227 | 14 | 144 | 525 | 427 | 822 | 1.05e-37 | 149 |
| Msa0381190 | AT3G53680.2 | 27.842 | 431 | 227 | 14 | 144 | 525 | 429 | 824 | 1.22e-37 | 148 |
| Msa0381190 | AT3G14980.4 | 29.904 | 418 | 222 | 16 | 51 | 447 | 567 | 934 | 2.52e-37 | 147 |
| Msa0381190 | AT2G36720.1 | 24.138 | 464 | 244 | 11 | 144 | 541 | 557 | 978 | 4.39e-35 | 141 |
| Msa0381190 | AT2G36720.2 | 24.138 | 464 | 244 | 11 | 144 | 541 | 557 | 978 | 4.39e-35 | 141 |
| Msa0381190 | AT2G27980.1 | 25.957 | 470 | 236 | 13 | 144 | 543 | 637 | 1064 | 7.20e-31 | 128 |
Find 99 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATACTTTCTTTGAATTTC+AGG | 0.141944 | 3_1:-83181498 | Msa0381190:CDS |
| ACATGTTCTGTTTGTTGTTT+TGG | 0.157762 | 3_1:-83182382 | Msa0381190:CDS |
| AGATCATTCCCAAGCTTATT+TGG | 0.196412 | 3_1:+83182010 | None:intergenic |
| GTGGCAACCATAAGGATTTA+TGG | 0.239122 | 3_1:-83181734 | Msa0381190:CDS |
| TGGTTTCTATACTGCGATTA+TGG | 0.240807 | 3_1:-83181780 | Msa0381190:CDS |
| TGCAAATTCTTGTTTGCGTT+TGG | 0.242204 | 3_1:+83182228 | None:intergenic |
| ACCATCCAAAAGTATCTTCT+TGG | 0.296021 | 3_1:-83182551 | Msa0381190:CDS |
| GTTGATAAAGGATGGAGTTT+TGG | 0.297915 | 3_1:-83182719 | Msa0381190:CDS |
| GTCTTCCAAGAAGATACTTT+TGG | 0.305890 | 3_1:+83182546 | None:intergenic |
| ACAAGCATGAGCCTCAAATT+TGG | 0.327395 | 3_1:+83182588 | None:intergenic |
| TCGTTCCACTCTGATTGTTT+AGG | 0.327474 | 3_1:-83182325 | Msa0381190:CDS |
| CTAAAGAGGGAAGGTATAAG+AGG | 0.337184 | 3_1:-83182754 | Msa0381190:CDS |
| ACAAGAGATACTCCCTCTTT+TGG | 0.339052 | 3_1:+83182654 | None:intergenic |
| CGGAACTTCATTGTTGGACT+TGG | 0.361651 | 3_1:-83182524 | Msa0381190:CDS |
| GTTTCTAAAGCCTCTAGTTC+CGG | 0.368804 | 3_1:-83182901 | Msa0381190:CDS |
| GCAAATTCTTGTTTGCGTTT+GGG | 0.380503 | 3_1:+83182229 | None:intergenic |
| CAGACCATCCGGATCTCGTT+TGG | 0.386226 | 3_1:+83182300 | None:intergenic |
| CCAAGTGTCTATAGCATCCT+TGG | 0.387385 | 3_1:+83181577 | None:intergenic |
| GGAACGGATAAATCAACTTC+TGG | 0.396861 | 3_1:-83182928 | Msa0381190:CDS |
| ACATGTTCCCACAAACTTCA+TGG | 0.397494 | 3_1:+83182062 | None:intergenic |
| ATTCACTCTCACCAAATTTG+AGG | 0.418669 | 3_1:-83182599 | Msa0381190:CDS |
| TGTGTAAAGGCAACAAGAAT+TGG | 0.422575 | 3_1:-83182145 | Msa0381190:CDS |
| CATAAGGATTTATGGTCAAA+AGG | 0.428606 | 3_1:-83181726 | Msa0381190:CDS |
| CAAACGAGATCCGGATGGTC+TGG | 0.433972 | 3_1:-83182299 | Msa0381190:CDS |
| AAGAAACGTTTGAACTTTCG+TGG | 0.439001 | 3_1:-83181800 | Msa0381190:CDS |
| AGTTGATTAACTTAGGAGTT+GGG | 0.439665 | 3_1:-83181619 | Msa0381190:CDS |
| GAGACACTTTCTTTGTTAAG+TGG | 0.443344 | 3_1:+83181455 | None:intergenic |
| AGACCATCCGGATCTCGTTT+GGG | 0.445042 | 3_1:+83182301 | None:intergenic |
| TTGTAATGCTGAAGCAAAAT+CGG | 0.448060 | 3_1:-83182455 | Msa0381190:CDS |
| TTTAGGTCCCAAACGAGATC+CGG | 0.450042 | 3_1:-83182308 | Msa0381190:CDS |
| ATGTGACTAGAAACTTCATT+TGG | 0.453838 | 3_1:+83182118 | None:intergenic |
| GGAAGACGGAACTTCATTGT+TGG | 0.455884 | 3_1:-83182530 | Msa0381190:CDS |
| TCTGAGCTCAGCCAATCAAA+AGG | 0.457877 | 3_1:-83182485 | Msa0381190:CDS |
| ATTGACAATGTTACCAAAAG+AGG | 0.459673 | 3_1:-83182667 | Msa0381190:CDS |
| GAAGTGTTCTCAGTTGATAA+AGG | 0.461389 | 3_1:-83182731 | Msa0381190:CDS |
| CGTAAATTGACTGTGGCTCT+TGG | 0.463118 | 3_1:-83181911 | Msa0381190:CDS |
| GAGGAACAGTTGATTAACTT+AGG | 0.464976 | 3_1:-83181626 | Msa0381190:CDS |
| GGTGTGCTGCGTGAGAGTTT+TGG | 0.469338 | 3_1:-83181890 | Msa0381190:CDS |
| TGTTGTTGTTGTTCCTTCCT+CGG | 0.473116 | 3_1:+83183011 | None:intergenic |
| CTGAGCTCAGCCAATCAAAA+GGG | 0.474959 | 3_1:-83182484 | Msa0381190:CDS |
| CTAGGAATACCAAATAAGCT+TGG | 0.478097 | 3_1:-83182019 | Msa0381190:CDS |
| TATACTGCGATTATGGAGAA+AGG | 0.478537 | 3_1:-83181773 | Msa0381190:CDS |
| CCGTTCCCTCAGATTCTCTC+AGG | 0.480436 | 3_1:+83182944 | None:intergenic |
| TAGGAATACCAAATAAGCTT+GGG | 0.480908 | 3_1:-83182018 | Msa0381190:CDS |
| ATACTGCGATTATGGAGAAA+GGG | 0.484197 | 3_1:-83181772 | Msa0381190:CDS |
| ATTTCACTTGGGGTGTGTAA+AGG | 0.484386 | 3_1:-83182158 | Msa0381190:CDS |
| CAGTTGATTAACTTAGGAGT+TGG | 0.492298 | 3_1:-83181620 | Msa0381190:CDS |
| TATAATGTGAGTTGTGATGA+TGG | 0.496882 | 3_1:-83181968 | Msa0381190:CDS |
| AGCTCAGAGCTTTCATTCGA+CGG | 0.500191 | 3_1:+83182500 | None:intergenic |
| TAACTTAGGAGTTGGGAGCT+TGG | 0.501005 | 3_1:-83181612 | Msa0381190:CDS |
| AGCTTGGGAATGATCTAACT+TGG | 0.501787 | 3_1:-83182003 | Msa0381190:CDS |
| GGATAAATCAACTTCTGGTA+AGG | 0.504650 | 3_1:-83182923 | Msa0381190:CDS |
| AAAGAGGGAAAGTACTAAAG+AGG | 0.506275 | 3_1:-83182768 | Msa0381190:CDS |
| TGAGTTCTGTGGCAACCATA+AGG | 0.512428 | 3_1:-83181742 | Msa0381190:CDS |
| CGGATGGTCTGGATGGTACA+TGG | 0.516273 | 3_1:-83182288 | Msa0381190:CDS |
| AAGAGGGAAAGTACTAAAGA+GGG | 0.517147 | 3_1:-83182767 | Msa0381190:CDS |
| AATGTGCCGTTTGTTGATGA+AGG | 0.520351 | 3_1:-83181654 | Msa0381190:CDS |
| GTTTCTAATTCAGTGGGTAG+TGG | 0.524886 | 3_1:-83182793 | Msa0381190:CDS |
| CCAAGGATGCTATAGACACT+TGG | 0.526403 | 3_1:-83181577 | Msa0381190:CDS |
| TAAAGAGGGAAGGTATAAGA+GGG | 0.542556 | 3_1:-83182753 | Msa0381190:CDS |
| CATGTACCATCCAGACCATC+CGG | 0.542947 | 3_1:+83182289 | None:intergenic |
| CAATCAGAGTGGAACGAAGA+AGG | 0.546313 | 3_1:+83182331 | None:intergenic |
| ATCAGAAGTTTCTAATTCAG+TGG | 0.547714 | 3_1:-83182800 | Msa0381190:CDS |
| TCAGTGGGTAGTGGTAAAAG+AGG | 0.549198 | 3_1:-83182784 | Msa0381190:CDS |
| ATGTGAACGAAAATTTCACT+TGG | 0.549257 | 3_1:-83182170 | Msa0381190:CDS |
| TGTTCTCAGTTGATAAAGGA+TGG | 0.550925 | 3_1:-83182727 | Msa0381190:CDS |
| CGAGATCCGGATGGTCTGGA+TGG | 0.554408 | 3_1:-83182295 | Msa0381190:CDS |
| CAGTGGGTAGTGGTAAAAGA+GGG | 0.562756 | 3_1:-83182783 | Msa0381190:CDS |
| CAAGCCCCTTCATCAACAAA+CGG | 0.563396 | 3_1:+83181648 | None:intergenic |
| AAAAGTATCTTCTTGGAAGA+CGG | 0.564085 | 3_1:-83182544 | Msa0381190:CDS |
| TGTGAACGAAAATTTCACTT+GGG | 0.566723 | 3_1:-83182169 | Msa0381190:CDS |
| AGATCGCCTGAGAGAATCTG+AGG | 0.577144 | 3_1:-83182950 | Msa0381190:CDS |
| TCAGAAGTTTCTAATTCAGT+GGG | 0.578275 | 3_1:-83182799 | Msa0381190:CDS |
| CCTGAGAGAATCTGAGGGAA+CGG | 0.579608 | 3_1:-83182944 | Msa0381190:CDS |
| CTGATGAGGAGTTTCATCAA+AGG | 0.590006 | 3_1:-83181937 | Msa0381190:CDS |
| GGTATCAAGATCAACTTCAA+AGG | 0.591691 | 3_1:-83182851 | Msa0381190:CDS |
| ATGTGCCGTTTGTTGATGAA+GGG | 0.591926 | 3_1:-83181653 | Msa0381190:CDS |
| TTTAACAGAACCGGAACTAG+AGG | 0.594122 | 3_1:+83182891 | None:intergenic |
| CGACAGAGAGAATCCGAGGA+AGG | 0.596626 | 3_1:-83183024 | Msa0381190:CDS |
| TTATGTCTAGAGAAACTACT+AGG | 0.598338 | 3_1:-83182037 | Msa0381190:CDS |
| AAAGCGACAGAGAGAATCCG+AGG | 0.599141 | 3_1:-83183028 | Msa0381190:CDS |
| GGGAAAGTACTAAAGAGGGA+AGG | 0.603607 | 3_1:-83182763 | Msa0381190:CDS |
| TACTGCGATTATGGAGAAAG+GGG | 0.609394 | 3_1:-83181771 | Msa0381190:CDS |
| CATATTCTACAACAGCAACT+CGG | 0.614325 | 3_1:+83182259 | None:intergenic |
| TGTGCCGTTTGTTGATGAAG+GGG | 0.619488 | 3_1:-83181652 | Msa0381190:CDS |
| TTGACAATGTTACCAAAAGA+GGG | 0.620789 | 3_1:-83182666 | Msa0381190:CDS |
| AGTGTCTATAGCATCCTTGG+AGG | 0.622116 | 3_1:+83181580 | None:intergenic |
| TTTGTTGATGAAGGGGCTTG+AGG | 0.622358 | 3_1:-83181645 | Msa0381190:CDS |
| GTGAACGAAAATTTCACTTG+GGG | 0.624887 | 3_1:-83182168 | Msa0381190:CDS |
| AAATGAAGTTTCTAGTCACA+TGG | 0.625461 | 3_1:-83182116 | Msa0381190:CDS |
| AGAGGGAGTATCTCTTGTGA+AGG | 0.627844 | 3_1:-83182649 | Msa0381190:CDS |
| TGAGCTCAGCCAATCAAAAG+GGG | 0.629047 | 3_1:-83182483 | Msa0381190:CDS |
| GGTGACTTAATATTATGTGA+TGG | 0.647953 | 3_1:-83182358 | Msa0381190:CDS |
| GATCGCCTGAGAGAATCTGA+GGG | 0.652065 | 3_1:-83182949 | Msa0381190:CDS |
| GGTCCCAAACGAGATCCGGA+TGG | 0.671675 | 3_1:-83182304 | Msa0381190:CDS |
| TGGTAACATTGTCAATACCA+CGG | 0.676702 | 3_1:+83182674 | None:intergenic |
| ACTGCGATTATGGAGAAAGG+GGG | 0.694924 | 3_1:-83181770 | Msa0381190:CDS |
| AAGGAAGCGTAAATTGACTG+TGG | 0.704717 | 3_1:-83181918 | Msa0381190:CDS |
| TGGGACCTAAACAATCAGAG+TGG | 0.741486 | 3_1:+83182320 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATTATTGAAAAAAATAAT+TGG | - | chr3_1:83182412-83182431 | Msa0381190:CDS | 10.0% |
| !! | ACATTATTGAAAAAAATAAT+TGG | - | chr3_1:83182412-83182431 | Msa0381190:CDS | 10.0% |
| !!! | ATCAAATCTTTTTTAGATAA+AGG | + | chr3_1:83182651-83182670 | None:intergenic | 15.0% |
| !!! | ATCAAATCTTTTTTAGATAA+AGG | + | chr3_1:83182651-83182670 | None:intergenic | 15.0% |
| !!! | TTGTCTTCGATATTTTTTTT+TGG | + | chr3_1:83182826-83182845 | None:intergenic | 20.0% |
| !! | AAAAAAAAATATCGAAGACA+AGG | - | chr3_1:83182825-83182844 | Msa0381190:CDS | 20.0% |
| !! | TTATACTTTCTTTGAATTTC+AGG | - | chr3_1:83183004-83183023 | Msa0381190:CDS | 20.0% |
| !!! | TTGTCTTCGATATTTTTTTT+TGG | + | chr3_1:83182826-83182845 | None:intergenic | 20.0% |
| !! | AAAAAAAAATATCGAAGACA+AGG | - | chr3_1:83182825-83182844 | Msa0381190:CDS | 20.0% |
| !! | TTATACTTTCTTTGAATTTC+AGG | - | chr3_1:83183004-83183023 | Msa0381190:CDS | 20.0% |
| ! | TAAAAAAGCTACACTAACAA+CGG | - | chr3_1:83181630-83181649 | Msa0381190:CDS | 25.0% |
| !!! | TCTTCGATATTTTTTTTTGG+TGG | + | chr3_1:83182823-83182842 | None:intergenic | 25.0% |
| ! | TAAAAAAGCTACACTAACAA+CGG | - | chr3_1:83181630-83181649 | Msa0381190:CDS | 25.0% |
| !!! | TCTTCGATATTTTTTTTTGG+TGG | + | chr3_1:83182823-83182842 | None:intergenic | 25.0% |
| !!! | TGTAGCTTTTTTAACAGAAC+CGG | + | chr3_1:83181623-83181642 | None:intergenic | 30.0% |
| ATCAGAAGTTTCTAATTCAG+TGG | - | chr3_1:83181702-83181721 | Msa0381190:CDS | 30.0% | |
| TCAGAAGTTTCTAATTCAGT+GGG | - | chr3_1:83181703-83181722 | Msa0381190:CDS | 30.0% | |
| ATTGACAATGTTACCAAAAG+AGG | - | chr3_1:83181835-83181854 | Msa0381190:CDS | 30.0% | |
| TTGACAATGTTACCAAAAGA+GGG | - | chr3_1:83181836-83181855 | Msa0381190:CDS | 30.0% | |
| !! | AAAAGTATCTTCTTGGAAGA+CGG | - | chr3_1:83181958-83181977 | Msa0381190:CDS | 30.0% |
| TTGTAATGCTGAAGCAAAAT+CGG | - | chr3_1:83182047-83182066 | Msa0381190:CDS | 30.0% | |
| !!! | ACATGTTCTGTTTGTTGTTT+TGG | - | chr3_1:83182120-83182139 | Msa0381190:CDS | 30.0% |
| !!! | CATGTTCTGTTTGTTGTTTT+GGG | - | chr3_1:83182121-83182140 | Msa0381190:CDS | 30.0% |
| !!! | ATGTTCTGTTTGTTGTTTTG+GGG | - | chr3_1:83182122-83182141 | Msa0381190:CDS | 30.0% |
| GGTGACTTAATATTATGTGA+TGG | - | chr3_1:83182144-83182163 | Msa0381190:CDS | 30.0% | |
| ATGTGAACGAAAATTTCACT+TGG | - | chr3_1:83182332-83182351 | Msa0381190:CDS | 30.0% | |
| TGTGAACGAAAATTTCACTT+GGG | - | chr3_1:83182333-83182352 | Msa0381190:CDS | 30.0% | |
| ATGTGACTAGAAACTTCATT+TGG | + | chr3_1:83182387-83182406 | None:intergenic | 30.0% | |
| !! | AAATGAAGTTTCTAGTCACA+TGG | - | chr3_1:83182386-83182405 | Msa0381190:CDS | 30.0% |
| TTATGTCTAGAGAAACTACT+AGG | - | chr3_1:83182465-83182484 | Msa0381190:CDS | 30.0% | |
| TAGGAATACCAAATAAGCTT+GGG | - | chr3_1:83182484-83182503 | Msa0381190:CDS | 30.0% | |
| TATAATGTGAGTTGTGATGA+TGG | - | chr3_1:83182534-83182553 | Msa0381190:CDS | 30.0% | |
| ! | CTTTTGACCATAAATCCTTA+TGG | + | chr3_1:83182778-83182797 | None:intergenic | 30.0% |
| CATAAGGATTTATGGTCAAA+AGG | - | chr3_1:83182776-83182795 | Msa0381190:CDS | 30.0% | |
| AGTTGATTAACTTAGGAGTT+GGG | - | chr3_1:83182883-83182902 | Msa0381190:CDS | 30.0% | |
| !!! | TGTAGCTTTTTTAACAGAAC+CGG | + | chr3_1:83181623-83181642 | None:intergenic | 30.0% |
| ATCAGAAGTTTCTAATTCAG+TGG | - | chr3_1:83181702-83181721 | Msa0381190:CDS | 30.0% | |
| TCAGAAGTTTCTAATTCAGT+GGG | - | chr3_1:83181703-83181722 | Msa0381190:CDS | 30.0% | |
| ATTGACAATGTTACCAAAAG+AGG | - | chr3_1:83181835-83181854 | Msa0381190:CDS | 30.0% | |
| TTGACAATGTTACCAAAAGA+GGG | - | chr3_1:83181836-83181855 | Msa0381190:CDS | 30.0% | |
| !! | AAAAGTATCTTCTTGGAAGA+CGG | - | chr3_1:83181958-83181977 | Msa0381190:CDS | 30.0% |
| TTGTAATGCTGAAGCAAAAT+CGG | - | chr3_1:83182047-83182066 | Msa0381190:CDS | 30.0% | |
| !!! | ACATGTTCTGTTTGTTGTTT+TGG | - | chr3_1:83182120-83182139 | Msa0381190:CDS | 30.0% |
| !!! | CATGTTCTGTTTGTTGTTTT+GGG | - | chr3_1:83182121-83182140 | Msa0381190:CDS | 30.0% |
| !!! | ATGTTCTGTTTGTTGTTTTG+GGG | - | chr3_1:83182122-83182141 | Msa0381190:CDS | 30.0% |
| GGTGACTTAATATTATGTGA+TGG | - | chr3_1:83182144-83182163 | Msa0381190:CDS | 30.0% | |
| ATGTGAACGAAAATTTCACT+TGG | - | chr3_1:83182332-83182351 | Msa0381190:CDS | 30.0% | |
| TGTGAACGAAAATTTCACTT+GGG | - | chr3_1:83182333-83182352 | Msa0381190:CDS | 30.0% | |
| ATGTGACTAGAAACTTCATT+TGG | + | chr3_1:83182387-83182406 | None:intergenic | 30.0% | |
| !! | AAATGAAGTTTCTAGTCACA+TGG | - | chr3_1:83182386-83182405 | Msa0381190:CDS | 30.0% |
| TTATGTCTAGAGAAACTACT+AGG | - | chr3_1:83182465-83182484 | Msa0381190:CDS | 30.0% | |
| TAGGAATACCAAATAAGCTT+GGG | - | chr3_1:83182484-83182503 | Msa0381190:CDS | 30.0% | |
| TATAATGTGAGTTGTGATGA+TGG | - | chr3_1:83182534-83182553 | Msa0381190:CDS | 30.0% | |
| ! | CTTTTGACCATAAATCCTTA+TGG | + | chr3_1:83182778-83182797 | None:intergenic | 30.0% |
| CATAAGGATTTATGGTCAAA+AGG | - | chr3_1:83182776-83182795 | Msa0381190:CDS | 30.0% | |
| AGTTGATTAACTTAGGAGTT+GGG | - | chr3_1:83182883-83182902 | Msa0381190:CDS | 30.0% | |
| GGATAAATCAACTTCTGGTA+AGG | - | chr3_1:83181579-83181598 | Msa0381190:CDS | 35.0% | |
| GGTATCAAGATCAACTTCAA+AGG | - | chr3_1:83181651-83181670 | Msa0381190:CDS | 35.0% | |
| !! | AAAGAGGGAAAGTACTAAAG+AGG | - | chr3_1:83181734-83181753 | Msa0381190:CDS | 35.0% |
| !! | AAGAGGGAAAGTACTAAAGA+GGG | - | chr3_1:83181735-83181754 | Msa0381190:CDS | 35.0% |
| ! | TAAAGAGGGAAGGTATAAGA+GGG | - | chr3_1:83181749-83181768 | Msa0381190:CDS | 35.0% |
| !! | GAAGTGTTCTCAGTTGATAA+AGG | - | chr3_1:83181771-83181790 | Msa0381190:CDS | 35.0% |
| !! | TGTTCTCAGTTGATAAAGGA+TGG | - | chr3_1:83181775-83181794 | Msa0381190:CDS | 35.0% |
| !! | GTTGATAAAGGATGGAGTTT+TGG | - | chr3_1:83181783-83181802 | Msa0381190:CDS | 35.0% |
| TGGTAACATTGTCAATACCA+CGG | + | chr3_1:83181831-83181850 | None:intergenic | 35.0% | |
| ATTCACTCTCACCAAATTTG+AGG | - | chr3_1:83181903-83181922 | Msa0381190:CDS | 35.0% | |
| !! | ACCATCCAAAAGTATCTTCT+TGG | - | chr3_1:83181951-83181970 | Msa0381190:CDS | 35.0% |
| ! | TCCAAGAAGATACTTTTGGA+TGG | + | chr3_1:83181955-83181974 | None:intergenic | 35.0% |
| ! | GTCTTCCAAGAAGATACTTT+TGG | + | chr3_1:83181959-83181978 | None:intergenic | 35.0% |
| ! | ACAATCATTCCCCTTTTGAT+TGG | + | chr3_1:83182031-83182050 | None:intergenic | 35.0% |
| !!! | TGTTCTGTTTGTTGTTTTGG+GGG | - | chr3_1:83182123-83182142 | Msa0381190:CDS | 35.0% |
| CATATTCTACAACAGCAACT+CGG | + | chr3_1:83182246-83182265 | None:intergenic | 35.0% | |
| ! | GCAAATTCTTGTTTGCGTTT+GGG | + | chr3_1:83182276-83182295 | None:intergenic | 35.0% |
| ! | TGCAAATTCTTGTTTGCGTT+TGG | + | chr3_1:83182277-83182296 | None:intergenic | 35.0% |
| GTGAACGAAAATTTCACTTG+GGG | - | chr3_1:83182334-83182353 | Msa0381190:CDS | 35.0% | |
| TGTGTAAAGGCAACAAGAAT+TGG | - | chr3_1:83182357-83182376 | Msa0381190:CDS | 35.0% | |
| CTAGGAATACCAAATAAGCT+TGG | - | chr3_1:83182483-83182502 | Msa0381190:CDS | 35.0% | |
| AGATCATTCCCAAGCTTATT+TGG | + | chr3_1:83182495-83182514 | None:intergenic | 35.0% | |
| ! | GTTCAAACGTTTCTTTTCAG+AGG | + | chr3_1:83182697-83182716 | None:intergenic | 35.0% |
| AAGAAACGTTTGAACTTTCG+TGG | - | chr3_1:83182702-83182721 | Msa0381190:CDS | 35.0% | |
| TGGTTTCTATACTGCGATTA+TGG | - | chr3_1:83182722-83182741 | Msa0381190:CDS | 35.0% | |
| TATACTGCGATTATGGAGAA+AGG | - | chr3_1:83182729-83182748 | Msa0381190:CDS | 35.0% | |
| ATACTGCGATTATGGAGAAA+GGG | - | chr3_1:83182730-83182749 | Msa0381190:CDS | 35.0% | |
| GAGGAACAGTTGATTAACTT+AGG | - | chr3_1:83182876-83182895 | Msa0381190:CDS | 35.0% | |
| CAGTTGATTAACTTAGGAGT+TGG | - | chr3_1:83182882-83182901 | Msa0381190:CDS | 35.0% | |
| GAGACACTTTCTTTGTTAAG+TGG | + | chr3_1:83183050-83183069 | None:intergenic | 35.0% | |
| GGATAAATCAACTTCTGGTA+AGG | - | chr3_1:83181579-83181598 | Msa0381190:CDS | 35.0% | |
| GGTATCAAGATCAACTTCAA+AGG | - | chr3_1:83181651-83181670 | Msa0381190:CDS | 35.0% | |
| !! | AAAGAGGGAAAGTACTAAAG+AGG | - | chr3_1:83181734-83181753 | Msa0381190:CDS | 35.0% |
| !! | AAGAGGGAAAGTACTAAAGA+GGG | - | chr3_1:83181735-83181754 | Msa0381190:CDS | 35.0% |
| ! | TAAAGAGGGAAGGTATAAGA+GGG | - | chr3_1:83181749-83181768 | Msa0381190:CDS | 35.0% |
| !! | GAAGTGTTCTCAGTTGATAA+AGG | - | chr3_1:83181771-83181790 | Msa0381190:CDS | 35.0% |
| !! | TGTTCTCAGTTGATAAAGGA+TGG | - | chr3_1:83181775-83181794 | Msa0381190:CDS | 35.0% |
| !! | GTTGATAAAGGATGGAGTTT+TGG | - | chr3_1:83181783-83181802 | Msa0381190:CDS | 35.0% |
| TGGTAACATTGTCAATACCA+CGG | + | chr3_1:83181831-83181850 | None:intergenic | 35.0% | |
| ATTCACTCTCACCAAATTTG+AGG | - | chr3_1:83181903-83181922 | Msa0381190:CDS | 35.0% | |
| !! | ACCATCCAAAAGTATCTTCT+TGG | - | chr3_1:83181951-83181970 | Msa0381190:CDS | 35.0% |
| ! | TCCAAGAAGATACTTTTGGA+TGG | + | chr3_1:83181955-83181974 | None:intergenic | 35.0% |
| ! | GTCTTCCAAGAAGATACTTT+TGG | + | chr3_1:83181959-83181978 | None:intergenic | 35.0% |
| ! | ACAATCATTCCCCTTTTGAT+TGG | + | chr3_1:83182031-83182050 | None:intergenic | 35.0% |
| !!! | TGTTCTGTTTGTTGTTTTGG+GGG | - | chr3_1:83182123-83182142 | Msa0381190:CDS | 35.0% |
| CATATTCTACAACAGCAACT+CGG | + | chr3_1:83182246-83182265 | None:intergenic | 35.0% | |
| ! | GCAAATTCTTGTTTGCGTTT+GGG | + | chr3_1:83182276-83182295 | None:intergenic | 35.0% |
| ! | TGCAAATTCTTGTTTGCGTT+TGG | + | chr3_1:83182277-83182296 | None:intergenic | 35.0% |
| GTGAACGAAAATTTCACTTG+GGG | - | chr3_1:83182334-83182353 | Msa0381190:CDS | 35.0% | |
| TGTGTAAAGGCAACAAGAAT+TGG | - | chr3_1:83182357-83182376 | Msa0381190:CDS | 35.0% | |
| CTAGGAATACCAAATAAGCT+TGG | - | chr3_1:83182483-83182502 | Msa0381190:CDS | 35.0% | |
| AGATCATTCCCAAGCTTATT+TGG | + | chr3_1:83182495-83182514 | None:intergenic | 35.0% | |
| ! | GTTCAAACGTTTCTTTTCAG+AGG | + | chr3_1:83182697-83182716 | None:intergenic | 35.0% |
| AAGAAACGTTTGAACTTTCG+TGG | - | chr3_1:83182702-83182721 | Msa0381190:CDS | 35.0% | |
| TGGTTTCTATACTGCGATTA+TGG | - | chr3_1:83182722-83182741 | Msa0381190:CDS | 35.0% | |
| TATACTGCGATTATGGAGAA+AGG | - | chr3_1:83182729-83182748 | Msa0381190:CDS | 35.0% | |
| ATACTGCGATTATGGAGAAA+GGG | - | chr3_1:83182730-83182749 | Msa0381190:CDS | 35.0% | |
| GAGGAACAGTTGATTAACTT+AGG | - | chr3_1:83182876-83182895 | Msa0381190:CDS | 35.0% | |
| CAGTTGATTAACTTAGGAGT+TGG | - | chr3_1:83182882-83182901 | Msa0381190:CDS | 35.0% | |
| GAGACACTTTCTTTGTTAAG+TGG | + | chr3_1:83183050-83183069 | None:intergenic | 35.0% | |
| ! | TGTTGTTGTTGTTCCTTCCT+CGG | + | chr3_1:83181494-83181513 | None:intergenic | 40.0% |
| !! | AGGCGATCTTTTGACTGTAA+TGG | + | chr3_1:83181541-83181560 | None:intergenic | 40.0% |
| GGAACGGATAAATCAACTTC+TGG | - | chr3_1:83181574-83181593 | Msa0381190:CDS | 40.0% | |
| !! | GTTTCTAAAGCCTCTAGTTC+CGG | - | chr3_1:83181601-83181620 | Msa0381190:CDS | 40.0% |
| TTTAACAGAACCGGAACTAG+AGG | + | chr3_1:83181614-83181633 | None:intergenic | 40.0% | |
| GTTTCTAATTCAGTGGGTAG+TGG | - | chr3_1:83181709-83181728 | Msa0381190:CDS | 40.0% | |
| ! | CTAAAGAGGGAAGGTATAAG+AGG | - | chr3_1:83181748-83181767 | Msa0381190:CDS | 40.0% |
| !!! | AAGGATGGAGTTTTGGTTTC+TGG | - | chr3_1:83181790-83181809 | Msa0381190:CDS | 40.0% |
| !!! | AGGATGGAGTTTTGGTTTCT+GGG | - | chr3_1:83181791-83181810 | Msa0381190:CDS | 40.0% |
| ! | ACAAGAGATACTCCCTCTTT+TGG | + | chr3_1:83181851-83181870 | None:intergenic | 40.0% |
| ACAAGCATGAGCCTCAAATT+TGG | + | chr3_1:83181917-83181936 | None:intergenic | 40.0% | |
| TCGTTCCACTCTGATTGTTT+AGG | - | chr3_1:83182177-83182196 | Msa0381190:CDS | 40.0% | |
| ATTTCACTTGGGGTGTGTAA+AGG | - | chr3_1:83182344-83182363 | Msa0381190:CDS | 40.0% | |
| !! | TGGTTTTGCCATGAAGTTTG+TGG | - | chr3_1:83182432-83182451 | Msa0381190:CDS | 40.0% |
| ! | GGTTTTGCCATGAAGTTTGT+GGG | - | chr3_1:83182433-83182452 | Msa0381190:CDS | 40.0% |
| ACATGTTCCCACAAACTTCA+TGG | + | chr3_1:83182443-83182462 | None:intergenic | 40.0% | |
| AGCTTGGGAATGATCTAACT+TGG | - | chr3_1:83182499-83182518 | Msa0381190:CDS | 40.0% | |
| ! | TGATGGAGATTTTGCTGATG+AGG | - | chr3_1:83182551-83182570 | Msa0381190:CDS | 40.0% |
| CTGATGAGGAGTTTCATCAA+AGG | - | chr3_1:83182565-83182584 | Msa0381190:CDS | 40.0% | |
| ! | AAGGAAGCGTAAATTGACTG+TGG | - | chr3_1:83182584-83182603 | Msa0381190:CDS | 40.0% |
| TACTGCGATTATGGAGAAAG+GGG | - | chr3_1:83182731-83182750 | Msa0381190:CDS | 40.0% | |
| GTGGCAACCATAAGGATTTA+TGG | - | chr3_1:83182768-83182787 | Msa0381190:CDS | 40.0% | |
| ! | GGTTGCTGAGATTGTTTTCA+TGG | - | chr3_1:83182797-83182816 | Msa0381190:CDS | 40.0% |
| !! | AATGTGCCGTTTGTTGATGA+AGG | - | chr3_1:83182848-83182867 | Msa0381190:CDS | 40.0% |
| !! | ATGTGCCGTTTGTTGATGAA+GGG | - | chr3_1:83182849-83182868 | Msa0381190:CDS | 40.0% |
| ! | TGTTGTTGTTGTTCCTTCCT+CGG | + | chr3_1:83181494-83181513 | None:intergenic | 40.0% |
| !! | AGGCGATCTTTTGACTGTAA+TGG | + | chr3_1:83181541-83181560 | None:intergenic | 40.0% |
| GGAACGGATAAATCAACTTC+TGG | - | chr3_1:83181574-83181593 | Msa0381190:CDS | 40.0% | |
| !! | GTTTCTAAAGCCTCTAGTTC+CGG | - | chr3_1:83181601-83181620 | Msa0381190:CDS | 40.0% |
| TTTAACAGAACCGGAACTAG+AGG | + | chr3_1:83181614-83181633 | None:intergenic | 40.0% | |
| GTTTCTAATTCAGTGGGTAG+TGG | - | chr3_1:83181709-83181728 | Msa0381190:CDS | 40.0% | |
| ! | CTAAAGAGGGAAGGTATAAG+AGG | - | chr3_1:83181748-83181767 | Msa0381190:CDS | 40.0% |
| !!! | AAGGATGGAGTTTTGGTTTC+TGG | - | chr3_1:83181790-83181809 | Msa0381190:CDS | 40.0% |
| !!! | AGGATGGAGTTTTGGTTTCT+GGG | - | chr3_1:83181791-83181810 | Msa0381190:CDS | 40.0% |
| ! | ACAAGAGATACTCCCTCTTT+TGG | + | chr3_1:83181851-83181870 | None:intergenic | 40.0% |
| ACAAGCATGAGCCTCAAATT+TGG | + | chr3_1:83181917-83181936 | None:intergenic | 40.0% | |
| TCGTTCCACTCTGATTGTTT+AGG | - | chr3_1:83182177-83182196 | Msa0381190:CDS | 40.0% | |
| ATTTCACTTGGGGTGTGTAA+AGG | - | chr3_1:83182344-83182363 | Msa0381190:CDS | 40.0% | |
| !! | TGGTTTTGCCATGAAGTTTG+TGG | - | chr3_1:83182432-83182451 | Msa0381190:CDS | 40.0% |
| ! | GGTTTTGCCATGAAGTTTGT+GGG | - | chr3_1:83182433-83182452 | Msa0381190:CDS | 40.0% |
| ACATGTTCCCACAAACTTCA+TGG | + | chr3_1:83182443-83182462 | None:intergenic | 40.0% | |
| AGCTTGGGAATGATCTAACT+TGG | - | chr3_1:83182499-83182518 | Msa0381190:CDS | 40.0% | |
| ! | TGATGGAGATTTTGCTGATG+AGG | - | chr3_1:83182551-83182570 | Msa0381190:CDS | 40.0% |
| CTGATGAGGAGTTTCATCAA+AGG | - | chr3_1:83182565-83182584 | Msa0381190:CDS | 40.0% | |
| ! | AAGGAAGCGTAAATTGACTG+TGG | - | chr3_1:83182584-83182603 | Msa0381190:CDS | 40.0% |
| TACTGCGATTATGGAGAAAG+GGG | - | chr3_1:83182731-83182750 | Msa0381190:CDS | 40.0% | |
| GTGGCAACCATAAGGATTTA+TGG | - | chr3_1:83182768-83182787 | Msa0381190:CDS | 40.0% | |
| ! | GGTTGCTGAGATTGTTTTCA+TGG | - | chr3_1:83182797-83182816 | Msa0381190:CDS | 40.0% |
| !! | AATGTGCCGTTTGTTGATGA+AGG | - | chr3_1:83182848-83182867 | Msa0381190:CDS | 40.0% |
| !! | ATGTGCCGTTTGTTGATGAA+GGG | - | chr3_1:83182849-83182868 | Msa0381190:CDS | 40.0% |
| ! | TCAGTGGGTAGTGGTAAAAG+AGG | - | chr3_1:83181718-83181737 | Msa0381190:CDS | 45.0% |
| ! | CAGTGGGTAGTGGTAAAAGA+GGG | - | chr3_1:83181719-83181738 | Msa0381190:CDS | 45.0% |
| !! | GGGAAAGTACTAAAGAGGGA+AGG | - | chr3_1:83181739-83181758 | Msa0381190:CDS | 45.0% |
| !! | AGAGGGAGTATCTCTTGTGA+AGG | - | chr3_1:83181853-83181872 | Msa0381190:CDS | 45.0% |
| GGAAGACGGAACTTCATTGT+TGG | - | chr3_1:83181972-83181991 | Msa0381190:CDS | 45.0% | |
| CGGAACTTCATTGTTGGACT+TGG | - | chr3_1:83181978-83181997 | Msa0381190:CDS | 45.0% | |
| AGCTCAGAGCTTTCATTCGA+CGG | + | chr3_1:83182005-83182024 | None:intergenic | 45.0% | |
| TCTGAGCTCAGCCAATCAAA+AGG | - | chr3_1:83182017-83182036 | Msa0381190:CDS | 45.0% | |
| CTGAGCTCAGCCAATCAAAA+GGG | - | chr3_1:83182018-83182037 | Msa0381190:CDS | 45.0% | |
| TGAGCTCAGCCAATCAAAAG+GGG | - | chr3_1:83182019-83182038 | Msa0381190:CDS | 45.0% | |
| CAATCAGAGTGGAACGAAGA+AGG | + | chr3_1:83182174-83182193 | None:intergenic | 45.0% | |
| TGGGACCTAAACAATCAGAG+TGG | + | chr3_1:83182185-83182204 | None:intergenic | 45.0% | |
| TTTAGGTCCCAAACGAGATC+CGG | - | chr3_1:83182194-83182213 | Msa0381190:CDS | 45.0% | |
| CGTAAATTGACTGTGGCTCT+TGG | - | chr3_1:83182591-83182610 | Msa0381190:CDS | 45.0% | |
| ACTGCGATTATGGAGAAAGG+GGG | - | chr3_1:83182732-83182751 | Msa0381190:CDS | 45.0% | |
| TGAGTTCTGTGGCAACCATA+AGG | - | chr3_1:83182760-83182779 | Msa0381190:CDS | 45.0% | |
| !! | TGTGCCGTTTGTTGATGAAG+GGG | - | chr3_1:83182850-83182869 | Msa0381190:CDS | 45.0% |
| CAAGCCCCTTCATCAACAAA+CGG | + | chr3_1:83182857-83182876 | None:intergenic | 45.0% | |
| ! | TTTGTTGATGAAGGGGCTTG+AGG | - | chr3_1:83182857-83182876 | Msa0381190:CDS | 45.0% |
| TAACTTAGGAGTTGGGAGCT+TGG | - | chr3_1:83182890-83182909 | Msa0381190:CDS | 45.0% | |
| !!! | CTTGGTTTTGCATTCCTCCA+AGG | - | chr3_1:83182908-83182927 | Msa0381190:CDS | 45.0% |
| AGTGTCTATAGCATCCTTGG+AGG | + | chr3_1:83182925-83182944 | None:intergenic | 45.0% | |
| CCAAGTGTCTATAGCATCCT+TGG | + | chr3_1:83182928-83182947 | None:intergenic | 45.0% | |
| CCAAGGATGCTATAGACACT+TGG | - | chr3_1:83182925-83182944 | Msa0381190:CDS | 45.0% | |
| ! | TCAGTGGGTAGTGGTAAAAG+AGG | - | chr3_1:83181718-83181737 | Msa0381190:CDS | 45.0% |
| ! | CAGTGGGTAGTGGTAAAAGA+GGG | - | chr3_1:83181719-83181738 | Msa0381190:CDS | 45.0% |
| !! | GGGAAAGTACTAAAGAGGGA+AGG | - | chr3_1:83181739-83181758 | Msa0381190:CDS | 45.0% |
| !! | AGAGGGAGTATCTCTTGTGA+AGG | - | chr3_1:83181853-83181872 | Msa0381190:CDS | 45.0% |
| GGAAGACGGAACTTCATTGT+TGG | - | chr3_1:83181972-83181991 | Msa0381190:CDS | 45.0% | |
| CGGAACTTCATTGTTGGACT+TGG | - | chr3_1:83181978-83181997 | Msa0381190:CDS | 45.0% | |
| AGCTCAGAGCTTTCATTCGA+CGG | + | chr3_1:83182005-83182024 | None:intergenic | 45.0% | |
| TCTGAGCTCAGCCAATCAAA+AGG | - | chr3_1:83182017-83182036 | Msa0381190:CDS | 45.0% | |
| CTGAGCTCAGCCAATCAAAA+GGG | - | chr3_1:83182018-83182037 | Msa0381190:CDS | 45.0% | |
| TGAGCTCAGCCAATCAAAAG+GGG | - | chr3_1:83182019-83182038 | Msa0381190:CDS | 45.0% | |
| CAATCAGAGTGGAACGAAGA+AGG | + | chr3_1:83182174-83182193 | None:intergenic | 45.0% | |
| TGGGACCTAAACAATCAGAG+TGG | + | chr3_1:83182185-83182204 | None:intergenic | 45.0% | |
| TTTAGGTCCCAAACGAGATC+CGG | - | chr3_1:83182194-83182213 | Msa0381190:CDS | 45.0% | |
| CGTAAATTGACTGTGGCTCT+TGG | - | chr3_1:83182591-83182610 | Msa0381190:CDS | 45.0% | |
| ACTGCGATTATGGAGAAAGG+GGG | - | chr3_1:83182732-83182751 | Msa0381190:CDS | 45.0% | |
| TGAGTTCTGTGGCAACCATA+AGG | - | chr3_1:83182760-83182779 | Msa0381190:CDS | 45.0% | |
| !! | TGTGCCGTTTGTTGATGAAG+GGG | - | chr3_1:83182850-83182869 | Msa0381190:CDS | 45.0% |
| CAAGCCCCTTCATCAACAAA+CGG | + | chr3_1:83182857-83182876 | None:intergenic | 45.0% | |
| ! | TTTGTTGATGAAGGGGCTTG+AGG | - | chr3_1:83182857-83182876 | Msa0381190:CDS | 45.0% |
| TAACTTAGGAGTTGGGAGCT+TGG | - | chr3_1:83182890-83182909 | Msa0381190:CDS | 45.0% | |
| !!! | CTTGGTTTTGCATTCCTCCA+AGG | - | chr3_1:83182908-83182927 | Msa0381190:CDS | 45.0% |
| AGTGTCTATAGCATCCTTGG+AGG | + | chr3_1:83182925-83182944 | None:intergenic | 45.0% | |
| CCAAGTGTCTATAGCATCCT+TGG | + | chr3_1:83182928-83182947 | None:intergenic | 45.0% | |
| CCAAGGATGCTATAGACACT+TGG | - | chr3_1:83182925-83182944 | Msa0381190:CDS | 45.0% | |
| AAAGCGACAGAGAGAATCCG+AGG | - | chr3_1:83181474-83181493 | Msa0381190:CDS | 50.0% | |
| AGATCGCCTGAGAGAATCTG+AGG | - | chr3_1:83181552-83181571 | Msa0381190:CDS | 50.0% | |
| GATCGCCTGAGAGAATCTGA+GGG | - | chr3_1:83181553-83181572 | Msa0381190:CDS | 50.0% | |
| CCTGAGAGAATCTGAGGGAA+CGG | - | chr3_1:83181558-83181577 | Msa0381190:CDS | 50.0% | |
| ! | GGGACTATTGTTTTCTGCCG+TGG | - | chr3_1:83181811-83181830 | Msa0381190:CDS | 50.0% |
| AGACCATCCGGATCTCGTTT+GGG | + | chr3_1:83182204-83182223 | None:intergenic | 50.0% | |
| CATGTACCATCCAGACCATC+CGG | + | chr3_1:83182216-83182235 | None:intergenic | 50.0% | |
| AGGGGGTAAAGTGAGTTCTG+TGG | - | chr3_1:83182749-83182768 | Msa0381190:CDS | 50.0% | |
| AAAGCGACAGAGAGAATCCG+AGG | - | chr3_1:83181474-83181493 | Msa0381190:CDS | 50.0% | |
| AGATCGCCTGAGAGAATCTG+AGG | - | chr3_1:83181552-83181571 | Msa0381190:CDS | 50.0% | |
| GATCGCCTGAGAGAATCTGA+GGG | - | chr3_1:83181553-83181572 | Msa0381190:CDS | 50.0% | |
| CCTGAGAGAATCTGAGGGAA+CGG | - | chr3_1:83181558-83181577 | Msa0381190:CDS | 50.0% | |
| ! | GGGACTATTGTTTTCTGCCG+TGG | - | chr3_1:83181811-83181830 | Msa0381190:CDS | 50.0% |
| AGACCATCCGGATCTCGTTT+GGG | + | chr3_1:83182204-83182223 | None:intergenic | 50.0% | |
| CATGTACCATCCAGACCATC+CGG | + | chr3_1:83182216-83182235 | None:intergenic | 50.0% | |
| AGGGGGTAAAGTGAGTTCTG+TGG | - | chr3_1:83182749-83182768 | Msa0381190:CDS | 50.0% | |
| CGACAGAGAGAATCCGAGGA+AGG | - | chr3_1:83181478-83181497 | Msa0381190:CDS | 55.0% | |
| CCGTTCCCTCAGATTCTCTC+AGG | + | chr3_1:83181561-83181580 | None:intergenic | 55.0% | |
| CAGACCATCCGGATCTCGTT+TGG | + | chr3_1:83182205-83182224 | None:intergenic | 55.0% | |
| CAAACGAGATCCGGATGGTC+TGG | - | chr3_1:83182203-83182222 | Msa0381190:CDS | 55.0% | |
| CGGATGGTCTGGATGGTACA+TGG | - | chr3_1:83182214-83182233 | Msa0381190:CDS | 55.0% | |
| ! | GGTGTGCTGCGTGAGAGTTT+TGG | - | chr3_1:83182612-83182631 | Msa0381190:CDS | 55.0% |
| CGACAGAGAGAATCCGAGGA+AGG | - | chr3_1:83181478-83181497 | Msa0381190:CDS | 55.0% | |
| CCGTTCCCTCAGATTCTCTC+AGG | + | chr3_1:83181561-83181580 | None:intergenic | 55.0% | |
| CAGACCATCCGGATCTCGTT+TGG | + | chr3_1:83182205-83182224 | None:intergenic | 55.0% | |
| CAAACGAGATCCGGATGGTC+TGG | - | chr3_1:83182203-83182222 | Msa0381190:CDS | 55.0% | |
| CGGATGGTCTGGATGGTACA+TGG | - | chr3_1:83182214-83182233 | Msa0381190:CDS | 55.0% | |
| ! | GGTGTGCTGCGTGAGAGTTT+TGG | - | chr3_1:83182612-83182631 | Msa0381190:CDS | 55.0% |
| GGTCCCAAACGAGATCCGGA+TGG | - | chr3_1:83182198-83182217 | Msa0381190:CDS | 60.0% | |
| CGAGATCCGGATGGTCTGGA+TGG | - | chr3_1:83182207-83182226 | Msa0381190:CDS | 60.0% | |
| GGTCCCAAACGAGATCCGGA+TGG | - | chr3_1:83182198-83182217 | Msa0381190:CDS | 60.0% | |
| CGAGATCCGGATGGTCTGGA+TGG | - | chr3_1:83182207-83182226 | Msa0381190:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 83181445 | 83183079 | 83181445 | ID=Msa0381190;Name=Msa0381190 |
| chr3_1 | mRNA | 83181445 | 83183079 | 83181445 | ID=Msa0381190-mRNA-1;Parent=Msa0381190;Name=Msa0381190-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|-1|0|1|-1|1|1|0|544 |
| chr3_1 | exon | 83181445 | 83183079 | 83181445 | ID=Msa0381190-mRNA-1:exon:21378;Parent=Msa0381190-mRNA-1 |
| chr3_1 | CDS | 83181445 | 83183079 | 83181445 | ID=Msa0381190-mRNA-1:cds;Parent=Msa0381190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
