Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381890 | AES73439.1 | 85.771 | 506 | 41 | 6 | 1 | 487 | 5 | 498 | 0.0 | 856 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381890 | G7J8D2 | 85.771 | 506 | 41 | 6 | 1 | 487 | 5 | 498 | 0.0 | 856 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0381890 | TF | RWP-RK |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381890 | MtrunA17_Chr3g0136081 | 81.973 | 527 | 43 | 6 | 1 | 487 | 5 | 519 | 0.0 | 843 |
| Msa0381890 | MtrunA17_Chr3g0105711 | 51.444 | 554 | 179 | 14 | 1 | 486 | 10 | 541 | 7.08e-160 | 464 |
| Msa0381890 | MtrunA17_Chr5g0406901 | 45.977 | 87 | 42 | 2 | 382 | 465 | 199 | 283 | 4.02e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381890 | AT5G16100.2 | 32.721 | 272 | 128 | 11 | 247 | 471 | 177 | 440 | 6.95e-33 | 130 |
| Msa0381890 | AT5G66990.1 | 27.536 | 138 | 76 | 4 | 345 | 470 | 121 | 246 | 6.37e-11 | 63.5 |
Find 101 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCTTTCTGTGGGGCCATC+TGG | 0.198703 | 3_1:+84241038 | None:intergenic |
| GGCAATACATTGGAATTAAA+TGG | 0.208227 | 3_1:+84242488 | None:intergenic |
| TTCCAACTCCATGAAGATTT+TGG | 0.209996 | 3_1:+84242609 | None:intergenic |
| AATCTTATTCAAAATAATTC+AGG | 0.275363 | 3_1:-84241518 | Msa0381890:intron |
| ACCACAATGTTTAATCATTT+CGG | 0.280881 | 3_1:+84240824 | None:intergenic |
| CACCATCAGATACCTGTTAA+TGG | 0.281140 | 3_1:-84241839 | Msa0381890:CDS |
| TTTGAAAAGCTTGAGATTCA+TGG | 0.294484 | 3_1:-84241890 | Msa0381890:CDS |
| TTGGATTGATGATATTAATA+TGG | 0.313839 | 3_1:-84241543 | Msa0381890:CDS |
| CTTGGTGGTAGTAATAATAA+TGG | 0.330532 | 3_1:-84242518 | Msa0381890:CDS |
| TCAGTCCTTGCCCTTGCCTC+TGG | 0.332263 | 3_1:+84240870 | None:intergenic |
| ACCATCAGATACCTGTTAAT+GGG | 0.352749 | 3_1:-84241838 | Msa0381890:CDS |
| ACTGATGGGGCCCCATTAAC+AGG | 0.356308 | 3_1:+84241827 | None:intergenic |
| GGGGTCCATGCTGAGTTTGT+TGG | 0.358398 | 3_1:+84242633 | None:intergenic |
| TGATCTGCTGCTTCATCAAT+AGG | 0.368145 | 3_1:+84241120 | None:intergenic |
| TACTATGGACTTGGAATACT+TGG | 0.370161 | 3_1:-84242536 | Msa0381890:CDS |
| GGGTCCATGCTGAGTTTGTT+GGG | 0.371034 | 3_1:+84242634 | None:intergenic |
| CAAGAGCAAATGGGTGATAA+TGG | 0.372132 | 3_1:-84241334 | Msa0381890:CDS |
| CCATCCCAAGAAAATTACTA+TGG | 0.379676 | 3_1:-84242551 | Msa0381890:CDS |
| CTCTTTGCACTGGATTGGAT+TGG | 0.394071 | 3_1:-84241562 | Msa0381890:CDS |
| AAAACGGGAATCTGAATTGC+AGG | 0.401372 | 3_1:+84242113 | None:intergenic |
| TCAAATTACTAGCAAATCAA+TGG | 0.407732 | 3_1:-84240905 | Msa0381890:CDS |
| TCTTATGTTTACAGATGAAT+TGG | 0.410262 | 3_1:-84241362 | Msa0381890:intron |
| TCGGTTTGGTTCAACAAAAC+GGG | 0.413527 | 3_1:+84242098 | None:intergenic |
| TTGATTAAGTGCCCGCAGTT+CGG | 0.413996 | 3_1:+84242079 | None:intergenic |
| TTCGGTTTGGTTCAACAAAA+CGG | 0.419751 | 3_1:+84242097 | None:intergenic |
| GATTCTAAATTGTAAGCAAA+TGG | 0.423137 | 3_1:+84242437 | None:intergenic |
| GTAATTTGATCTGCTTCAAA+AGG | 0.424097 | 3_1:+84240919 | None:intergenic |
| TGAGACTCTTTGCACTGGAT+TGG | 0.424222 | 3_1:-84241567 | Msa0381890:CDS |
| CAAGAAAATTACTATGGACT+TGG | 0.426462 | 3_1:-84242545 | Msa0381890:CDS |
| ACCTTTCTGTGGGGCCATCT+GGG | 0.433450 | 3_1:+84241039 | None:intergenic |
| GGACCCCACCAAAATCTTCA+TGG | 0.435855 | 3_1:-84242617 | Msa0381890:CDS |
| ATGAACTACCATCCACTTCA+AGG | 0.439320 | 3_1:+84242168 | None:intergenic |
| CCATGATATTCAACAAGGTC+AGG | 0.445114 | 3_1:-84242354 | Msa0381890:CDS |
| GAGGCAAGGGCAAGGACTGA+AGG | 0.455362 | 3_1:-84240867 | Msa0381890:CDS |
| TCATATTGATCTTGAACCAT+TGG | 0.458294 | 3_1:+84242227 | None:intergenic |
| AAGAAAACTTGTCGTAAAGC+AGG | 0.469657 | 3_1:-84241066 | Msa0381890:CDS |
| CCTGACCTTGTTGAATATCA+TGG | 0.476020 | 3_1:+84242354 | None:intergenic |
| CACCAAAATCTTCATGGAGT+TGG | 0.477847 | 3_1:-84242611 | Msa0381890:CDS |
| TTATTCATATTGAAGAAACT+TGG | 0.478548 | 3_1:+84242719 | None:intergenic |
| TAAGTGCCCGCAGTTCGGTT+TGG | 0.482116 | 3_1:+84242084 | None:intergenic |
| ACTTGTTCTGAGAGGTTCCT+AGG | 0.487950 | 3_1:+84241307 | None:intergenic |
| AGCAAATCAATGGGAAGGAC+AGG | 0.491125 | 3_1:-84240895 | Msa0381890:CDS |
| ATTGGTGGAGCAAGAGCAAA+TGG | 0.500485 | 3_1:-84241344 | Msa0381890:CDS |
| CAAATTACTAGCAAATCAAT+GGG | 0.500638 | 3_1:-84240904 | Msa0381890:CDS |
| AGGCAAGGGCAAGGACTGAA+GGG | 0.501249 | 3_1:-84240866 | Msa0381890:CDS |
| TATCGCTGCTGCGGCTAAAG+TGG | 0.502806 | 3_1:+84240759 | None:intergenic |
| ATGGATAAATCTGCTAGTGT+TGG | 0.502811 | 3_1:+84242695 | None:intergenic |
| TGGATAAATCTGCTAGTGTT+GGG | 0.507739 | 3_1:+84242696 | None:intergenic |
| TATGTTTACAGATGAATTGG+TGG | 0.515772 | 3_1:-84241359 | Msa0381890:intron |
| AACTGCGGGCACTTAATCAA+TGG | 0.515958 | 3_1:-84242076 | Msa0381890:CDS |
| TATTCATATTGAAGAAACTT+GGG | 0.521262 | 3_1:+84242720 | None:intergenic |
| TCAATCATTTGATAAACTGA+TGG | 0.522363 | 3_1:+84241812 | None:intergenic |
| AAGGACAGGATCCAGAGGCA+AGG | 0.525000 | 3_1:-84240881 | Msa0381890:CDS |
| GTCTCATAAAATTCAGACAT+TGG | 0.526543 | 3_1:+84241584 | None:intergenic |
| CAATCATTTGATAAACTGAT+GGG | 0.528489 | 3_1:+84241813 | None:intergenic |
| TTACCACTCTGATTCTGTTG+TGG | 0.528506 | 3_1:+84242467 | None:intergenic |
| AGGACAGGATCCAGAGGCAA+GGG | 0.531756 | 3_1:-84240880 | Msa0381890:CDS |
| GCTTGAGATTCATGGAAGGT+TGG | 0.532570 | 3_1:-84241882 | Msa0381890:CDS |
| ATTGAAGAAACTTGGGTCAA+CGG | 0.535851 | 3_1:+84242727 | None:intergenic |
| TGGAATAAATAGCCTTGAAG+TGG | 0.539422 | 3_1:-84242180 | Msa0381890:CDS |
| GTTGAACCAAACCGAACTGC+GGG | 0.542214 | 3_1:-84242090 | Msa0381890:CDS |
| TATGGACTTGGAATACTTGG+TGG | 0.542573 | 3_1:-84242533 | Msa0381890:CDS |
| CTGCGGCTAAAGTGGCAAGA+AGG | 0.552292 | 3_1:+84240767 | None:intergenic |
| ACCCAGATGGCCCCACAGAA+AGG | 0.563782 | 3_1:-84241040 | Msa0381890:intron |
| CCCCATTAACAGGTATCTGA+TGG | 0.567348 | 3_1:+84241837 | None:intergenic |
| GTAAAGCAGGGTTACCCAGA+TGG | 0.568095 | 3_1:-84241053 | Msa0381890:CDS |
| TGTGTGGAACGTCATTTAGC+AGG | 0.571153 | 3_1:-84241626 | Msa0381890:CDS |
| AGTTTGTTGGGACAGTGCAG+TGG | 0.571941 | 3_1:+84242646 | None:intergenic |
| GTCCATGTTGTTGTACATCA+TGG | 0.572620 | 3_1:+84242285 | None:intergenic |
| AGAAAACTTGTCGTAAAGCA+GGG | 0.586540 | 3_1:-84241065 | Msa0381890:CDS |
| CGGCTAAAGTGGCAAGAAGG+CGG | 0.587716 | 3_1:+84240770 | None:intergenic |
| ATTCTGTTGTGGCAATACAT+TGG | 0.591773 | 3_1:+84242478 | None:intergenic |
| CACCATGATGTACAACAACA+TGG | 0.591982 | 3_1:-84242287 | Msa0381890:CDS |
| GATATTCAACAAGGTCAGGA+TGG | 0.598749 | 3_1:-84242350 | Msa0381890:CDS |
| AGGATCCAGAGGCAAGGGCA+AGG | 0.602162 | 3_1:-84240875 | Msa0381890:CDS |
| ATAAATAGCCTTGAAGTGGA+TGG | 0.603975 | 3_1:-84242176 | Msa0381890:CDS |
| GAAATGATTAAACATTGTGG+TGG | 0.607415 | 3_1:-84240822 | Msa0381890:CDS |
| TGAATATCATGGTAAATGAA+CGG | 0.610177 | 3_1:+84242365 | None:intergenic |
| ACCGAAATGATTAAACATTG+TGG | 0.612061 | 3_1:-84240825 | Msa0381890:CDS |
| CCATCAGATACCTGTTAATG+GGG | 0.617286 | 3_1:-84241837 | Msa0381890:CDS |
| AAAAGCTTGAGATTCATGGA+AGG | 0.617730 | 3_1:-84241886 | Msa0381890:CDS |
| GGCAAGGGCAAGGACTGAAG+GGG | 0.618518 | 3_1:-84240865 | Msa0381890:CDS |
| TTACTAGCAAATCAATGGGA+AGG | 0.619972 | 3_1:-84240900 | Msa0381890:CDS |
| CTGTCCCAACAAACTCAGCA+TGG | 0.622021 | 3_1:-84242638 | Msa0381890:CDS |
| GTTTGTTGGGACAGTGCAGT+GGG | 0.622118 | 3_1:+84242647 | None:intergenic |
| TGTTGAACCAAACCGAACTG+CGG | 0.627319 | 3_1:-84242091 | Msa0381890:CDS |
| CAACAACATGGACATGGACA+TGG | 0.630152 | 3_1:-84242275 | Msa0381890:CDS |
| CATCATATTCAACAACTGCA+TGG | 0.630346 | 3_1:-84242401 | Msa0381890:CDS |
| AGAGAAATCATACACACTGA+TGG | 0.630751 | 3_1:-84242008 | Msa0381890:intron |
| AAATACGGGGTTACTGTGGG+TGG | 0.632071 | 3_1:+84242053 | None:intergenic |
| GCGATGTCATACAACGCGGT+TGG | 0.634750 | 3_1:+84240792 | None:intergenic |
| ATTTACCATGATATTCAACA+AGG | 0.642604 | 3_1:-84242359 | Msa0381890:CDS |
| ATATTATTACTTGTTCTGAG+AGG | 0.643167 | 3_1:+84241299 | None:intergenic |
| GATGTACAACAACATGGACA+TGG | 0.659086 | 3_1:-84242281 | Msa0381890:CDS |
| ATGGGAAGGACAGGATCCAG+AGG | 0.682760 | 3_1:-84240886 | Msa0381890:CDS |
| AATCATTTGATAAACTGATG+GGG | 0.687280 | 3_1:+84241814 | None:intergenic |
| TTGGTGGAGCAAGAGCAAAT+GGG | 0.694143 | 3_1:-84241343 | Msa0381890:CDS |
| TGGGTGATAATGGAACGCCT+AGG | 0.709329 | 3_1:-84241324 | Msa0381890:CDS |
| CATATTCAACAACTGCATGG+TGG | 0.712817 | 3_1:-84242398 | Msa0381890:CDS |
| TTGCCACAACAGAATCAGAG+TGG | 0.727563 | 3_1:-84242470 | Msa0381890:CDS |
| GGCGGCGATGTCATACAACG+CGG | 0.812023 | 3_1:+84240788 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACAATAATAATTTTTCATT+TGG | - | chr3_1:84241340-84241359 | Msa0381890:CDS | 10.0% |
| !!! | AACAATAATAATTTTTCATT+TGG | - | chr3_1:84241340-84241359 | Msa0381890:CDS | 10.0% |
| !!! | ATTGTTGTTATTTTTATCAA+TGG | + | chr3_1:84240867-84240886 | None:intergenic | 15.0% |
| !! | TATCAAAATAATAGAAACAT+GGG | + | chr3_1:84241594-84241613 | None:intergenic | 15.0% |
| !! | ATATCAAAATAATAGAAACA+TGG | + | chr3_1:84241595-84241614 | None:intergenic | 15.0% |
| !! | AATCTTATTCAAAATAATTC+AGG | - | chr3_1:84242022-84242041 | Msa0381890:CDS | 15.0% |
| !!! | ATTGTTGTTATTTTTATCAA+TGG | + | chr3_1:84240867-84240886 | None:intergenic | 15.0% |
| !! | TATCAAAATAATAGAAACAT+GGG | + | chr3_1:84241594-84241613 | None:intergenic | 15.0% |
| !! | ATATCAAAATAATAGAAACA+TGG | + | chr3_1:84241595-84241614 | None:intergenic | 15.0% |
| !! | AATCTTATTCAAAATAATTC+AGG | - | chr3_1:84242022-84242041 | Msa0381890:CDS | 15.0% |
| !! | TATTCATATTGAAGAAACTT+GGG | + | chr3_1:84240823-84240842 | None:intergenic | 20.0% |
| !! | TTATTCATATTGAAGAAACT+TGG | + | chr3_1:84240824-84240843 | None:intergenic | 20.0% |
| !! | TGATAAAAATAACAACAATG+TGG | - | chr3_1:84240868-84240887 | Msa0381890:CDS | 20.0% |
| !! | GATAAAAATAACAACAATGT+GGG | - | chr3_1:84240869-84240888 | Msa0381890:CDS | 20.0% |
| !!! | TGGTAATATTGATTCATTTT+CGG | - | chr3_1:84241210-84241229 | Msa0381890:intron | 20.0% |
| !!! | AAAAATTCTTTATTTCACCA+AGG | + | chr3_1:84241883-84241902 | None:intergenic | 20.0% |
| !!! | TGGTGAAATAAAGAATTTTT+TGG | - | chr3_1:84241883-84241902 | Msa0381890:CDS | 20.0% |
| !!! | TTGGATTGATGATATTAATA+TGG | - | chr3_1:84241997-84242016 | Msa0381890:intron | 20.0% |
| !! | TATTCATATTGAAGAAACTT+GGG | + | chr3_1:84240823-84240842 | None:intergenic | 20.0% |
| !! | TTATTCATATTGAAGAAACT+TGG | + | chr3_1:84240824-84240843 | None:intergenic | 20.0% |
| !! | TGATAAAAATAACAACAATG+TGG | - | chr3_1:84240868-84240887 | Msa0381890:CDS | 20.0% |
| !! | GATAAAAATAACAACAATGT+GGG | - | chr3_1:84240869-84240888 | Msa0381890:CDS | 20.0% |
| !!! | TGGTAATATTGATTCATTTT+CGG | - | chr3_1:84241210-84241229 | Msa0381890:intron | 20.0% |
| !!! | AAAAATTCTTTATTTCACCA+AGG | + | chr3_1:84241883-84241902 | None:intergenic | 20.0% |
| !!! | TGGTGAAATAAAGAATTTTT+TGG | - | chr3_1:84241883-84241902 | Msa0381890:CDS | 20.0% |
| !!! | TTGGATTGATGATATTAATA+TGG | - | chr3_1:84241997-84242016 | Msa0381890:intron | 20.0% |
| !! | AAGTCCATAGTAATTTTCTT+GGG | + | chr3_1:84240996-84241015 | None:intergenic | 25.0% |
| ! | GATTCTAAATTGTAAGCAAA+TGG | + | chr3_1:84241106-84241125 | None:intergenic | 25.0% |
| !! | TGAATATGATGATCATTTTC+TGG | + | chr3_1:84241130-84241149 | None:intergenic | 25.0% |
| ! | TGAATATCATGGTAAATGAA+CGG | + | chr3_1:84241178-84241197 | None:intergenic | 25.0% |
| ! | ATTTACCATGATATTCAACA+AGG | - | chr3_1:84241181-84241200 | Msa0381890:intron | 25.0% |
| ! | AATCATTTGATAAACTGATG+GGG | + | chr3_1:84241729-84241748 | None:intergenic | 25.0% |
| ! | CAATCATTTGATAAACTGAT+GGG | + | chr3_1:84241730-84241749 | None:intergenic | 25.0% |
| ! | TCAATCATTTGATAAACTGA+TGG | + | chr3_1:84241731-84241750 | None:intergenic | 25.0% |
| !! | AACTTTTGTAACAGTTTTTG+TGG | - | chr3_1:84241851-84241870 | Msa0381890:CDS | 25.0% |
| !! | ACTTTTGTAACAGTTTTTGT+GGG | - | chr3_1:84241852-84241871 | Msa0381890:CDS | 25.0% |
| ! | TCTTATGTTTACAGATGAAT+TGG | - | chr3_1:84242178-84242197 | Msa0381890:CDS | 25.0% |
| !! | ATATTATTACTTGTTCTGAG+AGG | + | chr3_1:84242244-84242263 | None:intergenic | 25.0% |
| ! | TCTTGTGTGTTATACTTATT+TGG | - | chr3_1:84242533-84242552 | Msa0381890:CDS | 25.0% |
| ! | AGACACATTATATTAGCAAA+AGG | + | chr3_1:84242578-84242597 | None:intergenic | 25.0% |
| ! | TCAAATTACTAGCAAATCAA+TGG | - | chr3_1:84242635-84242654 | Msa0381890:CDS | 25.0% |
| ! | CAAATTACTAGCAAATCAAT+GGG | - | chr3_1:84242636-84242655 | Msa0381890:CDS | 25.0% |
| ! | ACCACAATGTTTAATCATTT+CGG | + | chr3_1:84242719-84242738 | None:intergenic | 25.0% |
| !! | AAGTCCATAGTAATTTTCTT+GGG | + | chr3_1:84240996-84241015 | None:intergenic | 25.0% |
| ! | GATTCTAAATTGTAAGCAAA+TGG | + | chr3_1:84241106-84241125 | None:intergenic | 25.0% |
| !! | TGAATATGATGATCATTTTC+TGG | + | chr3_1:84241130-84241149 | None:intergenic | 25.0% |
| ! | TGAATATCATGGTAAATGAA+CGG | + | chr3_1:84241178-84241197 | None:intergenic | 25.0% |
| ! | ATTTACCATGATATTCAACA+AGG | - | chr3_1:84241181-84241200 | Msa0381890:intron | 25.0% |
| ! | AATCATTTGATAAACTGATG+GGG | + | chr3_1:84241729-84241748 | None:intergenic | 25.0% |
| ! | CAATCATTTGATAAACTGAT+GGG | + | chr3_1:84241730-84241749 | None:intergenic | 25.0% |
| ! | TCAATCATTTGATAAACTGA+TGG | + | chr3_1:84241731-84241750 | None:intergenic | 25.0% |
| !! | AACTTTTGTAACAGTTTTTG+TGG | - | chr3_1:84241851-84241870 | Msa0381890:CDS | 25.0% |
| !! | ACTTTTGTAACAGTTTTTGT+GGG | - | chr3_1:84241852-84241871 | Msa0381890:CDS | 25.0% |
| ! | TCTTATGTTTACAGATGAAT+TGG | - | chr3_1:84242178-84242197 | Msa0381890:CDS | 25.0% |
| !! | ATATTATTACTTGTTCTGAG+AGG | + | chr3_1:84242244-84242263 | None:intergenic | 25.0% |
| ! | TCTTGTGTGTTATACTTATT+TGG | - | chr3_1:84242533-84242552 | Msa0381890:CDS | 25.0% |
| ! | AGACACATTATATTAGCAAA+AGG | + | chr3_1:84242578-84242597 | None:intergenic | 25.0% |
| ! | TCAAATTACTAGCAAATCAA+TGG | - | chr3_1:84242635-84242654 | Msa0381890:CDS | 25.0% |
| ! | CAAATTACTAGCAAATCAAT+GGG | - | chr3_1:84242636-84242655 | Msa0381890:CDS | 25.0% |
| ! | ACCACAATGTTTAATCATTT+CGG | + | chr3_1:84242719-84242738 | None:intergenic | 25.0% |
| ! | CAAGTCCATAGTAATTTTCT+TGG | + | chr3_1:84240997-84241016 | None:intergenic | 30.0% |
| CAAGAAAATTACTATGGACT+TGG | - | chr3_1:84240995-84241014 | Msa0381890:intron | 30.0% | |
| ! | CTTGGTGGTAGTAATAATAA+TGG | - | chr3_1:84241022-84241041 | Msa0381890:intron | 30.0% |
| GGCAATACATTGGAATTAAA+TGG | + | chr3_1:84241055-84241074 | None:intergenic | 30.0% | |
| ! | TGAAACATTTTCTGTTCCAA+TGG | - | chr3_1:84241297-84241316 | Msa0381890:intron | 30.0% |
| TCATATTGATCTTGAACCAT+TGG | + | chr3_1:84241316-84241335 | None:intergenic | 30.0% | |
| TGACAACAACTGCAAAAATA+CGG | + | chr3_1:84241505-84241524 | None:intergenic | 30.0% | |
| TTTGAAAAGCTTGAGATTCA+TGG | - | chr3_1:84241650-84241669 | Msa0381890:CDS | 30.0% | |
| TGTAGTACTATACTAAGACT+TGG | + | chr3_1:84241761-84241780 | None:intergenic | 30.0% | |
| GTCTCATAAAATTCAGACAT+TGG | + | chr3_1:84241959-84241978 | None:intergenic | 30.0% | |
| ! | AAAATAATTCAGGTTTGTCC+TGG | - | chr3_1:84242032-84242051 | Msa0381890:CDS | 30.0% |
| ! | TCTTTTCATTCATGTGACAT+TGG | - | chr3_1:84242139-84242158 | Msa0381890:CDS | 30.0% |
| ! | CTTTTCATTCATGTGACATT+GGG | - | chr3_1:84242140-84242159 | Msa0381890:CDS | 30.0% |
| TATGTTTACAGATGAATTGG+TGG | - | chr3_1:84242181-84242200 | Msa0381890:CDS | 30.0% | |
| TTCCTCTGTTCAATACAATA+GGG | + | chr3_1:84242351-84242370 | None:intergenic | 30.0% | |
| TTTCCTCTGTTCAATACAAT+AGG | + | chr3_1:84242352-84242371 | None:intergenic | 30.0% | |
| ! | AAAGACTTTTACCTTTCTGT+GGG | + | chr3_1:84242514-84242533 | None:intergenic | 30.0% |
| TGTGTCTTAAAATTAACGAC+AGG | - | chr3_1:84242591-84242610 | Msa0381890:CDS | 30.0% | |
| GTAATTTGATCTGCTTCAAA+AGG | + | chr3_1:84242624-84242643 | None:intergenic | 30.0% | |
| ACCGAAATGATTAAACATTG+TGG | - | chr3_1:84242715-84242734 | Msa0381890:CDS | 30.0% | |
| GAAATGATTAAACATTGTGG+TGG | - | chr3_1:84242718-84242737 | Msa0381890:CDS | 30.0% | |
| ! | CAAGTCCATAGTAATTTTCT+TGG | + | chr3_1:84240997-84241016 | None:intergenic | 30.0% |
| CAAGAAAATTACTATGGACT+TGG | - | chr3_1:84240995-84241014 | Msa0381890:intron | 30.0% | |
| ! | CTTGGTGGTAGTAATAATAA+TGG | - | chr3_1:84241022-84241041 | Msa0381890:intron | 30.0% |
| GGCAATACATTGGAATTAAA+TGG | + | chr3_1:84241055-84241074 | None:intergenic | 30.0% | |
| ! | TGAAACATTTTCTGTTCCAA+TGG | - | chr3_1:84241297-84241316 | Msa0381890:intron | 30.0% |
| TCATATTGATCTTGAACCAT+TGG | + | chr3_1:84241316-84241335 | None:intergenic | 30.0% | |
| TGACAACAACTGCAAAAATA+CGG | + | chr3_1:84241505-84241524 | None:intergenic | 30.0% | |
| TTTGAAAAGCTTGAGATTCA+TGG | - | chr3_1:84241650-84241669 | Msa0381890:CDS | 30.0% | |
| TGTAGTACTATACTAAGACT+TGG | + | chr3_1:84241761-84241780 | None:intergenic | 30.0% | |
| GTCTCATAAAATTCAGACAT+TGG | + | chr3_1:84241959-84241978 | None:intergenic | 30.0% | |
| ! | AAAATAATTCAGGTTTGTCC+TGG | - | chr3_1:84242032-84242051 | Msa0381890:CDS | 30.0% |
| ! | TCTTTTCATTCATGTGACAT+TGG | - | chr3_1:84242139-84242158 | Msa0381890:CDS | 30.0% |
| ! | CTTTTCATTCATGTGACATT+GGG | - | chr3_1:84242140-84242159 | Msa0381890:CDS | 30.0% |
| TATGTTTACAGATGAATTGG+TGG | - | chr3_1:84242181-84242200 | Msa0381890:CDS | 30.0% | |
| TTCCTCTGTTCAATACAATA+GGG | + | chr3_1:84242351-84242370 | None:intergenic | 30.0% | |
| TTTCCTCTGTTCAATACAAT+AGG | + | chr3_1:84242352-84242371 | None:intergenic | 30.0% | |
| ! | AAAGACTTTTACCTTTCTGT+GGG | + | chr3_1:84242514-84242533 | None:intergenic | 30.0% |
| TGTGTCTTAAAATTAACGAC+AGG | - | chr3_1:84242591-84242610 | Msa0381890:CDS | 30.0% | |
| GTAATTTGATCTGCTTCAAA+AGG | + | chr3_1:84242624-84242643 | None:intergenic | 30.0% | |
| ACCGAAATGATTAAACATTG+TGG | - | chr3_1:84242715-84242734 | Msa0381890:CDS | 30.0% | |
| GAAATGATTAAACATTGTGG+TGG | - | chr3_1:84242718-84242737 | Msa0381890:CDS | 30.0% | |
| ATTGAAGAAACTTGGGTCAA+CGG | + | chr3_1:84240816-84240835 | None:intergenic | 35.0% | |
| TGGATAAATCTGCTAGTGTT+GGG | + | chr3_1:84240847-84240866 | None:intergenic | 35.0% | |
| ATGGATAAATCTGCTAGTGT+TGG | + | chr3_1:84240848-84240867 | None:intergenic | 35.0% | |
| !! | AACTCCATGAAGATTTTGGT+GGG | + | chr3_1:84240930-84240949 | None:intergenic | 35.0% |
| ! | TTCCAACTCCATGAAGATTT+TGG | + | chr3_1:84240934-84240953 | None:intergenic | 35.0% |
| ! | TAGTAATTTTCTTGGGATGG+TGG | + | chr3_1:84240989-84241008 | None:intergenic | 35.0% |
| ! | CCATAGTAATTTTCTTGGGA+TGG | + | chr3_1:84240992-84241011 | None:intergenic | 35.0% |
| CCATCCCAAGAAAATTACTA+TGG | - | chr3_1:84240989-84241008 | Msa0381890:intron | 35.0% | |
| TACTATGGACTTGGAATACT+TGG | - | chr3_1:84241004-84241023 | Msa0381890:intron | 35.0% | |
| ATTCTGTTGTGGCAATACAT+TGG | + | chr3_1:84241065-84241084 | None:intergenic | 35.0% | |
| CATCATATTCAACAACTGCA+TGG | - | chr3_1:84241139-84241158 | Msa0381890:CDS | 35.0% | |
| ! | TGGAATAAATAGCCTTGAAG+TGG | - | chr3_1:84241360-84241379 | Msa0381890:intron | 35.0% |
| ! | ATAAATAGCCTTGAAGTGGA+TGG | - | chr3_1:84241364-84241383 | Msa0381890:intron | 35.0% |
| !! | TTCGGTTTGGTTCAACAAAA+CGG | + | chr3_1:84241446-84241465 | None:intergenic | 35.0% |
| ACAACAACTGCAAAAATACG+GGG | + | chr3_1:84241503-84241522 | None:intergenic | 35.0% | |
| GACAACAACTGCAAAAATAC+GGG | + | chr3_1:84241504-84241523 | None:intergenic | 35.0% | |
| AGAGAAATCATACACACTGA+TGG | - | chr3_1:84241532-84241551 | Msa0381890:CDS | 35.0% | |
| AAAAGCTTGAGATTCATGGA+AGG | - | chr3_1:84241654-84241673 | Msa0381890:CDS | 35.0% | |
| ACCATCAGATACCTGTTAAT+GGG | - | chr3_1:84241702-84241721 | Msa0381890:intron | 35.0% | |
| ! | TTTTATGAGACTCTTTGCAC+TGG | - | chr3_1:84241968-84241987 | Msa0381890:intron | 35.0% |
| TACCCTATTGTATTGAACAG+AGG | - | chr3_1:84242346-84242365 | Msa0381890:CDS | 35.0% | |
| ! | CAAGTTTTCTTGAGAACTGT+TGG | + | chr3_1:84242465-84242484 | None:intergenic | 35.0% |
| AAGAAAACTTGTCGTAAAGC+AGG | - | chr3_1:84242474-84242493 | Msa0381890:CDS | 35.0% | |
| AGAAAACTTGTCGTAAAGCA+GGG | - | chr3_1:84242475-84242494 | Msa0381890:CDS | 35.0% | |
| ! | AAGACTTTTACCTTTCTGTG+GGG | + | chr3_1:84242513-84242532 | None:intergenic | 35.0% |
| ! | GAAAGACTTTTACCTTTCTG+TGG | + | chr3_1:84242515-84242534 | None:intergenic | 35.0% |
| TTACTAGCAAATCAATGGGA+AGG | - | chr3_1:84242640-84242659 | Msa0381890:CDS | 35.0% | |
| ATTGAAGAAACTTGGGTCAA+CGG | + | chr3_1:84240816-84240835 | None:intergenic | 35.0% | |
| TGGATAAATCTGCTAGTGTT+GGG | + | chr3_1:84240847-84240866 | None:intergenic | 35.0% | |
| ATGGATAAATCTGCTAGTGT+TGG | + | chr3_1:84240848-84240867 | None:intergenic | 35.0% | |
| !! | AACTCCATGAAGATTTTGGT+GGG | + | chr3_1:84240930-84240949 | None:intergenic | 35.0% |
| ! | TTCCAACTCCATGAAGATTT+TGG | + | chr3_1:84240934-84240953 | None:intergenic | 35.0% |
| ! | TAGTAATTTTCTTGGGATGG+TGG | + | chr3_1:84240989-84241008 | None:intergenic | 35.0% |
| ! | CCATAGTAATTTTCTTGGGA+TGG | + | chr3_1:84240992-84241011 | None:intergenic | 35.0% |
| CCATCCCAAGAAAATTACTA+TGG | - | chr3_1:84240989-84241008 | Msa0381890:intron | 35.0% | |
| TACTATGGACTTGGAATACT+TGG | - | chr3_1:84241004-84241023 | Msa0381890:intron | 35.0% | |
| ATTCTGTTGTGGCAATACAT+TGG | + | chr3_1:84241065-84241084 | None:intergenic | 35.0% | |
| CATCATATTCAACAACTGCA+TGG | - | chr3_1:84241139-84241158 | Msa0381890:CDS | 35.0% | |
| ! | TGGAATAAATAGCCTTGAAG+TGG | - | chr3_1:84241360-84241379 | Msa0381890:intron | 35.0% |
| ! | ATAAATAGCCTTGAAGTGGA+TGG | - | chr3_1:84241364-84241383 | Msa0381890:intron | 35.0% |
| !! | TTCGGTTTGGTTCAACAAAA+CGG | + | chr3_1:84241446-84241465 | None:intergenic | 35.0% |
| ACAACAACTGCAAAAATACG+GGG | + | chr3_1:84241503-84241522 | None:intergenic | 35.0% | |
| GACAACAACTGCAAAAATAC+GGG | + | chr3_1:84241504-84241523 | None:intergenic | 35.0% | |
| AGAGAAATCATACACACTGA+TGG | - | chr3_1:84241532-84241551 | Msa0381890:CDS | 35.0% | |
| AAAAGCTTGAGATTCATGGA+AGG | - | chr3_1:84241654-84241673 | Msa0381890:CDS | 35.0% | |
| ACCATCAGATACCTGTTAAT+GGG | - | chr3_1:84241702-84241721 | Msa0381890:intron | 35.0% | |
| ! | TTTTATGAGACTCTTTGCAC+TGG | - | chr3_1:84241968-84241987 | Msa0381890:intron | 35.0% |
| TACCCTATTGTATTGAACAG+AGG | - | chr3_1:84242346-84242365 | Msa0381890:CDS | 35.0% | |
| ! | CAAGTTTTCTTGAGAACTGT+TGG | + | chr3_1:84242465-84242484 | None:intergenic | 35.0% |
| AAGAAAACTTGTCGTAAAGC+AGG | - | chr3_1:84242474-84242493 | Msa0381890:CDS | 35.0% | |
| AGAAAACTTGTCGTAAAGCA+GGG | - | chr3_1:84242475-84242494 | Msa0381890:CDS | 35.0% | |
| ! | AAGACTTTTACCTTTCTGTG+GGG | + | chr3_1:84242513-84242532 | None:intergenic | 35.0% |
| ! | GAAAGACTTTTACCTTTCTG+TGG | + | chr3_1:84242515-84242534 | None:intergenic | 35.0% |
| TTACTAGCAAATCAATGGGA+AGG | - | chr3_1:84242640-84242659 | Msa0381890:CDS | 35.0% | |
| !! | ACTCCATGAAGATTTTGGTG+GGG | + | chr3_1:84240929-84240948 | None:intergenic | 40.0% |
| ! | CAACTCCATGAAGATTTTGG+TGG | + | chr3_1:84240931-84240950 | None:intergenic | 40.0% |
| CACCAAAATCTTCATGGAGT+TGG | - | chr3_1:84240929-84240948 | Msa0381890:CDS | 40.0% | |
| TATGGACTTGGAATACTTGG+TGG | - | chr3_1:84241007-84241026 | Msa0381890:intron | 40.0% | |
| TTACCACTCTGATTCTGTTG+TGG | + | chr3_1:84241076-84241095 | None:intergenic | 40.0% | |
| CATATTCAACAACTGCATGG+TGG | - | chr3_1:84241142-84241161 | Msa0381890:CDS | 40.0% | |
| CCTGACCTTGTTGAATATCA+TGG | + | chr3_1:84241189-84241208 | None:intergenic | 40.0% | |
| CCATGATATTCAACAAGGTC+AGG | - | chr3_1:84241186-84241205 | Msa0381890:intron | 40.0% | |
| GATATTCAACAAGGTCAGGA+TGG | - | chr3_1:84241190-84241209 | Msa0381890:intron | 40.0% | |
| CACCATGATGTACAACAACA+TGG | - | chr3_1:84241253-84241272 | Msa0381890:intron | 40.0% | |
| GTCCATGTTGTTGTACATCA+TGG | + | chr3_1:84241258-84241277 | None:intergenic | 40.0% | |
| GATGTACAACAACATGGACA+TGG | - | chr3_1:84241259-84241278 | Msa0381890:intron | 40.0% | |
| ATGAACTACCATCCACTTCA+AGG | + | chr3_1:84241375-84241394 | None:intergenic | 40.0% | |
| AAAACGGGAATCTGAATTGC+AGG | + | chr3_1:84241430-84241449 | None:intergenic | 40.0% | |
| !! | TCGGTTTGGTTCAACAAAAC+GGG | + | chr3_1:84241445-84241464 | None:intergenic | 40.0% |
| CAAAAATACGGGGTTACTGT+GGG | + | chr3_1:84241493-84241512 | None:intergenic | 40.0% | |
| CACCATCAGATACCTGTTAA+TGG | - | chr3_1:84241701-84241720 | Msa0381890:intron | 40.0% | |
| CCATCAGATACCTGTTAATG+GGG | - | chr3_1:84241703-84241722 | Msa0381890:intron | 40.0% | |
| ! | AGTTTTTGTGGGAAAAGCCT+TGG | - | chr3_1:84241863-84241882 | Msa0381890:CDS | 40.0% |
| !!! | TTTTTTGGCACAGTACTGTG+TGG | - | chr3_1:84241898-84241917 | Msa0381890:CDS | 40.0% |
| GACATTGGGTTAAGTTTGAG+TGG | - | chr3_1:84242154-84242173 | Msa0381890:CDS | 40.0% | |
| CAAGAGCAAATGGGTGATAA+TGG | - | chr3_1:84242206-84242225 | Msa0381890:CDS | 40.0% | |
| ! | TGATCTGCTGCTTCATCAAT+AGG | + | chr3_1:84242423-84242442 | None:intergenic | 40.0% |
| !! | ACTCCATGAAGATTTTGGTG+GGG | + | chr3_1:84240929-84240948 | None:intergenic | 40.0% |
| ! | CAACTCCATGAAGATTTTGG+TGG | + | chr3_1:84240931-84240950 | None:intergenic | 40.0% |
| CACCAAAATCTTCATGGAGT+TGG | - | chr3_1:84240929-84240948 | Msa0381890:CDS | 40.0% | |
| TATGGACTTGGAATACTTGG+TGG | - | chr3_1:84241007-84241026 | Msa0381890:intron | 40.0% | |
| TTACCACTCTGATTCTGTTG+TGG | + | chr3_1:84241076-84241095 | None:intergenic | 40.0% | |
| CATATTCAACAACTGCATGG+TGG | - | chr3_1:84241142-84241161 | Msa0381890:CDS | 40.0% | |
| CCTGACCTTGTTGAATATCA+TGG | + | chr3_1:84241189-84241208 | None:intergenic | 40.0% | |
| CCATGATATTCAACAAGGTC+AGG | - | chr3_1:84241186-84241205 | Msa0381890:intron | 40.0% | |
| GATATTCAACAAGGTCAGGA+TGG | - | chr3_1:84241190-84241209 | Msa0381890:intron | 40.0% | |
| CACCATGATGTACAACAACA+TGG | - | chr3_1:84241253-84241272 | Msa0381890:intron | 40.0% | |
| GTCCATGTTGTTGTACATCA+TGG | + | chr3_1:84241258-84241277 | None:intergenic | 40.0% | |
| GATGTACAACAACATGGACA+TGG | - | chr3_1:84241259-84241278 | Msa0381890:intron | 40.0% | |
| ATGAACTACCATCCACTTCA+AGG | + | chr3_1:84241375-84241394 | None:intergenic | 40.0% | |
| AAAACGGGAATCTGAATTGC+AGG | + | chr3_1:84241430-84241449 | None:intergenic | 40.0% | |
| !! | TCGGTTTGGTTCAACAAAAC+GGG | + | chr3_1:84241445-84241464 | None:intergenic | 40.0% |
| CAAAAATACGGGGTTACTGT+GGG | + | chr3_1:84241493-84241512 | None:intergenic | 40.0% | |
| CACCATCAGATACCTGTTAA+TGG | - | chr3_1:84241701-84241720 | Msa0381890:intron | 40.0% | |
| CCATCAGATACCTGTTAATG+GGG | - | chr3_1:84241703-84241722 | Msa0381890:intron | 40.0% | |
| ! | AGTTTTTGTGGGAAAAGCCT+TGG | - | chr3_1:84241863-84241882 | Msa0381890:CDS | 40.0% |
| !!! | TTTTTTGGCACAGTACTGTG+TGG | - | chr3_1:84241898-84241917 | Msa0381890:CDS | 40.0% |
| GACATTGGGTTAAGTTTGAG+TGG | - | chr3_1:84242154-84242173 | Msa0381890:CDS | 40.0% | |
| CAAGAGCAAATGGGTGATAA+TGG | - | chr3_1:84242206-84242225 | Msa0381890:CDS | 40.0% | |
| ! | TGATCTGCTGCTTCATCAAT+AGG | + | chr3_1:84242423-84242442 | None:intergenic | 40.0% |
| !!! | ATTTTCTTGGGATGGTGGAG+TGG | + | chr3_1:84240984-84241003 | None:intergenic | 45.0% |
| TTGCCACAACAGAATCAGAG+TGG | - | chr3_1:84241070-84241089 | Msa0381890:CDS | 45.0% | |
| CAACAACATGGACATGGACA+TGG | - | chr3_1:84241265-84241284 | Msa0381890:intron | 45.0% | |
| TGTTGAACCAAACCGAACTG+CGG | - | chr3_1:84241449-84241468 | Msa0381890:intron | 45.0% | |
| TTGATTAAGTGCCCGCAGTT+CGG | + | chr3_1:84241464-84241483 | None:intergenic | 45.0% | |
| AACTGCGGGCACTTAATCAA+TGG | - | chr3_1:84241464-84241483 | Msa0381890:intron | 45.0% | |
| GCAAAAATACGGGGTTACTG+TGG | + | chr3_1:84241494-84241513 | None:intergenic | 45.0% | |
| GCTTGAGATTCATGGAAGGT+TGG | - | chr3_1:84241658-84241677 | Msa0381890:CDS | 45.0% | |
| CCCCATTAACAGGTATCTGA+TGG | + | chr3_1:84241706-84241725 | None:intergenic | 45.0% | |
| TGTGTGGAACGTCATTTAGC+AGG | - | chr3_1:84241914-84241933 | Msa0381890:intron | 45.0% | |
| TGAGACTCTTTGCACTGGAT+TGG | - | chr3_1:84241973-84241992 | Msa0381890:intron | 45.0% | |
| ! | CTCTTTGCACTGGATTGGAT+TGG | - | chr3_1:84241978-84241997 | Msa0381890:intron | 45.0% |
| GTTTGTCCTGGAAATCACGA+CGG | - | chr3_1:84242044-84242063 | Msa0381890:CDS | 45.0% | |
| ATTGGTGGAGCAAGAGCAAA+TGG | - | chr3_1:84242196-84242215 | Msa0381890:CDS | 45.0% | |
| TTGGTGGAGCAAGAGCAAAT+GGG | - | chr3_1:84242197-84242216 | Msa0381890:CDS | 45.0% | |
| !! | ACTTGTTCTGAGAGGTTCCT+AGG | + | chr3_1:84242236-84242255 | None:intergenic | 45.0% |
| AGCAAATCAATGGGAAGGAC+AGG | - | chr3_1:84242645-84242664 | Msa0381890:CDS | 45.0% | |
| !!! | ATTTTCTTGGGATGGTGGAG+TGG | + | chr3_1:84240984-84241003 | None:intergenic | 45.0% |
| TTGCCACAACAGAATCAGAG+TGG | - | chr3_1:84241070-84241089 | Msa0381890:CDS | 45.0% | |
| CAACAACATGGACATGGACA+TGG | - | chr3_1:84241265-84241284 | Msa0381890:intron | 45.0% | |
| TGTTGAACCAAACCGAACTG+CGG | - | chr3_1:84241449-84241468 | Msa0381890:intron | 45.0% | |
| TTGATTAAGTGCCCGCAGTT+CGG | + | chr3_1:84241464-84241483 | None:intergenic | 45.0% | |
| AACTGCGGGCACTTAATCAA+TGG | - | chr3_1:84241464-84241483 | Msa0381890:intron | 45.0% | |
| GCAAAAATACGGGGTTACTG+TGG | + | chr3_1:84241494-84241513 | None:intergenic | 45.0% | |
| GCTTGAGATTCATGGAAGGT+TGG | - | chr3_1:84241658-84241677 | Msa0381890:CDS | 45.0% | |
| CCCCATTAACAGGTATCTGA+TGG | + | chr3_1:84241706-84241725 | None:intergenic | 45.0% | |
| TGTGTGGAACGTCATTTAGC+AGG | - | chr3_1:84241914-84241933 | Msa0381890:intron | 45.0% | |
| TGAGACTCTTTGCACTGGAT+TGG | - | chr3_1:84241973-84241992 | Msa0381890:intron | 45.0% | |
| ! | CTCTTTGCACTGGATTGGAT+TGG | - | chr3_1:84241978-84241997 | Msa0381890:intron | 45.0% |
| GTTTGTCCTGGAAATCACGA+CGG | - | chr3_1:84242044-84242063 | Msa0381890:CDS | 45.0% | |
| ATTGGTGGAGCAAGAGCAAA+TGG | - | chr3_1:84242196-84242215 | Msa0381890:CDS | 45.0% | |
| TTGGTGGAGCAAGAGCAAAT+GGG | - | chr3_1:84242197-84242216 | Msa0381890:CDS | 45.0% | |
| !! | ACTTGTTCTGAGAGGTTCCT+AGG | + | chr3_1:84242236-84242255 | None:intergenic | 45.0% |
| AGCAAATCAATGGGAAGGAC+AGG | - | chr3_1:84242645-84242664 | Msa0381890:CDS | 45.0% | |
| !! | TATTTATTTGAATTATTTAT+AGG | - | chr3_1:84241620-84241639 | Msa0381890:CDS | 5.0% |
| !! | TATTTATTTGAATTATTTAT+AGG | - | chr3_1:84241620-84241639 | Msa0381890:CDS | 5.0% |
| ! | GTTTGTTGGGACAGTGCAGT+GGG | + | chr3_1:84240896-84240915 | None:intergenic | 50.0% |
| !! | AGTTTGTTGGGACAGTGCAG+TGG | + | chr3_1:84240897-84240916 | None:intergenic | 50.0% |
| CTGTCCCAACAAACTCAGCA+TGG | - | chr3_1:84240902-84240921 | Msa0381890:CDS | 50.0% | |
| ! | GGGTCCATGCTGAGTTTGTT+GGG | + | chr3_1:84240909-84240928 | None:intergenic | 50.0% |
| GGACCCCACCAAAATCTTCA+TGG | - | chr3_1:84240923-84240942 | Msa0381890:CDS | 50.0% | |
| GTTGAACCAAACCGAACTGC+GGG | - | chr3_1:84241450-84241469 | Msa0381890:intron | 50.0% | |
| AAATACGGGGTTACTGTGGG+TGG | + | chr3_1:84241490-84241509 | None:intergenic | 50.0% | |
| ! | CCTTTTCCGTCGTGATTTCC+AGG | + | chr3_1:84242053-84242072 | None:intergenic | 50.0% |
| CCTGGAAATCACGACGGAAA+AGG | - | chr3_1:84242050-84242069 | Msa0381890:CDS | 50.0% | |
| !! | TGGGTGATAATGGAACGCCT+AGG | - | chr3_1:84242216-84242235 | Msa0381890:CDS | 50.0% |
| GTAAAGCAGGGTTACCCAGA+TGG | - | chr3_1:84242487-84242506 | Msa0381890:CDS | 50.0% | |
| ! | GTTTGTTGGGACAGTGCAGT+GGG | + | chr3_1:84240896-84240915 | None:intergenic | 50.0% |
| !! | AGTTTGTTGGGACAGTGCAG+TGG | + | chr3_1:84240897-84240916 | None:intergenic | 50.0% |
| CTGTCCCAACAAACTCAGCA+TGG | - | chr3_1:84240902-84240921 | Msa0381890:CDS | 50.0% | |
| ! | GGGTCCATGCTGAGTTTGTT+GGG | + | chr3_1:84240909-84240928 | None:intergenic | 50.0% |
| GGACCCCACCAAAATCTTCA+TGG | - | chr3_1:84240923-84240942 | Msa0381890:CDS | 50.0% | |
| GTTGAACCAAACCGAACTGC+GGG | - | chr3_1:84241450-84241469 | Msa0381890:intron | 50.0% | |
| AAATACGGGGTTACTGTGGG+TGG | + | chr3_1:84241490-84241509 | None:intergenic | 50.0% | |
| ! | CCTTTTCCGTCGTGATTTCC+AGG | + | chr3_1:84242053-84242072 | None:intergenic | 50.0% |
| CCTGGAAATCACGACGGAAA+AGG | - | chr3_1:84242050-84242069 | Msa0381890:CDS | 50.0% | |
| !! | TGGGTGATAATGGAACGCCT+AGG | - | chr3_1:84242216-84242235 | Msa0381890:CDS | 50.0% |
| GTAAAGCAGGGTTACCCAGA+TGG | - | chr3_1:84242487-84242506 | Msa0381890:CDS | 50.0% | |
| GGGGTCCATGCTGAGTTTGT+TGG | + | chr3_1:84240910-84240929 | None:intergenic | 55.0% | |
| TAAGTGCCCGCAGTTCGGTT+TGG | + | chr3_1:84241459-84241478 | None:intergenic | 55.0% | |
| ACTGATGGGGCCCCATTAAC+AGG | + | chr3_1:84241716-84241735 | None:intergenic | 55.0% | |
| ACCTTTCTGTGGGGCCATCT+GGG | + | chr3_1:84242504-84242523 | None:intergenic | 55.0% | |
| TACCTTTCTGTGGGGCCATC+TGG | + | chr3_1:84242505-84242524 | None:intergenic | 55.0% | |
| ATGGGAAGGACAGGATCCAG+AGG | - | chr3_1:84242654-84242673 | Msa0381890:CDS | 55.0% | |
| AAGGACAGGATCCAGAGGCA+AGG | - | chr3_1:84242659-84242678 | Msa0381890:CDS | 55.0% | |
| AGGACAGGATCCAGAGGCAA+GGG | - | chr3_1:84242660-84242679 | Msa0381890:CDS | 55.0% | |
| AGGCAAGGGCAAGGACTGAA+GGG | - | chr3_1:84242674-84242693 | Msa0381890:CDS | 55.0% | |
| GCGATGTCATACAACGCGGT+TGG | + | chr3_1:84242751-84242770 | None:intergenic | 55.0% | |
| GGGGTCCATGCTGAGTTTGT+TGG | + | chr3_1:84240910-84240929 | None:intergenic | 55.0% | |
| TAAGTGCCCGCAGTTCGGTT+TGG | + | chr3_1:84241459-84241478 | None:intergenic | 55.0% | |
| ACTGATGGGGCCCCATTAAC+AGG | + | chr3_1:84241716-84241735 | None:intergenic | 55.0% | |
| ACCTTTCTGTGGGGCCATCT+GGG | + | chr3_1:84242504-84242523 | None:intergenic | 55.0% | |
| TACCTTTCTGTGGGGCCATC+TGG | + | chr3_1:84242505-84242524 | None:intergenic | 55.0% | |
| ATGGGAAGGACAGGATCCAG+AGG | - | chr3_1:84242654-84242673 | Msa0381890:CDS | 55.0% | |
| AAGGACAGGATCCAGAGGCA+AGG | - | chr3_1:84242659-84242678 | Msa0381890:CDS | 55.0% | |
| AGGACAGGATCCAGAGGCAA+GGG | - | chr3_1:84242660-84242679 | Msa0381890:CDS | 55.0% | |
| AGGCAAGGGCAAGGACTGAA+GGG | - | chr3_1:84242674-84242693 | Msa0381890:CDS | 55.0% | |
| GCGATGTCATACAACGCGGT+TGG | + | chr3_1:84242751-84242770 | None:intergenic | 55.0% | |
| ACCCAGATGGCCCCACAGAA+AGG | - | chr3_1:84242500-84242519 | Msa0381890:CDS | 60.0% | |
| AGGATCCAGAGGCAAGGGCA+AGG | - | chr3_1:84242665-84242684 | Msa0381890:CDS | 60.0% | |
| TCAGTCCTTGCCCTTGCCTC+TGG | + | chr3_1:84242673-84242692 | None:intergenic | 60.0% | |
| GAGGCAAGGGCAAGGACTGA+AGG | - | chr3_1:84242673-84242692 | Msa0381890:CDS | 60.0% | |
| GGCAAGGGCAAGGACTGAAG+GGG | - | chr3_1:84242675-84242694 | Msa0381890:CDS | 60.0% | |
| GGCGGCGATGTCATACAACG+CGG | + | chr3_1:84242755-84242774 | None:intergenic | 60.0% | |
| ACCCAGATGGCCCCACAGAA+AGG | - | chr3_1:84242500-84242519 | Msa0381890:CDS | 60.0% | |
| AGGATCCAGAGGCAAGGGCA+AGG | - | chr3_1:84242665-84242684 | Msa0381890:CDS | 60.0% | |
| TCAGTCCTTGCCCTTGCCTC+TGG | + | chr3_1:84242673-84242692 | None:intergenic | 60.0% | |
| GAGGCAAGGGCAAGGACTGA+AGG | - | chr3_1:84242673-84242692 | Msa0381890:CDS | 60.0% | |
| GGCAAGGGCAAGGACTGAAG+GGG | - | chr3_1:84242675-84242694 | Msa0381890:CDS | 60.0% | |
| GGCGGCGATGTCATACAACG+CGG | + | chr3_1:84242755-84242774 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 84240773 | 84242789 | 84240773 | ID=Msa0381890;Name=Msa0381890 |
| chr3_1 | mRNA | 84240773 | 84242789 | 84240773 | ID=Msa0381890-mRNA-1;Parent=Msa0381890;Name=Msa0381890-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|6|0|487 |
| chr3_1 | exon | 84242009 | 84242789 | 84242009 | ID=Msa0381890-mRNA-1:exon:21860;Parent=Msa0381890-mRNA-1 |
| chr3_1 | exon | 84241812 | 84241920 | 84241812 | ID=Msa0381890-mRNA-1:exon:21859;Parent=Msa0381890-mRNA-1 |
| chr3_1 | exon | 84241519 | 84241697 | 84241519 | ID=Msa0381890-mRNA-1:exon:21858;Parent=Msa0381890-mRNA-1 |
| chr3_1 | exon | 84241309 | 84241370 | 84241309 | ID=Msa0381890-mRNA-1:exon:21857;Parent=Msa0381890-mRNA-1 |
| chr3_1 | exon | 84241041 | 84241196 | 84241041 | ID=Msa0381890-mRNA-1:exon:21856;Parent=Msa0381890-mRNA-1 |
| chr3_1 | exon | 84240773 | 84240949 | 84240773 | ID=Msa0381890-mRNA-1:exon:21855;Parent=Msa0381890-mRNA-1 |
| chr3_1 | CDS | 84242009 | 84242789 | 84242009 | ID=Msa0381890-mRNA-1:cds;Parent=Msa0381890-mRNA-1 |
| chr3_1 | CDS | 84241812 | 84241920 | 84241812 | ID=Msa0381890-mRNA-1:cds;Parent=Msa0381890-mRNA-1 |
| chr3_1 | CDS | 84241519 | 84241697 | 84241519 | ID=Msa0381890-mRNA-1:cds;Parent=Msa0381890-mRNA-1 |
| chr3_1 | CDS | 84241309 | 84241370 | 84241309 | ID=Msa0381890-mRNA-1:cds;Parent=Msa0381890-mRNA-1 |
| chr3_1 | CDS | 84241041 | 84241196 | 84241041 | ID=Msa0381890-mRNA-1:cds;Parent=Msa0381890-mRNA-1 |
| chr3_1 | CDS | 84240773 | 84240949 | 84240773 | ID=Msa0381890-mRNA-1:cds;Parent=Msa0381890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
