Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383010 | XP_003603465.1 | 96.266 | 241 | 9 | 0 | 8 | 248 | 966 | 1206 | 3.17e-162 | 491 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383010 | sp|Q9FWQ5|HAC12_ARATH | 45.957 | 235 | 113 | 4 | 10 | 240 | 1468 | 1692 | 2.33e-61 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383010 | G7JBQ0 | 96.266 | 241 | 9 | 0 | 8 | 248 | 966 | 1206 | 1.51e-162 | 491 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0383010 | TR | TAZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383010 | MtrunA17_Chr3g0138411 | 96.266 | 241 | 9 | 0 | 8 | 248 | 966 | 1206 | 2.92e-166 | 491 |
| Msa0383010 | MtrunA17_Chr3g0133461 | 81.124 | 249 | 39 | 2 | 8 | 248 | 1095 | 1343 | 4.88e-138 | 419 |
| Msa0383010 | MtrunA17_Chr5g0438991 | 62.667 | 225 | 39 | 2 | 8 | 232 | 779 | 958 | 2.50e-86 | 275 |
| Msa0383010 | MtrunA17_Chr6g0456861 | 59.746 | 236 | 48 | 2 | 8 | 241 | 582 | 772 | 4.70e-86 | 271 |
| Msa0383010 | MtrunA17_Chr4g0000031 | 45.106 | 235 | 114 | 5 | 10 | 240 | 1472 | 1695 | 8.79e-62 | 209 |
| Msa0383010 | MtrunA17_Chr5g0401991 | 52.469 | 162 | 30 | 2 | 8 | 167 | 105 | 221 | 1.58e-44 | 149 |
| Msa0383010 | MtrunA17_Chr6g0456911 | 61.842 | 76 | 25 | 1 | 6 | 81 | 3 | 74 | 8.63e-27 | 99.0 |
| Msa0383010 | MtrunA17_Chr0c02g0489811 | 73.333 | 60 | 16 | 0 | 4 | 63 | 2 | 61 | 3.74e-24 | 92.0 |
| Msa0383010 | MtrunA17_Chr7g0229221 | 70.000 | 60 | 18 | 0 | 4 | 63 | 2 | 61 | 1.01e-22 | 88.6 |
| Msa0383010 | MtrunA17_Chr6g0456851 | 67.647 | 68 | 22 | 0 | 4 | 71 | 814 | 881 | 1.49e-22 | 96.3 |
| Msa0383010 | MtrunA17_Chr0c02g0489731 | 66.667 | 60 | 20 | 0 | 4 | 63 | 2 | 61 | 9.16e-21 | 83.2 |
| Msa0383010 | MtrunA17_Chr5g0401281 | 40.741 | 81 | 46 | 2 | 161 | 240 | 279 | 358 | 3.53e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383010 | AT1G16710.2 | 45.957 | 235 | 113 | 4 | 10 | 240 | 1439 | 1663 | 1.93e-62 | 211 |
| Msa0383010 | AT1G16710.3 | 45.957 | 235 | 113 | 4 | 10 | 240 | 1442 | 1666 | 2.28e-62 | 211 |
| Msa0383010 | AT1G16710.10 | 45.957 | 235 | 113 | 4 | 10 | 240 | 1442 | 1666 | 2.28e-62 | 211 |
| Msa0383010 | AT1G16710.8 | 45.957 | 235 | 113 | 4 | 10 | 240 | 1442 | 1666 | 2.28e-62 | 211 |
| Msa0383010 | AT1G16710.7 | 45.957 | 235 | 113 | 4 | 10 | 240 | 1442 | 1666 | 2.28e-62 | 211 |
| Msa0383010 | AT1G16710.1 | 45.957 | 235 | 113 | 4 | 10 | 240 | 1468 | 1692 | 2.37e-62 | 211 |
| Msa0383010 | AT1G16710.6 | 45.957 | 235 | 113 | 4 | 10 | 240 | 1403 | 1627 | 2.84e-62 | 211 |
| Msa0383010 | AT1G16710.4 | 45.957 | 235 | 113 | 4 | 10 | 240 | 1403 | 1627 | 2.84e-62 | 211 |
| Msa0383010 | AT1G16710.5 | 45.957 | 235 | 113 | 4 | 10 | 240 | 1403 | 1627 | 2.84e-62 | 211 |
| Msa0383010 | AT1G79000.3 | 45.064 | 233 | 114 | 4 | 12 | 240 | 1437 | 1659 | 5.22e-62 | 210 |
| Msa0383010 | AT1G79000.1 | 45.064 | 233 | 114 | 4 | 12 | 240 | 1461 | 1683 | 5.39e-62 | 210 |
| Msa0383010 | AT1G79000.2 | 43.568 | 241 | 122 | 4 | 4 | 240 | 1453 | 1683 | 6.30e-62 | 210 |
| Msa0383010 | AT3G12980.1 | 40.336 | 238 | 126 | 6 | 4 | 240 | 1433 | 1655 | 1.04e-50 | 178 |
| Msa0383010 | AT3G12980.2 | 40.506 | 237 | 125 | 6 | 5 | 240 | 1353 | 1574 | 1.27e-50 | 177 |
| Msa0383010 | AT1G55970.2 | 37.179 | 234 | 137 | 5 | 8 | 240 | 1219 | 1443 | 4.03e-37 | 139 |
| Msa0383010 | AT1G55970.1 | 37.179 | 234 | 137 | 5 | 8 | 240 | 1233 | 1457 | 4.35e-37 | 139 |
| Msa0383010 | AT1G67220.1 | 35.616 | 219 | 112 | 7 | 15 | 221 | 1160 | 1361 | 9.19e-32 | 123 |
| Msa0383010 | AT5G67480.1 | 42.308 | 78 | 43 | 2 | 159 | 234 | 271 | 348 | 7.04e-13 | 67.8 |
| Msa0383010 | AT5G67480.3 | 42.308 | 78 | 43 | 2 | 159 | 234 | 271 | 348 | 7.04e-13 | 67.8 |
| Msa0383010 | AT5G67480.2 | 42.308 | 78 | 43 | 2 | 159 | 234 | 282 | 359 | 7.36e-13 | 67.8 |
Find 45 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACACCACTATGTCAATT+TGG | 0.177074 | 3_1:-85792017 | Msa0383010:CDS |
| CCAGAGTAGGGTTGTTTAAA+TGG | 0.239132 | 3_1:+85792210 | None:intergenic |
| AGAGTGGATTATTTGAAAAT+AGG | 0.257666 | 3_1:-85792319 | Msa0383010:CDS |
| TTCCGAGTCTTTGCAATTCC+TGG | 0.259668 | 3_1:+85791698 | None:intergenic |
| TTTGAGTCAACTTGTGTTCA+TGG | 0.292920 | 3_1:+85792066 | None:intergenic |
| CATTTGCTCTGCTTGCTATA+AGG | 0.336680 | 3_1:-85792105 | Msa0383010:CDS |
| CAACACCACTATGTCAATTT+GGG | 0.370714 | 3_1:-85792016 | Msa0383010:CDS |
| CAAACTGAAATTGATACTTC+TGG | 0.380328 | 3_1:+85792276 | None:intergenic |
| GGTGCAAAATTCGAGTAAAT+CGG | 0.403532 | 3_1:-85791767 | Msa0383010:CDS |
| AATGTAGAATACCACGTTGC+AGG | 0.414844 | 3_1:-85791677 | Msa0383010:intron |
| AAGCAACACATTCCGAATCT+TGG | 0.427664 | 3_1:-85791445 | Msa0383010:CDS |
| GTGCAAAATTCGAGTAAATC+GGG | 0.429183 | 3_1:-85791766 | Msa0383010:CDS |
| TGCAGCTCCACGCCAAGATT+CGG | 0.450882 | 3_1:+85791433 | None:intergenic |
| ACAATATATTTCAAAAGTGC+TGG | 0.451731 | 3_1:-85792154 | Msa0383010:CDS |
| GTCTTTGCAATTCCTGGAGT+GGG | 0.453840 | 3_1:+85791704 | None:intergenic |
| GCAGAGCAAATGGTACATTC+TGG | 0.456546 | 3_1:+85792116 | None:intergenic |
| TTCTTGATTTGAGAACAGTT+TGG | 0.463384 | 3_1:+85791810 | None:intergenic |
| TAGGGTTGTTTAAATGGTAG+AGG | 0.474232 | 3_1:+85792216 | None:intergenic |
| AACCCTACTCTGGTGACTGT+TGG | 0.474451 | 3_1:-85792200 | Msa0383010:CDS |
| ATCATTATGCTTAGTGTTGG+AGG | 0.477828 | 3_1:+85792352 | None:intergenic |
| GATATCATTATGCTTAGTGT+TGG | 0.494216 | 3_1:+85792349 | None:intergenic |
| CTTATAGCAAGCAGAGCAAA+TGG | 0.504219 | 3_1:+85792106 | None:intergenic |
| TCGTGAGTCAAATGAGAAAA+CGG | 0.506997 | 3_1:-85791991 | Msa0383010:intron |
| TTATACTAACTGCCCACTCC+AGG | 0.508191 | 3_1:-85791716 | Msa0383010:CDS |
| CACGCAGATGCTGAAACTGC+TGG | 0.511708 | 3_1:-85791889 | Msa0383010:intron |
| GATCATCATTGATGAATACT+TGG | 0.516147 | 3_1:+85792238 | None:intergenic |
| CTCCAGGAATTGCAAAGACT+CGG | 0.528433 | 3_1:-85791700 | Msa0383010:CDS |
| TTCCAACAGTCACCAGAGTA+GGG | 0.530507 | 3_1:+85792198 | None:intergenic |
| TTTCCAACAGTCACCAGAGT+AGG | 0.537493 | 3_1:+85792197 | None:intergenic |
| CCATTTAAACAACCCTACTC+TGG | 0.546250 | 3_1:-85792210 | Msa0383010:CDS |
| AGTCTTTGCAATTCCTGGAG+TGG | 0.547250 | 3_1:+85791703 | None:intergenic |
| TCTGCTTGCTATAAGGATAG+AGG | 0.547525 | 3_1:-85792098 | Msa0383010:CDS |
| TTTCAAATAATCCACTCTCA+AGG | 0.548304 | 3_1:+85792324 | None:intergenic |
| CGATTCCCAAATTGACATAG+TGG | 0.580947 | 3_1:+85792011 | None:intergenic |
| TCATTATGCTTAGTGTTGGA+GGG | 0.581798 | 3_1:+85792353 | None:intergenic |
| GAACAGTTTGGATAAGAGCA+TGG | 0.592137 | 3_1:+85791822 | None:intergenic |
| AATGATATCATCCTTGAGAG+TGG | 0.608883 | 3_1:-85792335 | Msa0383010:CDS |
| GCATGGTTCAGTATTAGTTG+CGG | 0.631845 | 3_1:+85791839 | None:intergenic |
| TCATTGATGAATACTTGGCA+CGG | 0.650719 | 3_1:+85792243 | None:intergenic |
| TGCAAAATTCGAGTAAATCG+GGG | 0.651340 | 3_1:-85791765 | Msa0383010:CDS |
| AGCTATTCTCTCATGCTCGT+AGG | 0.662256 | 3_1:-85791788 | Msa0383010:CDS |
| ACACATTCCGAATCTTGGCG+TGG | 0.679411 | 3_1:-85791440 | Msa0383010:CDS |
| ACACATTTCAAAGAATGGCG+AGG | 0.706634 | 3_1:-85792496 | None:intergenic |
| TTGATGAATACTTGGCACGG+CGG | 0.746659 | 3_1:+85792246 | None:intergenic |
| ACAGTAACACACCTGCAACG+TGG | 0.761219 | 3_1:+85791666 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAATAAATATAAAGAAAT+AGG | + | chr3_1:85792293-85792312 | None:intergenic | 10.0% |
| !! | CAAAATAAATATAAAGAAAT+AGG | + | chr3_1:85792293-85792312 | None:intergenic | 10.0% |
| !!! | TATATTTATTTTGATTTTGC+AGG | - | chr3_1:85792300-85792319 | Msa0383010:CDS | 15.0% |
| !!! | ATATTTATTTTGATTTTGCA+GGG | - | chr3_1:85792301-85792320 | Msa0383010:CDS | 15.0% |
| !!! | TATATTTATTTTGATTTTGC+AGG | - | chr3_1:85792300-85792319 | Msa0383010:CDS | 15.0% |
| !!! | ATATTTATTTTGATTTTGCA+GGG | - | chr3_1:85792301-85792320 | Msa0383010:CDS | 15.0% |
| ! | GAAAATCATATGAAAACTTC+AGG | + | chr3_1:85791353-85791372 | None:intergenic | 25.0% |
| ! | AGTAATTTCATGCAAAACAT+TGG | - | chr3_1:85791381-85791400 | Msa0383010:exon | 25.0% |
| !!! | AGAGTGGATTATTTGAAAAT+AGG | - | chr3_1:85791474-85791493 | Msa0383010:CDS | 25.0% |
| !! | ACAATATATTTCAAAAGTGC+TGG | - | chr3_1:85791639-85791658 | Msa0383010:intron | 25.0% |
| ! | CAAATTCTCTCAAATTCTAT+AGG | + | chr3_1:85792168-85792187 | None:intergenic | 25.0% |
| ! | CTATAGAATTTGAGAGAATT+TGG | - | chr3_1:85792166-85792185 | Msa0383010:CDS | 25.0% |
| ! | AAAAAAATGACTGTTGTGAA+AGG | + | chr3_1:85792248-85792267 | None:intergenic | 25.0% |
| ! | GAAAATCATATGAAAACTTC+AGG | + | chr3_1:85791353-85791372 | None:intergenic | 25.0% |
| ! | AGTAATTTCATGCAAAACAT+TGG | - | chr3_1:85791381-85791400 | Msa0383010:exon | 25.0% |
| !!! | AGAGTGGATTATTTGAAAAT+AGG | - | chr3_1:85791474-85791493 | Msa0383010:CDS | 25.0% |
| !! | ACAATATATTTCAAAAGTGC+TGG | - | chr3_1:85791639-85791658 | Msa0383010:intron | 25.0% |
| ! | CAAATTCTCTCAAATTCTAT+AGG | + | chr3_1:85792168-85792187 | None:intergenic | 25.0% |
| ! | CTATAGAATTTGAGAGAATT+TGG | - | chr3_1:85792166-85792185 | Msa0383010:CDS | 25.0% |
| ! | AAAAAAATGACTGTTGTGAA+AGG | + | chr3_1:85792248-85792267 | None:intergenic | 25.0% |
| ! | CATATGAAAACTTCAGGTTT+AGG | + | chr3_1:85791347-85791366 | None:intergenic | 30.0% |
| GATATCATTATGCTTAGTGT+TGG | + | chr3_1:85791447-85791466 | None:intergenic | 30.0% | |
| TTTCAAATAATCCACTCTCA+AGG | + | chr3_1:85791472-85791491 | None:intergenic | 30.0% | |
| CAAACTGAAATTGATACTTC+TGG | + | chr3_1:85791520-85791539 | None:intergenic | 30.0% | |
| GATCATCATTGATGAATACT+TGG | + | chr3_1:85791558-85791577 | None:intergenic | 30.0% | |
| ! | TTCTTGATTTGAGAACAGTT+TGG | + | chr3_1:85791986-85792005 | None:intergenic | 30.0% |
| CTCCTTTCTGATTTATTCTT+TGG | - | chr3_1:85792194-85792213 | Msa0383010:CDS | 30.0% | |
| AGCCAAAGAATAAATCAGAA+AGG | + | chr3_1:85792199-85792218 | None:intergenic | 30.0% | |
| !!! | TCACAACAGTCATTTTTTTG+TGG | - | chr3_1:85792249-85792268 | Msa0383010:CDS | 30.0% |
| ! | CATATGAAAACTTCAGGTTT+AGG | + | chr3_1:85791347-85791366 | None:intergenic | 30.0% |
| GATATCATTATGCTTAGTGT+TGG | + | chr3_1:85791447-85791466 | None:intergenic | 30.0% | |
| TTTCAAATAATCCACTCTCA+AGG | + | chr3_1:85791472-85791491 | None:intergenic | 30.0% | |
| CAAACTGAAATTGATACTTC+TGG | + | chr3_1:85791520-85791539 | None:intergenic | 30.0% | |
| GATCATCATTGATGAATACT+TGG | + | chr3_1:85791558-85791577 | None:intergenic | 30.0% | |
| ! | TTCTTGATTTGAGAACAGTT+TGG | + | chr3_1:85791986-85792005 | None:intergenic | 30.0% |
| CTCCTTTCTGATTTATTCTT+TGG | - | chr3_1:85792194-85792213 | Msa0383010:CDS | 30.0% | |
| AGCCAAAGAATAAATCAGAA+AGG | + | chr3_1:85792199-85792218 | None:intergenic | 30.0% | |
| !!! | TCACAACAGTCATTTTTTTG+TGG | - | chr3_1:85792249-85792268 | Msa0383010:CDS | 30.0% |
| ! | TCATTATGCTTAGTGTTGGA+GGG | + | chr3_1:85791443-85791462 | None:intergenic | 35.0% |
| ! | ATCATTATGCTTAGTGTTGG+AGG | + | chr3_1:85791444-85791463 | None:intergenic | 35.0% |
| AATGATATCATCCTTGAGAG+TGG | - | chr3_1:85791458-85791477 | Msa0383010:CDS | 35.0% | |
| ACTTCTGGCAAAAACTCAAA+AGG | + | chr3_1:85791505-85791524 | None:intergenic | 35.0% | |
| TCATTGATGAATACTTGGCA+CGG | + | chr3_1:85791553-85791572 | None:intergenic | 35.0% | |
| TAGGGTTGTTTAAATGGTAG+AGG | + | chr3_1:85791580-85791599 | None:intergenic | 35.0% | |
| TTTGAGTCAACTTGTGTTCA+TGG | + | chr3_1:85791730-85791749 | None:intergenic | 35.0% | |
| TCAACACCACTATGTCAATT+TGG | - | chr3_1:85791776-85791795 | Msa0383010:CDS | 35.0% | |
| CAACACCACTATGTCAATTT+GGG | - | chr3_1:85791777-85791796 | Msa0383010:CDS | 35.0% | |
| TCGTGAGTCAAATGAGAAAA+CGG | - | chr3_1:85791802-85791821 | Msa0383010:CDS | 35.0% | |
| ACGGTATGAACTTAATTCTC+AGG | - | chr3_1:85791821-85791840 | Msa0383010:CDS | 35.0% | |
| GGTGCAAAATTCGAGTAAAT+CGG | - | chr3_1:85792026-85792045 | Msa0383010:CDS | 35.0% | |
| GTGCAAAATTCGAGTAAATC+GGG | - | chr3_1:85792027-85792046 | Msa0383010:CDS | 35.0% | |
| TGCAAAATTCGAGTAAATCG+GGG | - | chr3_1:85792028-85792047 | Msa0383010:CDS | 35.0% | |
| ! | ACCATATCTTTTTACAGTGC+TGG | + | chr3_1:85792057-85792076 | None:intergenic | 35.0% |
| ! | TCATTATGCTTAGTGTTGGA+GGG | + | chr3_1:85791443-85791462 | None:intergenic | 35.0% |
| ! | ATCATTATGCTTAGTGTTGG+AGG | + | chr3_1:85791444-85791463 | None:intergenic | 35.0% |
| AATGATATCATCCTTGAGAG+TGG | - | chr3_1:85791458-85791477 | Msa0383010:CDS | 35.0% | |
| ACTTCTGGCAAAAACTCAAA+AGG | + | chr3_1:85791505-85791524 | None:intergenic | 35.0% | |
| TCATTGATGAATACTTGGCA+CGG | + | chr3_1:85791553-85791572 | None:intergenic | 35.0% | |
| TAGGGTTGTTTAAATGGTAG+AGG | + | chr3_1:85791580-85791599 | None:intergenic | 35.0% | |
| TTTGAGTCAACTTGTGTTCA+TGG | + | chr3_1:85791730-85791749 | None:intergenic | 35.0% | |
| TCAACACCACTATGTCAATT+TGG | - | chr3_1:85791776-85791795 | Msa0383010:CDS | 35.0% | |
| CAACACCACTATGTCAATTT+GGG | - | chr3_1:85791777-85791796 | Msa0383010:CDS | 35.0% | |
| TCGTGAGTCAAATGAGAAAA+CGG | - | chr3_1:85791802-85791821 | Msa0383010:CDS | 35.0% | |
| ACGGTATGAACTTAATTCTC+AGG | - | chr3_1:85791821-85791840 | Msa0383010:CDS | 35.0% | |
| GGTGCAAAATTCGAGTAAAT+CGG | - | chr3_1:85792026-85792045 | Msa0383010:CDS | 35.0% | |
| GTGCAAAATTCGAGTAAATC+GGG | - | chr3_1:85792027-85792046 | Msa0383010:CDS | 35.0% | |
| TGCAAAATTCGAGTAAATCG+GGG | - | chr3_1:85792028-85792047 | Msa0383010:CDS | 35.0% | |
| ! | ACCATATCTTTTTACAGTGC+TGG | + | chr3_1:85792057-85792076 | None:intergenic | 35.0% |
| !!! | TTGGATTGTGTGCTGTTTTC+AGG | - | chr3_1:85791400-85791419 | Msa0383010:CDS | 40.0% |
| CCAGAGTAGGGTTGTTTAAA+TGG | + | chr3_1:85791586-85791605 | None:intergenic | 40.0% | |
| CCATTTAAACAACCCTACTC+TGG | - | chr3_1:85791583-85791602 | Msa0383010:intron | 40.0% | |
| CTTATAGCAAGCAGAGCAAA+TGG | + | chr3_1:85791690-85791709 | None:intergenic | 40.0% | |
| !! | CATTTGCTCTGCTTGCTATA+AGG | - | chr3_1:85791688-85791707 | Msa0383010:CDS | 40.0% |
| !! | TCTGCTTGCTATAAGGATAG+AGG | - | chr3_1:85791695-85791714 | Msa0383010:CDS | 40.0% |
| CGATTCCCAAATTGACATAG+TGG | + | chr3_1:85791785-85791804 | None:intergenic | 40.0% | |
| GCATGGTTCAGTATTAGTTG+CGG | + | chr3_1:85791957-85791976 | None:intergenic | 40.0% | |
| GAACAGTTTGGATAAGAGCA+TGG | + | chr3_1:85791974-85791993 | None:intergenic | 40.0% | |
| GCCAGCACTGTAAAAAGATA+TGG | - | chr3_1:85792053-85792072 | Msa0383010:CDS | 40.0% | |
| AATGTAGAATACCACGTTGC+AGG | - | chr3_1:85792116-85792135 | Msa0383010:CDS | 40.0% | |
| AAGCAACACATTCCGAATCT+TGG | - | chr3_1:85792348-85792367 | Msa0383010:CDS | 40.0% | |
| !!! | TTGGATTGTGTGCTGTTTTC+AGG | - | chr3_1:85791400-85791419 | Msa0383010:CDS | 40.0% |
| CCAGAGTAGGGTTGTTTAAA+TGG | + | chr3_1:85791586-85791605 | None:intergenic | 40.0% | |
| CCATTTAAACAACCCTACTC+TGG | - | chr3_1:85791583-85791602 | Msa0383010:intron | 40.0% | |
| CTTATAGCAAGCAGAGCAAA+TGG | + | chr3_1:85791690-85791709 | None:intergenic | 40.0% | |
| !! | CATTTGCTCTGCTTGCTATA+AGG | - | chr3_1:85791688-85791707 | Msa0383010:CDS | 40.0% |
| !! | TCTGCTTGCTATAAGGATAG+AGG | - | chr3_1:85791695-85791714 | Msa0383010:CDS | 40.0% |
| CGATTCCCAAATTGACATAG+TGG | + | chr3_1:85791785-85791804 | None:intergenic | 40.0% | |
| GCATGGTTCAGTATTAGTTG+CGG | + | chr3_1:85791957-85791976 | None:intergenic | 40.0% | |
| GAACAGTTTGGATAAGAGCA+TGG | + | chr3_1:85791974-85791993 | None:intergenic | 40.0% | |
| GCCAGCACTGTAAAAAGATA+TGG | - | chr3_1:85792053-85792072 | Msa0383010:CDS | 40.0% | |
| AATGTAGAATACCACGTTGC+AGG | - | chr3_1:85792116-85792135 | Msa0383010:CDS | 40.0% | |
| AAGCAACACATTCCGAATCT+TGG | - | chr3_1:85792348-85792367 | Msa0383010:CDS | 40.0% | |
| TTGATGAATACTTGGCACGG+CGG | + | chr3_1:85791550-85791569 | None:intergenic | 45.0% | |
| TTCCAACAGTCACCAGAGTA+GGG | + | chr3_1:85791598-85791617 | None:intergenic | 45.0% | |
| TTTCCAACAGTCACCAGAGT+AGG | + | chr3_1:85791599-85791618 | None:intergenic | 45.0% | |
| GCAGAGCAAATGGTACATTC+TGG | + | chr3_1:85791680-85791699 | None:intergenic | 45.0% | |
| AGCTATTCTCTCATGCTCGT+AGG | - | chr3_1:85792005-85792024 | Msa0383010:CDS | 45.0% | |
| TTATACTAACTGCCCACTCC+AGG | - | chr3_1:85792077-85792096 | Msa0383010:CDS | 45.0% | |
| GTCTTTGCAATTCCTGGAGT+GGG | + | chr3_1:85792092-85792111 | None:intergenic | 45.0% | |
| AGTCTTTGCAATTCCTGGAG+TGG | + | chr3_1:85792093-85792112 | None:intergenic | 45.0% | |
| CTCCAGGAATTGCAAAGACT+CGG | - | chr3_1:85792093-85792112 | Msa0383010:CDS | 45.0% | |
| TTCCGAGTCTTTGCAATTCC+TGG | + | chr3_1:85792098-85792117 | None:intergenic | 45.0% | |
| TTGATGAATACTTGGCACGG+CGG | + | chr3_1:85791550-85791569 | None:intergenic | 45.0% | |
| TTCCAACAGTCACCAGAGTA+GGG | + | chr3_1:85791598-85791617 | None:intergenic | 45.0% | |
| TTTCCAACAGTCACCAGAGT+AGG | + | chr3_1:85791599-85791618 | None:intergenic | 45.0% | |
| GCAGAGCAAATGGTACATTC+TGG | + | chr3_1:85791680-85791699 | None:intergenic | 45.0% | |
| AGCTATTCTCTCATGCTCGT+AGG | - | chr3_1:85792005-85792024 | Msa0383010:CDS | 45.0% | |
| TTATACTAACTGCCCACTCC+AGG | - | chr3_1:85792077-85792096 | Msa0383010:CDS | 45.0% | |
| GTCTTTGCAATTCCTGGAGT+GGG | + | chr3_1:85792092-85792111 | None:intergenic | 45.0% | |
| AGTCTTTGCAATTCCTGGAG+TGG | + | chr3_1:85792093-85792112 | None:intergenic | 45.0% | |
| CTCCAGGAATTGCAAAGACT+CGG | - | chr3_1:85792093-85792112 | Msa0383010:CDS | 45.0% | |
| TTCCGAGTCTTTGCAATTCC+TGG | + | chr3_1:85792098-85792117 | None:intergenic | 45.0% | |
| CGAGGTGCATACACTATGTC+AGG | - | chr3_1:85791315-85791334 | Msa0383010:three_prime_UTR | 50.0% | |
| AACCCTACTCTGGTGACTGT+TGG | - | chr3_1:85791593-85791612 | Msa0383010:intron | 50.0% | |
| ACAGTAACACACCTGCAACG+TGG | + | chr3_1:85792130-85792149 | None:intergenic | 50.0% | |
| ACACATTCCGAATCTTGGCG+TGG | - | chr3_1:85792353-85792372 | Msa0383010:CDS | 50.0% | |
| CGAGGTGCATACACTATGTC+AGG | - | chr3_1:85791315-85791334 | Msa0383010:three_prime_UTR | 50.0% | |
| AACCCTACTCTGGTGACTGT+TGG | - | chr3_1:85791593-85791612 | Msa0383010:intron | 50.0% | |
| ACAGTAACACACCTGCAACG+TGG | + | chr3_1:85792130-85792149 | None:intergenic | 50.0% | |
| ACACATTCCGAATCTTGGCG+TGG | - | chr3_1:85792353-85792372 | Msa0383010:CDS | 50.0% | |
| CACGCAGATGCTGAAACTGC+TGG | - | chr3_1:85791904-85791923 | Msa0383010:intron | 55.0% | |
| TGCAGCTCCACGCCAAGATT+CGG | + | chr3_1:85792363-85792382 | None:intergenic | 55.0% | |
| CACGCAGATGCTGAAACTGC+TGG | - | chr3_1:85791904-85791923 | Msa0383010:intron | 55.0% | |
| TGCAGCTCCACGCCAAGATT+CGG | + | chr3_1:85792363-85792382 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 85791311 | 85792504 | 85791311 | ID=Msa0383010;Name=Msa0383010 |
| chr3_1 | mRNA | 85791311 | 85792504 | 85791311 | ID=Msa0383010-mRNA-1;Parent=Msa0383010;Name=Msa0383010-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.66|0.5|0.75|1|1|4|86|248 |
| chr3_1 | exon | 85791311 | 85791493 | 85791311 | ID=Msa0383010-mRNA-1:exon:22652;Parent=Msa0383010-mRNA-1 |
| chr3_1 | exon | 85791678 | 85791904 | 85791678 | ID=Msa0383010-mRNA-1:exon:22651;Parent=Msa0383010-mRNA-1 |
| chr3_1 | exon | 85791992 | 85792393 | 85791992 | ID=Msa0383010-mRNA-1:exon:22650;Parent=Msa0383010-mRNA-1 |
| chr3_1 | exon | 85792484 | 85792504 | 85792484 | ID=Msa0383010-mRNA-1:exon:22649;Parent=Msa0383010-mRNA-1 |
| chr3_1 | CDS | 85792484 | 85792504 | 85792484 | ID=Msa0383010-mRNA-1:cds;Parent=Msa0383010-mRNA-1 |
| chr3_1 | CDS | 85791992 | 85792393 | 85791992 | ID=Msa0383010-mRNA-1:cds;Parent=Msa0383010-mRNA-1 |
| chr3_1 | CDS | 85791678 | 85791904 | 85791678 | ID=Msa0383010-mRNA-1:cds;Parent=Msa0383010-mRNA-1 |
| chr3_1 | CDS | 85791397 | 85791493 | 85791397 | ID=Msa0383010-mRNA-1:cds;Parent=Msa0383010-mRNA-1 |
| chr3_1 | three_prime_UTR | 85791311 | 85791396 | 85791311 | ID=Msa0383010-mRNA-1:three_prime_utr;Parent=Msa0383010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
