Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384770 | XP_013462165.2 | 91.765 | 595 | 37 | 4 | 1 | 591 | 1 | 587 | 0.0 | 1118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384770 | sp|Q9FWS9|BLH3_ARATH | 48.166 | 409 | 178 | 8 | 32 | 430 | 47 | 431 | 1.05e-107 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384770 | A0A072VDF1 | 91.597 | 595 | 38 | 4 | 1 | 591 | 1 | 587 | 0.0 | 1117 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0384770 | TF | HB-BELL |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384770 | MtrunA17_Chr3g0141941 | 93.287 | 432 | 29 | 0 | 1 | 432 | 1 | 432 | 0.0 | 848 |
| Msa0384770 | MtrunA17_Chr3g0141941 | 91.954 | 87 | 4 | 2 | 508 | 591 | 431 | 517 | 4.44e-42 | 159 |
| Msa0384770 | MtrunA17_Chr1g0155681 | 60.526 | 646 | 181 | 19 | 1 | 591 | 1 | 627 | 0.0 | 691 |
| Msa0384770 | MtrunA17_Chr4g0025521 | 56.429 | 280 | 109 | 6 | 162 | 434 | 217 | 490 | 8.47e-86 | 281 |
| Msa0384770 | MtrunA17_Chr1g0177751 | 55.556 | 279 | 109 | 5 | 162 | 430 | 161 | 434 | 3.73e-85 | 278 |
| Msa0384770 | MtrunA17_Chr8g0373801 | 51.095 | 274 | 117 | 5 | 158 | 420 | 384 | 651 | 1.32e-82 | 276 |
| Msa0384770 | MtrunA17_Chr7g0267481 | 55.472 | 265 | 108 | 4 | 163 | 420 | 172 | 433 | 4.80e-82 | 270 |
| Msa0384770 | MtrunA17_Chr5g0403251 | 50.000 | 272 | 117 | 4 | 161 | 421 | 337 | 600 | 4.02e-81 | 270 |
| Msa0384770 | MtrunA17_Chr8g0387321 | 47.518 | 282 | 122 | 6 | 141 | 408 | 163 | 432 | 1.24e-75 | 252 |
| Msa0384770 | MtrunA17_Chr3g0141931 | 46.075 | 293 | 124 | 8 | 156 | 431 | 159 | 434 | 3.43e-72 | 238 |
| Msa0384770 | MtrunA17_Chr7g0240371 | 37.278 | 338 | 173 | 9 | 158 | 489 | 133 | 437 | 4.02e-60 | 208 |
| Msa0384770 | MtrunA17_Chr4g0008591 | 40.278 | 288 | 145 | 5 | 158 | 441 | 192 | 456 | 2.80e-58 | 205 |
| Msa0384770 | MtrunA17_Chr2g0327021 | 40.000 | 310 | 137 | 7 | 158 | 441 | 244 | 530 | 4.79e-58 | 205 |
| Msa0384770 | MtrunA17_Chr4g0028701 | 42.000 | 300 | 132 | 7 | 158 | 415 | 241 | 540 | 1.25e-56 | 202 |
| Msa0384770 | MtrunA17_Chr1g0151681 | 39.464 | 261 | 146 | 6 | 159 | 414 | 240 | 493 | 1.09e-43 | 163 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384770 | AT1G75410.1 | 48.166 | 409 | 178 | 8 | 32 | 430 | 47 | 431 | 1.07e-108 | 336 |
| Msa0384770 | AT1G75410.2 | 48.166 | 409 | 178 | 8 | 32 | 430 | 47 | 431 | 1.07e-108 | 336 |
| Msa0384770 | AT1G19700.1 | 49.161 | 417 | 163 | 14 | 34 | 428 | 46 | 435 | 2.04e-108 | 336 |
| Msa0384770 | AT1G19700.3 | 49.161 | 417 | 163 | 14 | 34 | 428 | 46 | 435 | 2.04e-108 | 336 |
| Msa0384770 | AT1G19700.5 | 49.161 | 417 | 163 | 14 | 34 | 428 | 46 | 435 | 2.04e-108 | 336 |
| Msa0384770 | AT1G19700.4 | 49.161 | 417 | 163 | 14 | 34 | 428 | 46 | 435 | 2.04e-108 | 336 |
| Msa0384770 | AT1G19700.2 | 49.161 | 417 | 163 | 14 | 34 | 428 | 46 | 435 | 2.04e-108 | 336 |
| Msa0384770 | AT2G16400.1 | 44.589 | 462 | 173 | 13 | 141 | 591 | 93 | 482 | 2.52e-107 | 331 |
| Msa0384770 | AT4G34610.2 | 45.351 | 441 | 176 | 14 | 165 | 591 | 143 | 532 | 2.57e-102 | 320 |
| Msa0384770 | AT4G34610.4 | 45.351 | 441 | 176 | 14 | 165 | 591 | 143 | 532 | 2.57e-102 | 320 |
| Msa0384770 | AT4G34610.3 | 45.351 | 441 | 176 | 14 | 165 | 591 | 143 | 532 | 2.57e-102 | 320 |
| Msa0384770 | AT4G34610.1 | 45.351 | 441 | 176 | 14 | 165 | 591 | 143 | 532 | 2.57e-102 | 320 |
| Msa0384770 | AT1G75410.3 | 46.092 | 371 | 166 | 8 | 32 | 392 | 47 | 393 | 1.05e-87 | 278 |
| Msa0384770 | AT2G23760.2 | 53.612 | 263 | 98 | 6 | 165 | 413 | 240 | 492 | 9.52e-80 | 264 |
| Msa0384770 | AT2G23760.1 | 53.612 | 263 | 98 | 6 | 165 | 413 | 240 | 492 | 9.52e-80 | 264 |
| Msa0384770 | AT2G23760.3 | 53.612 | 263 | 98 | 6 | 165 | 413 | 240 | 492 | 9.52e-80 | 264 |
| Msa0384770 | AT2G35940.3 | 50.189 | 265 | 112 | 5 | 158 | 406 | 186 | 446 | 2.61e-77 | 258 |
| Msa0384770 | AT2G35940.1 | 50.189 | 265 | 112 | 5 | 158 | 406 | 186 | 446 | 2.61e-77 | 258 |
| Msa0384770 | AT2G35940.2 | 50.189 | 265 | 112 | 5 | 158 | 406 | 186 | 446 | 2.61e-77 | 258 |
| Msa0384770 | AT4G36870.2 | 50.562 | 267 | 109 | 6 | 161 | 414 | 311 | 567 | 1.99e-76 | 258 |
| Msa0384770 | AT4G36870.1 | 50.562 | 267 | 109 | 6 | 161 | 414 | 311 | 567 | 1.99e-76 | 258 |
| Msa0384770 | AT2G23760.4 | 44.762 | 315 | 98 | 7 | 165 | 413 | 240 | 544 | 1.15e-69 | 238 |
| Msa0384770 | AT2G27220.1 | 47.177 | 248 | 100 | 4 | 168 | 415 | 82 | 298 | 1.44e-66 | 223 |
| Msa0384770 | AT2G27220.3 | 47.177 | 248 | 100 | 4 | 168 | 415 | 82 | 298 | 1.44e-66 | 223 |
| Msa0384770 | AT2G27220.2 | 43.985 | 266 | 100 | 5 | 168 | 415 | 82 | 316 | 1.35e-62 | 213 |
| Msa0384770 | AT5G41410.1 | 39.506 | 324 | 144 | 7 | 232 | 538 | 265 | 553 | 1.34e-61 | 215 |
| Msa0384770 | AT1G75430.1 | 41.758 | 273 | 130 | 7 | 163 | 419 | 17 | 276 | 1.39e-61 | 206 |
| Msa0384770 | AT4G36870.4 | 47.561 | 246 | 106 | 6 | 161 | 393 | 311 | 546 | 6.16e-61 | 211 |
| Msa0384770 | AT4G36870.3 | 47.541 | 244 | 105 | 6 | 161 | 391 | 311 | 544 | 6.10e-60 | 209 |
| Msa0384770 | AT5G02030.1 | 42.701 | 274 | 120 | 6 | 158 | 415 | 166 | 418 | 4.22e-55 | 196 |
| Msa0384770 | AT2G27990.1 | 41.985 | 262 | 123 | 5 | 158 | 415 | 258 | 494 | 6.67e-51 | 185 |
| Msa0384770 | AT4G32980.1 | 38.433 | 268 | 135 | 6 | 156 | 414 | 195 | 441 | 2.07e-46 | 170 |
| Msa0384770 | AT4G32980.2 | 38.433 | 268 | 135 | 6 | 156 | 414 | 195 | 441 | 2.07e-46 | 170 |
| Msa0384770 | AT1G75430.2 | 34.667 | 225 | 118 | 7 | 163 | 371 | 17 | 228 | 8.03e-30 | 119 |
| Msa0384770 | AT2G27990.2 | 34.404 | 218 | 114 | 5 | 158 | 371 | 258 | 450 | 3.31e-25 | 109 |
Find 136 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCTTTGGACATGGTTGC+TGG | 0.171008 | 3_1:-88073470 | Msa0384770:CDS |
| AGGAGTTAATATTATTTAAT+TGG | 0.235821 | 3_1:-88075700 | Msa0384770:five_prime_UTR |
| TTAATGCGCGTGTGCGTCTT+TGG | 0.241731 | 3_1:-88072822 | Msa0384770:CDS |
| GACTATCATTTCACAGATTC+AGG | 0.242730 | 3_1:-88072313 | Msa0384770:CDS |
| ATCCAACAAGTTCTGTCTTT+CGG | 0.296338 | 3_1:+88073845 | None:intergenic |
| GCAAATTGTGGTGTCATCTT+TGG | 0.309506 | 3_1:-88073483 | Msa0384770:CDS |
| TCATGAGATTAATAATAAAT+TGG | 0.315537 | 3_1:-88072698 | Msa0384770:CDS |
| CCCAACCAAGCATTCTCTTC+AGG | 0.317247 | 3_1:-88074542 | Msa0384770:CDS |
| CATCTTTGGACATGGTTGCT+GGG | 0.322770 | 3_1:-88073469 | Msa0384770:CDS |
| CCTTAAGATATTGAGAGTTT+AGG | 0.323728 | 3_1:+88074060 | None:intergenic |
| CCTAAACTCTCAATATCTTA+AGG | 0.324664 | 3_1:-88074060 | Msa0384770:CDS |
| CTCCAAGGTAAAAGAGATTA+TGG | 0.332690 | 3_1:-88072721 | Msa0384770:CDS |
| TTTCCATTCCACGTTGCTTT+CGG | 0.349688 | 3_1:+88074003 | None:intergenic |
| CACATATGATTTAATAGAGT+TGG | 0.365395 | 3_1:-88072500 | Msa0384770:CDS |
| GAAATATACAAAGAAGAGTT+TGG | 0.368762 | 3_1:-88072784 | Msa0384770:CDS |
| CGCAAAGCAAGTGTAGTATA+TGG | 0.389402 | 3_1:+88073431 | None:intergenic |
| ACATATACTCTCTCTGTTGT+TGG | 0.390656 | 3_1:-88075619 | Msa0384770:intron |
| CAGAGCAAGCAGAGTTTCAA+TGG | 0.390687 | 3_1:+88075541 | None:intergenic |
| AAGTGATTCAAAGGAACCTT+GGG | 0.404482 | 3_1:-88073355 | Msa0384770:CDS |
| ATTCTCTTCAGGGTCCTATA+TGG | 0.406017 | 3_1:-88074531 | Msa0384770:CDS |
| CAGTCTATGCAAATAACTTC+GGG | 0.408568 | 3_1:-88073915 | Msa0384770:CDS |
| TATGGTATCAGGTGGCAAAT+TGG | 0.411576 | 3_1:-88072849 | Msa0384770:intron |
| AATGTGATAGATTGTGGAAA+TGG | 0.412066 | 3_1:-88072592 | Msa0384770:CDS |
| TTGAGAGTTTAGGAAAATGT+TGG | 0.412411 | 3_1:+88074070 | None:intergenic |
| GGGAACAAGAACCTCACTTC+TGG | 0.413629 | 3_1:+88074602 | None:intergenic |
| CGAAACCGGTGTCATTATAC+TGG | 0.413951 | 3_1:+88074273 | None:intergenic |
| GTTACGAAAACACTCCCTTT+TGG | 0.415298 | 3_1:+88074136 | None:intergenic |
| GGAAAGCAACAACACATGTT+TGG | 0.421673 | 3_1:-88072292 | Msa0384770:CDS |
| TCATTATACTGGTATTGAAA+TGG | 0.422426 | 3_1:+88074284 | None:intergenic |
| GTTAATATTATTTAATTGGT+TGG | 0.422496 | 3_1:-88075696 | Msa0384770:five_prime_UTR |
| CTGTTTCAATACTTCGTGCT+TGG | 0.423440 | 3_1:-88073211 | Msa0384770:CDS |
| CCAACCAAGCATTCTCTTCA+GGG | 0.428447 | 3_1:-88074541 | Msa0384770:CDS |
| ATAATAATATTACAGATGAT+TGG | 0.428620 | 3_1:-88072033 | Msa0384770:three_prime_UTR |
| TTGTATATTTCTTCAACCAT+TGG | 0.430158 | 3_1:+88072796 | None:intergenic |
| AACTGGTTTGACAAGGAATC+AGG | 0.432153 | 3_1:-88072959 | Msa0384770:intron |
| CATTGAAACTCTGCTTGCTC+TGG | 0.436708 | 3_1:-88075540 | Msa0384770:intron |
| TCCTTTGAATCACTTGAACT+TGG | 0.447044 | 3_1:+88073363 | None:intergenic |
| ATTCATCAGCGATACGAAAC+CGG | 0.447145 | 3_1:+88074259 | None:intergenic |
| ATAATGCTAGCTAGGCAAAC+TGG | 0.452403 | 3_1:-88072976 | Msa0384770:CDS |
| CCCTGAAGAGAATGCTTGGT+TGG | 0.454991 | 3_1:+88074541 | None:intergenic |
| TTAGATATAGTAGTTCCCTT+TGG | 0.461116 | 3_1:+88074224 | None:intergenic |
| ACATATGATTTAATAGAGTT+GGG | 0.462874 | 3_1:-88072499 | Msa0384770:CDS |
| GTACCGTTCTTCCAATGATA+AGG | 0.462927 | 3_1:-88075674 | Msa0384770:five_prime_UTR |
| CAAAAGGCACTTCAGCATCT+TGG | 0.463824 | 3_1:-88073281 | Msa0384770:CDS |
| GGAGGGACAGATGCATTAGA+AGG | 0.464657 | 3_1:+88074305 | None:intergenic |
| TGCATGGAAAGCATGTCTTC+CGG | 0.466072 | 3_1:-88074176 | Msa0384770:CDS |
| ATCTTTGGACATGGTTGCTG+GGG | 0.467421 | 3_1:-88073468 | Msa0384770:CDS |
| CAGAGAAAATAATGCTAGCT+AGG | 0.467771 | 3_1:-88072984 | Msa0384770:CDS |
| CAAGTTCTGTCTTTCGGCTG+AGG | 0.471991 | 3_1:+88073851 | None:intergenic |
| ACCAAGTTTAACACACCTAT+AGG | 0.472281 | 3_1:-88074440 | Msa0384770:CDS |
| TACACGTTCTCTCGTGGAAG+AGG | 0.476889 | 3_1:+88072621 | None:intergenic |
| AGACAAGATCAGCACTTGTT+GGG | 0.477704 | 3_1:+88074582 | None:intergenic |
| CGAGGTGAACATATCCATAT+AGG | 0.479681 | 3_1:+88074517 | None:intergenic |
| ATAGTCACTGTGTCGCCTAT+AGG | 0.482382 | 3_1:+88074425 | None:intergenic |
| CAAGTGATTCAAAGGAACCT+TGG | 0.483068 | 3_1:-88073356 | Msa0384770:CDS |
| CTCCTCAGATCACTGCCTGC+AGG | 0.488491 | 3_1:-88074108 | Msa0384770:CDS |
| GCCTATAGGTGTGTTAAACT+TGG | 0.490982 | 3_1:+88074439 | None:intergenic |
| GGTAATGTCATGAAATCCTC+CGG | 0.496563 | 3_1:+88074157 | None:intergenic |
| GGATATCTCACAAGAAGGAT+TGG | 0.496624 | 3_1:+88073872 | None:intergenic |
| AAGACCGACCACCTTATCAT+TGG | 0.498200 | 3_1:+88075663 | None:intergenic |
| TCAGTCTATGCAAATAACTT+CGG | 0.500629 | 3_1:-88073916 | Msa0384770:CDS |
| AAACAACAGCATATGGTTTG+AGG | 0.501962 | 3_1:+88072173 | None:intergenic |
| TCACAATGTCTCTCTTGCAT+TGG | 0.504072 | 3_1:-88072446 | Msa0384770:CDS |
| AAGACAAGATCAGCACTTGT+TGG | 0.508388 | 3_1:+88074581 | None:intergenic |
| GGATTGGAATTAGAATCATT+AGG | 0.508994 | 3_1:+88073888 | None:intergenic |
| AGCATTGGAATGCTCATCAA+TGG | 0.509427 | 3_1:+88074397 | None:intergenic |
| CCAACAGCTTAGGCAACAAA+AGG | 0.510811 | 3_1:-88073297 | Msa0384770:CDS |
| CGAGACTAAGAGATAACTCT+TGG | 0.512889 | 3_1:+88074339 | None:intergenic |
| ACACCACAATTTGCATTCGA+TGG | 0.516116 | 3_1:+88073492 | None:intergenic |
| TACATGAGAGCTGTAAGCAT+TGG | 0.517302 | 3_1:+88074382 | None:intergenic |
| CCTGAAGAGAATGCTTGGTT+GGG | 0.517326 | 3_1:+88074542 | None:intergenic |
| GATTTCATGACATTACCAAA+AGG | 0.521517 | 3_1:-88074151 | Msa0384770:CDS |
| TGTCCGAAAGCAACGTGGAA+TGG | 0.521567 | 3_1:-88074006 | Msa0384770:CDS |
| TCATCTGAAAATACACTCCA+AGG | 0.523657 | 3_1:-88072736 | Msa0384770:CDS |
| CAAGAGTTATCTCTTAGTCT+CGG | 0.528666 | 3_1:-88074338 | Msa0384770:CDS |
| AGCCGAAAGACAGAACTTGT+TGG | 0.531781 | 3_1:-88073847 | Msa0384770:CDS |
| TAAGCTGTTGGTCCACGTAC+CGG | 0.539458 | 3_1:+88073309 | None:intergenic |
| AAGAGTTATCTCTTAGTCTC+GGG | 0.540585 | 3_1:-88074337 | Msa0384770:CDS |
| AGGACCCTGAAGAGAATGCT+TGG | 0.541911 | 3_1:+88074537 | None:intergenic |
| GTATTCCTTCTTGTTCCCCA+AGG | 0.544341 | 3_1:+88073339 | None:intergenic |
| ATTTCATGACATTACCAAAA+GGG | 0.544569 | 3_1:-88074150 | Msa0384770:CDS |
| TCTTTGGACATGGTTGCTGG+GGG | 0.546073 | 3_1:-88073467 | Msa0384770:CDS |
| ACCAAGTTCAAGTGATTCAA+AGG | 0.549397 | 3_1:-88073364 | Msa0384770:CDS |
| GGTACGTGGACCAACAGCTT+AGG | 0.555219 | 3_1:-88073307 | Msa0384770:CDS |
| GAATGCTTGTCGTCTTCCAA+AGG | 0.555351 | 3_1:-88074240 | Msa0384770:CDS |
| TTGGTGTTATGCGGCAAGCA+TGG | 0.558919 | 3_1:-88073262 | Msa0384770:CDS |
| AAAGGTATCTTATCTCTGAA+AGG | 0.565009 | 3_1:-88072203 | Msa0384770:three_prime_UTR |
| CACTGCCTGCAGGATTCACA+AGG | 0.565086 | 3_1:-88074098 | Msa0384770:CDS |
| TTCAGCATCTTGGTGTTATG+CGG | 0.567244 | 3_1:-88073271 | Msa0384770:CDS |
| CAACTCTATTAAATCATATG+TGG | 0.568553 | 3_1:+88072501 | None:intergenic |
| TTATACTGGTATTGAAATGG+AGG | 0.572976 | 3_1:+88074287 | None:intergenic |
| AAGAAGGAATACCTCGTCTC+CGG | 0.574564 | 3_1:-88073328 | Msa0384770:CDS |
| GATAATCCCAACGATAGTGA+TGG | 0.576493 | 3_1:-88073951 | Msa0384770:CDS |
| GGCAGTGATCTGAGGAGTGA+GGG | 0.576558 | 3_1:+88074114 | None:intergenic |
| AGGAACCTTGGGGAACAAGA+AGG | 0.579072 | 3_1:-88073344 | Msa0384770:CDS |
| AATACCTCGTCTCCGGTACG+TGG | 0.579283 | 3_1:-88073321 | Msa0384770:CDS |
| ACATAATAATAATCAGACAT+TGG | 0.582601 | 3_1:-88072365 | Msa0384770:CDS |
| AATGCTTGTCGTCTTCCAAA+GGG | 0.582756 | 3_1:-88074239 | Msa0384770:CDS |
| ATTGAAAAGTGTCGAATGCA+TGG | 0.591816 | 3_1:-88074192 | Msa0384770:CDS |
| TTGAGAAACTGTGAAAGCGA+TGG | 0.592333 | 3_1:-88072421 | Msa0384770:CDS |
| GGTAACTTTACAACTGTGGA+TGG | 0.593227 | 3_1:-88072478 | Msa0384770:CDS |
| AACGTACAAAATATACAGAT+AGG | 0.594200 | 3_1:-88072091 | Msa0384770:three_prime_UTR |
| GTCTATGCAAATAACTTCGG+GGG | 0.594987 | 3_1:-88073913 | Msa0384770:CDS |
| CCACCTTATCATTGGAAGAA+CGG | 0.601521 | 3_1:+88075671 | None:intergenic |
| CAATACCAGTATAATGACAC+CGG | 0.603044 | 3_1:-88074278 | Msa0384770:CDS |
| TCAATATCTTAAGGCTACAC+AGG | 0.606571 | 3_1:-88074051 | Msa0384770:CDS |
| GATTATCCAATCCAATGTTG+CGG | 0.607575 | 3_1:+88073967 | None:intergenic |
| TTTACAACTGTGGATGGTGG+TGG | 0.611372 | 3_1:-88072472 | Msa0384770:CDS |
| GAAAATTGCATGGTAACCAA+AGG | 0.613715 | 3_1:-88072570 | Msa0384770:CDS |
| TCTTCCAATGATAAGGTGGT+CGG | 0.614462 | 3_1:-88075667 | Msa0384770:five_prime_UTR |
| GGTTGATACCAGTTACCCCA+AGG | 0.615136 | 3_1:-88073010 | Msa0384770:intron |
| AACTTTACAACTGTGGATGG+TGG | 0.616544 | 3_1:-88072475 | Msa0384770:CDS |
| CTAGGCAAACTGGTTTGACA+AGG | 0.616619 | 3_1:-88072966 | Msa0384770:CDS |
| GCTGAGGATATCTCACAAGA+AGG | 0.617588 | 3_1:+88073867 | None:intergenic |
| GATTCATTGTAGTAATTGTG+AGG | 0.618741 | 3_1:+88074482 | None:intergenic |
| AGGCAGTGATCTGAGGAGTG+AGG | 0.618773 | 3_1:+88074113 | None:intergenic |
| TGGTCCACGTACCGGAGACG+AGG | 0.620141 | 3_1:+88073317 | None:intergenic |
| ATCCTGCAGGCAGTGATCTG+AGG | 0.622811 | 3_1:+88074106 | None:intergenic |
| TGTGCGTCTTTGGAAACCAA+TGG | 0.624209 | 3_1:-88072812 | Msa0384770:CDS |
| TAGTAATTGTGAGGTAACAA+AGG | 0.627033 | 3_1:+88074491 | None:intergenic |
| TGTGGTGTCATCTTTGGACA+TGG | 0.628842 | 3_1:-88073477 | Msa0384770:CDS |
| CCGTTCTTCCAATGATAAGG+TGG | 0.629055 | 3_1:-88075671 | Msa0384770:five_prime_UTR |
| GTTGGGTAACTTTACAACTG+TGG | 0.629995 | 3_1:-88072482 | Msa0384770:CDS |
| TATGGTTACCTCATCCAACA+TGG | 0.631595 | 3_1:+88073803 | None:intergenic |
| TGTGGAAATGGAAAATTGCA+TGG | 0.634656 | 3_1:-88072580 | Msa0384770:CDS |
| TTGTGAAGAGACCAGAAGTG+AGG | 0.658155 | 3_1:-88074613 | Msa0384770:five_prime_UTR |
| ATGCAAGAGAGACATTGTGA+TGG | 0.664466 | 3_1:+88072449 | None:intergenic |
| TATACTGGTATTGAAATGGA+GGG | 0.666797 | 3_1:+88074288 | None:intergenic |
| GTGAGGTAACAAAGGACTCG+AGG | 0.675570 | 3_1:+88074499 | None:intergenic |
| CTGCCATCGAATGCAAATTG+TGG | 0.686632 | 3_1:-88073495 | Msa0384770:CDS |
| ATGGAAAGCATGTCTTCCGG+AGG | 0.687343 | 3_1:-88074173 | Msa0384770:CDS |
| TCTATGCAAATAACTTCGGG+GGG | 0.707179 | 3_1:-88073912 | Msa0384770:CDS |
| GTTAATGTCCGAAAGCAACG+TGG | 0.708048 | 3_1:-88074011 | Msa0384770:CDS |
| AGTCTATGCAAATAACTTCG+GGG | 0.713697 | 3_1:-88073914 | Msa0384770:CDS |
| AGTGATTCAAAGGAACCTTG+GGG | 0.732244 | 3_1:-88073354 | Msa0384770:CDS |
| CAAGCATGGAGACCTCAGAG+AGG | 0.733220 | 3_1:-88073248 | Msa0384770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAATGAAAAATATCAT+TGG | + | chr3_1:88075427-88075446 | None:intergenic | 10.0% |
| !!! | TATTTTTCATTTTTTACTAA+AGG | - | chr3_1:88075431-88075450 | Msa0384770:intron | 10.0% |
| !! | AGGAGTTAATATTATTTAAT+TGG | - | chr3_1:88071952-88071971 | Msa0384770:three_prime_UTR | 15.0% |
| !! | GTTAATATTATTTAATTGGT+TGG | - | chr3_1:88071956-88071975 | Msa0384770:three_prime_UTR | 15.0% |
| !!! | TCATTACAATCTTTTTTAAA+AGG | + | chr3_1:88072228-88072247 | None:intergenic | 15.0% |
| !! | GCATAATTTATTTATATCAT+GGG | + | chr3_1:88072715-88072734 | None:intergenic | 15.0% |
| !! | AGCATAATTTATTTATATCA+TGG | + | chr3_1:88072716-88072735 | None:intergenic | 15.0% |
| !! | AATTTCAACTATAAAAAACA+AGG | + | chr3_1:88072742-88072761 | None:intergenic | 15.0% |
| !!! | ATTAGTTTATAGATTATATC+AGG | + | chr3_1:88072819-88072838 | None:intergenic | 15.0% |
| !! | TTATTATGGAATACAAAATA+CGG | + | chr3_1:88072902-88072921 | None:intergenic | 15.0% |
| !! | ATACAAATTAAATCCATAAA+AGG | + | chr3_1:88073895-88073914 | None:intergenic | 15.0% |
| !! | TATTATCATATAACTTCTAT+TGG | - | chr3_1:88073977-88073996 | Msa0384770:CDS | 15.0% |
| !!! | ATATTTTCAATTAGTTGTAA+TGG | - | chr3_1:88074538-88074557 | Msa0384770:CDS | 15.0% |
| !! | TCATGAGATTAATAATAAAT+TGG | - | chr3_1:88074954-88074973 | Msa0384770:intron | 15.0% |
| !!! | ATTATTATGTCTTTTATGAA+TGG | + | chr3_1:88075277-88075296 | None:intergenic | 15.0% |
| !! | ATAATAATATTACAGATGAT+TGG | - | chr3_1:88075619-88075638 | Msa0384770:intron | 15.0% |
| !!! | CAATTTTTTGTAAAAGAATA+AGG | - | chr3_1:88075660-88075679 | Msa0384770:five_prime_UTR | 15.0% |
| !!! | GTAAAAAATTTGCTAAAACA+GGG | + | chr3_1:88072526-88072545 | None:intergenic | 20.0% |
| !!! | TGTAAAAAATTTGCTAAAAC+AGG | + | chr3_1:88072527-88072546 | None:intergenic | 20.0% |
| !!! | TTTTATAGTTGAAATTACAC+TGG | - | chr3_1:88072746-88072765 | Msa0384770:CDS | 20.0% |
| !!! | TAATGCTTTCTTTATGTTTT+TGG | - | chr3_1:88072835-88072854 | Msa0384770:CDS | 20.0% |
| !! | AAAGCACATTATGATTATTA+TGG | + | chr3_1:88072916-88072935 | None:intergenic | 20.0% |
| !! | AGTGTAAAAACTTTATCATA+AGG | - | chr3_1:88073931-88073950 | Msa0384770:CDS | 20.0% |
| !! | GTATTATAAAGTAACACATA+CGG | + | chr3_1:88074488-88074507 | None:intergenic | 20.0% |
| !! | GAAAATATAAAATTGAGTGA+AGG | + | chr3_1:88074526-88074545 | None:intergenic | 20.0% |
| !! | TTCAACTTTCATTTCATAAT+TGG | - | chr3_1:88074621-88074640 | Msa0384770:five_prime_UTR | 20.0% |
| !! | TCTTTAATGAGACATTTATA+TGG | - | chr3_1:88074780-88074799 | Msa0384770:intron | 20.0% |
| !! | ACATATGATTTAATAGAGTT+GGG | - | chr3_1:88075153-88075172 | Msa0384770:intron | 20.0% |
| !! | ACATAATAATAATCAGACAT+TGG | - | chr3_1:88075287-88075306 | Msa0384770:intron | 20.0% |
| !! | AATTAAAAAACAACAGCATA+TGG | + | chr3_1:88075489-88075508 | None:intergenic | 20.0% |
| ! | AATTTATTTGAATGTTGCCA+AGG | - | chr3_1:88072376-88072395 | Msa0384770:CDS | 25.0% |
| ! | ACTATAAATCACATTTAGAG+AGG | - | chr3_1:88072562-88072581 | Msa0384770:CDS | 25.0% |
| ! | CTATAAATCACATTTAGAGA+GGG | - | chr3_1:88072563-88072582 | Msa0384770:CDS | 25.0% |
| ! | GTTATCATTTATTCAAATCC+GGG | + | chr3_1:88072678-88072697 | None:intergenic | 25.0% |
| ! | GGTTATCATTTATTCAAATC+CGG | + | chr3_1:88072679-88072698 | None:intergenic | 25.0% |
| ! | TGAATAAATGATAACCAAAC+AGG | - | chr3_1:88072683-88072702 | Msa0384770:CDS | 25.0% |
| ! | GAATAAATGATAACCAAACA+GGG | - | chr3_1:88072684-88072703 | Msa0384770:CDS | 25.0% |
| !! | TCATTATACTGGTATTGAAA+TGG | + | chr3_1:88073371-88073390 | None:intergenic | 25.0% |
| ! | ATTTCATGACATTACCAAAA+GGG | - | chr3_1:88073502-88073521 | Msa0384770:CDS | 25.0% |
| ! | AGATGCAATGCTAAATAATA+TGG | + | chr3_1:88073870-88073889 | None:intergenic | 25.0% |
| !!! | AAGTATTGAAACAGAGTTTT+CGG | + | chr3_1:88074435-88074454 | None:intergenic | 25.0% |
| !! | ATTATTTTCTCTGAATCCTT+GGG | + | chr3_1:88074661-88074680 | None:intergenic | 25.0% |
| ! | AATGAGACATTTATATGGTA+TGG | - | chr3_1:88074785-88074804 | Msa0384770:intron | 25.0% |
| ! | TTGTATATTTCTTCAACCAT+TGG | + | chr3_1:88074859-88074878 | None:intergenic | 25.0% |
| ! | GAAATATACAAAGAAGAGTT+TGG | - | chr3_1:88074868-88074887 | Msa0384770:intron | 25.0% |
| ! | GAAAAAAATGTGATAGATTG+TGG | - | chr3_1:88075054-88075073 | Msa0384770:intron | 25.0% |
| ! | CAACTCTATTAAATCATATG+TGG | + | chr3_1:88075154-88075173 | None:intergenic | 25.0% |
| ! | CACATATGATTTAATAGAGT+TGG | - | chr3_1:88075152-88075171 | Msa0384770:intron | 25.0% |
| !!! | ATCACTTTTATCAACAATGA+GGG | + | chr3_1:88075531-88075550 | None:intergenic | 25.0% |
| ! | AACGTACAAAATATACAGAT+AGG | - | chr3_1:88075561-88075580 | Msa0384770:intron | 25.0% |
| TTATGTATCCAGTTTGAAGA+AGG | + | chr3_1:88072087-88072106 | None:intergenic | 30.0% | |
| CATGTTCATTCATAATCATG+AGG | - | chr3_1:88072169-88072188 | Msa0384770:three_prime_UTR | 30.0% | |
| TGTATGTATGTAATGAGTGT+TGG | - | chr3_1:88072448-88072467 | Msa0384770:CDS | 30.0% | |
| TCTCAACAATATCAAAAACC+CGG | - | chr3_1:88072657-88072676 | Msa0384770:CDS | 30.0% | |
| !! | ATACAAAATACGGTTTTTGG+AGG | + | chr3_1:88072892-88072911 | None:intergenic | 30.0% |
| ! | GGAATACAAAATACGGTTTT+TGG | + | chr3_1:88072895-88072914 | None:intergenic | 30.0% |
| !!! | ACTTTTTCACACAATTGTCT+TGG | + | chr3_1:88073000-88073019 | None:intergenic | 30.0% |
| TAGTAATTGTGAGGTAACAA+AGG | + | chr3_1:88073164-88073183 | None:intergenic | 30.0% | |
| GATTCATTGTAGTAATTGTG+AGG | + | chr3_1:88073173-88073192 | None:intergenic | 30.0% | |
| ! | TATACTGGTATTGAAATGGA+GGG | + | chr3_1:88073367-88073386 | None:intergenic | 30.0% |
| ! | TTATACTGGTATTGAAATGG+AGG | + | chr3_1:88073368-88073387 | None:intergenic | 30.0% |
| TTAGATATAGTAGTTCCCTT+TGG | + | chr3_1:88073431-88073450 | None:intergenic | 30.0% | |
| GATTTCATGACATTACCAAA+AGG | - | chr3_1:88073501-88073520 | Msa0384770:CDS | 30.0% | |
| TTGAGAGTTTAGGAAAATGT+TGG | + | chr3_1:88073585-88073604 | None:intergenic | 30.0% | |
| CCTTAAGATATTGAGAGTTT+AGG | + | chr3_1:88073595-88073614 | None:intergenic | 30.0% | |
| CCTAAACTCTCAATATCTTA+AGG | - | chr3_1:88073592-88073611 | Msa0384770:intron | 30.0% | |
| ! | AATTTTCCATCACTATCGTT+GGG | + | chr3_1:88073710-88073729 | None:intergenic | 30.0% |
| ! | AAATTTTCCATCACTATCGT+TGG | + | chr3_1:88073711-88073730 | None:intergenic | 30.0% |
| TCAGTCTATGCAAATAACTT+CGG | - | chr3_1:88073736-88073755 | Msa0384770:intron | 30.0% | |
| GGATTGGAATTAGAATCATT+AGG | + | chr3_1:88073767-88073786 | None:intergenic | 30.0% | |
| GAATAATTGTCACACACTAT+CGG | + | chr3_1:88074027-88074046 | None:intergenic | 30.0% | |
| ! | CTCTTCTTTTATTCCATAGT+TGG | - | chr3_1:88074046-88074065 | Msa0384770:CDS | 30.0% |
| !! | AGTATTGAAACAGAGTTTTC+GGG | + | chr3_1:88074434-88074453 | None:intergenic | 30.0% |
| GTGAAGGATTAGAATTTAGA+GGG | + | chr3_1:88074510-88074529 | None:intergenic | 30.0% | |
| AGTGAAGGATTAGAATTTAG+AGG | + | chr3_1:88074511-88074530 | None:intergenic | 30.0% | |
| ! | TTATTTTCTCTGAATCCTTG+GGG | + | chr3_1:88074660-88074679 | None:intergenic | 30.0% |
| ! | CATTATTTTCTCTGAATCCT+TGG | + | chr3_1:88074662-88074681 | None:intergenic | 30.0% |
| CATTTATATGGTATGGTATC+AGG | - | chr3_1:88074792-88074811 | Msa0384770:intron | 30.0% | |
| AATGTGATAGATTGTGGAAA+TGG | - | chr3_1:88075060-88075079 | Msa0384770:intron | 30.0% | |
| !! | AAAGGTATCTTATCTCTGAA+AGG | - | chr3_1:88075449-88075468 | Msa0384770:intron | 30.0% |
| !! | CATCACTTTTATCAACAATG+AGG | + | chr3_1:88075532-88075551 | None:intergenic | 30.0% |
| !!! | ATTGGTTCTATTTTATCTGC+AGG | - | chr3_1:88075637-88075656 | Msa0384770:five_prime_UTR | 30.0% |
| ACATATACTCTCTCTGTTGT+TGG | - | chr3_1:88072033-88072052 | Msa0384770:three_prime_UTR | 35.0% | |
| GTTCATTCATAATCATGAGG+TGG | - | chr3_1:88072172-88072191 | Msa0384770:three_prime_UTR | 35.0% | |
| TTATTGATGTGCGTGATAGA+AGG | - | chr3_1:88072256-88072275 | Msa0384770:exon | 35.0% | |
| TGTACTATTCCTGATTGATC+AGG | - | chr3_1:88072496-88072515 | Msa0384770:CDS | 35.0% | |
| GTACTATTCCTGATTGATCA+GGG | - | chr3_1:88072497-88072516 | Msa0384770:CDS | 35.0% | |
| GATATTGTTGAGACAGTGAT+GGG | + | chr3_1:88072650-88072669 | None:intergenic | 35.0% | |
| TGATATTGTTGAGACAGTGA+TGG | + | chr3_1:88072651-88072670 | None:intergenic | 35.0% | |
| GCTAGGCTAAAAAATATGCA+TGG | + | chr3_1:88072784-88072803 | None:intergenic | 35.0% | |
| !! | AAAATACGGTTTTTGGAGGT+GGG | + | chr3_1:88072888-88072907 | None:intergenic | 35.0% |
| ACCAAGTTTAACACACCTAT+AGG | - | chr3_1:88073212-88073231 | Msa0384770:CDS | 35.0% | |
| CAAGAGTTATCTCTTAGTCT+CGG | - | chr3_1:88073314-88073333 | Msa0384770:CDS | 35.0% | |
| AAGAGTTATCTCTTAGTCTC+GGG | - | chr3_1:88073315-88073334 | Msa0384770:CDS | 35.0% | |
| CAATACCAGTATAATGACAC+CGG | - | chr3_1:88073374-88073393 | Msa0384770:CDS | 35.0% | |
| !! | ATTGAAAAGTGTCGAATGCA+TGG | - | chr3_1:88073460-88073479 | Msa0384770:CDS | 35.0% |
| TCAATATCTTAAGGCTACAC+AGG | - | chr3_1:88073601-88073620 | Msa0384770:intron | 35.0% | |
| CAAGAAAAAATCCGCAACAT+TGG | - | chr3_1:88073674-88073693 | Msa0384770:intron | 35.0% | |
| AAAAATCCGCAACATTGGAT+TGG | - | chr3_1:88073679-88073698 | Msa0384770:intron | 35.0% | |
| GATTATCCAATCCAATGTTG+CGG | + | chr3_1:88073688-88073707 | None:intergenic | 35.0% | |
| CAGTCTATGCAAATAACTTC+GGG | - | chr3_1:88073737-88073756 | Msa0384770:intron | 35.0% | |
| AGTCTATGCAAATAACTTCG+GGG | - | chr3_1:88073738-88073757 | Msa0384770:intron | 35.0% | |
| ATCCAACAAGTTCTGTCTTT+CGG | + | chr3_1:88073810-88073829 | None:intergenic | 35.0% | |
| ! | GCATTGCATCTTTCCTTTTA+TGG | - | chr3_1:88073879-88073898 | Msa0384770:CDS | 35.0% |
| GCTGTCATAATAACCAACTA+TGG | + | chr3_1:88074062-88074081 | None:intergenic | 35.0% | |
| TTATTATGACAGCGATGGTT+TGG | - | chr3_1:88074069-88074088 | Msa0384770:CDS | 35.0% | |
| CTGTAATCCTTTCTTTGTAC+TGG | - | chr3_1:88074105-88074124 | Msa0384770:CDS | 35.0% | |
| ACCAAGTTCAAGTGATTCAA+AGG | - | chr3_1:88074288-88074307 | Msa0384770:CDS | 35.0% | |
| TCCTTTGAATCACTTGAACT+TGG | + | chr3_1:88074292-88074311 | None:intergenic | 35.0% | |
| AAGTGATTCAAAGGAACCTT+GGG | - | chr3_1:88074297-88074316 | Msa0384770:CDS | 35.0% | |
| CAGAGAAAATAATGCTAGCT+AGG | - | chr3_1:88074668-88074687 | Msa0384770:five_prime_UTR | 35.0% | |
| TTATATGGTATGGTATCAGG+TGG | - | chr3_1:88074795-88074814 | Msa0384770:intron | 35.0% | |
| TCATCTGAAAATACACTCCA+AGG | - | chr3_1:88074916-88074935 | Msa0384770:intron | 35.0% | |
| CTCCAAGGTAAAAGAGATTA+TGG | - | chr3_1:88074931-88074950 | Msa0384770:intron | 35.0% | |
| ! | GACCATAATCTCTTTTACCT+TGG | + | chr3_1:88074936-88074955 | None:intergenic | 35.0% |
| TGTGGAAATGGAAAATTGCA+TGG | - | chr3_1:88075072-88075091 | Msa0384770:intron | 35.0% | |
| GAAAATTGCATGGTAACCAA+AGG | - | chr3_1:88075082-88075101 | Msa0384770:intron | 35.0% | |
| !!! | CATTTTTTATGCTGAGCCTT+TGG | + | chr3_1:88075101-88075120 | None:intergenic | 35.0% |
| CAAAGGCTCAGCATAAAAAA+TGG | - | chr3_1:88075099-88075118 | Msa0384770:intron | 35.0% | |
| GACTATCATTTCACAGATTC+AGG | - | chr3_1:88075339-88075358 | Msa0384770:intron | 35.0% | |
| AAACAACAGCATATGGTTTG+AGG | + | chr3_1:88075482-88075501 | None:intergenic | 35.0% | |
| GTACCGTTCTTCCAATGATA+AGG | - | chr3_1:88071978-88071997 | Msa0384770:three_prime_UTR | 40.0% | |
| CCACCTTATCATTGGAAGAA+CGG | + | chr3_1:88071984-88072003 | None:intergenic | 40.0% | |
| TCTTCCAATGATAAGGTGGT+CGG | - | chr3_1:88071985-88072004 | Msa0384770:three_prime_UTR | 40.0% | |
| AAGAAGGAAGGTGAGACAAA+TGG | + | chr3_1:88072071-88072090 | None:intergenic | 40.0% | |
| GTATCCAGTTTGAAGAAGGA+AGG | + | chr3_1:88072083-88072102 | None:intergenic | 40.0% | |
| AGTCATGAGTGATGTGATGA+TGG | - | chr3_1:88072305-88072324 | Msa0384770:CDS | 40.0% | |
| !! | GAGTGATGTGATGATGGTAT+TGG | - | chr3_1:88072311-88072330 | Msa0384770:CDS | 40.0% |
| !! | GTGATGATGGTATTGGTGAA+TGG | - | chr3_1:88072318-88072337 | Msa0384770:CDS | 40.0% |
| GAAACTATGTTCTGCACAAG+TGG | - | chr3_1:88072585-88072604 | Msa0384770:CDS | 40.0% | |
| !!! | AAGTGGAGTTGATGGTTTTC+TGG | - | chr3_1:88072602-88072621 | Msa0384770:CDS | 40.0% |
| TCAGGCTATTAGCATATGCT+AGG | + | chr3_1:88072801-88072820 | None:intergenic | 40.0% | |
| !! | AAATACGGTTTTTGGAGGTG+GGG | + | chr3_1:88072887-88072906 | None:intergenic | 40.0% |
| !! | CAAAATACGGTTTTTGGAGG+TGG | + | chr3_1:88072889-88072908 | None:intergenic | 40.0% |
| AGACAAGATCAGCACTTGTT+GGG | + | chr3_1:88073073-88073092 | None:intergenic | 40.0% | |
| AAGACAAGATCAGCACTTGT+TGG | + | chr3_1:88073074-88073093 | None:intergenic | 40.0% | |
| ATTCTCTTCAGGGTCCTATA+TGG | - | chr3_1:88073121-88073140 | Msa0384770:intron | 40.0% | |
| CGAGGTGAACATATCCATAT+AGG | + | chr3_1:88073138-88073157 | None:intergenic | 40.0% | |
| GCCTATAGGTGTGTTAAACT+TGG | + | chr3_1:88073216-88073235 | None:intergenic | 40.0% | |
| ! | AGCATTGGAATGCTCATCAA+TGG | + | chr3_1:88073258-88073277 | None:intergenic | 40.0% |
| TACATGAGAGCTGTAAGCAT+TGG | + | chr3_1:88073273-88073292 | None:intergenic | 40.0% | |
| CGAGACTAAGAGATAACTCT+TGG | + | chr3_1:88073316-88073335 | None:intergenic | 40.0% | |
| ATTCATCAGCGATACGAAAC+CGG | + | chr3_1:88073396-88073415 | None:intergenic | 40.0% | |
| AATGCTTGTCGTCTTCCAAA+GGG | - | chr3_1:88073413-88073432 | Msa0384770:CDS | 40.0% | |
| GGTAATGTCATGAAATCCTC+CGG | + | chr3_1:88073498-88073517 | None:intergenic | 40.0% | |
| ! | GTTACGAAAACACTCCCTTT+TGG | + | chr3_1:88073519-88073538 | None:intergenic | 40.0% |
| AAAAACCTTGTGAATCCTGC+AGG | + | chr3_1:88073562-88073581 | None:intergenic | 40.0% | |
| ! | TTTCCATTCCACGTTGCTTT+CGG | + | chr3_1:88073652-88073671 | None:intergenic | 40.0% |
| GATAATCCCAACGATAGTGA+TGG | - | chr3_1:88073701-88073720 | Msa0384770:intron | 40.0% | |
| GTCTATGCAAATAACTTCGG+GGG | - | chr3_1:88073739-88073758 | Msa0384770:intron | 40.0% | |
| TCTATGCAAATAACTTCGGG+GGG | - | chr3_1:88073740-88073759 | Msa0384770:intron | 40.0% | |
| GGATATCTCACAAGAAGGAT+TGG | + | chr3_1:88073783-88073802 | None:intergenic | 40.0% | |
| ! | GACAAAGCTTTTGTCCATGT+TGG | - | chr3_1:88073835-88073854 | Msa0384770:CDS | 40.0% |
| TATGGTTACCTCATCCAACA+TGG | + | chr3_1:88073852-88073871 | None:intergenic | 40.0% | |
| GTTGGTTATTATGACAGCGA+TGG | - | chr3_1:88074064-88074083 | Msa0384770:CDS | 40.0% | |
| CCTACAACCAGTACAAAGAA+AGG | + | chr3_1:88074115-88074134 | None:intergenic | 40.0% | |
| !! | CCTTTCTTTGTACTGGTTGT+AGG | - | chr3_1:88074112-88074131 | Msa0384770:CDS | 40.0% |
| ACACCACAATTTGCATTCGA+TGG | + | chr3_1:88074163-88074182 | None:intergenic | 40.0% | |
| !! | GCAAATTGTGGTGTCATCTT+TGG | - | chr3_1:88074169-88074188 | Msa0384770:CDS | 40.0% |
| CGCAAAGCAAGTGTAGTATA+TGG | + | chr3_1:88074224-88074243 | None:intergenic | 40.0% | |
| CAAGTGATTCAAAGGAACCT+TGG | - | chr3_1:88074296-88074315 | Msa0384770:CDS | 40.0% | |
| AGTGATTCAAAGGAACCTTG+GGG | - | chr3_1:88074298-88074317 | Msa0384770:CDS | 40.0% | |
| !! | TTCAGCATCTTGGTGTTATG+CGG | - | chr3_1:88074381-88074400 | Msa0384770:CDS | 40.0% |
| CTGTTTCAATACTTCGTGCT+TGG | - | chr3_1:88074441-88074460 | Msa0384770:CDS | 40.0% | |
| ATAATGCTAGCTAGGCAAAC+TGG | - | chr3_1:88074676-88074695 | Msa0384770:five_prime_UTR | 40.0% | |
| !! | AACTGGTTTGACAAGGAATC+AGG | - | chr3_1:88074693-88074712 | Msa0384770:five_prime_UTR | 40.0% |
| TATGGTATCAGGTGGCAAAT+TGG | - | chr3_1:88074803-88074822 | Msa0384770:intron | 40.0% | |
| ! | TTTTTCTACACGTTCTCTCG+TGG | + | chr3_1:88075040-88075059 | None:intergenic | 40.0% |
| GTTGGGTAACTTTACAACTG+TGG | - | chr3_1:88075170-88075189 | Msa0384770:intron | 40.0% | |
| GGTAACTTTACAACTGTGGA+TGG | - | chr3_1:88075174-88075193 | Msa0384770:intron | 40.0% | |
| AACTTTACAACTGTGGATGG+TGG | - | chr3_1:88075177-88075196 | Msa0384770:intron | 40.0% | |
| ATGCAAGAGAGACATTGTGA+TGG | + | chr3_1:88075206-88075225 | None:intergenic | 40.0% | |
| TCACAATGTCTCTCTTGCAT+TGG | - | chr3_1:88075206-88075225 | Msa0384770:intron | 40.0% | |
| TTGAGAAACTGTGAAAGCGA+TGG | - | chr3_1:88075231-88075250 | Msa0384770:intron | 40.0% | |
| GGAAAGCAACAACACATGTT+TGG | - | chr3_1:88075360-88075379 | Msa0384770:intron | 40.0% | |
| CCGTTCTTCCAATGATAAGG+TGG | - | chr3_1:88071981-88072000 | Msa0384770:three_prime_UTR | 45.0% | |
| AAGACCGACCACCTTATCAT+TGG | + | chr3_1:88071992-88072011 | None:intergenic | 45.0% | |
| CTCACCTTCCTTCTTCAAAC+TGG | - | chr3_1:88072076-88072095 | Msa0384770:three_prime_UTR | 45.0% | |
| CAGAGCAAGCAGAGTTTCAA+TGG | + | chr3_1:88072114-88072133 | None:intergenic | 45.0% | |
| CATTGAAACTCTGCTTGCTC+TGG | - | chr3_1:88072112-88072131 | Msa0384770:three_prime_UTR | 45.0% | |
| TTGCCAAGGTCACTATGTGT+GGG | - | chr3_1:88072390-88072409 | Msa0384770:CDS | 45.0% | |
| TTCTGCACAAGTGGAGTTGA+TGG | - | chr3_1:88072594-88072613 | Msa0384770:CDS | 45.0% | |
| !! | AATACGGTTTTTGGAGGTGG+GGG | + | chr3_1:88072886-88072905 | None:intergenic | 45.0% |
| TTGTGAAGAGACCAGAAGTG+AGG | - | chr3_1:88073039-88073058 | Msa0384770:intron | 45.0% | |
| CCTGAAGAGAATGCTTGGTT+GGG | + | chr3_1:88073113-88073132 | None:intergenic | 45.0% | |
| CCAACCAAGCATTCTCTTCA+GGG | - | chr3_1:88073111-88073130 | Msa0384770:intron | 45.0% | |
| ATAGTCACTGTGTCGCCTAT+AGG | + | chr3_1:88073230-88073249 | None:intergenic | 45.0% | |
| !! | CGAAACCGGTGTCATTATAC+TGG | + | chr3_1:88073382-88073401 | None:intergenic | 45.0% |
| GAATGCTTGTCGTCTTCCAA+AGG | - | chr3_1:88073412-88073431 | Msa0384770:CDS | 45.0% | |
| ! | TGCATGGAAAGCATGTCTTC+CGG | - | chr3_1:88073476-88073495 | Msa0384770:CDS | 45.0% |
| GTTAATGTCCGAAAGCAACG+TGG | - | chr3_1:88073641-88073660 | Msa0384770:intron | 45.0% | |
| GCTGAGGATATCTCACAAGA+AGG | + | chr3_1:88073788-88073807 | None:intergenic | 45.0% | |
| AGCCGAAAGACAGAACTTGT+TGG | - | chr3_1:88073805-88073824 | Msa0384770:intron | 45.0% | |
| ! | GCTTTTGTCCATGTTGGATG+AGG | - | chr3_1:88073841-88073860 | Msa0384770:CDS | 45.0% |
| CTGCCATCGAATGCAAATTG+TGG | - | chr3_1:88074157-88074176 | Msa0384770:CDS | 45.0% | |
| !! | TGTGGTGTCATCTTTGGACA+TGG | - | chr3_1:88074175-88074194 | Msa0384770:CDS | 45.0% |
| TCATCTTTGGACATGGTTGC+TGG | - | chr3_1:88074182-88074201 | Msa0384770:CDS | 45.0% | |
| CATCTTTGGACATGGTTGCT+GGG | - | chr3_1:88074183-88074202 | Msa0384770:CDS | 45.0% | |
| ATCTTTGGACATGGTTGCTG+GGG | - | chr3_1:88074184-88074203 | Msa0384770:CDS | 45.0% | |
| GTATTCCTTCTTGTTCCCCA+AGG | + | chr3_1:88074316-88074335 | None:intergenic | 45.0% | |
| AAGAAGGAATACCTCGTCTC+CGG | - | chr3_1:88074324-88074343 | Msa0384770:CDS | 45.0% | |
| ! | CCTTTTGTTGCCTAAGCTGT+TGG | + | chr3_1:88074358-88074377 | None:intergenic | 45.0% |
| CCAACAGCTTAGGCAACAAA+AGG | - | chr3_1:88074355-88074374 | Msa0384770:CDS | 45.0% | |
| !! | CAAAAGGCACTTCAGCATCT+TGG | - | chr3_1:88074371-88074390 | Msa0384770:CDS | 45.0% |
| !! | CTAGGCAAACTGGTTTGACA+AGG | - | chr3_1:88074686-88074705 | Msa0384770:five_prime_UTR | 45.0% |
| ! | TGTGCGTCTTTGGAAACCAA+TGG | - | chr3_1:88074840-88074859 | Msa0384770:intron | 45.0% |
| ! | TTTACAACTGTGGATGGTGG+TGG | - | chr3_1:88075180-88075199 | Msa0384770:intron | 45.0% |
| GTTGCCAAGGTCACTATGTG+TGG | - | chr3_1:88072389-88072408 | Msa0384770:CDS | 50.0% | |
| TGCCAAGGTCACTATGTGTG+GGG | - | chr3_1:88072391-88072410 | Msa0384770:CDS | 50.0% | |
| CAGGGAATCCCTGATCAATC+AGG | + | chr3_1:88072508-88072527 | None:intergenic | 50.0% | |
| ! | ATCATGGGTTGTGCCCTGTT+TGG | + | chr3_1:88072700-88072719 | None:intergenic | 50.0% |
| GGGAACAAGAACCTCACTTC+TGG | + | chr3_1:88073053-88073072 | None:intergenic | 50.0% | |
| CCCAACCAAGCATTCTCTTC+AGG | - | chr3_1:88073110-88073129 | Msa0384770:intron | 50.0% | |
| CCCTGAAGAGAATGCTTGGT+TGG | + | chr3_1:88073114-88073133 | None:intergenic | 50.0% | |
| AGGACCCTGAAGAGAATGCT+TGG | + | chr3_1:88073118-88073137 | None:intergenic | 50.0% | |
| GTGAGGTAACAAAGGACTCG+AGG | + | chr3_1:88073156-88073175 | None:intergenic | 50.0% | |
| GGAGGGACAGATGCATTAGA+AGG | + | chr3_1:88073350-88073369 | None:intergenic | 50.0% | |
| ! | ATGGAAAGCATGTCTTCCGG+AGG | - | chr3_1:88073479-88073498 | Msa0384770:CDS | 50.0% |
| TGTCCGAAAGCAACGTGGAA+TGG | - | chr3_1:88073646-88073665 | Msa0384770:intron | 50.0% | |
| CAAGTTCTGTCTTTCGGCTG+AGG | + | chr3_1:88073804-88073823 | None:intergenic | 50.0% | |
| TCTTTGGACATGGTTGCTGG+GGG | - | chr3_1:88074185-88074204 | Msa0384770:CDS | 50.0% | |
| AGGAACCTTGGGGAACAAGA+AGG | - | chr3_1:88074308-88074327 | Msa0384770:CDS | 50.0% | |
| TAAGCTGTTGGTCCACGTAC+CGG | + | chr3_1:88074346-88074365 | None:intergenic | 50.0% | |
| !! | TTGGTGTTATGCGGCAAGCA+TGG | - | chr3_1:88074390-88074409 | Msa0384770:CDS | 50.0% |
| !! | TTTTCGGGAAGTCCTCTCTG+AGG | + | chr3_1:88074419-88074438 | None:intergenic | 50.0% |
| ! | GGTTGATACCAGTTACCCCA+AGG | - | chr3_1:88074642-88074661 | Msa0384770:five_prime_UTR | 50.0% |
| CTCTGAATCCTTGGGGTAAC+TGG | + | chr3_1:88074653-88074672 | None:intergenic | 50.0% | |
| TTAATGCGCGTGTGCGTCTT+TGG | - | chr3_1:88074830-88074849 | Msa0384770:intron | 50.0% | |
| TACACGTTCTCTCGTGGAAG+AGG | + | chr3_1:88075034-88075053 | None:intergenic | 50.0% | |
| GTCCCCACACATAGTGACCT+TGG | + | chr3_1:88072396-88072415 | None:intergenic | 55.0% | |
| GGCAGTGATCTGAGGAGTGA+GGG | + | chr3_1:88073541-88073560 | None:intergenic | 55.0% | |
| AGGCAGTGATCTGAGGAGTG+AGG | + | chr3_1:88073542-88073561 | None:intergenic | 55.0% | |
| ATCCTGCAGGCAGTGATCTG+AGG | + | chr3_1:88073549-88073568 | None:intergenic | 55.0% | |
| CACTGCCTGCAGGATTCACA+AGG | - | chr3_1:88073554-88073573 | Msa0384770:intron | 55.0% | |
| AATACCTCGTCTCCGGTACG+TGG | - | chr3_1:88074331-88074350 | Msa0384770:CDS | 55.0% | |
| GGTACGTGGACCAACAGCTT+AGG | - | chr3_1:88074345-88074364 | Msa0384770:CDS | 55.0% | |
| CAAGCATGGAGACCTCAGAG+AGG | - | chr3_1:88074404-88074423 | Msa0384770:CDS | 55.0% | |
| CTCCTCAGATCACTGCCTGC+AGG | - | chr3_1:88073544-88073563 | Msa0384770:intron | 60.0% | |
| TTGGACATGGTTGCTGGGGG+TGG | - | chr3_1:88074188-88074207 | Msa0384770:CDS | 60.0% | |
| TGGTCCACGTACCGGAGACG+AGG | + | chr3_1:88074338-88074357 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 88071950 | 88075724 | 88071950 | ID=Msa0384770;Name=Msa0384770 |
| chr3_1 | mRNA | 88071950 | 88075724 | 88071950 | ID=Msa0384770-mRNA-1;Parent=Msa0384770;Name=Msa0384770-mRNA-1;_AED=0.23;_eAED=0.23;_QI=286|1|1|1|0.6|0.5|6|308|591 |
| chr3_1 | exon | 88071950 | 88072860 | 88071950 | ID=Msa0384770-mRNA-1:exon:23686;Parent=Msa0384770-mRNA-1 |
| chr3_1 | exon | 88072960 | 88073020 | 88072960 | ID=Msa0384770-mRNA-1:exon:23685;Parent=Msa0384770-mRNA-1 |
| chr3_1 | exon | 88073188 | 88073540 | 88073188 | ID=Msa0384770-mRNA-1:exon:23684;Parent=Msa0384770-mRNA-1 |
| chr3_1 | exon | 88073812 | 88074715 | 88073812 | ID=Msa0384770-mRNA-1:exon:23683;Parent=Msa0384770-mRNA-1 |
| chr3_1 | exon | 88075541 | 88075576 | 88075541 | ID=Msa0384770-mRNA-1:exon:23682;Parent=Msa0384770-mRNA-1 |
| chr3_1 | exon | 88075620 | 88075724 | 88075620 | ID=Msa0384770-mRNA-1:exon:23681;Parent=Msa0384770-mRNA-1 |
| chr3_1 | five_prime_UTR | 88075620 | 88075724 | 88075620 | ID=Msa0384770-mRNA-1:five_prime_utr;Parent=Msa0384770-mRNA-1 |
| chr3_1 | five_prime_UTR | 88075541 | 88075576 | 88075541 | ID=Msa0384770-mRNA-1:five_prime_utr;Parent=Msa0384770-mRNA-1 |
| chr3_1 | five_prime_UTR | 88074571 | 88074715 | 88074571 | ID=Msa0384770-mRNA-1:five_prime_utr;Parent=Msa0384770-mRNA-1 |
| chr3_1 | CDS | 88073812 | 88074570 | 88073812 | ID=Msa0384770-mRNA-1:cds;Parent=Msa0384770-mRNA-1 |
| chr3_1 | CDS | 88073188 | 88073540 | 88073188 | ID=Msa0384770-mRNA-1:cds;Parent=Msa0384770-mRNA-1 |
| chr3_1 | CDS | 88072960 | 88073020 | 88072960 | ID=Msa0384770-mRNA-1:cds;Parent=Msa0384770-mRNA-1 |
| chr3_1 | CDS | 88072258 | 88072860 | 88072258 | ID=Msa0384770-mRNA-1:cds;Parent=Msa0384770-mRNA-1 |
| chr3_1 | three_prime_UTR | 88071950 | 88072257 | 88071950 | ID=Msa0384770-mRNA-1:three_prime_utr;Parent=Msa0384770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
