AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0384790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0384790 MtrunA17_Chr2g0287651 42.385 696 382 6 89 779 63 744 0.0 575
Msa0384790 MtrunA17_Chr1g0203051 34.672 548 351 3 100 644 78 621 5.45e-112 359
Msa0384790 MtrunA17_Chr1g0202341 32.338 603 380 10 100 691 50 635 1.82e-96 319
Msa0384790 MtrunA17_Chr5g0448761 31.930 570 367 8 105 659 64 627 4.40e-90 305
Msa0384790 MtrunA17_Chr2g0324011 28.859 596 406 6 95 678 4 593 4.78e-83 280
Msa0384790 MtrunA17_Chr2g0296781 28.971 680 432 15 105 760 1 653 2.09e-82 282
Msa0384790 MtrunA17_Chr5g0441581 28.031 635 410 12 105 720 36 642 3.49e-80 275
Msa0384790 MtrunA17_Chr8g0363841 27.301 641 429 11 97 712 9 637 1.89e-79 273
Msa0384790 MtrunA17_Chr1g0198761 30.810 568 366 10 107 656 53 611 2.83e-78 271
Msa0384790 MtrunA17_Chr6g0477261 34.579 428 265 6 241 657 22 445 2.03e-77 266
Msa0384790 MtrunA17_Chr3g0082121 29.605 608 399 12 104 700 46 635 5.09e-77 266
Msa0384790 MtrunA17_Chr1g0203721 27.724 624 430 11 107 720 69 681 2.81e-75 265
Msa0384790 MtrunA17_Chr1g0207551 31.016 561 370 9 105 657 38 589 2.16e-74 261
Msa0384790 MtrunA17_Chr3g0080351 27.885 624 383 13 96 695 71 651 5.12e-71 253
Msa0384790 MtrunA17_Chr6g0458391 27.513 567 367 11 105 657 229 765 4.32e-69 246
Msa0384790 MtrunA17_Chr1g0196541 30.594 572 362 15 105 657 1 556 7.56e-69 244
Msa0384790 MtrunA17_Chr2g0329031 25.879 626 399 13 88 690 1 584 2.23e-67 240
Msa0384790 MtrunA17_Chr3g0118611 29.666 509 326 11 207 705 56 542 1.07e-63 230
Msa0384790 MtrunA17_Chr5g0440451 26.923 624 408 16 105 705 47 645 3.03e-63 231
Msa0384790 MtrunA17_Chr5g0448511 30.479 397 266 5 267 657 5 397 7.86e-63 223
Msa0384790 MtrunA17_Chr5g0431001 31.678 423 263 8 107 508 67 484 2.16e-61 218
Msa0384790 MtrunA17_Chr2g0276841 26.442 624 431 12 107 717 76 684 1.21e-60 220
Msa0384790 MtrunA17_Chr2g0290391 26.215 679 434 17 84 726 35 682 8.01e-60 218
Msa0384790 MtrunA17_Chr2g0291581 27.592 569 374 13 105 657 75 621 4.86e-59 215
Msa0384790 MtrunA17_Chr2g0294841 27.616 583 375 14 107 664 51 611 1.27e-57 212
Msa0384790 MtrunA17_Chr2g0287061 27.228 606 390 14 106 705 188 748 4.33e-57 211
Msa0384790 MtrunA17_Chr2g0291591 29.883 512 327 12 82 576 39 535 6.20e-56 204
Msa0384790 MtrunA17_Chr1g0164591 31.803 305 194 3 188 487 12 307 5.78e-49 177
Msa0384790 MtrunA17_Chr2g0308841 32.627 236 157 1 432 667 4 237 1.66e-37 142
Msa0384790 MtrunA17_Chr7g0258861 30.877 285 178 5 105 378 14 290 5.94e-36 138
Msa0384790 MtrunA17_Chr1g0149131 33.636 110 68 1 379 483 1 110 1.26e-15 74.3
Msa0384790 MtrunA17_Chr8g0340801 33.028 109 71 1 209 317 1 107 2.49e-13 67.4
Msa0384790 MtrunA17_Chr1g0171741 24.645 211 121 5 15 220 77 254 7.61e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0384790 AT4G38180.1 31.135 652 419 14 23 661 4 638 1.73e-88 301
Msa0384790 AT4G15090.1 29.806 671 439 15 53 707 2 656 1.98e-83 288
Msa0384790 AT4G15090.5 29.806 671 439 15 53 707 2 656 1.98e-83 288
Msa0384790 AT4G15090.3 29.806 671 439 15 53 707 2 656 1.98e-83 288
Msa0384790 AT4G15090.2 29.806 671 439 15 53 707 2 656 1.98e-83 288
Msa0384790 AT4G15090.4 29.806 671 439 15 53 707 2 656 1.98e-83 288
Msa0384790 AT3G22170.2 26.017 688 445 13 52 716 30 676 2.69e-71 254
Msa0384790 AT3G22170.1 26.017 688 445 13 52 716 30 676 2.69e-71 254
Msa0384790 AT2G27110.2 25.688 654 419 14 59 699 14 613 5.77e-64 233
Msa0384790 AT2G27110.1 25.688 654 419 14 59 699 14 613 5.77e-64 233
Msa0384790 AT3G06250.2 26.777 605 392 11 105 705 194 751 3.52e-62 226
Msa0384790 AT3G06250.1 26.777 605 392 11 105 705 194 751 3.52e-62 226
Msa0384790 AT3G06250.3 26.777 605 392 11 105 705 194 751 3.52e-62 226
Msa0384790 AT5G28530.1 27.903 577 384 11 107 663 61 625 6.15e-62 224
Msa0384790 AT2G27110.3 30.093 432 282 7 274 699 51 468 4.16e-61 222
Msa0384790 AT1G76320.2 27.257 565 384 12 105 660 1 547 4.45e-61 222
Msa0384790 AT1G76320.3 26.876 573 376 13 105 660 1 547 4.49e-61 221
Msa0384790 AT1G76320.1 27.257 565 384 12 105 660 1 547 5.55e-61 222
Msa0384790 AT1G76320.4 27.257 565 384 12 105 660 1 547 5.55e-61 222
Msa0384790 AT5G28530.3 27.556 577 382 11 107 663 61 621 8.75e-61 221
Msa0384790 AT5G28530.2 27.556 577 382 11 107 663 61 621 8.75e-61 221
Msa0384790 AT1G10240.2 26.614 635 416 13 107 717 54 662 2.62e-60 219
Msa0384790 AT1G10240.1 26.614 635 416 13 107 717 54 662 2.62e-60 219
Msa0384790 AT1G80010.1 28.105 612 395 20 80 666 79 670 3.74e-60 219
Msa0384790 AT4G19990.7 26.797 612 379 14 79 661 6 577 1.23e-59 219
Msa0384790 AT4G19990.6 26.863 577 362 12 106 661 26 563 1.61e-59 219
Msa0384790 AT4G19990.2 26.863 577 362 12 106 661 26 563 1.61e-59 219
Msa0384790 AT4G19990.3 26.863 577 362 12 106 661 26 563 1.88e-59 218
Msa0384790 AT4G19990.4 26.863 577 362 12 106 661 26 563 1.88e-59 218
Msa0384790 AT4G19990.5 26.863 577 362 12 106 661 26 563 2.20e-59 218
Msa0384790 AT4G19990.1 29.323 399 274 4 269 661 110 506 5.99e-59 216
Msa0384790 AT1G52520.1 27.036 577 380 14 105 662 89 643 1.09e-58 215
Msa0384790 AT5G18960.2 26.403 606 396 13 105 705 215 775 6.71e-58 214
Msa0384790 AT5G18960.1 26.403 606 396 13 105 705 215 775 6.71e-58 214
Msa0384790 AT2G32250.7 26.580 617 367 14 105 697 1 555 1.93e-55 206
Msa0384790 AT2G32250.6 26.518 626 373 15 97 697 33 596 2.19e-55 207
Msa0384790 AT2G32250.1 26.518 626 373 15 97 697 33 596 2.19e-55 207
Msa0384790 AT2G32250.3 26.518 626 373 15 97 697 33 596 2.19e-55 207
Msa0384790 AT2G32250.2 26.518 626 373 15 97 697 33 596 2.23e-55 207
Msa0384790 AT2G32250.4 26.518 626 373 15 97 697 33 596 2.23e-55 207
Msa0384790 AT2G32250.8 26.580 617 367 14 105 697 1 555 2.31e-55 206
Msa0384790 AT2G32250.5 26.677 626 372 15 97 697 33 596 2.41e-55 206
Msa0384790 AT4G38170.1 29.330 358 244 5 306 657 45 399 1.07e-53 197
Msa0384790 AT5G28530.4 24.868 567 351 14 107 663 61 562 2.34e-41 162
Msa0384790 AT5G28530.5 24.515 567 349 14 107 663 61 558 3.30e-40 158

Find 169 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATGTTGATTGTGATATT+TGG 0.171428 3_1:-88118648 None:intergenic
CAAAGGTGATGCCTTGTATT+TGG 0.176136 3_1:-88117139 None:intergenic
CTCTTGCAAATCAGACTTTC+AGG 0.192125 3_1:-88117859 None:intergenic
AAAATTGATCCACCATTATT+TGG 0.205525 3_1:-88118885 None:intergenic
CCCATAGTTTCTCAATGTTT+TGG 0.242135 3_1:-88119142 None:intergenic
TCACTCAATTTGCTGTAATT+AGG 0.275503 3_1:-88116560 None:intergenic
CCATCAGTAATCACCGCTTT+TGG 0.302214 3_1:-88117079 None:intergenic
TCCATACTTGTTCTTTCTAT+AGG 0.305560 3_1:-88116918 None:intergenic
AAATGATGATATAAGGGATA+TGG 0.309095 3_1:+88116223 Msa0384790:CDS
TAACACCATACCCAACATTA+TGG 0.313783 3_1:-88118836 None:intergenic
AGGACTTGGGTTTATCAAAA+AGG 0.326599 3_1:+88116676 Msa0384790:CDS
TGATAAACCCAAGTCCTTCA+TGG 0.346028 3_1:-88116670 None:intergenic
ACCTATAGAAAGAACAAGTA+TGG 0.349144 3_1:+88116917 Msa0384790:CDS
ATGTGACAAATGATGATATA+AGG 0.351919 3_1:+88116216 Msa0384790:CDS
ACGACTTTGTTCGTACGATT+TGG 0.356788 3_1:+88116471 Msa0384790:CDS
ACACCAATTCCAGCAAGTTC+TGG 0.360337 3_1:-88118267 None:intergenic
GAGTTTACATTTACAGATGA+TGG 0.367609 3_1:+88116812 Msa0384790:CDS
TAAGAGCGCAAGTGATTATA+AGG 0.371814 3_1:+88118011 Msa0384790:CDS
AGGTTTGACTATGAGTGTTT+TGG 0.377109 3_1:+88116872 Msa0384790:CDS
TTACCCACCTGTTGTTTGAT+AGG 0.378005 3_1:-88117300 None:intergenic
AACAACGATGTTCGTATTGA+TGG 0.384308 3_1:+88116104 Msa0384790:CDS
CACTATGGGCTGCCAAATAA+TGG 0.387380 3_1:+88118873 Msa0384790:CDS
TGTAAGAACATGTCATATCT+TGG 0.387474 3_1:+88116622 Msa0384790:CDS
TGTTCTAATTGTAGAAATCC+TGG 0.392101 3_1:+88118225 Msa0384790:CDS
ATCCATGTTGTCATACTTCA+TGG 0.394339 3_1:-88117830 None:intergenic
ATCATTCGCAACAAATTTGT+TGG 0.403036 3_1:-88118139 None:intergenic
TCTAACACTGCTCTGCATAC+TGG 0.407068 3_1:+88118945 Msa0384790:CDS
ATATAATTTCACGGATCATC+AGG 0.409639 3_1:+88116703 Msa0384790:CDS
TTTGGGCAGATTCTACTAGT+AGG 0.409763 3_1:+88116852 Msa0384790:CDS
GATTATAAGGAGGCTCTAGA+AGG 0.413898 3_1:+88118024 Msa0384790:CDS
GATTCATTATCAGACTCAAT+AGG 0.414121 3_1:-88118321 None:intergenic
GCACTGGTATTACACGTAAG+AGG 0.418801 3_1:+88118529 Msa0384790:CDS
AACAAATACAAGCACTAGAA+AGG 0.422563 3_1:+88118608 Msa0384790:CDS
TGTCCAGAACTTGCTGGAAT+TGG 0.422787 3_1:+88118264 Msa0384790:CDS
TGCTGTAATTAGGCATCAAA+TGG 0.427394 3_1:-88116550 None:intergenic
AAAGTTTAAAGATGTCAAAA+AGG 0.436388 3_1:+88117609 Msa0384790:CDS
AAGGGTGGCCATGAAGGACT+TGG 0.449428 3_1:+88116662 Msa0384790:CDS
TTTGAGTTATTTCCAAGGTA+AGG 0.452831 3_1:+88116763 Msa0384790:CDS
TAAATTTGTTGCGAGTGATA+AGG 0.460501 3_1:+88118116 Msa0384790:CDS
AAATGGACATGACAAGGATA+AGG 0.461918 3_1:+88118089 Msa0384790:CDS
ATACTTGTTCTTTCTATAGG+TGG 0.464692 3_1:-88116915 None:intergenic
GTAAGAACATGTCATATCTT+GGG 0.464989 3_1:+88116623 Msa0384790:CDS
GCGTCAATTAGTATGCAATA+AGG 0.467578 3_1:+88116358 Msa0384790:CDS
TTCGAATGGTTAGCGTAGAT+CGG 0.471186 3_1:-88116418 None:intergenic
CAAGGCATCACCTTTGCGCC+TGG 0.476669 3_1:+88117146 Msa0384790:CDS
AATAGCCGTCATGAGGGAAA+TGG 0.477370 3_1:+88118072 Msa0384790:CDS
CAAGGGAAAGAGAACTTTGA+TGG 0.478759 3_1:+88116176 Msa0384790:CDS
CGGACGTGTCCAGAACTTGC+TGG 0.483560 3_1:+88118258 Msa0384790:CDS
TGCAGAACAATTAGTTCGAA+TGG 0.488516 3_1:-88116432 None:intergenic
ATGTGAAACGTGATTCTAAT+GGG 0.492055 3_1:+88116324 Msa0384790:CDS
AAAGGACTTATATAATTTCA+CGG 0.493961 3_1:+88116694 Msa0384790:CDS
GAAATCCTGGGCACACAATA+CGG 0.497533 3_1:+88118238 Msa0384790:CDS
CACTCTGTAGCAGTGTCAAA+TGG 0.499398 3_1:+88118486 Msa0384790:CDS
CCAAAAGCGGTGATTACTGA+TGG 0.502215 3_1:+88117079 Msa0384790:CDS
AATGGACATGACAAGGATAA+GGG 0.502443 3_1:+88118090 Msa0384790:CDS
AGTGTTAGAATGTGATGAGA+GGG 0.502952 3_1:-88118931 None:intergenic
AACATTTCGATGCAAATGCC+AGG 0.503276 3_1:-88117164 None:intergenic
CCACTGGTTTGAAGTAAGAA+AGG 0.504797 3_1:+88116298 Msa0384790:CDS
AATGGTGTGACCCGTGACTT+TGG 0.505092 3_1:+88118765 Msa0384790:CDS
GCAAGGGTTAAAATACAAGA+TGG 0.508614 3_1:+88116725 Msa0384790:CDS
GTATCACTATATACATCAAA+AGG 0.509968 3_1:-88115957 None:intergenic
GGTCAAAAGGGTGGCCATGA+AGG 0.510809 3_1:+88116656 Msa0384790:CDS
TGTGATGAGAGGGTAGTTGT+CGG 0.513549 3_1:-88118921 None:intergenic
GATGTGAAACGTGATTCTAA+TGG 0.514927 3_1:+88116323 Msa0384790:CDS
TATTATTTGCAAAATACCAC+TGG 0.520141 3_1:+88116282 Msa0384790:CDS
AGTTTGAATCTGAGTGGAAG+AGG 0.520947 3_1:+88117260 Msa0384790:CDS
ATTTAGTCTGCAACTTGTCA+AGG 0.524883 3_1:-88117747 None:intergenic
CAAGGGTTAAAATACAAGAT+GGG 0.527779 3_1:+88116726 Msa0384790:CDS
AAAGTCTGATTTGCAAGAGA+TGG 0.531904 3_1:+88117863 Msa0384790:CDS
GTTCTAATTGTAGAAATCCT+GGG 0.533951 3_1:+88118226 Msa0384790:CDS
AAGTGCCCCTCGACGAAACA+TGG 0.534361 3_1:-88117953 None:intergenic
CACGTCCGTATTGTGTGCCC+AGG 0.534840 3_1:-88118243 None:intergenic
ACAAATACAAGCACTAGAAA+GGG 0.535750 3_1:+88118609 Msa0384790:CDS
GTAGTTGTCGGAGGGAATTG+TGG 0.539742 3_1:-88118909 None:intergenic
TGTGACAAATGATGATATAA+GGG 0.541240 3_1:+88116217 Msa0384790:CDS
TTTATCGGTTGAAGAGAATG+TGG 0.541414 3_1:+88117329 Msa0384790:CDS
GAGTTGTGTTTCCAAATACA+AGG 0.541485 3_1:+88117128 Msa0384790:CDS
AGCTAATTCGTGGTTGTGAG+AGG 0.541718 3_1:-88116513 None:intergenic
AATAAGGAGGGTGTTAATGA+TGG 0.543414 3_1:+88116374 Msa0384790:CDS
AAGACAGCCATTGTGCAAGT+TGG 0.545484 3_1:+88118811 Msa0384790:CDS
TATCAGTATCAGCCTTACCT+TGG 0.546983 3_1:-88116775 None:intergenic
ACTTCATGGCACAAATAATG+TGG 0.547507 3_1:-88117816 None:intergenic
CAAAAGCGGTGATTACTGAT+GGG 0.550752 3_1:+88117080 Msa0384790:CDS
TTGACCTATCAAACAACAGG+TGG 0.553778 3_1:+88117296 Msa0384790:CDS
TCGTCATTTGCCTCCCAAGA+AGG 0.555407 3_1:+88117913 Msa0384790:CDS
GTTTGAATCTGAGTGGAAGA+GGG 0.557830 3_1:+88117261 Msa0384790:CDS
CACTGGTATTACACGTAAGA+GGG 0.559146 3_1:+88118530 Msa0384790:CDS
GGTGTCGTGTCTGAAGATCA+AGG 0.560464 3_1:+88118285 Msa0384790:CDS
CAGTGTTAGAATGTGATGAG+AGG 0.563750 3_1:-88118932 None:intergenic
CGAGATGTTGAGAAAAGCAC+TGG 0.563759 3_1:+88118513 Msa0384790:CDS
TTCATCATTACCTTCTTGGG+AGG 0.565482 3_1:-88117923 None:intergenic
GTCTGAAGATCAAGGGGAGA+AGG 0.567087 3_1:+88118293 Msa0384790:CDS
CCTTTGACATTCACCATCAG+TGG 0.574175 3_1:-88118162 None:intergenic
AACGCAAAGGAGCTAATTCG+TGG 0.575631 3_1:-88116523 None:intergenic
GTGGAATTTAACCATGGTAA+TGG 0.576772 3_1:+88116140 Msa0384790:CDS
GCACAAATAATGTGGGAACA+TGG 0.578248 3_1:-88117808 None:intergenic
GATGCAAATGCCAGGCGCAA+AGG 0.578385 3_1:-88117156 None:intergenic
AAATGACCATGTTTCGTCGA+GGG 0.581274 3_1:+88117947 Msa0384790:CDS
GTGTCGTGTCTGAAGATCAA+GGG 0.581492 3_1:+88118286 Msa0384790:CDS
GCTAATTCGTGGTTGTGAGA+GGG 0.582404 3_1:-88116512 None:intergenic
TCAATTAGTATGCAATAAGG+AGG 0.584633 3_1:+88116361 Msa0384790:CDS
AATGACCATGTTTCGTCGAG+GGG 0.585541 3_1:+88117948 Msa0384790:CDS
GCAAGTTGGAACCATAATGT+TGG 0.585606 3_1:+88118825 Msa0384790:CDS
TAAGATAAATAGCCGTCATG+AGG 0.585792 3_1:+88118065 Msa0384790:CDS
AGGGTGGCCATGAAGGACTT+GGG 0.586883 3_1:+88116663 Msa0384790:CDS
GAAGCTTCAAAGATATTCAC+CGG 0.587720 3_1:+88117583 Msa0384790:CDS
AAGATAAATAGCCGTCATGA+GGG 0.587755 3_1:+88118066 Msa0384790:CDS
ATACTCACCGGTGTATAACT+CGG 0.588936 3_1:-88118981 None:intergenic
ATGAGAGGGTAGTTGTCGGA+GGG 0.591320 3_1:-88118917 None:intergenic
CATGTCCATTTCCCTCATGA+CGG 0.591948 3_1:-88118077 None:intergenic
ATTTCACGGATCATCAGGCA+AGG 0.592596 3_1:+88116708 Msa0384790:CDS
TGGAACCATAATGTTGGGTA+TGG 0.594448 3_1:+88118831 Msa0384790:CDS
CTTCATGGCACAAATAATGT+GGG 0.594948 3_1:-88117815 None:intergenic
TTATCGGTTGAAGAGAATGT+GGG 0.595180 3_1:+88117330 Msa0384790:CDS
GCTACTTTGAGTTATTTCCA+AGG 0.596592 3_1:+88116758 Msa0384790:CDS
TATGAGTGCGTTGAAGAATG+TGG 0.597255 3_1:+88119084 Msa0384790:CDS
GAACGAGATGAAGATGAGGA+TGG 0.598765 3_1:+88117664 Msa0384790:CDS
CAAGTTGGAACCATAATGTT+GGG 0.599464 3_1:+88118826 Msa0384790:CDS
CCTTTCTTACTTCAAACCAG+TGG 0.606619 3_1:-88116298 None:intergenic
GTCAATGCAGTTGTCAGCAT+AGG 0.607551 3_1:-88117547 None:intergenic
ATATAGTGATACAGATGAGG+TGG 0.607738 3_1:+88115968 Msa0384790:CDS
CTGAAAAGTTTGAATCTGAG+TGG 0.609008 3_1:+88117254 Msa0384790:CDS
AAGGGTTAAAATACAAGATG+GGG 0.610552 3_1:+88116727 Msa0384790:CDS
AAACATCGCAGTGACTATTG+TGG 0.611836 3_1:+88119118 Msa0384790:CDS
ATTATAAGGAGGCTCTAGAA+GGG 0.613050 3_1:+88118025 Msa0384790:CDS
GACACTGATAGTGATACAGA+TGG 0.614810 3_1:+88116014 Msa0384790:CDS
TTAGAACAACATCTTGTCCT+CGG 0.616961 3_1:-88118210 None:intergenic
GTTGATAAACAAGTTGCTAG+TGG 0.617676 3_1:+88116584 Msa0384790:CDS
TGATAGTGATACAGATGGGG+TGG 0.618742 3_1:+88116019 Msa0384790:CDS
GATGAGAGGGTAGTTGTCGG+AGG 0.619255 3_1:-88118918 None:intergenic
AAATGGTTGTTTCTCCATGG+TGG 0.622494 3_1:-88116970 None:intergenic
CATTGAACGAGATGAAGATG+AGG 0.623154 3_1:+88117660 Msa0384790:CDS
CCACTGATGGTGAATGTCAA+AGG 0.624002 3_1:+88118162 Msa0384790:CDS
TATGGTTCCAACTTGCACAA+TGG 0.627946 3_1:-88118818 None:intergenic
TTTCACGGATCATCAGGCAA+GGG 0.637022 3_1:+88116709 Msa0384790:CDS
AAAAGCGGTGATTACTGATG+GGG 0.637407 3_1:+88117081 Msa0384790:CDS
TTTAGTGGATATAACCACCA+TGG 0.638528 3_1:+88116956 Msa0384790:CDS
AGAACGACATCAATCTGTGA+AGG 0.639278 3_1:+88117391 Msa0384790:CDS
CATTGCAAACACCATTACCA+TGG 0.642035 3_1:-88116151 None:intergenic
TATGGGCTGCCAAATAATGG+TGG 0.644398 3_1:+88118876 Msa0384790:CDS
AATGGTGTTTGCAATGAGCA+AGG 0.648235 3_1:+88116158 Msa0384790:CDS
GCTAGTGGTCTACATTCGCA+AGG 0.649023 3_1:+88116599 Msa0384790:CDS
AACAATAGAGACATACAAGT+GGG 0.649289 3_1:+88117018 Msa0384790:CDS
ATCAAATGGACAAAACGCAA+AGG 0.651947 3_1:-88116536 None:intergenic
AAAATGACCATGTTTCGTCG+AGG 0.652304 3_1:+88117946 Msa0384790:CDS
TGACCTATCAAACAACAGGT+GGG 0.653955 3_1:+88117297 Msa0384790:CDS
TGAGGGAAATGGACATGACA+AGG 0.654599 3_1:+88118083 Msa0384790:CDS
ATGGTGTTTGCAATGAGCAA+GGG 0.657603 3_1:+88116159 Msa0384790:CDS
TCTGTAGCAGTGTCAAATGG+TGG 0.657609 3_1:+88118489 Msa0384790:CDS
TGATGGAGATGCAGACGGTG+TGG 0.658848 3_1:+88116121 Msa0384790:CDS
ACACTGATAGTGATACAGAT+GGG 0.663559 3_1:+88116015 Msa0384790:CDS
TGTCGTGTCTGAAGATCAAG+GGG 0.668190 3_1:+88118287 Msa0384790:CDS
AAACAATAGAGACATACAAG+TGG 0.671084 3_1:+88117017 Msa0384790:CDS
TGCCATGAAGTATGACAACA+TGG 0.671427 3_1:+88117828 Msa0384790:CDS
GTATGACAAACATCCAAAAG+CGG 0.671446 3_1:+88117066 Msa0384790:CDS
TGAATGTCAAAGGTGCCCGT+AGG 0.674674 3_1:+88118172 Msa0384790:CDS
CAATTAGTATGCAATAAGGA+GGG 0.675920 3_1:+88116362 Msa0384790:CDS
CGTATTGATGGAGATGCAGA+CGG 0.679775 3_1:+88116116 Msa0384790:CDS
CAATGTTCCGAGTTATACAC+CGG 0.682160 3_1:+88118974 Msa0384790:CDS
CATTTGACACTGCTACAGAG+TGG 0.682675 3_1:-88118485 None:intergenic
GAGCGCAAGTGATTATAAGG+AGG 0.683366 3_1:+88118014 Msa0384790:CDS
TGTTGCGAATGATCCACTGA+TGG 0.687875 3_1:+88118149 Msa0384790:CDS
GACGGTGTGGAATTTAACCA+TGG 0.688761 3_1:+88116134 Msa0384790:CDS
TGTATATAGTGATACAGATG+AGG 0.703043 3_1:+88115965 Msa0384790:CDS
TGTAGACGCTTTGAACGCAG+AGG 0.705116 3_1:+88117781 Msa0384790:CDS
ACATAGACTATTGAACGCAG+CGG 0.723695 3_1:-88117977 None:intergenic
CACTGATAGTGATACAGATG+GGG 0.724418 3_1:+88116016 Msa0384790:CDS
AATTATGCAAGAAATCCACA+AGG 0.743577 3_1:-88117456 None:intergenic
GGATATGGAATTCAACACAG+AGG 0.763384 3_1:+88116238 Msa0384790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAAATTGTATATGATATTT+TGG + chr3_1:88118414-88118433 Msa0384790:intron 15.0%
!!! AATTATTTTAATATGCACTA+TGG + chr3_1:88118858-88118877 Msa0384790:CDS 15.0%
!!! ATTATTTTAATATGCACTAT+GGG + chr3_1:88118859-88118878 Msa0384790:CDS 15.0%
!!! TCATAAACTGTTTTAAATAT+AGG - chr3_1:88119069-88119088 None:intergenic 15.0%
!! AAAGGACTTATATAATTTCA+CGG + chr3_1:88116694-88116713 Msa0384790:CDS 20.0%
!! AAAGTTTAAAGATGTCAAAA+AGG + chr3_1:88117609-88117628 Msa0384790:CDS 20.0%
!!! ATTTTCAAGGTTAATGTATT+TGG + chr3_1:88117697-88117716 Msa0384790:CDS 20.0%
!!! TTGTTTTAATTGTTGTAGAA+TGG + chr3_1:88118747-88118766 Msa0384790:intron 20.0%
! GTATCACTATATACATCAAA+AGG - chr3_1:88115960-88115979 None:intergenic 25.0%
! ATGTGACAAATGATGATATA+AGG + chr3_1:88116216-88116235 Msa0384790:CDS 25.0%
! TGTGACAAATGATGATATAA+GGG + chr3_1:88116217-88116236 Msa0384790:CDS 25.0%
! AAATGATGATATAAGGGATA+TGG + chr3_1:88116223-88116242 Msa0384790:CDS 25.0%
! TATTATTTGCAAAATACCAC+TGG + chr3_1:88116282-88116301 Msa0384790:CDS 25.0%
! GATGGAAAAAATAAGAAGAA+TGG + chr3_1:88116392-88116411 Msa0384790:CDS 25.0%
! ATATCCACTAAAAATGACAA+GGG - chr3_1:88116948-88116967 None:intergenic 25.0%
! TATATCCACTAAAAATGACA+AGG - chr3_1:88116949-88116968 None:intergenic 25.0%
! AATTAAAGCACAAGCAAAAA+TGG - chr3_1:88116990-88117009 None:intergenic 25.0%
!!! GGTTCTAAATTTGTTTTCAA+AGG + chr3_1:88117039-88117058 Msa0384790:CDS 25.0%
! GGTGGGTAAAAAAAATTTAT+CGG + chr3_1:88117314-88117333 Msa0384790:CDS 25.0%
!! GACATCTTTAAACTTTTTAC+CGG - chr3_1:88117605-88117624 None:intergenic 25.0%
!! CAAAAAAGATGTAGCTTTTT+CGG + chr3_1:88117720-88117739 Msa0384790:CDS 25.0%
!! TTTTTCATCATTACCTTCTT+GGG - chr3_1:88117929-88117948 None:intergenic 25.0%
!!! TTTTTTCATCATTACCTTCT+TGG - chr3_1:88117930-88117949 None:intergenic 25.0%
!! TCAATGTTGATTGTGATATT+TGG - chr3_1:88118651-88118670 None:intergenic 25.0%
! CAGCAAATATACTATAACAA+AGG - chr3_1:88118684-88118703 None:intergenic 25.0%
! AAAATTGATCCACCATTATT+TGG - chr3_1:88118888-88118907 None:intergenic 25.0%
! TAAACAATCAAAATACTCAC+CGG - chr3_1:88118996-88119015 None:intergenic 25.0%
TGTATATAGTGATACAGATG+AGG + chr3_1:88115965-88115984 Msa0384790:CDS 30.0%
ATGTGAAACGTGATTCTAAT+GGG + chr3_1:88116324-88116343 Msa0384790:CDS 30.0%
TCAATTAGTATGCAATAAGG+AGG + chr3_1:88116361-88116380 Msa0384790:CDS 30.0%
CAATTAGTATGCAATAAGGA+GGG + chr3_1:88116362-88116381 Msa0384790:CDS 30.0%
!! TCACTCAATTTGCTGTAATT+AGG - chr3_1:88116563-88116582 None:intergenic 30.0%
TGTAAGAACATGTCATATCT+TGG + chr3_1:88116622-88116641 Msa0384790:CDS 30.0%
GTAAGAACATGTCATATCTT+GGG + chr3_1:88116623-88116642 Msa0384790:CDS 30.0%
!!! TCATATCTTGGGTTTTTTGA+TGG + chr3_1:88116634-88116653 Msa0384790:CDS 30.0%
!!! CATATCTTGGGTTTTTTGAT+GGG + chr3_1:88116635-88116654 Msa0384790:CDS 30.0%
ATATAATTTCACGGATCATC+AGG + chr3_1:88116703-88116722 Msa0384790:CDS 30.0%
CAAGGGTTAAAATACAAGAT+GGG + chr3_1:88116726-88116745 Msa0384790:CDS 30.0%
AAGGGTTAAAATACAAGATG+GGG + chr3_1:88116727-88116746 Msa0384790:CDS 30.0%
! TTTGAGTTATTTCCAAGGTA+AGG + chr3_1:88116763-88116782 Msa0384790:CDS 30.0%
GAGTTTACATTTACAGATGA+TGG + chr3_1:88116812-88116831 Msa0384790:CDS 30.0%
!!! ACGCCTAGAAAACATTTTTT+GGG + chr3_1:88116835-88116854 Msa0384790:CDS 30.0%
ATACTTGTTCTTTCTATAGG+TGG - chr3_1:88116918-88116937 None:intergenic 30.0%
ACCTATAGAAAGAACAAGTA+TGG + chr3_1:88116917-88116936 Msa0384790:CDS 30.0%
TCCATACTTGTTCTTTCTAT+AGG - chr3_1:88116921-88116940 None:intergenic 30.0%
TATCCACTAAAAATGACAAG+GGG - chr3_1:88116947-88116966 None:intergenic 30.0%
AAACAATAGAGACATACAAG+TGG + chr3_1:88117017-88117036 Msa0384790:CDS 30.0%
AACAATAGAGACATACAAGT+GGG + chr3_1:88117018-88117037 Msa0384790:CDS 30.0%
! TTTTGGATGTTTGTCATACA+TGG - chr3_1:88117065-88117084 None:intergenic 30.0%
!! ATTTTGACCTATCAAACAAC+AGG + chr3_1:88117293-88117312 Msa0384790:CDS 30.0%
TTCTAACACCACACAAAAAA+TGG - chr3_1:88117375-88117394 None:intergenic 30.0%
AATTATGCAAGAAATCCACA+AGG - chr3_1:88117459-88117478 None:intergenic 30.0%
!!! TGGAAACATTGTCATTTTCA+AGG + chr3_1:88117684-88117703 Msa0384790:CDS 30.0%
!! TAAATTTGTTGCGAGTGATA+AGG + chr3_1:88118116-88118135 Msa0384790:CDS 30.0%
ATCATTCGCAACAAATTTGT+TGG - chr3_1:88118142-88118161 None:intergenic 30.0%
TGTTCTAATTGTAGAAATCC+TGG + chr3_1:88118225-88118244 Msa0384790:CDS 30.0%
GTTCTAATTGTAGAAATCCT+GGG + chr3_1:88118226-88118245 Msa0384790:CDS 30.0%
GATTCATTATCAGACTCAAT+AGG - chr3_1:88118324-88118343 None:intergenic 30.0%
AACAAATACAAGCACTAGAA+AGG + chr3_1:88118608-88118627 Msa0384790:CDS 30.0%
ACAAATACAAGCACTAGAAA+GGG + chr3_1:88118609-88118628 Msa0384790:CDS 30.0%
! ATTTTTCATGTCCAAAGTCA+CGG - chr3_1:88118779-88118798 None:intergenic 30.0%
ATATAGTGATACAGATGAGG+TGG + chr3_1:88115968-88115987 Msa0384790:CDS 35.0%
! ACACTGATAGTGATACAGAT+GGG + chr3_1:88116015-88116034 Msa0384790:CDS 35.0%
AACAACGATGTTCGTATTGA+TGG + chr3_1:88116104-88116123 Msa0384790:CDS 35.0%
GTGGAATTTAACCATGGTAA+TGG + chr3_1:88116140-88116159 Msa0384790:CDS 35.0%
GATGTGAAACGTGATTCTAA+TGG + chr3_1:88116323-88116342 Msa0384790:CDS 35.0%
GCGTCAATTAGTATGCAATA+AGG + chr3_1:88116358-88116377 Msa0384790:CDS 35.0%
!! AATAAGGAGGGTGTTAATGA+TGG + chr3_1:88116374-88116393 Msa0384790:CDS 35.0%
TGCAGAACAATTAGTTCGAA+TGG - chr3_1:88116435-88116454 None:intergenic 35.0%
ATCAAATGGACAAAACGCAA+AGG - chr3_1:88116539-88116558 None:intergenic 35.0%
TGCTGTAATTAGGCATCAAA+TGG - chr3_1:88116553-88116572 None:intergenic 35.0%
! GTTGATAAACAAGTTGCTAG+TGG + chr3_1:88116584-88116603 Msa0384790:CDS 35.0%
!!! GGTTTTTTGATGGGTCAAAA+GGG + chr3_1:88116644-88116663 Msa0384790:CDS 35.0%
AGGACTTGGGTTTATCAAAA+AGG + chr3_1:88116676-88116695 Msa0384790:CDS 35.0%
GCAAGGGTTAAAATACAAGA+TGG + chr3_1:88116725-88116744 Msa0384790:CDS 35.0%
! GCTACTTTGAGTTATTTCCA+AGG + chr3_1:88116758-88116777 Msa0384790:CDS 35.0%
!!! GACGCCTAGAAAACATTTTT+TGG + chr3_1:88116834-88116853 Msa0384790:CDS 35.0%
! CTGCCCAAAAAATGTTTTCT+AGG - chr3_1:88116841-88116860 None:intergenic 35.0%
! AGGTTTGACTATGAGTGTTT+TGG + chr3_1:88116872-88116891 Msa0384790:CDS 35.0%
!!! AAACCCCTTGTCATTTTTAG+TGG + chr3_1:88116941-88116960 Msa0384790:CDS 35.0%
! TTTAGTGGATATAACCACCA+TGG + chr3_1:88116956-88116975 Msa0384790:CDS 35.0%
!! CAAAAATGGTTGTTTCTCCA+TGG - chr3_1:88116976-88116995 None:intergenic 35.0%
GTATGACAAACATCCAAAAG+CGG + chr3_1:88117066-88117085 Msa0384790:CDS 35.0%
GAGTTGTGTTTCCAAATACA+AGG + chr3_1:88117128-88117147 Msa0384790:CDS 35.0%
!!! TCAAACTTTTCAGGTGTACA+AGG - chr3_1:88117247-88117266 None:intergenic 35.0%
! CACTCAGATTCAAACTTTTC+AGG - chr3_1:88117256-88117275 None:intergenic 35.0%
CTGAAAAGTTTGAATCTGAG+TGG + chr3_1:88117254-88117273 Msa0384790:CDS 35.0%
! TTTATCGGTTGAAGAGAATG+TGG + chr3_1:88117329-88117348 Msa0384790:CDS 35.0%
! TTATCGGTTGAAGAGAATGT+GGG + chr3_1:88117330-88117349 Msa0384790:CDS 35.0%
GAAGCTTCAAAGATATTCAC+CGG + chr3_1:88117583-88117602 Msa0384790:CDS 35.0%
ATTTAGTCTGCAACTTGTCA+AGG - chr3_1:88117750-88117769 None:intergenic 35.0%
CTTCATGGCACAAATAATGT+GGG - chr3_1:88117818-88117837 None:intergenic 35.0%
ACTTCATGGCACAAATAATG+TGG - chr3_1:88117819-88117838 None:intergenic 35.0%
ATCCATGTTGTCATACTTCA+TGG - chr3_1:88117833-88117852 None:intergenic 35.0%
! AAAGTCTGATTTGCAAGAGA+TGG + chr3_1:88117863-88117882 Msa0384790:CDS 35.0%
! TAAGAGCGCAAGTGATTATA+AGG + chr3_1:88118011-88118030 Msa0384790:CDS 35.0%
!! ATTATAAGGAGGCTCTAGAA+GGG + chr3_1:88118025-88118044 Msa0384790:CDS 35.0%
TAAGATAAATAGCCGTCATG+AGG + chr3_1:88118065-88118084 Msa0384790:CDS 35.0%
AAGATAAATAGCCGTCATGA+GGG + chr3_1:88118066-88118085 Msa0384790:CDS 35.0%
AAATGGACATGACAAGGATA+AGG + chr3_1:88118089-88118108 Msa0384790:CDS 35.0%
AATGGACATGACAAGGATAA+GGG + chr3_1:88118090-88118109 Msa0384790:CDS 35.0%
!!! TGTTGACTTTTTACTCCTAC+GGG - chr3_1:88118190-88118209 None:intergenic 35.0%
!!! GTGTTGACTTTTTACTCCTA+CGG - chr3_1:88118191-88118210 None:intergenic 35.0%
TTAGAACAACATCTTGTCCT+CGG - chr3_1:88118213-88118232 None:intergenic 35.0%
TATCATTACTCATAGACAGC+TGG - chr3_1:88118452-88118471 None:intergenic 35.0%
!! TGCTGAAAATTGTGTTGCTT+TGG + chr3_1:88118699-88118718 Msa0384790:intron 35.0%
! TTTTTCATGTCCAAAGTCAC+GGG - chr3_1:88118778-88118797 None:intergenic 35.0%
! CAAGTTGGAACCATAATGTT+GGG + chr3_1:88118826-88118845 Msa0384790:CDS 35.0%
TAACACCATACCCAACATTA+TGG - chr3_1:88118839-88118858 None:intergenic 35.0%
AGTGTTAGAATGTGATGAGA+GGG - chr3_1:88118934-88118953 None:intergenic 35.0%
! GACACTGATAGTGATACAGA+TGG + chr3_1:88116014-88116033 Msa0384790:CDS 40.0%
! CACTGATAGTGATACAGATG+GGG + chr3_1:88116016-88116035 Msa0384790:CDS 40.0%
CATTGCAAACACCATTACCA+TGG - chr3_1:88116154-88116173 None:intergenic 40.0%
AATGGTGTTTGCAATGAGCA+AGG + chr3_1:88116158-88116177 Msa0384790:CDS 40.0%
ATGGTGTTTGCAATGAGCAA+GGG + chr3_1:88116159-88116178 Msa0384790:CDS 40.0%
CAAGGGAAAGAGAACTTTGA+TGG + chr3_1:88116176-88116195 Msa0384790:CDS 40.0%
GGATATGGAATTCAACACAG+AGG + chr3_1:88116238-88116257 Msa0384790:CDS 40.0%
CCTTTCTTACTTCAAACCAG+TGG - chr3_1:88116301-88116320 None:intergenic 40.0%
!! CCACTGGTTTGAAGTAAGAA+AGG + chr3_1:88116298-88116317 Msa0384790:CDS 40.0%
TTCGAATGGTTAGCGTAGAT+CGG - chr3_1:88116421-88116440 None:intergenic 40.0%
ACGACTTTGTTCGTACGATT+TGG + chr3_1:88116471-88116490 Msa0384790:CDS 40.0%
!!! GGGTTTTTTGATGGGTCAAA+AGG + chr3_1:88116643-88116662 Msa0384790:CDS 40.0%
!! TTTTTGATGGGTCAAAAGGG+TGG + chr3_1:88116647-88116666 Msa0384790:CDS 40.0%
TGATAAACCCAAGTCCTTCA+TGG - chr3_1:88116673-88116692 None:intergenic 40.0%
TATCAGTATCAGCCTTACCT+TGG - chr3_1:88116778-88116797 None:intergenic 40.0%
TTTGGGCAGATTCTACTAGT+AGG + chr3_1:88116852-88116871 Msa0384790:CDS 40.0%
!! AAATGGTTGTTTCTCCATGG+TGG - chr3_1:88116973-88116992 None:intergenic 40.0%
CAAAAGCGGTGATTACTGAT+GGG + chr3_1:88117080-88117099 Msa0384790:CDS 40.0%
AAAAGCGGTGATTACTGATG+GGG + chr3_1:88117081-88117100 Msa0384790:CDS 40.0%
CAAAGGTGATGCCTTGTATT+TGG - chr3_1:88117142-88117161 None:intergenic 40.0%
AACATTTCGATGCAAATGCC+AGG - chr3_1:88117167-88117186 None:intergenic 40.0%
AGTTTGAATCTGAGTGGAAG+AGG + chr3_1:88117260-88117279 Msa0384790:CDS 40.0%
GTTTGAATCTGAGTGGAAGA+GGG + chr3_1:88117261-88117280 Msa0384790:CDS 40.0%
TTGACCTATCAAACAACAGG+TGG + chr3_1:88117296-88117315 Msa0384790:CDS 40.0%
TGACCTATCAAACAACAGGT+GGG + chr3_1:88117297-88117316 Msa0384790:CDS 40.0%
! TTACCCACCTGTTGTTTGAT+AGG - chr3_1:88117303-88117322 None:intergenic 40.0%
!!! ATGCGAGACCATTTTTTGTG+TGG + chr3_1:88117364-88117383 Msa0384790:CDS 40.0%
AGAACGACATCAATCTGTGA+AGG + chr3_1:88117391-88117410 Msa0384790:CDS 40.0%
!!! CCACAAGGCTATTTTTGTGT+CGG - chr3_1:88117444-88117463 None:intergenic 40.0%
AGATGTCAAAAAGGCGATAG+AGG + chr3_1:88117618-88117637 Msa0384790:CDS 40.0%
CATTGAACGAGATGAAGATG+AGG + chr3_1:88117660-88117679 Msa0384790:CDS 40.0%
GCACAAATAATGTGGGAACA+TGG - chr3_1:88117811-88117830 None:intergenic 40.0%
TGCCATGAAGTATGACAACA+TGG + chr3_1:88117828-88117847 Msa0384790:CDS 40.0%
CTCTTGCAAATCAGACTTTC+AGG - chr3_1:88117862-88117881 None:intergenic 40.0%
TTCATCATTACCTTCTTGGG+AGG - chr3_1:88117926-88117945 None:intergenic 40.0%
AAAATGACCATGTTTCGTCG+AGG + chr3_1:88117946-88117965 Msa0384790:CDS 40.0%
AAATGACCATGTTTCGTCGA+GGG + chr3_1:88117947-88117966 Msa0384790:CDS 40.0%
ACATAGACTATTGAACGCAG+CGG - chr3_1:88117980-88117999 None:intergenic 40.0%
!! GATTATAAGGAGGCTCTAGA+AGG + chr3_1:88118024-88118043 Msa0384790:CDS 40.0%
CACTGGTATTACACGTAAGA+GGG + chr3_1:88118530-88118549 Msa0384790:CDS 40.0%
TATGGTTCCAACTTGCACAA+TGG - chr3_1:88118821-88118840 None:intergenic 40.0%
! GCAAGTTGGAACCATAATGT+TGG + chr3_1:88118825-88118844 Msa0384790:CDS 40.0%
TGGAACCATAATGTTGGGTA+TGG + chr3_1:88118831-88118850 Msa0384790:CDS 40.0%
CAGTGTTAGAATGTGATGAG+AGG - chr3_1:88118935-88118954 None:intergenic 40.0%
CAATGTTCCGAGTTATACAC+CGG + chr3_1:88118974-88118993 Msa0384790:CDS 40.0%
ATACTCACCGGTGTATAACT+CGG - chr3_1:88118984-88119003 None:intergenic 40.0%
TATGAGTGCGTTGAAGAATG+TGG + chr3_1:88119084-88119103 Msa0384790:CDS 40.0%
AAACATCGCAGTGACTATTG+TGG + chr3_1:88119118-88119137 Msa0384790:CDS 40.0%
! TGATAGTGATACAGATGGGG+TGG + chr3_1:88116019-88116038 Msa0384790:CDS 45.0%
! CGTATTGATGGAGATGCAGA+CGG + chr3_1:88116116-88116135 Msa0384790:CDS 45.0%
GACGGTGTGGAATTTAACCA+TGG + chr3_1:88116134-88116153 Msa0384790:CDS 45.0%
GCTAATTCGTGGTTGTGAGA+GGG - chr3_1:88116515-88116534 None:intergenic 45.0%
AGCTAATTCGTGGTTGTGAG+AGG - chr3_1:88116516-88116535 None:intergenic 45.0%
AACGCAAAGGAGCTAATTCG+TGG - chr3_1:88116526-88116545 None:intergenic 45.0%
ATTTCACGGATCATCAGGCA+AGG + chr3_1:88116708-88116727 Msa0384790:CDS 45.0%
TTTCACGGATCATCAGGCAA+GGG + chr3_1:88116709-88116728 Msa0384790:CDS 45.0%
! CCATCAGTAATCACCGCTTT+TGG - chr3_1:88117082-88117101 None:intergenic 45.0%
CCAAAAGCGGTGATTACTGA+TGG + chr3_1:88117079-88117098 Msa0384790:CDS 45.0%
! CCGACACAAAAATAGCCTTG+TGG + chr3_1:88117441-88117460 Msa0384790:CDS 45.0%
GTCAATGCAGTTGTCAGCAT+AGG - chr3_1:88117550-88117569 None:intergenic 45.0%
GAACGAGATGAAGATGAGGA+TGG + chr3_1:88117664-88117683 Msa0384790:CDS 45.0%
AATGACCATGTTTCGTCGAG+GGG + chr3_1:88117948-88117967 Msa0384790:CDS 45.0%
GAGCGCAAGTGATTATAAGG+AGG + chr3_1:88118014-88118033 Msa0384790:CDS 45.0%
AATAGCCGTCATGAGGGAAA+TGG + chr3_1:88118072-88118091 Msa0384790:CDS 45.0%
CATGTCCATTTCCCTCATGA+CGG - chr3_1:88118080-88118099 None:intergenic 45.0%
TGAGGGAAATGGACATGACA+AGG + chr3_1:88118083-88118102 Msa0384790:CDS 45.0%
TGTTGCGAATGATCCACTGA+TGG + chr3_1:88118149-88118168 Msa0384790:CDS 45.0%
CCTTTGACATTCACCATCAG+TGG - chr3_1:88118165-88118184 None:intergenic 45.0%
! CCACTGATGGTGAATGTCAA+AGG + chr3_1:88118162-88118181 Msa0384790:CDS 45.0%
GGAGTAAAAAGTCAACACCG+AGG + chr3_1:88118193-88118212 Msa0384790:CDS 45.0%
GAAATCCTGGGCACACAATA+CGG + chr3_1:88118238-88118257 Msa0384790:CDS 45.0%
!! TGTCCAGAACTTGCTGGAAT+TGG + chr3_1:88118264-88118283 Msa0384790:CDS 45.0%
ACACCAATTCCAGCAAGTTC+TGG - chr3_1:88118270-88118289 None:intergenic 45.0%
GTGTCGTGTCTGAAGATCAA+GGG + chr3_1:88118286-88118305 Msa0384790:CDS 45.0%
TGTCGTGTCTGAAGATCAAG+GGG + chr3_1:88118287-88118306 Msa0384790:CDS 45.0%
CATTTGACACTGCTACAGAG+TGG - chr3_1:88118488-88118507 None:intergenic 45.0%
CACTCTGTAGCAGTGTCAAA+TGG + chr3_1:88118486-88118505 Msa0384790:CDS 45.0%
TCTGTAGCAGTGTCAAATGG+TGG + chr3_1:88118489-88118508 Msa0384790:CDS 45.0%
! CGAGATGTTGAGAAAAGCAC+TGG + chr3_1:88118513-88118532 Msa0384790:CDS 45.0%
! GCACTGGTATTACACGTAAG+AGG + chr3_1:88118529-88118548 Msa0384790:CDS 45.0%
AAGACAGCCATTGTGCAAGT+TGG + chr3_1:88118811-88118830 Msa0384790:CDS 45.0%
! CACTATGGGCTGCCAAATAA+TGG + chr3_1:88118873-88118892 Msa0384790:CDS 45.0%
! TATGGGCTGCCAAATAATGG+TGG + chr3_1:88118876-88118895 Msa0384790:CDS 45.0%
TGTGATGAGAGGGTAGTTGT+CGG - chr3_1:88118924-88118943 None:intergenic 45.0%
TCTAACACTGCTCTGCATAC+TGG + chr3_1:88118945-88118964 Msa0384790:CDS 45.0%
GCTAGTGGTCTACATTCGCA+AGG + chr3_1:88116599-88116618 Msa0384790:CDS 50.0%
! TGTAGACGCTTTGAACGCAG+AGG + chr3_1:88117781-88117800 Msa0384790:CDS 50.0%
TCGTCATTTGCCTCCCAAGA+AGG + chr3_1:88117913-88117932 Msa0384790:CDS 50.0%
!! TGAATGTCAAAGGTGCCCGT+AGG + chr3_1:88118172-88118191 Msa0384790:CDS 50.0%
! GGTGTCGTGTCTGAAGATCA+AGG + chr3_1:88118285-88118304 Msa0384790:CDS 50.0%
GTCTGAAGATCAAGGGGAGA+AGG + chr3_1:88118293-88118312 Msa0384790:CDS 50.0%
AATGGTGTGACCCGTGACTT+TGG + chr3_1:88118765-88118784 Msa0384790:CDS 50.0%
GTAGTTGTCGGAGGGAATTG+TGG - chr3_1:88118912-88118931 None:intergenic 50.0%
ATGAGAGGGTAGTTGTCGGA+GGG - chr3_1:88118920-88118939 None:intergenic 50.0%
TGATGGAGATGCAGACGGTG+TGG + chr3_1:88116121-88116140 Msa0384790:CDS 55.0%
GGTCAAAAGGGTGGCCATGA+AGG + chr3_1:88116656-88116675 Msa0384790:CDS 55.0%
AAGGGTGGCCATGAAGGACT+TGG + chr3_1:88116662-88116681 Msa0384790:CDS 55.0%
AGGGTGGCCATGAAGGACTT+GGG + chr3_1:88116663-88116682 Msa0384790:CDS 55.0%
GATGCAAATGCCAGGCGCAA+AGG - chr3_1:88117159-88117178 None:intergenic 55.0%
AAGTGCCCCTCGACGAAACA+TGG - chr3_1:88117956-88117975 None:intergenic 55.0%
GATGAGAGGGTAGTTGTCGG+AGG - chr3_1:88118921-88118940 None:intergenic 55.0%
! CAAGGCATCACCTTTGCGCC+TGG + chr3_1:88117146-88117165 Msa0384790:CDS 60.0%
CACGTCCGTATTGTGTGCCC+AGG - chr3_1:88118246-88118265 None:intergenic 60.0%
CGGACGTGTCCAGAACTTGC+TGG + chr3_1:88118258-88118277 Msa0384790:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 88115930 88119153 88115930 ID=Msa0384790;Name=Msa0384790
chr3_1 mRNA 88115930 88119153 88115930 ID=Msa0384790-mRNA-1;Parent=Msa0384790;Name=Msa0384790-mRNA-1;_AED=0.25;_eAED=0.28;_QI=0|0|0|0.25|1|1|4|0|983
chr3_1 exon 88115930 88118356 88115930 ID=Msa0384790-mRNA-1:exon:23694;Parent=Msa0384790-mRNA-1
chr3_1 exon 88118453 88118674 88118453 ID=Msa0384790-mRNA-1:exon:23695;Parent=Msa0384790-mRNA-1
chr3_1 exon 88118765 88118995 88118765 ID=Msa0384790-mRNA-1:exon:23696;Parent=Msa0384790-mRNA-1
chr3_1 exon 88119082 88119153 88119082 ID=Msa0384790-mRNA-1:exon:23697;Parent=Msa0384790-mRNA-1
chr3_1 CDS 88115930 88118356 88115930 ID=Msa0384790-mRNA-1:cds;Parent=Msa0384790-mRNA-1
chr3_1 CDS 88118453 88118674 88118453 ID=Msa0384790-mRNA-1:cds;Parent=Msa0384790-mRNA-1
chr3_1 CDS 88118765 88118995 88118765 ID=Msa0384790-mRNA-1:cds;Parent=Msa0384790-mRNA-1
chr3_1 CDS 88119082 88119153 88119082 ID=Msa0384790-mRNA-1:cds;Parent=Msa0384790-mRNA-1
Gene Sequence

>Msa0384790

ATGTCTACATATAGTGAAGCAACATTGCCTTTTGATGTATATAGTGATACAGATGAGGTGGAATTTAATAGTGTTAATGATATTGACACTGATAGTGATACAGATGGGGTGGAATTTAACAGTGTTAATGATGTTGACACTGATAGTGATACTGAAGATATAAAAGTCAATAGCAACAACGATGTTCGTATTGATGGAGATGCAGACGGTGTGGAATTTAACCATGGTAATGGTGTTTGCAATGAGCAAGGGAAAGAGAACTTTGATGGCTACAAATGCATCAGTGATGTGACAAATGATGATATAAGGGATATGGAATTCAACACAGAGGATGAAGCTATAAAGTTTTATGTATTATTTGCAAAATACCACTGGTTTGAAGTAAGAAAGGATGATGTGAAACGTGATTCTAATGGGAACATTATCATGCGTCAATTAGTATGCAATAAGGAGGGTGTTAATGATGGAAAAAATAAGAAGAATGGCAGCCGATCTACGCTAACCATTCGAACTAATTGTTCTGCAAAACTTCGAGTAGTCTACGACTTTGTTCGTACGATTTGGAGAGTTTCTGTTTTCAAACCCTCTCACAACCACGAATTAGCTCCTTTGCGTTTTGTCCATTTGATGCCTAATTACAGCAAATTGAGTGAAGTTGATAAACAAGTTGCTAGTGGTCTACATTCGCAAGGTGTAAGAACATGTCATATCTTGGGTTTTTTGATGGGTCAAAAGGGTGGCCATGAAGGACTTGGGTTTATCAAAAAGGACTTATATAATTTCACGGATCATCAGGCAAGGGTTAAAATACAAGATGGGGATACTTTTGCTACTTTGAGTTATTTCCAAGGTAAGGCTGATACTGATACATCATTCTTTTCAGAGTTTACATTTACAGATGATGGACGCCTAGAAAACATTTTTTGGGCAGATTCTACTAGTAGGTTTGACTATGAGTGTTTTGGCGATGTTGTTGCATTTGACACCACCTATAGAAAGAACAAGTATGGAAAACCCCTTGTCATTTTTAGTGGATATAACCACCATGGAGAAACAACCATTTTTGCTTGTGCTTTAATTTGTGATGAAACAATAGAGACATACAAGTGGGTTCTAAATTTGTTTTCAAAGGCCATGTATGACAAACATCCAAAAGCGGTGATTACTGATGGGGATAAATCAATGAGAAAAGCTATCAGAGTTGTGTTTCCAAATACAAGGCATCACCTTTGCGCCTGGCATTTGCATCGAAATGTTGTTCAACATGTGAAGAATTCAAAATTTTTAGAAGAGTTCAAGTCACTGATGTATTCTCCTTGTACACCTGAAAAGTTTGAATCTGAGTGGAAGAGGGTTGTTGAAAATTTTGACCTATCAAACAACAGGTGGGTAAAAAAAATTTATCGGTTGAAGAGAATGTGGGCAAGTGCATACATGCGAGACCATTTTTTGTGTGGTGTTAGAACGACATCAATCTGTGAAGGAGTGAATTCATTTATCAAGAAGTATGTCCGACACAAAAATAGCCTTGTGGATTTCTTGCATAATTTTGAAAGAGCTCTCAAAGAATACAGACATAATGAATTATTGTTTGATTTCAAGTCGTTCTATTATCATCCTATGCTGACAACTGCATTGACTACTTTTGAGTCTGAAGCTTCAAAGATATTCACCGGTAAAAAGTTTAAAGATGTCAAAAAGGCGATAGAGGATGTTGTTGCATTATCAGTCATTGAACGAGATGAAGATGAGGATGGAAACATTGTCATTTTCAAGGTTAATGTATTTGGCAAAAAAGATGTAGCTTTTTCGGTATACCTTGACAAGTTGCAGACTAAATTTTTATGTGATTGTAGACGCTTTGAACGCAGAGGACTGCCATGTTCCCACATTATTTGTGCCATGAAGTATGACAACATGGATGTGTTTCCTGAAAGTCTGATTTGCAAGAGATGGACAAAGACTGCAAAGAATGATCACATCTCGTCATTTGCCTCCCAAGAAGGTAATGATGAAAAAATGACCATGTTTCGTCGAGGGGCACTTGCCGCTGCGTTCAATAGTCTATGTAATGTTTCGTGTAAGAGCGCAAGTGATTATAAGGAGGCTCTAGAAGGGATTTATAGTCTGTGTAATAAGATAAATAGCCGTCATGAGGGAAATGGACATGACAAGGATAAGGGCAGTAAATTTGTTGCGAGTGATAAGGCCAACAAATTTGTTGCGAATGATCCACTGATGGTGAATGTCAAAGGTGCCCGTAGGAGTAAAAAGTCAACACCGAGGACAAGATGTTGTTCTAATTGTAGAAATCCTGGGCACACAATACGGACGTGTCCAGAACTTGCTGGAATTGGTGTCGTGTCTGAAGATCAAGGGGAGAAGGCTTCACCTATTGAGTCTGATAATGAATCAAAAAGTTTAAGTCTGTCTATGAGTAATGATATAAATGATGACATCCACTCTGTAGCAGTGTCAAATGGTGGACGAGATGTTGAGAAAAGCACTGGTATTACACGTAAGAGGGAATGTGACAATGTTGCATTTTCAACACAAGACTCTGTCAACAAAAGAAAAACAAAAACAAATACAAGCACTAGAAAGGGTGATGCTTGTGTGACTCCAAATATCACAATCAACATTGATAATAATGGTGTGACCCGTGACTTTGGACATGAAAAATCTACTCTCAAACAAGACAGCCATTGTGCAAGTTGGAACCATAATGTTGGGTATGGTGTTAATTATTTTAATATGCACTATGGGCTGCCAAATAATGGTGGATCAATTTTTCCACAATTCCCTCCGACAACTACCCTCTCATCACATTCTAACACTGCTCTGCATACTGGAACACACAATGTTCCGAGTTATACACCGTTTATGAGTGCGTTGAAGAATGTGGAGCTGTTAGCAAAACATCGCAGTGACTATTGTGGACCAAAACATTGA
Protein sequence

>Msa0384790

MSTYSEATLPFDVYSDTDEVEFNSVNDIDTDSDTDGVEFNSVNDVDTDSDTEDIKVNSNNDVRIDGDADGVEFNHGNGVCNEQGKENFDGYKCISDVTNDDIRDMEFNTEDEAIKFYVLFAKYHWFEVRKDDVKRDSNGNIIMRQLVCNKEGVNDGKNKKNGSRSTLTIRTNCSAKLRVVYDFVRTIWRVSVFKPSHNHELAPLRFVHLMPNYSKLSEVDKQVASGLHSQGVRTCHILGFLMGQKGGHEGLGFIKKDLYNFTDHQARVKIQDGDTFATLSYFQGKADTDTSFFSEFTFTDDGRLENIFWADSTSRFDYECFGDVVAFDTTYRKNKYGKPLVIFSGYNHHGETTIFACALICDETIETYKWVLNLFSKAMYDKHPKAVITDGDKSMRKAIRVVFPNTRHHLCAWHLHRNVVQHVKNSKFLEEFKSLMYSPCTPEKFESEWKRVVENFDLSNNRWVKKIYRLKRMWASAYMRDHFLCGVRTTSICEGVNSFIKKYVRHKNSLVDFLHNFERALKEYRHNELLFDFKSFYYHPMLTTALTTFESEASKIFTGKKFKDVKKAIEDVVALSVIERDEDEDGNIVIFKVNVFGKKDVAFSVYLDKLQTKFLCDCRRFERRGLPCSHIICAMKYDNMDVFPESLICKRWTKTAKNDHISSFASQEGNDEKMTMFRRGALAAAFNSLCNVSCKSASDYKEALEGIYSLCNKINSRHEGNGHDKDKGSKFVASDKANKFVANDPLMVNVKGARRSKKSTPRTRCCSNCRNPGHTIRTCPELAGIGVVSEDQGEKASPIESDNESKSLSLSMSNDINDDIHSVAVSNGGRDVEKSTGITRKRECDNVAFSTQDSVNKRKTKTNTSTRKGDACVTPNITINIDNNGVTRDFGHEKSTLKQDSHCASWNHNVGYGVNYFNMHYGLPNNGGSIFPQFPPTTTLSSHSNTALHTGTHNVPSYTPFMSALKNVELLAKHRSDYCGPKH*