AlfalfaGEDB | Msa0386570

M. sativa cultivar zhongmu-4 / Msa0386570

KEGG: K04730|K04733|K11649
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0386570	AES74157.1	95.890	511	19	2	219	727	147	657	0.0	937

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0386570	sp\|Q9XI96\|PERK7_ARATH	58.802	551	191	10	188	705	135	682	0.0	575

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0386570	G7J6J8	95.890	511	19	2	219	727	147	657	0.0	937

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0386570	MtrunA17_Chr3g0144481	96.070	458	17	1	271	727	1	458	0.0	912
Msa0386570	MtrunA17_Chr6g0485761	55.725	524	181	8	220	712	147	650	0.0	547
Msa0386570	MtrunA17_Chr8g0373501	48.563	661	268	19	74	681	19	660	1.29e-175	518
Msa0386570	MtrunA17_Chr5g0403891	49.919	621	259	13	90	695	8	591	7.99e-158	470
Msa0386570	MtrunA17_Chr7g0221191	44.283	621	285	12	92	711	172	732	3.09e-155	468
Msa0386570	MtrunA17_Chr0c01g0489481	48.606	502	209	7	187	688	197	649	9.16e-142	430
Msa0386570	MtrunA17_Chr5g0413511	54.400	375	146	5	344	718	44	393	4.50e-140	417
Msa0386570	MtrunA17_Chr6g0485721	59.524	336	128	4	344	678	83	411	2.30e-135	405
Msa0386570	MtrunA17_Chr8g0389251	48.805	293	145	2	347	638	392	680	5.89e-97	314
Msa0386570	MtrunA17_Chr8g0341881	50.680	294	140	3	347	639	393	682	2.67e-95	312

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0386570	AT1G49270.1	58.802	551	191	10	188	705	135	682	0.0	575
Msa0386570	AT4G34440.2	52.412	622	212	14	141	713	80	666	0.0	570
Msa0386570	AT4G34440.1	52.412	622	212	14	141	713	80	666	0.0	570
Msa0386570	AT2G18470.1	60.759	474	163	7	216	681	147	605	0.0	563
Msa0386570	AT2G18470.3	60.759	474	163	7	216	681	147	605	0.0	563
Msa0386570	AT2G18470.2	60.759	474	163	7	216	681	147	605	0.0	563
Msa0386570	AT1G52290.1	65.110	364	121	5	344	703	128	489	2.43e-168	494
Msa0386570	AT3G18810.1	59.920	499	174	8	218	697	184	675	4.14e-166	495
Msa0386570	AT3G24540.1	67.273	330	105	3	328	657	153	479	1.89e-158	467
Msa0386570	AT1G70460.1	49.802	506	214	9	213	712	226	697	1.31e-157	473

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Find 229 sgRNAs with CRISPR-Local

Find 411 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTGTTGGGTCAAGGT+GGG	0.604102	3_1:+90336357	Msa0386570:CDS
AAAAGGGCAGGAGGAGGAGG+AGG	0.376181	3_1:-90333847	None:intergenic
AAACAAAACCTGTTGGGTCA+AGG	0.569218	3_1:+90336353	Msa0386570:CDS
AAAGACACCTCCGCATCAGG+TGG	0.630737	3_1:+90336190	Msa0386570:CDS
AAAGTTCAGGAAACTAGCAT+TGG	0.548527	3_1:+90338048	Msa0386570:CDS
AAATAGGATCATATCATATC+AGG	0.378383	3_1:-90338219	None:intergenic
AAATCATCACACTCGAACAA+CGG	0.594714	3_1:+90334517	Msa0386570:CDS
AAATCTGATGTCTTCTCGTA+TGG	0.541278	3_1:+90337409	Msa0386570:CDS
AACAATACAAATGAAAACAA+TGG	0.538752	3_1:+90334541	Msa0386570:CDS
AACCAGGATGGAGTGAAACC+TGG	0.567454	3_1:+90337959	Msa0386570:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTAATGTTACCTTACCTTA+GGG	-	chr3_1:90333879-90333898	None:intergenic	30.0%
ATGTAATGTTACCTTACCTT+AGG	-	chr3_1:90333880-90333899	None:intergenic	30.0%
TGATCATGTATCTTATTGCA+TGG	-	chr3_1:90333962-90333981	None:intergenic	30.0%
TTGTACATATAATGCAGAGT+AGG	-	chr3_1:90334636-90334655	None:intergenic	30.0%
TATATATATATACCGTGTGC+TGG	-	chr3_1:90334703-90334722	None:intergenic	30.0%
TTATCAATCCCTAGTCATAA+AGG	+	chr3_1:90335013-90335032	Msa0386570:intron	30.0%
AGTTATAATATTACGGCTCA+GGG	-	chr3_1:90335205-90335224	None:intergenic	30.0%
AAGTTATAATATTACGGCTC+AGG	-	chr3_1:90335206-90335225	None:intergenic	30.0%
TGAAGCCTGTTAATGTTTAT+TGG	+	chr3_1:90335401-90335420	Msa0386570:intron	30.0%
AAAGGCCAATAAACATTAAC+AGG	-	chr3_1:90335409-90335428	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	90333766	90338420	90333766	ID=Msa0386570;Name=Msa0386570
chr3_1	mRNA	90333766	90338420	90333766	ID=Msa0386570-mRNA-1;Parent=Msa0386570;Name=Msa0386570-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|0.75\|0.66\|0.88\|1\|1\|9\|204\|727
chr3_1	exon	90333766	90333882	90333766	ID=Msa0386570-mRNA-1:exon:24923;Parent=Msa0386570-mRNA-1
chr3_1	exon	90334031	90334709	90334031	ID=Msa0386570-mRNA-1:exon:24924;Parent=Msa0386570-mRNA-1
chr3_1	exon	90336069	90336608	90336069	ID=Msa0386570-mRNA-1:exon:24925;Parent=Msa0386570-mRNA-1
chr3_1	exon	90336705	90336791	90336705	ID=Msa0386570-mRNA-1:exon:24926;Parent=Msa0386570-mRNA-1
chr3_1	exon	90337033	90337103	90337033	ID=Msa0386570-mRNA-1:exon:24927;Parent=Msa0386570-mRNA-1
chr3_1	exon	90337183	90337259	90337183	ID=Msa0386570-mRNA-1:exon:24928;Parent=Msa0386570-mRNA-1
chr3_1	exon	90337366	90337513	90337366	ID=Msa0386570-mRNA-1:exon:24929;Parent=Msa0386570-mRNA-1
chr3_1	exon	90337627	90337788	90337627	ID=Msa0386570-mRNA-1:exon:24930;Parent=Msa0386570-mRNA-1
chr3_1	exon	90337914	90338420	90337914	ID=Msa0386570-mRNA-1:exon:24931;Parent=Msa0386570-mRNA-1
chr3_1	CDS	90333766	90333882	90333766	ID=Msa0386570-mRNA-1:cds;Parent=Msa0386570-mRNA-1
chr3_1	CDS	90334031	90334709	90334031	ID=Msa0386570-mRNA-1:cds;Parent=Msa0386570-mRNA-1
chr3_1	CDS	90336069	90336608	90336069	ID=Msa0386570-mRNA-1:cds;Parent=Msa0386570-mRNA-1
chr3_1	CDS	90336705	90336791	90336705	ID=Msa0386570-mRNA-1:cds;Parent=Msa0386570-mRNA-1
chr3_1	CDS	90337033	90337103	90337033	ID=Msa0386570-mRNA-1:cds;Parent=Msa0386570-mRNA-1
chr3_1	CDS	90337183	90337259	90337183	ID=Msa0386570-mRNA-1:cds;Parent=Msa0386570-mRNA-1
chr3_1	CDS	90337366	90337513	90337366	ID=Msa0386570-mRNA-1:cds;Parent=Msa0386570-mRNA-1
chr3_1	CDS	90337627	90337788	90337627	ID=Msa0386570-mRNA-1:cds;Parent=Msa0386570-mRNA-1
chr3_1	CDS	90337914	90338216	90337914	ID=Msa0386570-mRNA-1:cds;Parent=Msa0386570-mRNA-1
chr3_1	three_prime_UTR	90338217	90338420	90338217	ID=Msa0386570-mRNA-1:three_prime_utr;Parent=Msa0386570-mRNA-1

Gene Sequence

>Msa0386570

ATGACTTGGAAAAGAAACACGTTTTCTGGGTGTATCTATTACCATGCACATTCACCTTGGTCATCGCTTTCTTTTGAGAATCCTCCTCCTCCTCCTGCCCTTTTCTCTCACCCTAAGGCAGACTTGAGAATACATGATCGGGGTCAATATTTGAGGGAGCTGAGTGTGACTTCTCCGGATCATTCTTTAATTTATAACAATATGTCTTCTATTTCACAAGAATCTTCTCCAGGACCAGACGCTGAAAATTCGTCTCCACCGGATTCATCATCATCACAATCCCCACCGCCACCAACACCAGAAGCTGAAAATTCATCTCCTCCACCTTCACTCTCACCACCACCCTCATCACCACCACCATCATCTCCACCGCCACAATCACCTCCTCCATCGTCTCCATCGCCATCTTCCCCTCCTCCATCTTCTCCGTCTCCGACCCCACCTTCTAACTCTTCCCCATCTCAACCATCACAATCACCACCACCACCACCGCCGCCGCCACCACAGTCATCACAAGGTCCACCTAACAACACACCATTGCCTCCAAACCGGGATGCCTTTTCTCCTCCTCCTCCTCCTCCTCCGGCATCACATCATCATCATAAATCATCACACTCGAACAACGGCAACAATACAAATGAAAACAATGGGAATCAATTGAGCGTGGGTGGTATAATAGCAGTTGCAGGTGCAGCTTGTATAATCCTCCTTGTCATTATCCTACTCTGCATTATATGTACAAGAAGAAAGAAGAGACAACCTCATCACATTCATTACTACCCTACTCCAGCACACGGTCCAAATCAGTATATGTACAGCAACGGTGAGCATGTGCTTAATATTCCTCCACCAACTCAAGGTGGAGGTTGGGGTTCAACACCTCCAAAAAAGACACCTCCAAAAATGACACCTTCAAAAAAGACACCTCCGCATCAGGTGGTTAGTAGCGAATTGAGCAATTCCAGTTACTCTGGCCCAGCAGATCCTGTATTGCCACCACCACACCCAACAGTTGCACTTGGGTTCAACCAGAGCTCATTCAGTTATGAAGAGTTATCAACTGCCACTGGTGCGTTTTCAAAACAAAACCTGTTGGGTCAAGGTGGGTTTGGATATGTACATAAAGGTATTCTCCCTAATGGTAAGGAAATAGCAGTGAAGAGCCTTAAATCAACTGGTGGACAAGGTGACAGAGAATTTCAAGCTGAGGTTGATACTATCAGCCGTGTACATCATCGCTATCTTGTCTCCCTTGTTGGCTATTGCATTTCTGAATCTAAAAAGCTTCTCGTTTATGAATTTGTTCCCAACAAGACCCTTGATTATCACCTTCATGGAAAGGGTCGACCTGTGATGGATTGGGCCACAAGACTTAAAATTGCGGTTGGATCCGCGAAAGGACTTGCTTATTTACATGAGGACTGTCACCCTAGAATCATTCACCGAGACATCAAGGGTGCAAACATTCTAATTGAAAACAACTTTGAAGCCAAAGTGGCAGATTTTGGATTAGCAAAATTTACTCAAGACACTAACACTCATGTTTCTACTCGTGTGATGGGAACATTTGGGTACATGGCTCCTGAGTATGCATCAAGTGGTAAGCTAACTGATAAATCTGATGTCTTCTCGTATGGTGTTGTGCTTTTGGAGCTCATAACAGGACGACGGCCAGTTGGTACCGCCAGTGATTATGAGGAAGATAGTTTGGTTGATTGGGCTAGACCACTTTGTTCAAAAGCACTGGAATATGGAATATTTCTTGGATTGGTGGATCCACGTTTAGAGGAAAATTATGAGAAACAAGAGATGACACGTATGGTAGCTTGTGCTTCTGCTTGTGTTAGGCACTCAGGAAGAAGGCGTCCAAGAATGAGCCAAATTGTACGGGTACTGGAAGGAGATGCTTCACTAGAAGTGCTTATAAACCAGGATGGAGTGAAACCTGGACAGAGTGCTATGTACAGTAGCGCAAGTGGAGATTATGATGCAGGGACATACAGTGCTGACATGAAAAAGTTCAGGAAACTAGCATTGGAGAGTGGCACAGGGAGCAGCGAGTACGGTGCAACTAGTGAGTATGGACTCAACCTTTCGGCCTCGAGCAGTGATCAATCTTCTGCTGATTATACTAGGAGGACGGTAACTGGAACTGGAGGCAGACCAGGATTCCATGAAAAATAA

Protein sequence

>Msa0386570

MTWKRNTFSGCIYYHAHSPWSSLSFENPPPPPALFSHPKADLRIHDRGQYLRELSVTSPDHSLIYNNMSSISQESSPGPDAENSSPPDSSSSQSPPPPTPEAENSSPPPSLSPPPSSPPPSSPPPQSPPPSSPSPSSPPPSSPSPTPPSNSSPSQPSQSPPPPPPPPPQSSQGPPNNTPLPPNRDAFSPPPPPPPASHHHHKSSHSNNGNNTNENNGNQLSVGGIIAVAGAACIILLVIILLCIICTRRKKRQPHHIHYYPTPAHGPNQYMYSNGEHVLNIPPPTQGGGWGSTPPKKTPPKMTPSKKTPPHQVVSSELSNSSYSGPADPVLPPPHPTVALGFNQSSFSYEELSTATGAFSKQNLLGQGGFGYVHKGILPNGKEIAVKSLKSTGGQGDREFQAEVDTISRVHHRYLVSLVGYCISESKKLLVYEFVPNKTLDYHLHGKGRPVMDWATRLKIAVGSAKGLAYLHEDCHPRIIHRDIKGANILIENNFEAKVADFGLAKFTQDTNTHVSTRVMGTFGYMAPEYASSGKLTDKSDVFSYGVVLLELITGRRPVGTASDYEEDSLVDWARPLCSKALEYGIFLGLVDPRLEENYEKQEMTRMVACASACVRHSGRRRPRMSQIVRVLEGDASLEVLINQDGVKPGQSAMYSSASGDYDAGTYSADMKKFRKLALESGTGSSEYGATSEYGLNLSASSSDQSSADYTRRTVTGTGGRPGFHEK*