Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386700 | XP_039682898.1 | 82.252 | 817 | 64 | 4 | 1 | 762 | 1 | 791 | 0.0 | 1341 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386700 | sp|Q9SZL8|FRS5_ARATH | 29.278 | 263 | 160 | 7 | 50 | 308 | 72 | 312 | 8.27e-23 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386700 | A0A2Z6PJC0 | 68.873 | 710 | 124 | 10 | 81 | 748 | 1 | 655 | 0.0 | 934 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0386700 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386700 | MtrunA17_Chr3g0088371 | 82.609 | 184 | 29 | 1 | 582 | 762 | 1 | 184 | 1.76e-102 | 313 |
| Msa0386700 | MtrunA17_Chr1g0172971 | 76.515 | 132 | 16 | 1 | 1 | 132 | 1 | 117 | 3.03e-57 | 204 |
| Msa0386700 | MtrunA17_Chr6g0475591 | 95.890 | 73 | 3 | 0 | 204 | 276 | 1 | 73 | 1.71e-42 | 148 |
| Msa0386700 | MtrunA17_Chr3g0082121 | 26.569 | 478 | 250 | 11 | 57 | 460 | 49 | 499 | 4.63e-38 | 151 |
| Msa0386700 | MtrunA17_Chr3g0082121 | 29.630 | 135 | 86 | 3 | 558 | 691 | 529 | 655 | 1.37e-12 | 71.2 |
| Msa0386700 | MtrunA17_Chr7g0258861 | 32.090 | 268 | 160 | 5 | 46 | 310 | 2 | 250 | 6.49e-37 | 140 |
| Msa0386700 | MtrunA17_Chr2g0324011 | 28.037 | 321 | 184 | 7 | 52 | 369 | 8 | 284 | 8.10e-31 | 128 |
| Msa0386700 | MtrunA17_Chr2g0324011 | 25.595 | 168 | 119 | 3 | 307 | 472 | 322 | 485 | 3.86e-16 | 82.4 |
| Msa0386700 | MtrunA17_Chr1g0202341 | 30.651 | 261 | 156 | 6 | 50 | 308 | 50 | 287 | 7.08e-27 | 117 |
| Msa0386700 | MtrunA17_Chr5g0448761 | 28.102 | 274 | 175 | 8 | 40 | 308 | 47 | 303 | 1.55e-22 | 103 |
| Msa0386700 | MtrunA17_Chr5g0448761 | 26.277 | 137 | 90 | 3 | 557 | 692 | 566 | 692 | 2.50e-11 | 67.4 |
| Msa0386700 | MtrunA17_Chr1g0203721 | 25.641 | 312 | 194 | 8 | 13 | 310 | 18 | 305 | 2.84e-22 | 102 |
| Msa0386700 | MtrunA17_Chr8g0363841 | 26.488 | 336 | 192 | 12 | 56 | 386 | 22 | 307 | 3.80e-22 | 102 |
| Msa0386700 | MtrunA17_Chr8g0363841 | 29.193 | 161 | 109 | 3 | 311 | 470 | 334 | 490 | 3.93e-11 | 66.6 |
| Msa0386700 | MtrunA17_Chr1g0164591 | 31.707 | 164 | 103 | 2 | 147 | 310 | 1 | 155 | 5.10e-21 | 95.1 |
| Msa0386700 | MtrunA17_Chr2g0296781 | 25.455 | 330 | 184 | 9 | 55 | 377 | 1 | 275 | 5.68e-21 | 98.2 |
| Msa0386700 | MtrunA17_Chr2g0290391 | 23.306 | 605 | 383 | 22 | 54 | 624 | 54 | 611 | 3.42e-17 | 86.3 |
| Msa0386700 | MtrunA17_Chr5g0441581 | 25.940 | 266 | 161 | 8 | 39 | 304 | 25 | 254 | 7.76e-17 | 85.1 |
| Msa0386700 | MtrunA17_Chr2g0287651 | 25.510 | 294 | 194 | 6 | 21 | 310 | 45 | 317 | 9.79e-17 | 85.1 |
| Msa0386700 | MtrunA17_Chr6g0458391 | 27.059 | 255 | 147 | 6 | 57 | 310 | 231 | 447 | 4.93e-16 | 82.4 |
| Msa0386700 | MtrunA17_Chr1g0203051 | 23.887 | 247 | 165 | 4 | 66 | 310 | 94 | 319 | 6.90e-15 | 78.6 |
| Msa0386700 | MtrunA17_Chr1g0196541 | 25.194 | 258 | 165 | 6 | 55 | 310 | 1 | 232 | 9.04e-15 | 78.6 |
| Msa0386700 | MtrunA17_Chr6g0477261 | 27.624 | 181 | 103 | 3 | 196 | 374 | 7 | 161 | 1.06e-14 | 78.2 |
| Msa0386700 | MtrunA17_Chr2g0291591 | 25.796 | 314 | 173 | 13 | 14 | 310 | 29 | 299 | 7.39e-14 | 75.1 |
| Msa0386700 | MtrunA17_Chr1g0198761 | 25.448 | 279 | 182 | 7 | 56 | 326 | 52 | 312 | 3.41e-13 | 73.6 |
| Msa0386700 | MtrunA17_Chr1g0207551 | 32.558 | 129 | 70 | 3 | 557 | 682 | 527 | 641 | 5.14e-13 | 72.8 |
| Msa0386700 | MtrunA17_Chr3g0080351 | 29.480 | 173 | 98 | 5 | 544 | 712 | 548 | 700 | 1.11e-12 | 71.6 |
| Msa0386700 | MtrunA17_Chr5g0431001 | 25.448 | 279 | 182 | 9 | 56 | 326 | 66 | 326 | 2.43e-12 | 70.1 |
| Msa0386700 | MtrunA17_Chr2g0276841 | 23.904 | 251 | 167 | 7 | 65 | 310 | 84 | 315 | 2.50e-12 | 70.5 |
| Msa0386700 | MtrunA17_Chr2g0329031 | 24.615 | 260 | 155 | 8 | 57 | 310 | 20 | 244 | 3.00e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386700 | AT4G38180.1 | 29.278 | 263 | 160 | 7 | 50 | 308 | 72 | 312 | 8.40e-24 | 107 |
| Msa0386700 | AT5G28530.3 | 23.153 | 609 | 375 | 24 | 56 | 624 | 60 | 615 | 1.67e-18 | 90.9 |
| Msa0386700 | AT5G28530.2 | 23.153 | 609 | 375 | 24 | 56 | 624 | 60 | 615 | 1.67e-18 | 90.9 |
| Msa0386700 | AT4G15090.1 | 31.551 | 187 | 108 | 5 | 557 | 737 | 547 | 719 | 1.03e-16 | 85.1 |
| Msa0386700 | AT4G15090.5 | 31.551 | 187 | 108 | 5 | 557 | 737 | 547 | 719 | 1.03e-16 | 85.1 |
| Msa0386700 | AT4G15090.3 | 31.551 | 187 | 108 | 5 | 557 | 737 | 547 | 719 | 1.03e-16 | 85.1 |
| Msa0386700 | AT4G15090.2 | 31.551 | 187 | 108 | 5 | 557 | 737 | 547 | 719 | 1.03e-16 | 85.1 |
| Msa0386700 | AT4G15090.4 | 31.551 | 187 | 108 | 5 | 557 | 737 | 547 | 719 | 1.03e-16 | 85.1 |
| Msa0386700 | AT5G28530.1 | 25.000 | 260 | 165 | 6 | 56 | 303 | 60 | 301 | 9.53e-14 | 75.5 |
| Msa0386700 | AT2G27110.3 | 27.128 | 188 | 124 | 5 | 577 | 761 | 392 | 569 | 1.94e-11 | 68.2 |
| Msa0386700 | AT2G27110.2 | 27.128 | 188 | 124 | 5 | 577 | 761 | 537 | 714 | 1.97e-11 | 68.2 |
| Msa0386700 | AT2G27110.1 | 27.128 | 188 | 124 | 5 | 577 | 761 | 537 | 714 | 1.97e-11 | 68.2 |
| Msa0386700 | AT1G10240.2 | 22.925 | 253 | 167 | 8 | 65 | 310 | 62 | 293 | 3.86e-11 | 67.0 |
| Msa0386700 | AT1G10240.1 | 22.925 | 253 | 167 | 8 | 65 | 310 | 62 | 293 | 3.86e-11 | 67.0 |
| Msa0386700 | AT4G19990.1 | 37.113 | 97 | 51 | 3 | 557 | 653 | 440 | 526 | 4.61e-11 | 67.0 |
| Msa0386700 | AT4G19990.3 | 37.113 | 97 | 51 | 3 | 557 | 653 | 497 | 583 | 4.67e-11 | 67.0 |
| Msa0386700 | AT4G19990.4 | 37.113 | 97 | 51 | 3 | 557 | 653 | 497 | 583 | 4.67e-11 | 67.0 |
| Msa0386700 | AT4G19990.5 | 37.113 | 97 | 51 | 3 | 557 | 653 | 497 | 583 | 4.70e-11 | 67.0 |
| Msa0386700 | AT4G19990.6 | 37.113 | 97 | 51 | 3 | 557 | 653 | 497 | 583 | 5.16e-11 | 66.6 |
| Msa0386700 | AT4G19990.2 | 37.113 | 97 | 51 | 3 | 557 | 653 | 497 | 583 | 5.16e-11 | 66.6 |
| Msa0386700 | AT4G19990.7 | 37.113 | 97 | 51 | 3 | 557 | 653 | 511 | 597 | 5.31e-11 | 66.6 |
Find 112 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 3_1:+90477803 | Msa0386700:CDS |
| AGTCGCTTCTTTGACTTAAT+TGG | 0.149305 | 3_1:-90478763 | None:intergenic |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 3_1:+90477761 | Msa0386700:CDS |
| TTCTTTGACTTAATTGGATT+TGG | 0.266522 | 3_1:-90478757 | None:intergenic |
| TCTGTTGTTGGCCTGTTGTT+AGG | 0.292589 | 3_1:-90476126 | None:intergenic |
| CGATCATGATCTTCAAAACT+TGG | 0.305304 | 3_1:-90478241 | None:intergenic |
| TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 3_1:-90476317 | None:intergenic |
| GCCTTCGAATGTTGATGTTT+TGG | 0.322848 | 3_1:+90478052 | Msa0386700:CDS |
| GCCTTCGAATGTTGATGTTT+TGG | 0.322848 | 3_1:+90478192 | Msa0386700:CDS |
| CAACTAGATTATTCTCTATT+CGG | 0.323831 | 3_1:+90476633 | Msa0386700:CDS |
| TTGAAGATCTTGGAGTTCTT+AGG | 0.331625 | 3_1:+90478361 | Msa0386700:CDS |
| GCATACGATTTGCGTAAGTT+TGG | 0.338878 | 3_1:-90477617 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 3_1:-90476683 | None:intergenic |
| CTCGACGGTGTTCTTGAAGC+TGG | 0.383392 | 3_1:+90478601 | Msa0386700:CDS |
| TTTGTTTCTTCCGATTGATA+AGG | 0.384635 | 3_1:-90478825 | None:intergenic |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 3_1:+90476690 | Msa0386700:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 3_1:+90476682 | Msa0386700:CDS |
| GAGAACGTCTTATGAAGTTA+TGG | 0.394356 | 3_1:+90476392 | Msa0386700:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 3_1:-90478739 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 3_1:+90477935 | Msa0386700:CDS |
| GAAGGCCTACCTCAGACTTT+AGG | 0.402909 | 3_1:+90477586 | Msa0386700:CDS |
| CATGTCGTATGTTTGAGAAC+AGG | 0.415108 | 3_1:+90478317 | Msa0386700:CDS |
| GTCTTATGAAGTTATGGGTC+AGG | 0.415385 | 3_1:+90476398 | Msa0386700:CDS |
| GAAGTTATGGGTCAGGGAGT+TGG | 0.426260 | 3_1:+90476405 | Msa0386700:CDS |
| CGTTATGTTTGTAACAAAGA+AGG | 0.427485 | 3_1:+90476078 | Msa0386700:CDS |
| GCTGTTGGTGAAACATCTGC+TGG | 0.428855 | 3_1:+90478700 | Msa0386700:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 3_1:+90476330 | Msa0386700:CDS |
| TTGATATCGTTGTGCTTGAC+TGG | 0.433430 | 3_1:-90478509 | None:intergenic |
| GCTACGTTTGAAGACTTAGA+TGG | 0.436172 | 3_1:-90478676 | None:intergenic |
| GAGGAGTTGCTTCTTTCTAA+AGG | 0.437852 | 3_1:+90478634 | Msa0386700:CDS |
| TCCATGATTCTTTATTGCTA+GGG | 0.444266 | 3_1:-90475915 | None:intergenic |
| TTCCATGATTCTTTATTGCT+AGG | 0.445442 | 3_1:-90475916 | None:intergenic |
| TTCTTTGAACTTTGGTGCGG+TGG | 0.447203 | 3_1:-90478731 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 3_1:+90476195 | Msa0386700:CDS |
| TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | 3_1:+90477635 | Msa0386700:CDS |
| ATGTGTATAAGATATATAGA+TGG | 0.452819 | 3_1:+90476247 | Msa0386700:CDS |
| ACATCAACTTCATCTGATAG+TGG | 0.459514 | 3_1:+90475790 | Msa0386700:CDS |
| CTTGCTTTGCATTTATTCAC+AGG | 0.460007 | 3_1:+90477901 | Msa0386700:CDS |
| GCTCTTATAAATTCTAAAGC+TGG | 0.462891 | 3_1:+90476360 | Msa0386700:CDS |
| GACCGCATCAGCTGACTGTT+GGG | 0.463150 | 3_1:-90477855 | None:intergenic |
| ACCTGTGGACTGTCTGTTGT+TGG | 0.465317 | 3_1:-90476138 | None:intergenic |
| AGAACGTCTTATGAAGTTAT+GGG | 0.466325 | 3_1:+90476393 | Msa0386700:CDS |
| GTTTACTTAATCCTAACAAC+AGG | 0.470860 | 3_1:+90476115 | Msa0386700:CDS |
| GGCAGAAATTCCTTATCAAT+CGG | 0.471938 | 3_1:+90478815 | Msa0386700:CDS |
| ATCATGATCGATTTGATGAA+AGG | 0.476999 | 3_1:+90478254 | Msa0386700:CDS |
| GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | 3_1:+90477634 | Msa0386700:CDS |
| TTTAAGTCTGAAAACCGAAA+AGG | 0.483010 | 3_1:-90476444 | None:intergenic |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 3_1:-90477937 | None:intergenic |
| CTTTCTAAAGGTATTCGTAC+AGG | 0.486879 | 3_1:+90478646 | Msa0386700:CDS |
| GATCATGATCTTCAAAACTT+GGG | 0.487945 | 3_1:-90478240 | None:intergenic |
| TTGAAGACTTAGATGGCGTC+GGG | 0.488261 | 3_1:-90478669 | None:intergenic |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 3_1:+90477951 | Msa0386700:CDS |
| GTCTTCAGTGCCAACATTGA+CGG | 0.491796 | 3_1:-90478485 | None:intergenic |
| CTGTTGGTGAAACATCTGCT+GGG | 0.493682 | 3_1:+90478701 | Msa0386700:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 3_1:+90477775 | Msa0386700:CDS |
| CCCCTAGCAATAAAGAATCA+TGG | 0.497001 | 3_1:+90475914 | Msa0386700:CDS |
| TGAATAAATGCAAAGCAAGA+AGG | 0.503349 | 3_1:-90477897 | None:intergenic |
| TCTTTGAACTTTGGTGCGGT+GGG | 0.503874 | 3_1:-90478730 | None:intergenic |
| TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 3_1:-90476189 | None:intergenic |
| AGCTGGAATATATTTGAAGC+TGG | 0.507410 | 3_1:+90476212 | Msa0386700:CDS |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 3_1:+90477794 | Msa0386700:CDS |
| ACAAAACAAGAAATCTGATA+AGG | 0.511435 | 3_1:+90476044 | Msa0386700:CDS |
| CTAAGGTAACACGAATGCTC+TGG | 0.517941 | 3_1:-90476300 | None:intergenic |
| GAATAAATGCAAAGCAAGAA+GGG | 0.521406 | 3_1:-90477896 | None:intergenic |
| GTCAGCATGAATCATTGCTA+GGG | 0.522802 | 3_1:-90475875 | None:intergenic |
| GGTAATTATGCATATAACAC+TGG | 0.523547 | 3_1:+90475982 | Msa0386700:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 3_1:+90476089 | Msa0386700:CDS |
| TAAGATATATAGATGGGATG+TGG | 0.528498 | 3_1:+90476254 | Msa0386700:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 3_1:-90477932 | None:intergenic |
| GAATGCTCTGGTTTATGTAA+TGG | 0.534744 | 3_1:-90476288 | None:intergenic |
| CCATGATTCTTTATTGCTAG+GGG | 0.537011 | 3_1:-90475914 | None:intergenic |
| TGTCAGCATGAATCATTGCT+AGG | 0.540740 | 3_1:-90475876 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 3_1:+90477952 | Msa0386700:CDS |
| AATCGAACAAGTGAGTGGTC+TGG | 0.543268 | 3_1:-90477738 | None:intergenic |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 3_1:+90476090 | Msa0386700:CDS |
| CGCTTTAAAACATATTGTCT+AGG | 0.545689 | 3_1:-90478418 | None:intergenic |
| GTTATGGGTCAGGGAGTTGG+AGG | 0.547221 | 3_1:+90476408 | Msa0386700:CDS |
| AAGATCTTGGAGTTCTTAGG+TGG | 0.553166 | 3_1:+90478364 | Msa0386700:CDS |
| ATGTCGTATGTTTGAGAACA+GGG | 0.560861 | 3_1:+90478318 | Msa0386700:CDS |
| GGCCTACCTCAGACTTTAGG+TGG | 0.565384 | 3_1:+90477589 | Msa0386700:CDS |
| TTTGAAGACTTAGATGGCGT+CGG | 0.569630 | 3_1:-90478670 | None:intergenic |
| GGACCGCATCAGCTGACTGT+TGG | 0.570066 | 3_1:-90477856 | None:intergenic |
| TGAAGCTTTATCAGTGATTG+TGG | 0.572057 | 3_1:+90478858 | Msa0386700:CDS |
| ATCATGATCTTCAAAACTTG+GGG | 0.577988 | 3_1:-90478239 | None:intergenic |
| TCTTCAAACGTAGCTGCTGT+TGG | 0.578995 | 3_1:+90478685 | Msa0386700:CDS |
| ATGAAATCGACCGTCAATGT+TGG | 0.583819 | 3_1:+90478475 | Msa0386700:CDS |
| ATCCCAACAGTCAGCTGATG+CGG | 0.597403 | 3_1:+90477853 | Msa0386700:CDS |
| CTTACGCAAATCGTATGCAT+TGG | 0.597846 | 3_1:+90477622 | Msa0386700:CDS |
| TATGATGATGCTGATAATGA+CGG | 0.599988 | 3_1:+90478029 | Msa0386700:CDS |
| TATGATGATGCTGATAATGA+CGG | 0.599988 | 3_1:+90478169 | Msa0386700:CDS |
| TGTGTATAAGATATATAGAT+GGG | 0.601002 | 3_1:+90476248 | Msa0386700:CDS |
| TCACTGATTCATGCTGAGAG+TGG | 0.606950 | 3_1:+90475835 | Msa0386700:CDS |
| TCCAAAACATCAACATTCGA+AGG | 0.607058 | 3_1:-90478053 | None:intergenic |
| TCCAAAACATCAACATTCGA+AGG | 0.607058 | 3_1:-90478193 | None:intergenic |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 3_1:+90477938 | Msa0386700:CDS |
| TCTTATGAAGTTATGGGTCA+GGG | 0.609153 | 3_1:+90476399 | Msa0386700:CDS |
| GCCAACAACAGACAGTCCAC+AGG | 0.619933 | 3_1:+90476137 | Msa0386700:CDS |
| ATGATGATGCTGATAATGAC+GGG | 0.620534 | 3_1:+90478030 | Msa0386700:CDS |
| ATGATGATGCTGATAATGAC+GGG | 0.620534 | 3_1:+90478170 | Msa0386700:CDS |
| TTCACAAACTCAATAACCTG+TGG | 0.626760 | 3_1:-90476153 | None:intergenic |
| TGTTGGTGAAACATCTGCTG+GGG | 0.639082 | 3_1:+90478702 | Msa0386700:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 3_1:+90477776 | Msa0386700:CDS |
| GAAGCTTTATCAGTGATTGT+GGG | 0.649096 | 3_1:+90478859 | Msa0386700:CDS |
| GATTTCATCTTATCGACAGA+CGG | 0.652942 | 3_1:-90478460 | None:intergenic |
| GACAAGCCACCTAAAGTCTG+AGG | 0.653221 | 3_1:-90477595 | None:intergenic |
| TGTCGTATGTTTGAGAACAG+GGG | 0.653807 | 3_1:+90478319 | Msa0386700:CDS |
| TAAAGAATCGAACAAGTGAG+TGG | 0.654901 | 3_1:-90477743 | None:intergenic |
| TCTTTCTTTGAACTTTGGTG+CGG | 0.659854 | 3_1:-90478734 | None:intergenic |
| AATAAATGCAAAGCAAGAAG+GGG | 0.664515 | 3_1:-90477895 | None:intergenic |
| TCAGCATGAATCATTGCTAG+GGG | 0.681156 | 3_1:-90475874 | None:intergenic |
| AGCCACCTAAAGTCTGAGGT+AGG | 0.684957 | 3_1:-90477591 | None:intergenic |
| AGGGGTGTACTTGTTTACAA+CGG | 0.695086 | 3_1:-90477877 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGATGAGTTAAATAATT+TGG | + | chr3_1:90477494-90477513 | Msa0386700:CDS | 15.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | + | chr3_1:90475961-90475980 | Msa0386700:CDS | 20.0% |
| !! | ATGTGTATAAGATATATAGA+TGG | + | chr3_1:90476247-90476266 | Msa0386700:CDS | 20.0% |
| !! | TGTGTATAAGATATATAGAT+GGG | + | chr3_1:90476248-90476267 | Msa0386700:CDS | 20.0% |
| !! | TGAATATCATAGTAAAAAGA+TGG | - | chr3_1:90476561-90476580 | None:intergenic | 20.0% |
| !!! | TTAATTTCATTAAGTTGTTC+TGG | + | chr3_1:90476751-90476770 | Msa0386700:intron | 20.0% |
| !! | ACATACTTATTAGAATACTT+AGG | + | chr3_1:90476981-90477000 | Msa0386700:intron | 20.0% |
| !!! | TTCTTATAATTTGTGATTAC+AGG | + | chr3_1:90477044-90477063 | Msa0386700:intron | 20.0% |
| !!! | AATCAGATTTTGACTATAAT+TGG | + | chr3_1:90477535-90477554 | Msa0386700:CDS | 20.0% |
| !!! | ATCAGATTTTGACTATAATT+GGG | + | chr3_1:90477536-90477555 | Msa0386700:CDS | 20.0% |
| !!! | ATGATGATAAATTGTTTTGA+TGG | + | chr3_1:90477564-90477583 | Msa0386700:CDS | 20.0% |
| !! | ATAACACTGGATTTTCTATT+AGG | + | chr3_1:90475995-90476014 | Msa0386700:CDS | 25.0% |
| ! | ACAAAACAAGAAATCTGATA+AGG | + | chr3_1:90476044-90476063 | Msa0386700:CDS | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | + | chr3_1:90476595-90476614 | Msa0386700:CDS | 25.0% |
| ! | CAACTAGATTATTCTCTATT+CGG | + | chr3_1:90476633-90476652 | Msa0386700:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | + | chr3_1:90476682-90476701 | Msa0386700:CDS | 25.0% |
| ! | AGTAAAAAACACTAACCTAA+TGG | - | chr3_1:90476708-90476727 | None:intergenic | 25.0% |
| ! | TCTTACTTATTTGAACTACA+CGG | + | chr3_1:90476827-90476846 | Msa0386700:intron | 25.0% |
| !! | TTTAACCATGTTGTTTGTTT+AGG | + | chr3_1:90476851-90476870 | Msa0386700:intron | 25.0% |
| !! | TTAACCATGTTGTTTGTTTA+GGG | + | chr3_1:90476852-90476871 | Msa0386700:intron | 25.0% |
| ! | CAAACTTAAATGATGTTGAT+TGG | + | chr3_1:90476905-90476924 | Msa0386700:intron | 25.0% |
| !!! | ATTTATATTTTGAACTGCCT+AGG | + | chr3_1:90476929-90476948 | Msa0386700:intron | 25.0% |
| !! | TGTTGTATTTTGTTCTGATA+TGG | + | chr3_1:90477184-90477203 | Msa0386700:intron | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | - | chr3_1:90477229-90477248 | None:intergenic | 25.0% |
| !!! | TGATAAATTGTTTTGATGGA+AGG | + | chr3_1:90477568-90477587 | Msa0386700:CDS | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | chr3_1:90477761-90477780 | Msa0386700:CDS | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | - | chr3_1:90477935-90477954 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | + | chr3_1:90477935-90477954 | Msa0386700:CDS | 25.0% |
| !! | AACTTTGAAAAACTTCTCAA+AGG | - | chr3_1:90477982-90478001 | None:intergenic | 25.0% |
| !! | CAAAGTTTTCACAATTGATA+AGG | + | chr3_1:90477995-90478014 | Msa0386700:CDS | 25.0% |
| !! | AGAAAAATTTTAGATGACTC+TGG | - | chr3_1:90478583-90478602 | None:intergenic | 25.0% |
| !!! | TCATCTAAAATTTTTCTCGA+CGG | + | chr3_1:90478586-90478605 | Msa0386700:CDS | 25.0% |
| !! | TTCTTTGACTTAATTGGATT+TGG | - | chr3_1:90478760-90478779 | None:intergenic | 25.0% |
| ! | ATTATGAAAAAGCTAGAGAA+AGG | + | chr3_1:90478794-90478813 | Msa0386700:CDS | 25.0% |
| TCCATGATTCTTTATTGCTA+GGG | - | chr3_1:90475918-90475937 | None:intergenic | 30.0% | |
| TTCCATGATTCTTTATTGCT+AGG | - | chr3_1:90475919-90475938 | None:intergenic | 30.0% | |
| GGTAATTATGCATATAACAC+TGG | + | chr3_1:90475982-90476001 | Msa0386700:CDS | 30.0% | |
| CGTTATGTTTGTAACAAAGA+AGG | + | chr3_1:90476078-90476097 | Msa0386700:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | + | chr3_1:90476089-90476108 | Msa0386700:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | + | chr3_1:90476090-90476109 | Msa0386700:CDS | 30.0% | |
| GTTTACTTAATCCTAACAAC+AGG | + | chr3_1:90476115-90476134 | Msa0386700:CDS | 30.0% | |
| TAAGATATATAGATGGGATG+TGG | + | chr3_1:90476254-90476273 | Msa0386700:CDS | 30.0% | |
| TTACTTCTCGAAATGATCTA+AGG | - | chr3_1:90476320-90476339 | None:intergenic | 30.0% | |
| !! | GCTCTTATAAATTCTAAAGC+TGG | + | chr3_1:90476360-90476379 | Msa0386700:CDS | 30.0% |
| AGAACGTCTTATGAAGTTAT+GGG | + | chr3_1:90476393-90476412 | Msa0386700:CDS | 30.0% | |
| TTTAAGTCTGAAAACCGAAA+AGG | - | chr3_1:90476447-90476466 | None:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | - | chr3_1:90476686-90476705 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | chr3_1:90476690-90476709 | Msa0386700:CDS | 30.0% | |
| !!! | TAGTGTTTTTTACTTCTCTC+AGG | + | chr3_1:90476714-90476733 | Msa0386700:intron | 30.0% |
| CTTACTTATTTGAACTACAC+GGG | + | chr3_1:90476828-90476847 | Msa0386700:intron | 30.0% | |
| AAATCCCTAAACAAACAACA+TGG | - | chr3_1:90476859-90476878 | None:intergenic | 30.0% | |
| TAAGTTTGTCTCAAACCAAA+TGG | - | chr3_1:90476893-90476912 | None:intergenic | 30.0% | |
| TAAATTTCAGCTGCCTTTAT+TGG | + | chr3_1:90477213-90477232 | Msa0386700:intron | 30.0% | |
| AAAACACCTGGAAAACTATT+CGG | - | chr3_1:90477402-90477421 | None:intergenic | 30.0% | |
| GAGAATGCAAAGAAAAATCT+TGG | + | chr3_1:90477450-90477469 | Msa0386700:intron | 30.0% | |
| AATAAATGCAAAGCAAGAAG+GGG | - | chr3_1:90477898-90477917 | None:intergenic | 30.0% | |
| GAATAAATGCAAAGCAAGAA+GGG | - | chr3_1:90477899-90477918 | None:intergenic | 30.0% | |
| TGAATAAATGCAAAGCAAGA+AGG | - | chr3_1:90477900-90477919 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | - | chr3_1:90477940-90477959 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | + | chr3_1:90477938-90477957 | Msa0386700:CDS | 30.0% | |
| ! | TATGATGATGCTGATAATGA+CGG | + | chr3_1:90478029-90478048 | Msa0386700:CDS | 30.0% |
| ATCATGATCTTCAAAACTTG+GGG | - | chr3_1:90478102-90478121 | None:intergenic | 30.0% | |
| GATCATGATCTTCAAAACTT+GGG | - | chr3_1:90478103-90478122 | None:intergenic | 30.0% | |
| !! | ATCATGATCGATTTGATGAA+AGG | + | chr3_1:90478114-90478133 | Msa0386700:intron | 30.0% |
| ! | TATGATGATGCTGATAATGA+CGG | + | chr3_1:90478029-90478048 | Msa0386700:CDS | 30.0% |
| ATCATGATCTTCAAAACTTG+GGG | - | chr3_1:90478102-90478121 | None:intergenic | 30.0% | |
| GATCATGATCTTCAAAACTT+GGG | - | chr3_1:90478103-90478122 | None:intergenic | 30.0% | |
| !! | ATCATGATCGATTTGATGAA+AGG | + | chr3_1:90478114-90478133 | Msa0386700:intron | 30.0% |
| !! | CGCTTTAAAACATATTGTCT+AGG | - | chr3_1:90478421-90478440 | None:intergenic | 30.0% |
| !!! | GACAATATGTTTTAAAGCGT+TGG | + | chr3_1:90478422-90478441 | Msa0386700:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr3_1:90478742-90478761 | None:intergenic | 30.0% |
| ! | TTTGTTTCTTCCGATTGATA+AGG | - | chr3_1:90478828-90478847 | None:intergenic | 30.0% |
| ACATCAACTTCATCTGATAG+TGG | + | chr3_1:90475790-90475809 | Msa0386700:CDS | 35.0% | |
| CCATGATTCTTTATTGCTAG+GGG | - | chr3_1:90475917-90475936 | None:intergenic | 35.0% | |
| TTCACAAACTCAATAACCTG+TGG | - | chr3_1:90476156-90476175 | None:intergenic | 35.0% | |
| GAAAGTGAAAGAAAAACCTG+AGG | + | chr3_1:90476173-90476192 | Msa0386700:CDS | 35.0% | |
| TGAAAGAAAAACCTGAGGAA+AGG | + | chr3_1:90476178-90476197 | Msa0386700:CDS | 35.0% | |
| GAAAGAAAAACCTGAGGAAA+GGG | + | chr3_1:90476179-90476198 | Msa0386700:CDS | 35.0% | |
| ! | AGCTGGAATATATTTGAAGC+TGG | + | chr3_1:90476212-90476231 | Msa0386700:CDS | 35.0% |
| ! | GAATGCTCTGGTTTATGTAA+TGG | - | chr3_1:90476291-90476310 | None:intergenic | 35.0% |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr3_1:90476330-90476349 | Msa0386700:CDS | 35.0% | |
| GAGAACGTCTTATGAAGTTA+TGG | + | chr3_1:90476392-90476411 | Msa0386700:CDS | 35.0% | |
| TCTTATGAAGTTATGGGTCA+GGG | + | chr3_1:90476399-90476418 | Msa0386700:CDS | 35.0% | |
| GACAATTCGTCAAAAAGAGA+TGG | + | chr3_1:90476479-90476498 | Msa0386700:CDS | 35.0% | |
| AATTCGTCAAAAAGAGATGG+TGG | + | chr3_1:90476482-90476501 | Msa0386700:CDS | 35.0% | |
| GTAAAAAGATGGTTTCGAGA+GGG | - | chr3_1:90476550-90476569 | None:intergenic | 35.0% | |
| AGTAAAAAGATGGTTTCGAG+AGG | - | chr3_1:90476551-90476570 | None:intergenic | 35.0% | |
| !!! | GCTAGTATTTTTTGGTCAGA+TGG | + | chr3_1:90476603-90476622 | Msa0386700:CDS | 35.0% |
| TAAGACCTATAGTCAATCCT+AGG | - | chr3_1:90476812-90476831 | None:intergenic | 35.0% | |
| ! | ATTTAGTTTACGCATTGCTG+AGG | + | chr3_1:90477015-90477034 | Msa0386700:intron | 35.0% |
| !!! | CATCGAAAGAGTGTTTTGTT+TGG | + | chr3_1:90477246-90477265 | Msa0386700:intron | 35.0% |
| AATCGTCTGTGGTTTCTTAT+TGG | - | chr3_1:90477343-90477362 | None:intergenic | 35.0% | |
| ! | TCAATTCCGAATAGTTTTCC+AGG | + | chr3_1:90477393-90477412 | Msa0386700:intron | 35.0% |
| ! | AGTTTTCCAGGTGTTTTTCA+TGG | + | chr3_1:90477405-90477424 | Msa0386700:intron | 35.0% |
| ! | GTTTTCCAGGTGTTTTTCAT+GGG | + | chr3_1:90477406-90477425 | Msa0386700:intron | 35.0% |
| !!! | TTTTTCATGGGCTTTGTTCA+TGG | + | chr3_1:90477418-90477437 | Msa0386700:intron | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr3_1:90477705-90477724 | Msa0386700:CDS | 35.0% |
| TAAAGAATCGAACAAGTGAG+TGG | - | chr3_1:90477746-90477765 | None:intergenic | 35.0% | |
| ACATTATGGTTCAGAGAATG+AGG | + | chr3_1:90477775-90477794 | Msa0386700:CDS | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | chr3_1:90477776-90477795 | Msa0386700:CDS | 35.0% | |
| CTTGCTTTGCATTTATTCAC+AGG | + | chr3_1:90477901-90477920 | Msa0386700:CDS | 35.0% | |
| ! | ATGATGATGCTGATAATGAC+GGG | + | chr3_1:90478030-90478049 | Msa0386700:CDS | 35.0% |
| TCCAAAACATCAACATTCGA+AGG | - | chr3_1:90478056-90478075 | None:intergenic | 35.0% | |
| CGATCATGATCTTCAAAACT+TGG | - | chr3_1:90478104-90478123 | None:intergenic | 35.0% | |
| ! | ATGAAAGGCTTCGAATGTTT+TGG | + | chr3_1:90478129-90478148 | Msa0386700:intron | 35.0% |
| ! | ATGATGATGCTGATAATGAC+GGG | + | chr3_1:90478030-90478049 | Msa0386700:CDS | 35.0% |
| TCCAAAACATCAACATTCGA+AGG | - | chr3_1:90478056-90478075 | None:intergenic | 35.0% | |
| CGATCATGATCTTCAAAACT+TGG | - | chr3_1:90478104-90478123 | None:intergenic | 35.0% | |
| ATGTCGTATGTTTGAGAACA+GGG | + | chr3_1:90478318-90478337 | Msa0386700:CDS | 35.0% | |
| !!! | TCGACATGTTTTGAAGATCT+TGG | + | chr3_1:90478351-90478370 | Msa0386700:CDS | 35.0% |
| TTGAAGATCTTGGAGTTCTT+AGG | + | chr3_1:90478361-90478380 | Msa0386700:CDS | 35.0% | |
| GATTTCATCTTATCGACAGA+CGG | - | chr3_1:90478463-90478482 | None:intergenic | 35.0% | |
| TGTTCTTGAAGCTGGAAAAA+AGG | + | chr3_1:90478609-90478628 | Msa0386700:CDS | 35.0% | |
| !! | CTTTCTAAAGGTATTCGTAC+AGG | + | chr3_1:90478646-90478665 | Msa0386700:CDS | 35.0% |
| TCTTTCTTTGAACTTTGGTG+CGG | - | chr3_1:90478737-90478756 | None:intergenic | 35.0% | |
| ! | AGTCGCTTCTTTGACTTAAT+TGG | - | chr3_1:90478766-90478785 | None:intergenic | 35.0% |
| GGCAGAAATTCCTTATCAAT+CGG | + | chr3_1:90478815-90478834 | Msa0386700:CDS | 35.0% | |
| ! | TGAAGCTTTATCAGTGATTG+TGG | + | chr3_1:90478858-90478877 | Msa0386700:CDS | 35.0% |
| ! | GAAGCTTTATCAGTGATTGT+GGG | + | chr3_1:90478859-90478878 | Msa0386700:CDS | 35.0% |
| TCAGCATGAATCATTGCTAG+GGG | - | chr3_1:90475877-90475896 | None:intergenic | 40.0% | |
| GTCAGCATGAATCATTGCTA+GGG | - | chr3_1:90475878-90475897 | None:intergenic | 40.0% | |
| TGTCAGCATGAATCATTGCT+AGG | - | chr3_1:90475879-90475898 | None:intergenic | 40.0% | |
| CCCCTAGCAATAAAGAATCA+TGG | + | chr3_1:90475914-90475933 | Msa0386700:CDS | 40.0% | |
| GTCTTATGAAGTTATGGGTC+AGG | + | chr3_1:90476398-90476417 | Msa0386700:CDS | 40.0% | |
| ! | GCACAGAGAATCTTCCTTTT+CGG | + | chr3_1:90476430-90476449 | Msa0386700:CDS | 40.0% |
| ! | CAGTACATTTTGAACTGCCT+AGG | + | chr3_1:90476792-90476811 | Msa0386700:intron | 40.0% |
| AACTGCCTAGGATTGACTAT+AGG | + | chr3_1:90476804-90476823 | Msa0386700:intron | 40.0% | |
| ! | ATTTTCTCGCTTCTGCCATT+TGG | + | chr3_1:90476875-90476894 | Msa0386700:intron | 40.0% |
| TCACACAAGACAAAATGCCT+AGG | - | chr3_1:90476949-90476968 | None:intergenic | 40.0% | |
| !!! | AGACAGCAGCTACTTTTGAT+TGG | + | chr3_1:90477289-90477308 | Msa0386700:intron | 40.0% |
| TGGTCTGTATAAATCGTCTG+TGG | - | chr3_1:90477354-90477373 | None:intergenic | 40.0% | |
| ACAGACGATTTATACAGACC+AGG | + | chr3_1:90477353-90477372 | Msa0386700:intron | 40.0% | |
| GCATACGATTTGCGTAAGTT+TGG | - | chr3_1:90477620-90477639 | None:intergenic | 40.0% | |
| CTTACGCAAATCGTATGCAT+TGG | + | chr3_1:90477622-90477641 | Msa0386700:CDS | 40.0% | |
| !! | TATGCATTGGTCTTCAGCTT+GGG | + | chr3_1:90477635-90477654 | Msa0386700:CDS | 40.0% |
| ! | GTCAAGTCACATTTTACAGC+TGG | + | chr3_1:90477657-90477676 | Msa0386700:CDS | 40.0% |
| ! | TCATGCTGAGTTGGACTTTA+AGG | + | chr3_1:90477803-90477822 | Msa0386700:CDS | 40.0% |
| ! | AGGGGTGTACTTGTTTACAA+CGG | - | chr3_1:90477880-90477899 | None:intergenic | 40.0% |
| TATGAGGAGGACACAACAAA+AGG | + | chr3_1:90477951-90477970 | Msa0386700:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | + | chr3_1:90477952-90477971 | Msa0386700:CDS | 40.0% | |
| ! | GCCTTCGAATGTTGATGTTT+TGG | + | chr3_1:90478052-90478071 | Msa0386700:CDS | 40.0% |
| !! | GGCTTCGAATGTTTTGGATA+AGG | + | chr3_1:90478135-90478154 | Msa0386700:intron | 40.0% |
| ! | GCCTTCGAATGTTGATGTTT+TGG | + | chr3_1:90478052-90478071 | Msa0386700:CDS | 40.0% |
| CATGTCGTATGTTTGAGAAC+AGG | + | chr3_1:90478317-90478336 | Msa0386700:CDS | 40.0% | |
| TGTCGTATGTTTGAGAACAG+GGG | + | chr3_1:90478319-90478338 | Msa0386700:CDS | 40.0% | |
| AAGATCTTGGAGTTCTTAGG+TGG | + | chr3_1:90478364-90478383 | Msa0386700:CDS | 40.0% | |
| ATGAAATCGACCGTCAATGT+TGG | + | chr3_1:90478475-90478494 | Msa0386700:CDS | 40.0% | |
| TTGATATCGTTGTGCTTGAC+TGG | - | chr3_1:90478512-90478531 | None:intergenic | 40.0% | |
| GAGGAGTTGCTTCTTTCTAA+AGG | + | chr3_1:90478634-90478653 | Msa0386700:CDS | 40.0% | |
| TTTGAAGACTTAGATGGCGT+CGG | - | chr3_1:90478673-90478692 | None:intergenic | 40.0% | |
| GCTACGTTTGAAGACTTAGA+TGG | - | chr3_1:90478679-90478698 | None:intergenic | 40.0% | |
| !! | TCACTGATTCATGCTGAGAG+TGG | + | chr3_1:90475835-90475854 | Msa0386700:CDS | 45.0% |
| ! | TCTGTTGTTGGCCTGTTGTT+AGG | - | chr3_1:90476129-90476148 | None:intergenic | 45.0% |
| GAAAAACCTGAGGAAAGGGT+TGG | + | chr3_1:90476183-90476202 | Msa0386700:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+AGG | - | chr3_1:90476192-90476211 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr3_1:90476195-90476214 | Msa0386700:CDS | 45.0% |
| CTAAGGTAACACGAATGCTC+TGG | - | chr3_1:90476303-90476322 | None:intergenic | 45.0% | |
| ! | CGTCAAAAAGAGATGGTGGT+TGG | + | chr3_1:90476486-90476505 | Msa0386700:CDS | 45.0% |
| AACACAATAACGCACTAGCC+TGG | - | chr3_1:90477374-90477393 | None:intergenic | 45.0% | |
| CAAAGCCCATGAAAAACACC+TGG | - | chr3_1:90477414-90477433 | None:intergenic | 45.0% | |
| !! | GTATGCATTGGTCTTCAGCT+TGG | + | chr3_1:90477634-90477653 | Msa0386700:CDS | 45.0% |
| AATCGAACAAGTGAGTGGTC+TGG | - | chr3_1:90477741-90477760 | None:intergenic | 45.0% | |
| GAGGGATAATCATGCTGAGT+TGG | + | chr3_1:90477794-90477813 | Msa0386700:CDS | 45.0% | |
| GTCTTCAGTGCCAACATTGA+CGG | - | chr3_1:90478488-90478507 | None:intergenic | 45.0% | |
| TGAAGCTGGAAAAAAGGCAG+AGG | + | chr3_1:90478615-90478634 | Msa0386700:CDS | 45.0% | |
| TTGAAGACTTAGATGGCGTC+GGG | - | chr3_1:90478672-90478691 | None:intergenic | 45.0% | |
| TCTTCAAACGTAGCTGCTGT+TGG | + | chr3_1:90478685-90478704 | Msa0386700:CDS | 45.0% | |
| ! | CTGTTGGTGAAACATCTGCT+GGG | + | chr3_1:90478701-90478720 | Msa0386700:CDS | 45.0% |
| ! | TGTTGGTGAAACATCTGCTG+GGG | + | chr3_1:90478702-90478721 | Msa0386700:CDS | 45.0% |
| ! | TCTTTGAACTTTGGTGCGGT+GGG | - | chr3_1:90478733-90478752 | None:intergenic | 45.0% |
| ! | TTCTTTGAACTTTGGTGCGG+TGG | - | chr3_1:90478734-90478753 | None:intergenic | 45.0% |
| ! | ACCTGTGGACTGTCTGTTGT+TGG | - | chr3_1:90476141-90476160 | None:intergenic | 50.0% |
| GAAGTTATGGGTCAGGGAGT+TGG | + | chr3_1:90476405-90476424 | Msa0386700:CDS | 50.0% | |
| !! | TGGGCTTTGTTCATGGCACA+TGG | + | chr3_1:90477425-90477444 | Msa0386700:intron | 50.0% |
| GAAGGCCTACCTCAGACTTT+AGG | + | chr3_1:90477586-90477605 | Msa0386700:CDS | 50.0% | |
| ! | AGCCACCTAAAGTCTGAGGT+AGG | - | chr3_1:90477594-90477613 | None:intergenic | 50.0% |
| GACAAGCCACCTAAAGTCTG+AGG | - | chr3_1:90477598-90477617 | None:intergenic | 50.0% | |
| ATCCCAACAGTCAGCTGATG+CGG | + | chr3_1:90477853-90477872 | Msa0386700:CDS | 50.0% | |
| ! | GCTGTTGGTGAAACATCTGC+TGG | + | chr3_1:90478700-90478719 | Msa0386700:CDS | 50.0% |
| GCCAACAACAGACAGTCCAC+AGG | + | chr3_1:90476137-90476156 | Msa0386700:CDS | 55.0% | |
| GTTATGGGTCAGGGAGTTGG+AGG | + | chr3_1:90476408-90476427 | Msa0386700:CDS | 55.0% | |
| GGCCTACCTCAGACTTTAGG+TGG | + | chr3_1:90477589-90477608 | Msa0386700:CDS | 55.0% | |
| GACCGCATCAGCTGACTGTT+GGG | - | chr3_1:90477858-90477877 | None:intergenic | 55.0% | |
| CTCGACGGTGTTCTTGAAGC+TGG | + | chr3_1:90478601-90478620 | Msa0386700:CDS | 55.0% | |
| GGACCGCATCAGCTGACTGT+TGG | - | chr3_1:90477859-90477878 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 90475781 | 90478888 | 90475781 | ID=Msa0386700;Name=Msa0386700 |
| chr3_1 | mRNA | 90475781 | 90478888 | 90475781 | ID=Msa0386700-mRNA-1;Parent=Msa0386700;Name=Msa0386700-mRNA-1;_AED=0.04;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|768 |
| chr3_1 | exon | 90475781 | 90476711 | 90475781 | ID=Msa0386700-mRNA-1:exon:24984;Parent=Msa0386700-mRNA-1 |
| chr3_1 | exon | 90477451 | 90478094 | 90477451 | ID=Msa0386700-mRNA-1:exon:24985;Parent=Msa0386700-mRNA-1 |
| chr3_1 | exon | 90478157 | 90478888 | 90478157 | ID=Msa0386700-mRNA-1:exon:24986;Parent=Msa0386700-mRNA-1 |
| chr3_1 | CDS | 90475781 | 90476711 | 90475781 | ID=Msa0386700-mRNA-1:cds;Parent=Msa0386700-mRNA-1 |
| chr3_1 | CDS | 90477451 | 90478094 | 90477451 | ID=Msa0386700-mRNA-1:cds;Parent=Msa0386700-mRNA-1 |
| chr3_1 | CDS | 90478157 | 90478888 | 90478157 | ID=Msa0386700-mRNA-1:cds;Parent=Msa0386700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
