Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388240 | XP_024634429.1 | 96.765 | 371 | 12 | 0 | 196 | 566 | 146 | 516 | 0.0 | 737 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388240 | sp|Q9SZL8|FRS5_ARATH | 39.726 | 219 | 132 | 0 | 196 | 414 | 424 | 642 | 3.40e-52 | 194 |
| Msa0388240 | sp|Q9SZL8|FRS5_ARATH | 28.859 | 149 | 94 | 3 | 47 | 188 | 70 | 213 | 6.79e-11 | 68.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388240 | A0A2K3L9Y4 | 65.734 | 143 | 42 | 1 | 54 | 196 | 1 | 136 | 2.97e-46 | 183 |
| Msa0388240 | A0A2K3L9Y4 | 67.688 | 359 | 114 | 2 | 197 | 555 | 336 | 692 | 9.03e-163 | 490 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0388240 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388240 | MtrunA17_Chr5g0448511 | 37.770 | 278 | 170 | 1 | 188 | 465 | 179 | 453 | 1.07e-55 | 196 |
| Msa0388240 | MtrunA17_Chr5g0448761 | 36.397 | 272 | 173 | 0 | 196 | 467 | 415 | 686 | 4.05e-55 | 199 |
| Msa0388240 | MtrunA17_Chr5g0448761 | 27.517 | 149 | 97 | 2 | 47 | 188 | 57 | 201 | 2.31e-11 | 66.6 |
| Msa0388240 | MtrunA17_Chr1g0202341 | 37.282 | 287 | 163 | 4 | 196 | 471 | 399 | 679 | 8.25e-51 | 185 |
| Msa0388240 | MtrunA17_Chr1g0202341 | 28.652 | 178 | 113 | 5 | 13 | 183 | 14 | 184 | 4.32e-13 | 72.0 |
| Msa0388240 | MtrunA17_Chr5g0440451 | 38.565 | 223 | 135 | 1 | 196 | 418 | 396 | 616 | 4.09e-47 | 177 |
| Msa0388240 | MtrunA17_Chr3g0118611 | 38.288 | 222 | 135 | 1 | 196 | 417 | 293 | 512 | 8.17e-44 | 166 |
| Msa0388240 | MtrunA17_Chr3g0080351 | 35.981 | 214 | 136 | 1 | 192 | 405 | 410 | 622 | 6.64e-41 | 158 |
| Msa0388240 | MtrunA17_Chr2g0296781 | 32.609 | 368 | 191 | 12 | 172 | 512 | 309 | 646 | 1.02e-40 | 157 |
| Msa0388240 | MtrunA17_Chr6g0477261 | 31.880 | 367 | 195 | 10 | 172 | 512 | 198 | 535 | 1.17e-40 | 156 |
| Msa0388240 | MtrunA17_Chr1g0207551 | 34.450 | 209 | 136 | 1 | 197 | 405 | 381 | 588 | 1.96e-36 | 145 |
| Msa0388240 | MtrunA17_Chr2g0287061 | 33.333 | 270 | 171 | 5 | 196 | 461 | 493 | 757 | 1.48e-34 | 139 |
| Msa0388240 | MtrunA17_Chr5g0441581 | 35.268 | 224 | 140 | 1 | 186 | 404 | 358 | 581 | 3.89e-34 | 137 |
| Msa0388240 | MtrunA17_Chr1g0196541 | 34.914 | 232 | 125 | 5 | 188 | 403 | 332 | 553 | 5.17e-33 | 134 |
| Msa0388240 | MtrunA17_Chr2g0291581 | 33.333 | 225 | 141 | 3 | 188 | 404 | 396 | 619 | 1.12e-32 | 133 |
| Msa0388240 | MtrunA17_Chr2g0329031 | 29.078 | 282 | 173 | 6 | 173 | 452 | 336 | 592 | 4.88e-31 | 128 |
| Msa0388240 | MtrunA17_Chr1g0198761 | 27.913 | 369 | 223 | 12 | 196 | 559 | 406 | 736 | 2.33e-29 | 123 |
| Msa0388240 | MtrunA17_Chr3g0082121 | 32.432 | 222 | 144 | 3 | 195 | 415 | 383 | 599 | 1.50e-27 | 117 |
| Msa0388240 | MtrunA17_Chr8g0363841 | 30.189 | 212 | 146 | 2 | 196 | 405 | 365 | 576 | 1.85e-26 | 114 |
| Msa0388240 | MtrunA17_Chr2g0294841 | 25.587 | 383 | 238 | 10 | 196 | 563 | 402 | 752 | 7.54e-26 | 112 |
| Msa0388240 | MtrunA17_Chr2g0276841 | 29.302 | 215 | 147 | 1 | 196 | 410 | 424 | 633 | 1.53e-24 | 108 |
| Msa0388240 | MtrunA17_Chr2g0289081 | 51.429 | 105 | 45 | 2 | 2 | 105 | 20 | 119 | 1.61e-24 | 99.4 |
| Msa0388240 | MtrunA17_Chr2g0324011 | 28.571 | 224 | 158 | 2 | 195 | 417 | 357 | 579 | 6.75e-23 | 102 |
| Msa0388240 | MtrunA17_Chr6g0458391 | 29.384 | 211 | 146 | 3 | 196 | 405 | 556 | 764 | 1.99e-22 | 101 |
| Msa0388240 | MtrunA17_Chr2g0290391 | 30.622 | 209 | 135 | 5 | 196 | 404 | 413 | 611 | 9.15e-21 | 96.7 |
| Msa0388240 | MtrunA17_Chr1g0203051 | 27.000 | 200 | 143 | 3 | 197 | 394 | 424 | 622 | 1.18e-20 | 95.9 |
| Msa0388240 | MtrunA17_Chr1g0203721 | 26.606 | 218 | 151 | 4 | 196 | 409 | 414 | 626 | 1.80e-20 | 95.9 |
| Msa0388240 | MtrunA17_Chr2g0308841 | 24.762 | 210 | 157 | 1 | 197 | 405 | 17 | 226 | 3.94e-19 | 87.4 |
| Msa0388240 | MtrunA17_Chr2g0287651 | 26.512 | 215 | 157 | 1 | 192 | 405 | 417 | 631 | 1.91e-18 | 89.4 |
| Msa0388240 | MtrunA17_Chr2g0291591 | 29.054 | 148 | 104 | 1 | 196 | 342 | 407 | 554 | 2.94e-15 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388240 | AT4G38180.1 | 39.726 | 219 | 132 | 0 | 196 | 414 | 424 | 642 | 3.46e-53 | 194 |
| Msa0388240 | AT4G38180.1 | 28.859 | 149 | 94 | 3 | 47 | 188 | 70 | 213 | 6.91e-12 | 68.9 |
| Msa0388240 | AT4G38170.1 | 37.946 | 224 | 138 | 1 | 188 | 410 | 181 | 404 | 1.68e-50 | 182 |
| Msa0388240 | AT2G27110.3 | 35.874 | 223 | 141 | 1 | 196 | 418 | 226 | 446 | 9.47e-47 | 174 |
| Msa0388240 | AT2G27110.2 | 35.874 | 223 | 141 | 1 | 196 | 418 | 371 | 591 | 1.90e-46 | 175 |
| Msa0388240 | AT2G27110.1 | 35.874 | 223 | 141 | 1 | 196 | 418 | 371 | 591 | 1.90e-46 | 175 |
| Msa0388240 | AT4G15090.1 | 35.981 | 214 | 134 | 3 | 196 | 408 | 400 | 611 | 7.69e-40 | 155 |
| Msa0388240 | AT4G15090.5 | 35.981 | 214 | 134 | 3 | 196 | 408 | 400 | 611 | 7.69e-40 | 155 |
| Msa0388240 | AT4G15090.3 | 35.981 | 214 | 134 | 3 | 196 | 408 | 400 | 611 | 7.69e-40 | 155 |
| Msa0388240 | AT4G15090.2 | 35.981 | 214 | 134 | 3 | 196 | 408 | 400 | 611 | 7.69e-40 | 155 |
| Msa0388240 | AT4G15090.4 | 35.981 | 214 | 134 | 3 | 196 | 408 | 400 | 611 | 7.69e-40 | 155 |
| Msa0388240 | AT3G22170.2 | 34.862 | 218 | 138 | 2 | 191 | 405 | 401 | 617 | 3.44e-37 | 147 |
| Msa0388240 | AT3G22170.1 | 34.862 | 218 | 138 | 2 | 191 | 405 | 401 | 617 | 3.44e-37 | 147 |
| Msa0388240 | AT4G19990.1 | 35.981 | 214 | 134 | 3 | 194 | 405 | 289 | 501 | 1.15e-35 | 142 |
| Msa0388240 | AT4G19990.6 | 35.981 | 214 | 134 | 3 | 194 | 405 | 346 | 558 | 1.21e-35 | 142 |
| Msa0388240 | AT4G19990.2 | 35.981 | 214 | 134 | 3 | 194 | 405 | 346 | 558 | 1.21e-35 | 142 |
| Msa0388240 | AT4G19990.5 | 35.981 | 214 | 134 | 3 | 194 | 405 | 346 | 558 | 1.51e-35 | 142 |
| Msa0388240 | AT4G19990.3 | 35.981 | 214 | 134 | 3 | 194 | 405 | 346 | 558 | 1.52e-35 | 142 |
| Msa0388240 | AT4G19990.4 | 35.981 | 214 | 134 | 3 | 194 | 405 | 346 | 558 | 1.52e-35 | 142 |
| Msa0388240 | AT4G19990.7 | 35.981 | 214 | 134 | 3 | 194 | 405 | 360 | 572 | 1.61e-35 | 142 |
| Msa0388240 | AT3G06250.2 | 34.286 | 210 | 135 | 1 | 196 | 405 | 497 | 703 | 2.23e-35 | 142 |
| Msa0388240 | AT3G06250.1 | 34.286 | 210 | 135 | 1 | 196 | 405 | 497 | 703 | 2.23e-35 | 142 |
| Msa0388240 | AT3G06250.3 | 34.286 | 210 | 135 | 1 | 196 | 405 | 497 | 703 | 2.23e-35 | 142 |
| Msa0388240 | AT5G18960.2 | 30.657 | 274 | 172 | 4 | 196 | 461 | 521 | 784 | 5.33e-34 | 137 |
| Msa0388240 | AT5G18960.1 | 30.657 | 274 | 172 | 4 | 196 | 461 | 521 | 784 | 5.33e-34 | 137 |
| Msa0388240 | AT2G32250.6 | 31.193 | 218 | 145 | 3 | 188 | 403 | 336 | 550 | 1.37e-33 | 136 |
| Msa0388240 | AT2G32250.1 | 31.193 | 218 | 145 | 3 | 188 | 403 | 336 | 550 | 1.37e-33 | 136 |
| Msa0388240 | AT2G32250.3 | 31.193 | 218 | 145 | 3 | 188 | 403 | 336 | 550 | 1.37e-33 | 136 |
| Msa0388240 | AT2G32250.2 | 31.193 | 218 | 145 | 3 | 188 | 403 | 336 | 550 | 1.39e-33 | 136 |
| Msa0388240 | AT2G32250.4 | 31.193 | 218 | 145 | 3 | 188 | 403 | 336 | 550 | 1.39e-33 | 136 |
| Msa0388240 | AT2G32250.8 | 31.193 | 218 | 145 | 3 | 188 | 403 | 295 | 509 | 1.47e-33 | 136 |
| Msa0388240 | AT2G32250.7 | 31.193 | 218 | 145 | 3 | 188 | 403 | 295 | 509 | 1.66e-33 | 136 |
| Msa0388240 | AT2G32250.5 | 31.193 | 218 | 145 | 3 | 188 | 403 | 336 | 550 | 1.83e-33 | 136 |
| Msa0388240 | AT1G76320.2 | 30.952 | 210 | 142 | 1 | 196 | 405 | 337 | 543 | 9.19e-32 | 130 |
| Msa0388240 | AT1G76320.1 | 30.952 | 210 | 142 | 1 | 196 | 405 | 337 | 543 | 9.76e-32 | 130 |
| Msa0388240 | AT1G76320.4 | 30.952 | 210 | 142 | 1 | 196 | 405 | 337 | 543 | 9.76e-32 | 130 |
| Msa0388240 | AT1G76320.3 | 30.952 | 210 | 142 | 1 | 196 | 405 | 337 | 543 | 1.27e-31 | 130 |
| Msa0388240 | AT1G52520.1 | 32.174 | 230 | 144 | 5 | 185 | 404 | 409 | 636 | 3.78e-30 | 125 |
| Msa0388240 | AT1G10240.2 | 29.187 | 209 | 141 | 3 | 196 | 403 | 402 | 604 | 1.35e-23 | 105 |
| Msa0388240 | AT1G10240.1 | 29.187 | 209 | 141 | 3 | 196 | 403 | 402 | 604 | 1.35e-23 | 105 |
| Msa0388240 | AT1G80010.1 | 27.753 | 227 | 155 | 5 | 196 | 415 | 445 | 669 | 3.37e-23 | 104 |
| Msa0388240 | AT5G28530.5 | 26.047 | 215 | 145 | 4 | 193 | 405 | 351 | 553 | 9.43e-16 | 80.9 |
| Msa0388240 | AT5G28530.4 | 26.512 | 215 | 148 | 4 | 193 | 405 | 351 | 557 | 1.13e-15 | 80.9 |
| Msa0388240 | AT5G28530.3 | 25.822 | 213 | 148 | 3 | 193 | 405 | 414 | 616 | 2.21e-15 | 80.1 |
| Msa0388240 | AT5G28530.2 | 25.822 | 213 | 148 | 3 | 193 | 405 | 414 | 616 | 2.21e-15 | 80.1 |
| Msa0388240 | AT5G28530.1 | 26.512 | 215 | 148 | 4 | 193 | 405 | 414 | 620 | 2.28e-15 | 79.7 |
Find 83 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTCTGAATTTGATGAATA+TGG | 0.168278 | 3_1:+92634704 | Msa0388240:CDS |
| TCTTCGGTGTCATAAGAAAA+TGG | 0.202449 | 3_1:+92633365 | Msa0388240:CDS |
| CGAAGATAATTCACACTCTT+AGG | 0.222243 | 3_1:-92633348 | None:intergenic |
| GAATTCCTTAACATCATTAA+TGG | 0.240357 | 3_1:-92633058 | None:intergenic |
| TGTTGTATGTTTACCTTCAT+TGG | 0.260845 | 3_1:-92633160 | None:intergenic |
| GATTAGTTATCCCATCTTCT+AGG | 0.265173 | 3_1:-92632930 | None:intergenic |
| GATATCAATTCGTGTAAAAT+TGG | 0.273365 | 3_1:-92634824 | None:intergenic |
| AGAAGAATGCAGTGTTTCTA+TGG | 0.279214 | 3_1:+92633197 | Msa0388240:CDS |
| GGCCATGCTCTCCACATAAT+TGG | 0.297552 | 3_1:-92635111 | None:intergenic |
| TTTGCTAAGAAAGAAGGTTT+TGG | 0.316303 | 3_1:+92633090 | Msa0388240:CDS |
| CGCTTTAAAATATAATTACT+TGG | 0.319121 | 3_1:-92634659 | None:intergenic |
| AAAGTACTTCTGTTATAAAT+AGG | 0.332728 | 3_1:-92634164 | None:intergenic |
| TAACACCATTAATGATGTTA+AGG | 0.352185 | 3_1:+92633053 | Msa0388240:CDS |
| ATAATAGATTGGCTTGAGTA+TGG | 0.358918 | 3_1:-92634781 | None:intergenic |
| TTGATTCGCCTTCAAATCAT+AGG | 0.373788 | 3_1:-92634102 | None:intergenic |
| ATTTATACGAGAACCATGTT+TGG | 0.382867 | 3_1:+92634401 | Msa0388240:CDS |
| CCAATACGAGGATGAAGATT+AGG | 0.407786 | 3_1:-92633021 | None:intergenic |
| GTGACGATTCTATTGATTGA+TGG | 0.414006 | 3_1:+92635164 | Msa0388240:CDS |
| TTTAGTCGCCTATGATTTGA+AGG | 0.425041 | 3_1:+92634094 | Msa0388240:CDS |
| GTTCTGAATTTGATGAATAT+GGG | 0.425812 | 3_1:+92634705 | Msa0388240:CDS |
| CCTAATCTTCATCCTCGTAT+TGG | 0.427152 | 3_1:+92633021 | Msa0388240:CDS |
| ATATCATTTGCTAAGAAAGA+AGG | 0.435059 | 3_1:+92633084 | Msa0388240:CDS |
| AATATTATGCAGACATATCT+TGG | 0.435991 | 3_1:+92634604 | Msa0388240:CDS |
| TGCAAGATCAGATAATAGAT+TGG | 0.455726 | 3_1:-92634792 | None:intergenic |
| CTTCGGTGTCATAAGAAAAT+GGG | 0.460080 | 3_1:+92633366 | Msa0388240:CDS |
| AAGCATGGAAGAGGAGCAAA+TGG | 0.460916 | 3_1:+92633280 | Msa0388240:CDS |
| TGAAGGGGTTTCTAAACCAT+TGG | 0.468733 | 3_1:-92632959 | None:intergenic |
| TAATTGGCAACTTCTCCTCT+TGG | 0.469730 | 3_1:-92635095 | None:intergenic |
| TACTTAGTGTTTCAAAAGCA+TGG | 0.470286 | 3_1:+92633265 | Msa0388240:CDS |
| AAGGCGAATCAATGGCTTCA+AGG | 0.471579 | 3_1:+92634113 | Msa0388240:CDS |
| GTTGCTGAAATGTTCAATAG+TGG | 0.473232 | 3_1:+92633447 | Msa0388240:CDS |
| GTTGAGAAGTTTGATGAGGA+GGG | 0.482885 | 3_1:+92633408 | Msa0388240:CDS |
| ATGATTTGAAGGCGAATCAA+TGG | 0.483292 | 3_1:+92634105 | Msa0388240:CDS |
| GAAGATAATTCACACTCTTA+GGG | 0.487256 | 3_1:-92633347 | None:intergenic |
| ACTATTACAAACCTAGAAGA+TGG | 0.487725 | 3_1:+92632919 | Msa0388240:CDS |
| TGCTGAACTGTTGTTCTCAA+AGG | 0.492640 | 3_1:-92634738 | None:intergenic |
| TTGGACAAAAGATGCTATCA+AGG | 0.497482 | 3_1:+92634682 | Msa0388240:CDS |
| GTCTCGAGAGTCATAACAGC+TGG | 0.504783 | 3_1:-92634510 | None:intergenic |
| CTAAGAGTGTGAATTATCTT+CGG | 0.508593 | 3_1:+92633349 | Msa0388240:CDS |
| GTGGAGAGCATGGCCACAAT+CGG | 0.509901 | 3_1:+92635119 | Msa0388240:CDS |
| GTTTGCAACTACGCCGATTG+TGG | 0.519437 | 3_1:-92635132 | None:intergenic |
| AGAAAATGGGTATGCCAGCT+AGG | 0.521369 | 3_1:+92633379 | Msa0388240:CDS |
| ACACTTGTATGTTCCAATGA+AGG | 0.524886 | 3_1:+92633147 | Msa0388240:CDS |
| AATTCAACAGATACGTTCAA+TGG | 0.528080 | 3_1:-92634956 | None:intergenic |
| GTGTTTCAAAAGCATGGAAG+AGG | 0.528126 | 3_1:+92633271 | Msa0388240:CDS |
| TGTTGAGAAGTTTGATGAGG+AGG | 0.530228 | 3_1:+92633407 | Msa0388240:CDS |
| TGTATAAAATAAGAGAGTCA+TGG | 0.535232 | 3_1:+92634138 | Msa0388240:CDS |
| TCATCTCATGAGACTAATGA+TGG | 0.537509 | 3_1:+92632991 | Msa0388240:CDS |
| TCTTCATCCTCGTATTGGAA+TGG | 0.541479 | 3_1:+92633026 | Msa0388240:CDS |
| GATGAGGAGGGAATACCTAC+AGG | 0.553328 | 3_1:+92633420 | Msa0388240:CDS |
| CCACGTGGTTCACAAACTAA+AGG | 0.554779 | 3_1:+92634992 | Msa0388240:CDS |
| GAAGAATGCAGTGTTTCTAT+GGG | 0.555346 | 3_1:+92633198 | Msa0388240:CDS |
| GTATAAAATAAGAGAGTCAT+GGG | 0.555885 | 3_1:+92634139 | Msa0388240:CDS |
| TTCTGAATTTGATGAATATG+GGG | 0.556419 | 3_1:+92634706 | Msa0388240:CDS |
| TTACACGAATTGATATCAGA+TGG | 0.557896 | 3_1:+92634830 | Msa0388240:CDS |
| ATTTCAGCAACCTTTCCTGT+AGG | 0.558570 | 3_1:-92633435 | None:intergenic |
| AGGAGAAGTTGCCAATTATG+TGG | 0.565187 | 3_1:+92635100 | Msa0388240:CDS |
| TCGAGACACATTCATTGTCC+AGG | 0.566462 | 3_1:+92634526 | Msa0388240:CDS |
| TCTTGTTGAGAAGTTTGATG+AGG | 0.573144 | 3_1:+92633404 | Msa0388240:CDS |
| ATCATGAAACTTTCCAAACA+TGG | 0.583792 | 3_1:-92634414 | None:intergenic |
| TGAATTTGATGAATATGGGG+GGG | 0.583925 | 3_1:+92634709 | Msa0388240:CDS |
| TGCCAATTATGTGGAGAGCA+TGG | 0.585622 | 3_1:+92635109 | Msa0388240:CDS |
| CTATTACAAACCTAGAAGAT+GGG | 0.593537 | 3_1:+92632920 | Msa0388240:CDS |
| TTCTCAACAAGACTCCTAGC+TGG | 0.594039 | 3_1:-92633393 | None:intergenic |
| GACTTCTAGAACTGATTGCA+AGG | 0.598075 | 3_1:+92633239 | Msa0388240:CDS |
| AGTGAAATATGACAAGGCAG+TGG | 0.616232 | 3_1:+92634280 | Msa0388240:CDS |
| CCTTTAGTTTGTGAACCACG+TGG | 0.621405 | 3_1:-92634992 | None:intergenic |
| ATAACTAATCACATGTCCAA+TGG | 0.622416 | 3_1:+92632943 | Msa0388240:CDS |
| CCAGGTGGATCTTGACACAA+AGG | 0.622738 | 3_1:+92634544 | Msa0388240:CDS |
| CTGAATTTGATGAATATGGG+GGG | 0.626917 | 3_1:+92634708 | Msa0388240:CDS |
| GCAATCAGTTCTAGAAGTCG+AGG | 0.627939 | 3_1:-92633235 | None:intergenic |
| TCTGAATTTGATGAATATGG+GGG | 0.630474 | 3_1:+92634707 | Msa0388240:CDS |
| GCTGAAATGTTCAATAGTGG+AGG | 0.633797 | 3_1:+92633450 | Msa0388240:CDS |
| GGAGGGAATACCTACAGGAA+AGG | 0.657144 | 3_1:+92633425 | Msa0388240:CDS |
| TGGACAAAAGATGCTATCAA+GGG | 0.663676 | 3_1:+92634683 | Msa0388240:CDS |
| TAATACTTGAGAGACGTGAT+CGG | 0.666164 | 3_1:-92634349 | None:intergenic |
| CCTTTGTGTCAAGATCCACC+TGG | 0.680465 | 3_1:-92634544 | None:intergenic |
| TAACTCGATCACAAGCCAAG+AGG | 0.682824 | 3_1:+92635080 | Msa0388240:CDS |
| AATTCGAACTCGTACAACCA+AGG | 0.687037 | 3_1:+92633113 | Msa0388240:CDS |
| TTAAATTCCATTCCAATACG+AGG | 0.691662 | 3_1:-92633033 | None:intergenic |
| AGACACATTCATTGTCCAGG+TGG | 0.693812 | 3_1:+92634529 | Msa0388240:CDS |
| GTAACAAGAGAGACTCAACA+TGG | 0.750291 | 3_1:+92635028 | Msa0388240:CDS |
| TTAGATATTAAAGATCCACG+TGG | 0.823149 | 3_1:+92634977 | Msa0388240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTATTTCATAAAAAAAATT+TGG | - | chr3_1:92633594-92633613 | None:intergenic | 10.0% |
| !!! | ATAGAATGATAAATTTTTTT+TGG | + | chr3_1:92633628-92633647 | Msa0388240:intron | 10.0% |
| !!! | TAGAATGATAAATTTTTTTT+GGG | + | chr3_1:92633629-92633648 | Msa0388240:intron | 10.0% |
| !! | TGTATTTCATAAAAAAAATT+TGG | - | chr3_1:92633594-92633613 | None:intergenic | 10.0% |
| !!! | ATAGAATGATAAATTTTTTT+TGG | + | chr3_1:92633628-92633647 | Msa0388240:intron | 10.0% |
| !!! | TAGAATGATAAATTTTTTTT+GGG | + | chr3_1:92633629-92633648 | Msa0388240:intron | 10.0% |
| !!! | AATGATAAATTTTTTTTGGG+TGG | + | chr3_1:92633632-92633651 | Msa0388240:intron | 20.0% |
| !!! | CATTTTCAATCTATCTTATT+TGG | + | chr3_1:92633768-92633787 | Msa0388240:intron | 20.0% |
| !! | ATTCTCTTCAAAATCTTTAA+TGG | - | chr3_1:92634063-92634082 | None:intergenic | 20.0% |
| !!! | TTAAAGATTTTGAAGAGAAT+TGG | + | chr3_1:92634063-92634082 | Msa0388240:intron | 20.0% |
| !!! | TAAAGATTTTGAAGAGAATT+GGG | + | chr3_1:92634064-92634083 | Msa0388240:intron | 20.0% |
| !!! | AAAGTACTTCTGTTATAAAT+AGG | - | chr3_1:92634167-92634186 | None:intergenic | 20.0% |
| !! | AAGTATTAAGTCAAAAATTG+AGG | + | chr3_1:92634364-92634383 | Msa0388240:CDS | 20.0% |
| !!! | ACAGATTTTTCAATTCAAAA+AGG | + | chr3_1:92634445-92634464 | Msa0388240:CDS | 20.0% |
| !! | AAGGAGAAAATTGAAAAAAA+TGG | + | chr3_1:92634464-92634483 | Msa0388240:CDS | 20.0% |
| !!! | CGCTTTAAAATATAATTACT+TGG | - | chr3_1:92634662-92634681 | None:intergenic | 20.0% |
| !!! | GTAATTATATTTTAAAGCGT+TGG | + | chr3_1:92634663-92634682 | Msa0388240:CDS | 20.0% |
| !!! | AATGATAAATTTTTTTTGGG+TGG | + | chr3_1:92633632-92633651 | Msa0388240:intron | 20.0% |
| !!! | CATTTTCAATCTATCTTATT+TGG | + | chr3_1:92633768-92633787 | Msa0388240:intron | 20.0% |
| !! | ATTCTCTTCAAAATCTTTAA+TGG | - | chr3_1:92634063-92634082 | None:intergenic | 20.0% |
| !!! | TTAAAGATTTTGAAGAGAAT+TGG | + | chr3_1:92634063-92634082 | Msa0388240:intron | 20.0% |
| !!! | TAAAGATTTTGAAGAGAATT+GGG | + | chr3_1:92634064-92634083 | Msa0388240:intron | 20.0% |
| !!! | AAAGTACTTCTGTTATAAAT+AGG | - | chr3_1:92634167-92634186 | None:intergenic | 20.0% |
| !! | AAGTATTAAGTCAAAAATTG+AGG | + | chr3_1:92634364-92634383 | Msa0388240:CDS | 20.0% |
| !!! | ACAGATTTTTCAATTCAAAA+AGG | + | chr3_1:92634445-92634464 | Msa0388240:CDS | 20.0% |
| !! | AAGGAGAAAATTGAAAAAAA+TGG | + | chr3_1:92634464-92634483 | Msa0388240:CDS | 20.0% |
| !!! | CGCTTTAAAATATAATTACT+TGG | - | chr3_1:92634662-92634681 | None:intergenic | 20.0% |
| !!! | GTAATTATATTTTAAAGCGT+TGG | + | chr3_1:92634663-92634682 | Msa0388240:CDS | 20.0% |
| !!! | AGATGAAATAACTTTTGAAG+GGG | - | chr3_1:92632977-92632996 | None:intergenic | 25.0% |
| !! | GAGATGAAATAACTTTTGAA+GGG | - | chr3_1:92632978-92632997 | None:intergenic | 25.0% |
| !! | TGAGATGAAATAACTTTTGA+AGG | - | chr3_1:92632979-92632998 | None:intergenic | 25.0% |
| ! | TAACACCATTAATGATGTTA+AGG | + | chr3_1:92633053-92633072 | Msa0388240:CDS | 25.0% |
| ! | GAATTCCTTAACATCATTAA+TGG | - | chr3_1:92633061-92633080 | None:intergenic | 25.0% |
| !! | ATATCATTTGCTAAGAAAGA+AGG | + | chr3_1:92633084-92633103 | Msa0388240:CDS | 25.0% |
| !! | AAGTGTACAAAAATTTTCCT+TGG | - | chr3_1:92633133-92633152 | None:intergenic | 25.0% |
| !! | TTGAATGGTTATTTCAAACA+TGG | + | chr3_1:92633826-92633845 | Msa0388240:intron | 25.0% |
| ! | TTTCATTGACAAATCTTGAT+CGG | - | chr3_1:92633892-92633911 | None:intergenic | 25.0% |
| !! | GTATATATGTGAAAGCTTTT+CGG | - | chr3_1:92633985-92634004 | None:intergenic | 25.0% |
| !!! | TCTTGAAAGGTGATTTTTTA+TGG | - | chr3_1:92634007-92634026 | None:intergenic | 25.0% |
| ! | TAAAAAATCACCTTTCAAGA+AGG | + | chr3_1:92634007-92634026 | Msa0388240:intron | 25.0% |
| ! | TCTTCAAAATCTTTAATGGA+TGG | - | chr3_1:92634059-92634078 | None:intergenic | 25.0% |
| ! | TGTATAAAATAAGAGAGTCA+TGG | + | chr3_1:92634138-92634157 | Msa0388240:CDS | 25.0% |
| ! | GTATAAAATAAGAGAGTCAT+GGG | + | chr3_1:92634139-92634158 | Msa0388240:CDS | 25.0% |
| !! | TTTTGTAGTGAAATATGACA+AGG | + | chr3_1:92634274-92634293 | Msa0388240:CDS | 25.0% |
| !!! | TTGTCAACTTTTTGAGTTTA+TGG | + | chr3_1:92634580-92634599 | Msa0388240:CDS | 25.0% |
| !!! | TGTCAACTTTTTGAGTTTAT+GGG | + | chr3_1:92634581-92634600 | Msa0388240:CDS | 25.0% |
| ! | AATATTATGCAGACATATCT+TGG | + | chr3_1:92634604-92634623 | Msa0388240:CDS | 25.0% |
| !! | GTTCTGAATTTGATGAATAT+GGG | + | chr3_1:92634705-92634724 | Msa0388240:CDS | 25.0% |
| ! | TTCTGAATTTGATGAATATG+GGG | + | chr3_1:92634706-92634725 | Msa0388240:CDS | 25.0% |
| ! | GATATCAATTCGTGTAAAAT+TGG | - | chr3_1:92634827-92634846 | None:intergenic | 25.0% |
| ! | ACAAACTAAAGGAAGAAAAA+AGG | + | chr3_1:92635003-92635022 | Msa0388240:CDS | 25.0% |
| !!! | AGATGAAATAACTTTTGAAG+GGG | - | chr3_1:92632977-92632996 | None:intergenic | 25.0% |
| !! | GAGATGAAATAACTTTTGAA+GGG | - | chr3_1:92632978-92632997 | None:intergenic | 25.0% |
| !! | TGAGATGAAATAACTTTTGA+AGG | - | chr3_1:92632979-92632998 | None:intergenic | 25.0% |
| ! | TAACACCATTAATGATGTTA+AGG | + | chr3_1:92633053-92633072 | Msa0388240:CDS | 25.0% |
| ! | GAATTCCTTAACATCATTAA+TGG | - | chr3_1:92633061-92633080 | None:intergenic | 25.0% |
| !! | ATATCATTTGCTAAGAAAGA+AGG | + | chr3_1:92633084-92633103 | Msa0388240:CDS | 25.0% |
| !! | AAGTGTACAAAAATTTTCCT+TGG | - | chr3_1:92633133-92633152 | None:intergenic | 25.0% |
| !! | TTGAATGGTTATTTCAAACA+TGG | + | chr3_1:92633826-92633845 | Msa0388240:intron | 25.0% |
| ! | TTTCATTGACAAATCTTGAT+CGG | - | chr3_1:92633892-92633911 | None:intergenic | 25.0% |
| !! | GTATATATGTGAAAGCTTTT+CGG | - | chr3_1:92633985-92634004 | None:intergenic | 25.0% |
| !!! | TCTTGAAAGGTGATTTTTTA+TGG | - | chr3_1:92634007-92634026 | None:intergenic | 25.0% |
| ! | TAAAAAATCACCTTTCAAGA+AGG | + | chr3_1:92634007-92634026 | Msa0388240:intron | 25.0% |
| ! | TCTTCAAAATCTTTAATGGA+TGG | - | chr3_1:92634059-92634078 | None:intergenic | 25.0% |
| ! | TGTATAAAATAAGAGAGTCA+TGG | + | chr3_1:92634138-92634157 | Msa0388240:CDS | 25.0% |
| ! | GTATAAAATAAGAGAGTCAT+GGG | + | chr3_1:92634139-92634158 | Msa0388240:CDS | 25.0% |
| !! | TTTTGTAGTGAAATATGACA+AGG | + | chr3_1:92634274-92634293 | Msa0388240:CDS | 25.0% |
| !!! | TTGTCAACTTTTTGAGTTTA+TGG | + | chr3_1:92634580-92634599 | Msa0388240:CDS | 25.0% |
| !!! | TGTCAACTTTTTGAGTTTAT+GGG | + | chr3_1:92634581-92634600 | Msa0388240:CDS | 25.0% |
| ! | AATATTATGCAGACATATCT+TGG | + | chr3_1:92634604-92634623 | Msa0388240:CDS | 25.0% |
| !! | GTTCTGAATTTGATGAATAT+GGG | + | chr3_1:92634705-92634724 | Msa0388240:CDS | 25.0% |
| ! | TTCTGAATTTGATGAATATG+GGG | + | chr3_1:92634706-92634725 | Msa0388240:CDS | 25.0% |
| ! | GATATCAATTCGTGTAAAAT+TGG | - | chr3_1:92634827-92634846 | None:intergenic | 25.0% |
| ! | ACAAACTAAAGGAAGAAAAA+AGG | + | chr3_1:92635003-92635022 | Msa0388240:CDS | 25.0% |
| ACTATTACAAACCTAGAAGA+TGG | + | chr3_1:92632919-92632938 | Msa0388240:CDS | 30.0% | |
| CTATTACAAACCTAGAAGAT+GGG | + | chr3_1:92632920-92632939 | Msa0388240:CDS | 30.0% | |
| ATAACTAATCACATGTCCAA+TGG | + | chr3_1:92632943-92632962 | Msa0388240:CDS | 30.0% | |
| TTAAATTCCATTCCAATACG+AGG | - | chr3_1:92633036-92633055 | None:intergenic | 30.0% | |
| ! | TTTGCTAAGAAAGAAGGTTT+TGG | + | chr3_1:92633090-92633109 | Msa0388240:CDS | 30.0% |
| TGTTGTATGTTTACCTTCAT+TGG | - | chr3_1:92633163-92633182 | None:intergenic | 30.0% | |
| TACTTAGTGTTTCAAAAGCA+TGG | + | chr3_1:92633265-92633284 | Msa0388240:CDS | 30.0% | |
| GAAGATAATTCACACTCTTA+GGG | - | chr3_1:92633350-92633369 | None:intergenic | 30.0% | |
| ! | CTAAGAGTGTGAATTATCTT+CGG | + | chr3_1:92633349-92633368 | Msa0388240:CDS | 30.0% |
| !! | CTTTTTCTAGTAGAGATTGT+TGG | + | chr3_1:92633478-92633497 | Msa0388240:intron | 30.0% |
| !!! | AGATTGGCTTATAAGGTTTT+TGG | + | chr3_1:92633666-92633685 | Msa0388240:intron | 30.0% |
| ! | GTTATTTCAAACATGGCTAA+AGG | + | chr3_1:92633833-92633852 | Msa0388240:intron | 30.0% |
| GATTTCAATTCCTTCTTGAA+AGG | - | chr3_1:92634020-92634039 | None:intergenic | 30.0% | |
| !!! | AACAGAAGTACTTTTTTTGC+TGG | + | chr3_1:92634173-92634192 | Msa0388240:CDS | 30.0% |
| !!! | ACAGAAGTACTTTTTTTGCT+GGG | + | chr3_1:92634174-92634193 | Msa0388240:CDS | 30.0% |
| !! | CTCGTTTCTGTTTTTCATAA+CGG | - | chr3_1:92634310-92634329 | None:intergenic | 30.0% |
| ! | AACGAGAAGATTTTGAATCA+AGG | + | chr3_1:92634324-92634343 | Msa0388240:CDS | 30.0% |
| ATTTATACGAGAACCATGTT+TGG | + | chr3_1:92634401-92634420 | Msa0388240:CDS | 30.0% | |
| ATCATGAAACTTTCCAAACA+TGG | - | chr3_1:92634417-92634436 | None:intergenic | 30.0% | |
| !! | GGTTCTGAATTTGATGAATA+TGG | + | chr3_1:92634704-92634723 | Msa0388240:CDS | 30.0% |
| TCTGAATTTGATGAATATGG+GGG | + | chr3_1:92634707-92634726 | Msa0388240:CDS | 30.0% | |
| !! | ATAATAGATTGGCTTGAGTA+TGG | - | chr3_1:92634784-92634803 | None:intergenic | 30.0% |
| TGCAAGATCAGATAATAGAT+TGG | - | chr3_1:92634795-92634814 | None:intergenic | 30.0% | |
| TTACACGAATTGATATCAGA+TGG | + | chr3_1:92634830-92634849 | Msa0388240:CDS | 30.0% | |
| !!! | CTCGTCAAATTTTTAGAACT+TGG | - | chr3_1:92634932-92634951 | None:intergenic | 30.0% |
| AATTCAACAGATACGTTCAA+TGG | - | chr3_1:92634959-92634978 | None:intergenic | 30.0% | |
| TTAGATATTAAAGATCCACG+TGG | + | chr3_1:92634977-92634996 | Msa0388240:CDS | 30.0% | |
| ACTATTACAAACCTAGAAGA+TGG | + | chr3_1:92632919-92632938 | Msa0388240:CDS | 30.0% | |
| CTATTACAAACCTAGAAGAT+GGG | + | chr3_1:92632920-92632939 | Msa0388240:CDS | 30.0% | |
| ATAACTAATCACATGTCCAA+TGG | + | chr3_1:92632943-92632962 | Msa0388240:CDS | 30.0% | |
| TTAAATTCCATTCCAATACG+AGG | - | chr3_1:92633036-92633055 | None:intergenic | 30.0% | |
| ! | TTTGCTAAGAAAGAAGGTTT+TGG | + | chr3_1:92633090-92633109 | Msa0388240:CDS | 30.0% |
| TGTTGTATGTTTACCTTCAT+TGG | - | chr3_1:92633163-92633182 | None:intergenic | 30.0% | |
| TACTTAGTGTTTCAAAAGCA+TGG | + | chr3_1:92633265-92633284 | Msa0388240:CDS | 30.0% | |
| GAAGATAATTCACACTCTTA+GGG | - | chr3_1:92633350-92633369 | None:intergenic | 30.0% | |
| ! | CTAAGAGTGTGAATTATCTT+CGG | + | chr3_1:92633349-92633368 | Msa0388240:CDS | 30.0% |
| !! | CTTTTTCTAGTAGAGATTGT+TGG | + | chr3_1:92633478-92633497 | Msa0388240:intron | 30.0% |
| !!! | AGATTGGCTTATAAGGTTTT+TGG | + | chr3_1:92633666-92633685 | Msa0388240:intron | 30.0% |
| ! | GTTATTTCAAACATGGCTAA+AGG | + | chr3_1:92633833-92633852 | Msa0388240:intron | 30.0% |
| GATTTCAATTCCTTCTTGAA+AGG | - | chr3_1:92634020-92634039 | None:intergenic | 30.0% | |
| !!! | AACAGAAGTACTTTTTTTGC+TGG | + | chr3_1:92634173-92634192 | Msa0388240:CDS | 30.0% |
| !!! | ACAGAAGTACTTTTTTTGCT+GGG | + | chr3_1:92634174-92634193 | Msa0388240:CDS | 30.0% |
| !! | CTCGTTTCTGTTTTTCATAA+CGG | - | chr3_1:92634310-92634329 | None:intergenic | 30.0% |
| ! | AACGAGAAGATTTTGAATCA+AGG | + | chr3_1:92634324-92634343 | Msa0388240:CDS | 30.0% |
| ATTTATACGAGAACCATGTT+TGG | + | chr3_1:92634401-92634420 | Msa0388240:CDS | 30.0% | |
| ATCATGAAACTTTCCAAACA+TGG | - | chr3_1:92634417-92634436 | None:intergenic | 30.0% | |
| !! | GGTTCTGAATTTGATGAATA+TGG | + | chr3_1:92634704-92634723 | Msa0388240:CDS | 30.0% |
| TCTGAATTTGATGAATATGG+GGG | + | chr3_1:92634707-92634726 | Msa0388240:CDS | 30.0% | |
| !! | ATAATAGATTGGCTTGAGTA+TGG | - | chr3_1:92634784-92634803 | None:intergenic | 30.0% |
| TGCAAGATCAGATAATAGAT+TGG | - | chr3_1:92634795-92634814 | None:intergenic | 30.0% | |
| TTACACGAATTGATATCAGA+TGG | + | chr3_1:92634830-92634849 | Msa0388240:CDS | 30.0% | |
| !!! | CTCGTCAAATTTTTAGAACT+TGG | - | chr3_1:92634932-92634951 | None:intergenic | 30.0% |
| AATTCAACAGATACGTTCAA+TGG | - | chr3_1:92634959-92634978 | None:intergenic | 30.0% | |
| TTAGATATTAAAGATCCACG+TGG | + | chr3_1:92634977-92634996 | Msa0388240:CDS | 30.0% | |
| ! | GATTAGTTATCCCATCTTCT+AGG | - | chr3_1:92632933-92632952 | None:intergenic | 35.0% |
| TCATCTCATGAGACTAATGA+TGG | + | chr3_1:92632991-92633010 | Msa0388240:CDS | 35.0% | |
| ACACTTGTATGTTCCAATGA+AGG | + | chr3_1:92633147-92633166 | Msa0388240:CDS | 35.0% | |
| ! | AGAAGAATGCAGTGTTTCTA+TGG | + | chr3_1:92633197-92633216 | Msa0388240:CDS | 35.0% |
| ! | GAAGAATGCAGTGTTTCTAT+GGG | + | chr3_1:92633198-92633217 | Msa0388240:CDS | 35.0% |
| CGAAGATAATTCACACTCTT+AGG | - | chr3_1:92633351-92633370 | None:intergenic | 35.0% | |
| !! | TCTTCGGTGTCATAAGAAAA+TGG | + | chr3_1:92633365-92633384 | Msa0388240:CDS | 35.0% |
| !! | CTTCGGTGTCATAAGAAAAT+GGG | + | chr3_1:92633366-92633385 | Msa0388240:CDS | 35.0% |
| TCTTGTTGAGAAGTTTGATG+AGG | + | chr3_1:92633404-92633423 | Msa0388240:CDS | 35.0% | |
| GTTGCTGAAATGTTCAATAG+TGG | + | chr3_1:92633447-92633466 | Msa0388240:CDS | 35.0% | |
| ACCTTAGAAATCTTCGAAGA+AGG | + | chr3_1:92633505-92633524 | Msa0388240:intron | 35.0% | |
| TCCTTCTTCGAAGATTTCTA+AGG | - | chr3_1:92633509-92633528 | None:intergenic | 35.0% | |
| CGAAGAAGGAATCTTGTAAT+TGG | + | chr3_1:92633519-92633538 | Msa0388240:intron | 35.0% | |
| !! | AAGATCGAGATTGGCTTATA+AGG | + | chr3_1:92633659-92633678 | Msa0388240:intron | 35.0% |
| TGATGATTCAACCCAACAAA+AGG | - | chr3_1:92633750-92633769 | None:intergenic | 35.0% | |
| ! | AGACAGAGAAGTCTTTTGAA+TGG | + | chr3_1:92633811-92633830 | Msa0388240:intron | 35.0% |
| ACGAGTATTTGGAAACACAT+TGG | - | chr3_1:92633925-92633944 | None:intergenic | 35.0% | |
| TTTAGTCGCCTATGATTTGA+AGG | + | chr3_1:92634094-92634113 | Msa0388240:CDS | 35.0% | |
| ! | TTGATTCGCCTTCAAATCAT+AGG | - | chr3_1:92634105-92634124 | None:intergenic | 35.0% |
| ATGATTTGAAGGCGAATCAA+TGG | + | chr3_1:92634105-92634124 | Msa0388240:CDS | 35.0% | |
| TAATACTTGAGAGACGTGAT+CGG | - | chr3_1:92634352-92634371 | None:intergenic | 35.0% | |
| ! | TGGAATGTCGACAACATTTT+TGG | - | chr3_1:92634642-92634661 | None:intergenic | 35.0% |
| TTGGACAAAAGATGCTATCA+AGG | + | chr3_1:92634682-92634701 | Msa0388240:CDS | 35.0% | |
| TGGACAAAAGATGCTATCAA+GGG | + | chr3_1:92634683-92634702 | Msa0388240:CDS | 35.0% | |
| CTGAATTTGATGAATATGGG+GGG | + | chr3_1:92634708-92634727 | Msa0388240:CDS | 35.0% | |
| TGAATTTGATGAATATGGGG+GGG | + | chr3_1:92634709-92634728 | Msa0388240:CDS | 35.0% | |
| !!! | TTTTTAGAACTTGGCTCTAG+AGG | - | chr3_1:92634923-92634942 | None:intergenic | 35.0% |
| ! | GATTAGTTATCCCATCTTCT+AGG | - | chr3_1:92632933-92632952 | None:intergenic | 35.0% |
| TCATCTCATGAGACTAATGA+TGG | + | chr3_1:92632991-92633010 | Msa0388240:CDS | 35.0% | |
| ACACTTGTATGTTCCAATGA+AGG | + | chr3_1:92633147-92633166 | Msa0388240:CDS | 35.0% | |
| ! | AGAAGAATGCAGTGTTTCTA+TGG | + | chr3_1:92633197-92633216 | Msa0388240:CDS | 35.0% |
| ! | GAAGAATGCAGTGTTTCTAT+GGG | + | chr3_1:92633198-92633217 | Msa0388240:CDS | 35.0% |
| CGAAGATAATTCACACTCTT+AGG | - | chr3_1:92633351-92633370 | None:intergenic | 35.0% | |
| !! | TCTTCGGTGTCATAAGAAAA+TGG | + | chr3_1:92633365-92633384 | Msa0388240:CDS | 35.0% |
| !! | CTTCGGTGTCATAAGAAAAT+GGG | + | chr3_1:92633366-92633385 | Msa0388240:CDS | 35.0% |
| TCTTGTTGAGAAGTTTGATG+AGG | + | chr3_1:92633404-92633423 | Msa0388240:CDS | 35.0% | |
| GTTGCTGAAATGTTCAATAG+TGG | + | chr3_1:92633447-92633466 | Msa0388240:CDS | 35.0% | |
| ACCTTAGAAATCTTCGAAGA+AGG | + | chr3_1:92633505-92633524 | Msa0388240:intron | 35.0% | |
| TCCTTCTTCGAAGATTTCTA+AGG | - | chr3_1:92633509-92633528 | None:intergenic | 35.0% | |
| CGAAGAAGGAATCTTGTAAT+TGG | + | chr3_1:92633519-92633538 | Msa0388240:intron | 35.0% | |
| !! | AAGATCGAGATTGGCTTATA+AGG | + | chr3_1:92633659-92633678 | Msa0388240:intron | 35.0% |
| TGATGATTCAACCCAACAAA+AGG | - | chr3_1:92633750-92633769 | None:intergenic | 35.0% | |
| ! | AGACAGAGAAGTCTTTTGAA+TGG | + | chr3_1:92633811-92633830 | Msa0388240:intron | 35.0% |
| ACGAGTATTTGGAAACACAT+TGG | - | chr3_1:92633925-92633944 | None:intergenic | 35.0% | |
| TTTAGTCGCCTATGATTTGA+AGG | + | chr3_1:92634094-92634113 | Msa0388240:CDS | 35.0% | |
| ! | TTGATTCGCCTTCAAATCAT+AGG | - | chr3_1:92634105-92634124 | None:intergenic | 35.0% |
| ATGATTTGAAGGCGAATCAA+TGG | + | chr3_1:92634105-92634124 | Msa0388240:CDS | 35.0% | |
| TAATACTTGAGAGACGTGAT+CGG | - | chr3_1:92634352-92634371 | None:intergenic | 35.0% | |
| ! | TGGAATGTCGACAACATTTT+TGG | - | chr3_1:92634642-92634661 | None:intergenic | 35.0% |
| TTGGACAAAAGATGCTATCA+AGG | + | chr3_1:92634682-92634701 | Msa0388240:CDS | 35.0% | |
| TGGACAAAAGATGCTATCAA+GGG | + | chr3_1:92634683-92634702 | Msa0388240:CDS | 35.0% | |
| CTGAATTTGATGAATATGGG+GGG | + | chr3_1:92634708-92634727 | Msa0388240:CDS | 35.0% | |
| TGAATTTGATGAATATGGGG+GGG | + | chr3_1:92634709-92634728 | Msa0388240:CDS | 35.0% | |
| !!! | TTTTTAGAACTTGGCTCTAG+AGG | - | chr3_1:92634923-92634942 | None:intergenic | 35.0% |
| TGAAGGGGTTTCTAAACCAT+TGG | - | chr3_1:92632962-92632981 | None:intergenic | 40.0% | |
| CCAATACGAGGATGAAGATT+AGG | - | chr3_1:92633024-92633043 | None:intergenic | 40.0% | |
| CCTAATCTTCATCCTCGTAT+TGG | + | chr3_1:92633021-92633040 | Msa0388240:CDS | 40.0% | |
| TCTTCATCCTCGTATTGGAA+TGG | + | chr3_1:92633026-92633045 | Msa0388240:CDS | 40.0% | |
| AATTCGAACTCGTACAACCA+AGG | + | chr3_1:92633113-92633132 | Msa0388240:CDS | 40.0% | |
| !! | GACTTCTAGAACTGATTGCA+AGG | + | chr3_1:92633239-92633258 | Msa0388240:CDS | 40.0% |
| ! | GTGTTTCAAAAGCATGGAAG+AGG | + | chr3_1:92633271-92633290 | Msa0388240:CDS | 40.0% |
| TGTTGAGAAGTTTGATGAGG+AGG | + | chr3_1:92633407-92633426 | Msa0388240:CDS | 40.0% | |
| GTTGAGAAGTTTGATGAGGA+GGG | + | chr3_1:92633408-92633427 | Msa0388240:CDS | 40.0% | |
| ATTTCAGCAACCTTTCCTGT+AGG | - | chr3_1:92633438-92633457 | None:intergenic | 40.0% | |
| GCTGAAATGTTCAATAGTGG+AGG | + | chr3_1:92633450-92633469 | Msa0388240:CDS | 40.0% | |
| ! | AAATGGCATGAGGTACTTGT+TGG | - | chr3_1:92633724-92633743 | None:intergenic | 40.0% |
| !! | ATGCCATTTGCTCCTTTTGT+TGG | + | chr3_1:92633735-92633754 | Msa0388240:intron | 40.0% |
| !! | TGCCATTTGCTCCTTTTGTT+GGG | + | chr3_1:92633736-92633755 | Msa0388240:intron | 40.0% |
| AACCCAACAAAAGGAGCAAA+TGG | - | chr3_1:92633741-92633760 | None:intergenic | 40.0% | |
| ACATGGCTAAAGGCAATGAA+TGG | + | chr3_1:92633843-92633862 | Msa0388240:intron | 40.0% | |
| TGATCGGTTATTATCGACAC+AGG | - | chr3_1:92633876-92633895 | None:intergenic | 40.0% | |
| CATAATCGGTGACGAGTATT+TGG | - | chr3_1:92633936-92633955 | None:intergenic | 40.0% | |
| ! | GCTTTTCGGCAAATTTTCTG+CGG | - | chr3_1:92633971-92633990 | None:intergenic | 40.0% |
| AGTGAAATATGACAAGGCAG+TGG | + | chr3_1:92634280-92634299 | Msa0388240:CDS | 40.0% | |
| !!! | TGTCGACAACATTTTTGGCT+TGG | - | chr3_1:92634637-92634656 | None:intergenic | 40.0% |
| TGCTGAACTGTTGTTCTCAA+AGG | - | chr3_1:92634741-92634760 | None:intergenic | 40.0% | |
| GTAACAAGAGAGACTCAACA+TGG | + | chr3_1:92635028-92635047 | Msa0388240:CDS | 40.0% | |
| TAATTGGCAACTTCTCCTCT+TGG | - | chr3_1:92635098-92635117 | None:intergenic | 40.0% | |
| AGGAGAAGTTGCCAATTATG+TGG | + | chr3_1:92635100-92635119 | Msa0388240:CDS | 40.0% | |
| TGAAGGGGTTTCTAAACCAT+TGG | - | chr3_1:92632962-92632981 | None:intergenic | 40.0% | |
| CCAATACGAGGATGAAGATT+AGG | - | chr3_1:92633024-92633043 | None:intergenic | 40.0% | |
| CCTAATCTTCATCCTCGTAT+TGG | + | chr3_1:92633021-92633040 | Msa0388240:CDS | 40.0% | |
| TCTTCATCCTCGTATTGGAA+TGG | + | chr3_1:92633026-92633045 | Msa0388240:CDS | 40.0% | |
| AATTCGAACTCGTACAACCA+AGG | + | chr3_1:92633113-92633132 | Msa0388240:CDS | 40.0% | |
| !! | GACTTCTAGAACTGATTGCA+AGG | + | chr3_1:92633239-92633258 | Msa0388240:CDS | 40.0% |
| ! | GTGTTTCAAAAGCATGGAAG+AGG | + | chr3_1:92633271-92633290 | Msa0388240:CDS | 40.0% |
| TGTTGAGAAGTTTGATGAGG+AGG | + | chr3_1:92633407-92633426 | Msa0388240:CDS | 40.0% | |
| GTTGAGAAGTTTGATGAGGA+GGG | + | chr3_1:92633408-92633427 | Msa0388240:CDS | 40.0% | |
| ATTTCAGCAACCTTTCCTGT+AGG | - | chr3_1:92633438-92633457 | None:intergenic | 40.0% | |
| GCTGAAATGTTCAATAGTGG+AGG | + | chr3_1:92633450-92633469 | Msa0388240:CDS | 40.0% | |
| ! | AAATGGCATGAGGTACTTGT+TGG | - | chr3_1:92633724-92633743 | None:intergenic | 40.0% |
| !! | ATGCCATTTGCTCCTTTTGT+TGG | + | chr3_1:92633735-92633754 | Msa0388240:intron | 40.0% |
| !! | TGCCATTTGCTCCTTTTGTT+GGG | + | chr3_1:92633736-92633755 | Msa0388240:intron | 40.0% |
| AACCCAACAAAAGGAGCAAA+TGG | - | chr3_1:92633741-92633760 | None:intergenic | 40.0% | |
| ACATGGCTAAAGGCAATGAA+TGG | + | chr3_1:92633843-92633862 | Msa0388240:intron | 40.0% | |
| TGATCGGTTATTATCGACAC+AGG | - | chr3_1:92633876-92633895 | None:intergenic | 40.0% | |
| CATAATCGGTGACGAGTATT+TGG | - | chr3_1:92633936-92633955 | None:intergenic | 40.0% | |
| ! | GCTTTTCGGCAAATTTTCTG+CGG | - | chr3_1:92633971-92633990 | None:intergenic | 40.0% |
| AGTGAAATATGACAAGGCAG+TGG | + | chr3_1:92634280-92634299 | Msa0388240:CDS | 40.0% | |
| !!! | TGTCGACAACATTTTTGGCT+TGG | - | chr3_1:92634637-92634656 | None:intergenic | 40.0% |
| TGCTGAACTGTTGTTCTCAA+AGG | - | chr3_1:92634741-92634760 | None:intergenic | 40.0% | |
| GTAACAAGAGAGACTCAACA+TGG | + | chr3_1:92635028-92635047 | Msa0388240:CDS | 40.0% | |
| TAATTGGCAACTTCTCCTCT+TGG | - | chr3_1:92635098-92635117 | None:intergenic | 40.0% | |
| AGGAGAAGTTGCCAATTATG+TGG | + | chr3_1:92635100-92635119 | Msa0388240:CDS | 40.0% | |
| !! | GCAATCAGTTCTAGAAGTCG+AGG | - | chr3_1:92633238-92633257 | None:intergenic | 45.0% |
| AAGCATGGAAGAGGAGCAAA+TGG | + | chr3_1:92633280-92633299 | Msa0388240:CDS | 45.0% | |
| AGAAAATGGGTATGCCAGCT+AGG | + | chr3_1:92633379-92633398 | Msa0388240:CDS | 45.0% | |
| TTCTCAACAAGACTCCTAGC+TGG | - | chr3_1:92633396-92633415 | None:intergenic | 45.0% | |
| CAAAAGGAGCAAATGGCATG+AGG | - | chr3_1:92633734-92633753 | None:intergenic | 45.0% | |
| GGATGTGCCACAAGCATAAT+CGG | - | chr3_1:92633950-92633969 | None:intergenic | 45.0% | |
| AAGGCGAATCAATGGCTTCA+AGG | + | chr3_1:92634113-92634132 | Msa0388240:CDS | 45.0% | |
| TCGAGACACATTCATTGTCC+AGG | + | chr3_1:92634526-92634545 | Msa0388240:CDS | 45.0% | |
| AGACACATTCATTGTCCAGG+TGG | + | chr3_1:92634529-92634548 | Msa0388240:CDS | 45.0% | |
| !! | CCTTTAGTTTGTGAACCACG+TGG | - | chr3_1:92634995-92635014 | None:intergenic | 45.0% |
| CCACGTGGTTCACAAACTAA+AGG | + | chr3_1:92634992-92635011 | Msa0388240:CDS | 45.0% | |
| TAACTCGATCACAAGCCAAG+AGG | + | chr3_1:92635080-92635099 | Msa0388240:CDS | 45.0% | |
| TGCCAATTATGTGGAGAGCA+TGG | + | chr3_1:92635109-92635128 | Msa0388240:CDS | 45.0% | |
| !! | GCAATCAGTTCTAGAAGTCG+AGG | - | chr3_1:92633238-92633257 | None:intergenic | 45.0% |
| AAGCATGGAAGAGGAGCAAA+TGG | + | chr3_1:92633280-92633299 | Msa0388240:CDS | 45.0% | |
| AGAAAATGGGTATGCCAGCT+AGG | + | chr3_1:92633379-92633398 | Msa0388240:CDS | 45.0% | |
| TTCTCAACAAGACTCCTAGC+TGG | - | chr3_1:92633396-92633415 | None:intergenic | 45.0% | |
| CAAAAGGAGCAAATGGCATG+AGG | - | chr3_1:92633734-92633753 | None:intergenic | 45.0% | |
| GGATGTGCCACAAGCATAAT+CGG | - | chr3_1:92633950-92633969 | None:intergenic | 45.0% | |
| AAGGCGAATCAATGGCTTCA+AGG | + | chr3_1:92634113-92634132 | Msa0388240:CDS | 45.0% | |
| TCGAGACACATTCATTGTCC+AGG | + | chr3_1:92634526-92634545 | Msa0388240:CDS | 45.0% | |
| AGACACATTCATTGTCCAGG+TGG | + | chr3_1:92634529-92634548 | Msa0388240:CDS | 45.0% | |
| !! | CCTTTAGTTTGTGAACCACG+TGG | - | chr3_1:92634995-92635014 | None:intergenic | 45.0% |
| CCACGTGGTTCACAAACTAA+AGG | + | chr3_1:92634992-92635011 | Msa0388240:CDS | 45.0% | |
| TAACTCGATCACAAGCCAAG+AGG | + | chr3_1:92635080-92635099 | Msa0388240:CDS | 45.0% | |
| TGCCAATTATGTGGAGAGCA+TGG | + | chr3_1:92635109-92635128 | Msa0388240:CDS | 45.0% | |
| GATGAGGAGGGAATACCTAC+AGG | + | chr3_1:92633420-92633439 | Msa0388240:CDS | 50.0% | |
| GGAGGGAATACCTACAGGAA+AGG | + | chr3_1:92633425-92633444 | Msa0388240:CDS | 50.0% | |
| GGTGGATGCAAGATCGAGAT+TGG | + | chr3_1:92633650-92633669 | Msa0388240:intron | 50.0% | |
| ! | CTCGTCACCGATTATGCTTG+TGG | + | chr3_1:92633940-92633959 | Msa0388240:intron | 50.0% |
| GTCTCGAGAGTCATAACAGC+TGG | - | chr3_1:92634513-92634532 | None:intergenic | 50.0% | |
| CCTTTGTGTCAAGATCCACC+TGG | - | chr3_1:92634547-92634566 | None:intergenic | 50.0% | |
| CCAGGTGGATCTTGACACAA+AGG | + | chr3_1:92634544-92634563 | Msa0388240:CDS | 50.0% | |
| GGCCATGCTCTCCACATAAT+TGG | - | chr3_1:92635114-92635133 | None:intergenic | 50.0% | |
| ! | GTTTGCAACTACGCCGATTG+TGG | - | chr3_1:92635135-92635154 | None:intergenic | 50.0% |
| GATGAGGAGGGAATACCTAC+AGG | + | chr3_1:92633420-92633439 | Msa0388240:CDS | 50.0% | |
| GGAGGGAATACCTACAGGAA+AGG | + | chr3_1:92633425-92633444 | Msa0388240:CDS | 50.0% | |
| GGTGGATGCAAGATCGAGAT+TGG | + | chr3_1:92633650-92633669 | Msa0388240:intron | 50.0% | |
| ! | CTCGTCACCGATTATGCTTG+TGG | + | chr3_1:92633940-92633959 | Msa0388240:intron | 50.0% |
| GTCTCGAGAGTCATAACAGC+TGG | - | chr3_1:92634513-92634532 | None:intergenic | 50.0% | |
| CCTTTGTGTCAAGATCCACC+TGG | - | chr3_1:92634547-92634566 | None:intergenic | 50.0% | |
| CCAGGTGGATCTTGACACAA+AGG | + | chr3_1:92634544-92634563 | Msa0388240:CDS | 50.0% | |
| GGCCATGCTCTCCACATAAT+TGG | - | chr3_1:92635114-92635133 | None:intergenic | 50.0% | |
| ! | GTTTGCAACTACGCCGATTG+TGG | - | chr3_1:92635135-92635154 | None:intergenic | 50.0% |
| ! | GTGGAGAGCATGGCCACAAT+CGG | + | chr3_1:92635119-92635138 | Msa0388240:CDS | 55.0% |
| ! | GTGGAGAGCATGGCCACAAT+CGG | + | chr3_1:92635119-92635138 | Msa0388240:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 92632886 | 92635183 | 92632886 | ID=Msa0388240;Name=Msa0388240 |
| chr3_1 | mRNA | 92632886 | 92635183 | 92632886 | ID=Msa0388240-mRNA-1;Parent=Msa0388240;Name=Msa0388240-mRNA-1;_AED=0.05;_eAED=0.15;_QI=0|0|0|1|1|1|2|0|566 |
| chr3_1 | exon | 92632886 | 92633471 | 92632886 | ID=Msa0388240-mRNA-1:exon:26048;Parent=Msa0388240-mRNA-1 |
| chr3_1 | exon | 92634069 | 92635183 | 92634069 | ID=Msa0388240-mRNA-1:exon:26049;Parent=Msa0388240-mRNA-1 |
| chr3_1 | CDS | 92632886 | 92633471 | 92632886 | ID=Msa0388240-mRNA-1:cds;Parent=Msa0388240-mRNA-1 |
| chr3_1 | CDS | 92634069 | 92635183 | 92634069 | ID=Msa0388240-mRNA-1:cds;Parent=Msa0388240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
