Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389670 | KEH33319.1 | 89.286 | 196 | 17 | 2 | 1 | 196 | 1 | 192 | 6.36e-125 | 360 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389670 | sp|Q9M9U9|RKD1_ARATH | 62.500 | 128 | 41 | 2 | 48 | 168 | 112 | 239 | 7.29e-50 | 165 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389670 | A0A072UU07 | 89.286 | 196 | 17 | 2 | 1 | 196 | 1 | 192 | 3.04e-125 | 360 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0389670 | TF | RWP-RK |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389670 | MtrunA17_Chr3g0092141 | 89.286 | 196 | 17 | 2 | 1 | 196 | 1 | 192 | 5.85e-129 | 360 |
| Msa0389670 | MtrunA17_Chr4g0060761 | 53.889 | 180 | 66 | 6 | 5 | 175 | 101 | 272 | 1.29e-55 | 177 |
| Msa0389670 | MtrunA17_Chr3g0127001 | 49.107 | 112 | 51 | 1 | 61 | 172 | 154 | 259 | 5.55e-31 | 114 |
| Msa0389670 | MtrunA17_Chr1g0182631 | 47.321 | 112 | 53 | 1 | 61 | 172 | 127 | 232 | 6.65e-29 | 107 |
| Msa0389670 | MtrunA17_Chr5g0406901 | 36.719 | 128 | 73 | 2 | 47 | 167 | 188 | 314 | 1.88e-22 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389670 | AT1G18790.1 | 62.500 | 128 | 41 | 2 | 48 | 168 | 112 | 239 | 7.41e-51 | 165 |
| Msa0389670 | AT1G74480.1 | 59.649 | 114 | 42 | 1 | 55 | 164 | 129 | 242 | 3.06e-43 | 147 |
| Msa0389670 | AT5G66990.1 | 50.746 | 134 | 59 | 2 | 42 | 170 | 142 | 273 | 8.75e-42 | 142 |
| Msa0389670 | AT5G53040.1 | 55.340 | 103 | 40 | 2 | 66 | 168 | 153 | 249 | 1.99e-31 | 115 |
| Msa0389670 | AT4G35590.2 | 37.313 | 134 | 72 | 2 | 61 | 187 | 192 | 320 | 1.84e-19 | 84.7 |
| Msa0389670 | AT4G35590.1 | 38.060 | 134 | 71 | 3 | 61 | 187 | 242 | 370 | 2.75e-19 | 84.7 |
Find 37 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACTTGTACATTCTTTATA+AGG | 0.172964 | 3_1:-94666841 | None:intergenic |
| AATTATTCAATGACAGACTA+TGG | 0.286299 | 3_1:+94666503 | None:intergenic |
| TCTCTAGCAGCTTGAGATAT+TGG | 0.323623 | 3_1:-94666728 | None:intergenic |
| AAGAAAAGGTGTAGGGATCT+TGG | 0.330015 | 3_1:+94666776 | Msa0389670:CDS |
| TCAATGACAGACTATGGTTA+TGG | 0.334072 | 3_1:+94666509 | None:intergenic |
| GCTCATGGTTATGAGGTTAA+TGG | 0.347444 | 3_1:+94667578 | Msa0389670:CDS |
| TACTTGTACATTCTTTATAA+GGG | 0.359802 | 3_1:-94666840 | None:intergenic |
| AGTTGATGCTGGATATTATT+CGG | 0.383233 | 3_1:+94666565 | Msa0389670:CDS |
| GGCTTACACATTTGAAGAAA+AGG | 0.415724 | 3_1:+94666762 | Msa0389670:CDS |
| CAATGACAGACTATGGTTAT+GGG | 0.417103 | 3_1:+94666510 | None:intergenic |
| CATTCTTTATAAGGGTTTGA+AGG | 0.417292 | 3_1:-94666832 | None:intergenic |
| TATGAGGTTAATGGAACAAC+AGG | 0.443913 | 3_1:+94667587 | Msa0389670:CDS |
| CTGCTAGAGACCTTAATGTT+GGG | 0.489436 | 3_1:+94666741 | Msa0389670:CDS |
| GAAAGAAATGAAGAAGGTAG+AGG | 0.489935 | 3_1:+94667476 | Msa0389670:CDS |
| ATGAATGTGATGAGAAGATA+AGG | 0.493501 | 3_1:+94667433 | Msa0389670:CDS |
| GCTTAGACAAGCATGTTTCA+AGG | 0.510842 | 3_1:+94667536 | Msa0389670:CDS |
| ATTGCAGAAAGAAATGAAGA+AGG | 0.517898 | 3_1:+94667470 | Msa0389670:CDS |
| AGAGAAGGCTCATGGTTATG+AGG | 0.522137 | 3_1:+94667571 | Msa0389670:CDS |
| GCTGCTAGAGACCTTAATGT+TGG | 0.523622 | 3_1:+94666740 | Msa0389670:CDS |
| AATGTGTAAGCCCAACATTA+AGG | 0.530566 | 3_1:-94666751 | None:intergenic |
| CACATTTGAAGAAAAGGTGT+AGG | 0.540159 | 3_1:+94666768 | Msa0389670:CDS |
| GAATTCAAAGGTGGCCACAT+AGG | 0.544869 | 3_1:+94666798 | Msa0389670:CDS |
| ATGTGGAATGAAGTTGATGC+TGG | 0.550987 | 3_1:+94666554 | Msa0389670:CDS |
| TACTGGAGAAAATGTTGCAA+AGG | 0.556786 | 3_1:+94666616 | Msa0389670:CDS |
| AGGCTAATTACAAGAAGAGA+AGG | 0.568624 | 3_1:+94667556 | Msa0389670:CDS |
| AGGCTCATTAGTTTCCTATG+TGG | 0.571114 | 3_1:-94666812 | None:intergenic |
| TGTTGCAAAGGAAATTGTGA+AGG | 0.572064 | 3_1:+94666628 | Msa0389670:CDS |
| ACATTTGAAGAAAAGGTGTA+GGG | 0.575896 | 3_1:+94666769 | Msa0389670:CDS |
| TTATTGGTGGTGCAGGAGCA+AGG | 0.586794 | 3_1:+94667408 | Msa0389670:intron |
| AACTTGATGAAAACACAAAG+AGG | 0.589787 | 3_1:+94667514 | Msa0389670:CDS |
| TTACAAGAAGAGAAGGCTCA+TGG | 0.590126 | 3_1:+94667563 | Msa0389670:CDS |
| GTAGGGATCTTGGAATTCAA+AGG | 0.603743 | 3_1:+94666786 | Msa0389670:CDS |
| AATGACAGACTATGGTTATG+GGG | 0.605489 | 3_1:+94666511 | None:intergenic |
| GTTGCAAAGGAAATTGTGAA+GGG | 0.628143 | 3_1:+94666629 | Msa0389670:CDS |
| GCATCAACTTCATTCCACAT+TGG | 0.632538 | 3_1:-94666551 | None:intergenic |
| TGAGAAGATAAGGAATGCTG+TGG | 0.656309 | 3_1:+94667443 | Msa0389670:CDS |
| GGGATCTTGGAATTCAAAGG+TGG | 0.676630 | 3_1:+94666789 | Msa0389670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATTTTTATTTTTTTA+CGG | + | chr3_1:94667269-94667288 | Msa0389670:intron | 0.0% |
| !!! | TATTTATTTTTATTTTTTTA+CGG | + | chr3_1:94667269-94667288 | Msa0389670:intron | 0.0% |
| !!! | ATTTTTTTTACTAATTTTTG+TGG | + | chr3_1:94667206-94667225 | Msa0389670:intron | 10.0% |
| !!! | ATTTTTTTTACTAATTTTTG+TGG | + | chr3_1:94667206-94667225 | Msa0389670:intron | 10.0% |
| !! | ATTGCAAACTAAAAAAATAT+TGG | - | chr3_1:94666870-94666889 | None:intergenic | 15.0% |
| !!! | AGTAAGAATGAAAAATATTT+TGG | - | chr3_1:94667053-94667072 | None:intergenic | 15.0% |
| !!! | TTGAAACGTTTTATTATTAT+TGG | + | chr3_1:94667392-94667411 | Msa0389670:intron | 15.0% |
| !! | ATTGCAAACTAAAAAAATAT+TGG | - | chr3_1:94666870-94666889 | None:intergenic | 15.0% |
| !!! | AGTAAGAATGAAAAATATTT+TGG | - | chr3_1:94667053-94667072 | None:intergenic | 15.0% |
| !!! | TTGAAACGTTTTATTATTAT+TGG | + | chr3_1:94667392-94667411 | Msa0389670:intron | 15.0% |
| !! | TACTTGTACATTCTTTATAA+GGG | - | chr3_1:94666843-94666862 | None:intergenic | 20.0% |
| !! | TTACTTGTACATTCTTTATA+AGG | - | chr3_1:94666844-94666863 | None:intergenic | 20.0% |
| !!! | TTCATTCTTACTTATTTTTG+TGG | + | chr3_1:94667061-94667080 | Msa0389670:intron | 20.0% |
| !!! | AAACGTTTTATTATTATTGG+TGG | + | chr3_1:94667395-94667414 | Msa0389670:intron | 20.0% |
| !! | TACTTGTACATTCTTTATAA+GGG | - | chr3_1:94666843-94666862 | None:intergenic | 20.0% |
| !! | TTACTTGTACATTCTTTATA+AGG | - | chr3_1:94666844-94666863 | None:intergenic | 20.0% |
| !!! | TTCATTCTTACTTATTTTTG+TGG | + | chr3_1:94667061-94667080 | Msa0389670:intron | 20.0% |
| !!! | AAACGTTTTATTATTATTGG+TGG | + | chr3_1:94667395-94667414 | Msa0389670:intron | 20.0% |
| !! | TTAGTGATGGAATTAAAGAT+CGG | - | chr3_1:94666976-94666995 | None:intergenic | 25.0% |
| !! | AATTCCATCACTAAATTTTG+CGG | + | chr3_1:94666982-94667001 | Msa0389670:intron | 25.0% |
| !!! | GAATGAAAAATATTTTGGCA+AGG | - | chr3_1:94667048-94667067 | None:intergenic | 25.0% |
| !!! | TGTAGTGAATTGTTTTAATG+TGG | + | chr3_1:94667108-94667127 | Msa0389670:intron | 25.0% |
| !!! | AATGTGGATTACTTTTTTTG+TGG | + | chr3_1:94667124-94667143 | Msa0389670:intron | 25.0% |
| !!! | TTACTTTTTTTGTGGCTTTT+TGG | + | chr3_1:94667132-94667151 | Msa0389670:intron | 25.0% |
| !! | TTAGTGATGGAATTAAAGAT+CGG | - | chr3_1:94666976-94666995 | None:intergenic | 25.0% |
| !! | AATTCCATCACTAAATTTTG+CGG | + | chr3_1:94666982-94667001 | Msa0389670:intron | 25.0% |
| !!! | GAATGAAAAATATTTTGGCA+AGG | - | chr3_1:94667048-94667067 | None:intergenic | 25.0% |
| !!! | TGTAGTGAATTGTTTTAATG+TGG | + | chr3_1:94667108-94667127 | Msa0389670:intron | 25.0% |
| !!! | AATGTGGATTACTTTTTTTG+TGG | + | chr3_1:94667124-94667143 | Msa0389670:intron | 25.0% |
| !!! | TTACTTTTTTTGTGGCTTTT+TGG | + | chr3_1:94667132-94667151 | Msa0389670:intron | 25.0% |
| ! | AGTTGATGCTGGATATTATT+CGG | + | chr3_1:94666565-94666584 | Msa0389670:CDS | 30.0% |
| ! | TTTTCGATTAGCAACATTAC+TGG | + | chr3_1:94666599-94666618 | Msa0389670:CDS | 30.0% |
| ! | ACATTTGAAGAAAAGGTGTA+GGG | + | chr3_1:94666769-94666788 | Msa0389670:CDS | 30.0% |
| CATTCTTTATAAGGGTTTGA+AGG | - | chr3_1:94666835-94666854 | None:intergenic | 30.0% | |
| !! | TGGAATTAAAGATCGGTTTT+AGG | - | chr3_1:94666969-94666988 | None:intergenic | 30.0% |
| ! | TGCAAGCAAATCATGATTTT+AGG | - | chr3_1:94667174-94667193 | None:intergenic | 30.0% |
| TTGATTTAGCTAGCAAATCA+TGG | - | chr3_1:94667307-94667326 | None:intergenic | 30.0% | |
| !! | TTTATTATTATTGGTGGTGC+AGG | + | chr3_1:94667401-94667420 | Msa0389670:intron | 30.0% |
| ATGAATGTGATGAGAAGATA+AGG | + | chr3_1:94667433-94667452 | Msa0389670:CDS | 30.0% | |
| ATTGCAGAAAGAAATGAAGA+AGG | + | chr3_1:94667470-94667489 | Msa0389670:CDS | 30.0% | |
| !! | TTTTCATCAAGTTGCAAATC+TGG | - | chr3_1:94667507-94667526 | None:intergenic | 30.0% |
| AACTTGATGAAAACACAAAG+AGG | + | chr3_1:94667514-94667533 | Msa0389670:CDS | 30.0% | |
| ! | AGTTGATGCTGGATATTATT+CGG | + | chr3_1:94666565-94666584 | Msa0389670:CDS | 30.0% |
| ! | TTTTCGATTAGCAACATTAC+TGG | + | chr3_1:94666599-94666618 | Msa0389670:CDS | 30.0% |
| ! | ACATTTGAAGAAAAGGTGTA+GGG | + | chr3_1:94666769-94666788 | Msa0389670:CDS | 30.0% |
| CATTCTTTATAAGGGTTTGA+AGG | - | chr3_1:94666835-94666854 | None:intergenic | 30.0% | |
| !! | TGGAATTAAAGATCGGTTTT+AGG | - | chr3_1:94666969-94666988 | None:intergenic | 30.0% |
| ! | TGCAAGCAAATCATGATTTT+AGG | - | chr3_1:94667174-94667193 | None:intergenic | 30.0% |
| TTGATTTAGCTAGCAAATCA+TGG | - | chr3_1:94667307-94667326 | None:intergenic | 30.0% | |
| !! | TTTATTATTATTGGTGGTGC+AGG | + | chr3_1:94667401-94667420 | Msa0389670:intron | 30.0% |
| ATGAATGTGATGAGAAGATA+AGG | + | chr3_1:94667433-94667452 | Msa0389670:CDS | 30.0% | |
| ATTGCAGAAAGAAATGAAGA+AGG | + | chr3_1:94667470-94667489 | Msa0389670:CDS | 30.0% | |
| !! | TTTTCATCAAGTTGCAAATC+TGG | - | chr3_1:94667507-94667526 | None:intergenic | 30.0% |
| AACTTGATGAAAACACAAAG+AGG | + | chr3_1:94667514-94667533 | Msa0389670:CDS | 30.0% | |
| TTATGGGGATGCTAAAAATG+TGG | + | chr3_1:94666526-94666545 | Msa0389670:CDS | 35.0% | |
| CTAAAAATGTGGTTCCAATG+TGG | + | chr3_1:94666537-94666556 | Msa0389670:CDS | 35.0% | |
| TACTGGAGAAAATGTTGCAA+AGG | + | chr3_1:94666616-94666635 | Msa0389670:CDS | 35.0% | |
| TGTTGCAAAGGAAATTGTGA+AGG | + | chr3_1:94666628-94666647 | Msa0389670:CDS | 35.0% | |
| GTTGCAAAGGAAATTGTGAA+GGG | + | chr3_1:94666629-94666648 | Msa0389670:CDS | 35.0% | |
| AATGTGTAAGCCCAACATTA+AGG | - | chr3_1:94666754-94666773 | None:intergenic | 35.0% | |
| GGCTTACACATTTGAAGAAA+AGG | + | chr3_1:94666762-94666781 | Msa0389670:CDS | 35.0% | |
| ! | CACATTTGAAGAAAAGGTGT+AGG | + | chr3_1:94666768-94666787 | Msa0389670:CDS | 35.0% |
| CATAATCACATTGTGTAGTG+AGG | + | chr3_1:94666923-94666942 | Msa0389670:intron | 35.0% | |
| ! | GGCAAGGAAATCATGATTTT+AGG | - | chr3_1:94667032-94667051 | None:intergenic | 35.0% |
| !! | TTTTGTGGCTTTTTGGTAAG+CGG | + | chr3_1:94667139-94667158 | Msa0389670:intron | 35.0% |
| GAAAGAAATGAAGAAGGTAG+AGG | + | chr3_1:94667476-94667495 | Msa0389670:CDS | 35.0% | |
| AGGCTAATTACAAGAAGAGA+AGG | + | chr3_1:94667556-94667575 | Msa0389670:CDS | 35.0% | |
| TATGAGGTTAATGGAACAAC+AGG | + | chr3_1:94667587-94667606 | Msa0389670:CDS | 35.0% | |
| TTATGGGGATGCTAAAAATG+TGG | + | chr3_1:94666526-94666545 | Msa0389670:CDS | 35.0% | |
| CTAAAAATGTGGTTCCAATG+TGG | + | chr3_1:94666537-94666556 | Msa0389670:CDS | 35.0% | |
| TACTGGAGAAAATGTTGCAA+AGG | + | chr3_1:94666616-94666635 | Msa0389670:CDS | 35.0% | |
| TGTTGCAAAGGAAATTGTGA+AGG | + | chr3_1:94666628-94666647 | Msa0389670:CDS | 35.0% | |
| GTTGCAAAGGAAATTGTGAA+GGG | + | chr3_1:94666629-94666648 | Msa0389670:CDS | 35.0% | |
| AATGTGTAAGCCCAACATTA+AGG | - | chr3_1:94666754-94666773 | None:intergenic | 35.0% | |
| GGCTTACACATTTGAAGAAA+AGG | + | chr3_1:94666762-94666781 | Msa0389670:CDS | 35.0% | |
| ! | CACATTTGAAGAAAAGGTGT+AGG | + | chr3_1:94666768-94666787 | Msa0389670:CDS | 35.0% |
| CATAATCACATTGTGTAGTG+AGG | + | chr3_1:94666923-94666942 | Msa0389670:intron | 35.0% | |
| ! | GGCAAGGAAATCATGATTTT+AGG | - | chr3_1:94667032-94667051 | None:intergenic | 35.0% |
| !! | TTTTGTGGCTTTTTGGTAAG+CGG | + | chr3_1:94667139-94667158 | Msa0389670:intron | 35.0% |
| GAAAGAAATGAAGAAGGTAG+AGG | + | chr3_1:94667476-94667495 | Msa0389670:CDS | 35.0% | |
| AGGCTAATTACAAGAAGAGA+AGG | + | chr3_1:94667556-94667575 | Msa0389670:CDS | 35.0% | |
| TATGAGGTTAATGGAACAAC+AGG | + | chr3_1:94667587-94667606 | Msa0389670:CDS | 35.0% | |
| GCATCAACTTCATTCCACAT+TGG | - | chr3_1:94666554-94666573 | None:intergenic | 40.0% | |
| !! | ATGTGGAATGAAGTTGATGC+TGG | + | chr3_1:94666554-94666573 | Msa0389670:CDS | 40.0% |
| TCTCTAGCAGCTTGAGATAT+TGG | - | chr3_1:94666731-94666750 | None:intergenic | 40.0% | |
| CTGCTAGAGACCTTAATGTT+GGG | + | chr3_1:94666741-94666760 | Msa0389670:CDS | 40.0% | |
| ! | AAGAAAAGGTGTAGGGATCT+TGG | + | chr3_1:94666776-94666795 | Msa0389670:CDS | 40.0% |
| GTAGGGATCTTGGAATTCAA+AGG | + | chr3_1:94666786-94666805 | Msa0389670:CDS | 40.0% | |
| ! | AGGCTCATTAGTTTCCTATG+TGG | - | chr3_1:94666815-94666834 | None:intergenic | 40.0% |
| CAAGCCGCAAAATTTAGTGA+TGG | - | chr3_1:94666989-94667008 | None:intergenic | 40.0% | |
| ! | CATCACTAAATTTTGCGGCT+TGG | + | chr3_1:94666987-94667006 | Msa0389670:intron | 40.0% |
| TGAGAAGATAAGGAATGCTG+TGG | + | chr3_1:94667443-94667462 | Msa0389670:CDS | 40.0% | |
| GCTTAGACAAGCATGTTTCA+AGG | + | chr3_1:94667536-94667555 | Msa0389670:CDS | 40.0% | |
| TTACAAGAAGAGAAGGCTCA+TGG | + | chr3_1:94667563-94667582 | Msa0389670:CDS | 40.0% | |
| GCTCATGGTTATGAGGTTAA+TGG | + | chr3_1:94667578-94667597 | Msa0389670:CDS | 40.0% | |
| GCATCAACTTCATTCCACAT+TGG | - | chr3_1:94666554-94666573 | None:intergenic | 40.0% | |
| !! | ATGTGGAATGAAGTTGATGC+TGG | + | chr3_1:94666554-94666573 | Msa0389670:CDS | 40.0% |
| TCTCTAGCAGCTTGAGATAT+TGG | - | chr3_1:94666731-94666750 | None:intergenic | 40.0% | |
| CTGCTAGAGACCTTAATGTT+GGG | + | chr3_1:94666741-94666760 | Msa0389670:CDS | 40.0% | |
| ! | AAGAAAAGGTGTAGGGATCT+TGG | + | chr3_1:94666776-94666795 | Msa0389670:CDS | 40.0% |
| GTAGGGATCTTGGAATTCAA+AGG | + | chr3_1:94666786-94666805 | Msa0389670:CDS | 40.0% | |
| ! | AGGCTCATTAGTTTCCTATG+TGG | - | chr3_1:94666815-94666834 | None:intergenic | 40.0% |
| CAAGCCGCAAAATTTAGTGA+TGG | - | chr3_1:94666989-94667008 | None:intergenic | 40.0% | |
| ! | CATCACTAAATTTTGCGGCT+TGG | + | chr3_1:94666987-94667006 | Msa0389670:intron | 40.0% |
| TGAGAAGATAAGGAATGCTG+TGG | + | chr3_1:94667443-94667462 | Msa0389670:CDS | 40.0% | |
| GCTTAGACAAGCATGTTTCA+AGG | + | chr3_1:94667536-94667555 | Msa0389670:CDS | 40.0% | |
| TTACAAGAAGAGAAGGCTCA+TGG | + | chr3_1:94667563-94667582 | Msa0389670:CDS | 40.0% | |
| GCTCATGGTTATGAGGTTAA+TGG | + | chr3_1:94667578-94667597 | Msa0389670:CDS | 40.0% | |
| GCTGCTAGAGACCTTAATGT+TGG | + | chr3_1:94666740-94666759 | Msa0389670:CDS | 45.0% | |
| GGGATCTTGGAATTCAAAGG+TGG | + | chr3_1:94666789-94666808 | Msa0389670:CDS | 45.0% | |
| GAATTCAAAGGTGGCCACAT+AGG | + | chr3_1:94666798-94666817 | Msa0389670:CDS | 45.0% | |
| !! | CACTAAATTTTGCGGCTTGG+TGG | + | chr3_1:94666990-94667009 | Msa0389670:intron | 45.0% |
| AGAGAAGGCTCATGGTTATG+AGG | + | chr3_1:94667571-94667590 | Msa0389670:CDS | 45.0% | |
| GCTGCTAGAGACCTTAATGT+TGG | + | chr3_1:94666740-94666759 | Msa0389670:CDS | 45.0% | |
| GGGATCTTGGAATTCAAAGG+TGG | + | chr3_1:94666789-94666808 | Msa0389670:CDS | 45.0% | |
| GAATTCAAAGGTGGCCACAT+AGG | + | chr3_1:94666798-94666817 | Msa0389670:CDS | 45.0% | |
| !! | CACTAAATTTTGCGGCTTGG+TGG | + | chr3_1:94666990-94667009 | Msa0389670:intron | 45.0% |
| AGAGAAGGCTCATGGTTATG+AGG | + | chr3_1:94667571-94667590 | Msa0389670:CDS | 45.0% | |
| !! | TTATTGGTGGTGCAGGAGCA+AGG | + | chr3_1:94667408-94667427 | Msa0389670:intron | 50.0% |
| !! | TTATTGGTGGTGCAGGAGCA+AGG | + | chr3_1:94667408-94667427 | Msa0389670:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 94666512 | 94667680 | 94666512 | ID=Msa0389670;Name=Msa0389670 |
| chr3_1 | mRNA | 94666512 | 94667680 | 94666512 | ID=Msa0389670-mRNA-1;Parent=Msa0389670;Name=Msa0389670-mRNA-1;_AED=0.04;_eAED=0.06;_QI=0|0|0|1|1|1|2|0|201 |
| chr3_1 | exon | 94666512 | 94666859 | 94666512 | ID=Msa0389670-mRNA-1:exon:26912;Parent=Msa0389670-mRNA-1 |
| chr3_1 | exon | 94667423 | 94667680 | 94667423 | ID=Msa0389670-mRNA-1:exon:26913;Parent=Msa0389670-mRNA-1 |
| chr3_1 | CDS | 94666512 | 94666859 | 94666512 | ID=Msa0389670-mRNA-1:cds;Parent=Msa0389670-mRNA-1 |
| chr3_1 | CDS | 94667423 | 94667680 | 94667423 | ID=Msa0389670-mRNA-1:cds;Parent=Msa0389670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
