Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0390650 | KEH27239.1 | 77.970 | 404 | 45 | 3 | 81 | 482 | 1 | 362 | 0.0 | 624 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0390650 | sp|Q9SZL8|FRS5_ARATH | 26.756 | 299 | 190 | 7 | 52 | 343 | 74 | 350 | 2.27e-24 | 112 |
| Msa0390650 | sp|Q9SZL8|FRS5_ARATH | 25.000 | 216 | 126 | 6 | 335 | 532 | 440 | 637 | 2.19e-12 | 73.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0390650 | A0A072UBP1 | 77.970 | 404 | 45 | 3 | 81 | 482 | 1 | 362 | 0.0 | 624 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0390650 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0390650 | MtrunA17_Chr3g0088371 | 89.216 | 102 | 11 | 0 | 485 | 586 | 1 | 102 | 1.23e-57 | 192 |
| Msa0390650 | MtrunA17_Chr1g0172971 | 76.515 | 132 | 16 | 1 | 1 | 132 | 1 | 117 | 2.93e-56 | 199 |
| Msa0390650 | MtrunA17_Chr6g0475591 | 95.890 | 73 | 3 | 0 | 204 | 276 | 1 | 73 | 4.12e-43 | 149 |
| Msa0390650 | MtrunA17_Chr7g0258861 | 32.463 | 268 | 159 | 5 | 46 | 310 | 2 | 250 | 2.96e-38 | 144 |
| Msa0390650 | MtrunA17_Chr2g0324011 | 29.801 | 302 | 187 | 7 | 47 | 343 | 3 | 284 | 3.27e-32 | 132 |
| Msa0390650 | MtrunA17_Chr2g0324011 | 27.426 | 237 | 140 | 7 | 310 | 532 | 353 | 571 | 4.51e-19 | 91.3 |
| Msa0390650 | MtrunA17_Chr3g0082121 | 28.369 | 282 | 184 | 6 | 311 | 587 | 380 | 648 | 1.68e-30 | 127 |
| Msa0390650 | MtrunA17_Chr3g0082121 | 29.252 | 294 | 177 | 8 | 57 | 347 | 49 | 314 | 4.50e-26 | 113 |
| Msa0390650 | MtrunA17_Chr5g0448761 | 26.000 | 300 | 201 | 6 | 53 | 347 | 62 | 345 | 4.88e-25 | 110 |
| Msa0390650 | MtrunA17_Chr1g0202341 | 26.936 | 297 | 195 | 6 | 53 | 347 | 53 | 329 | 6.70e-25 | 110 |
| Msa0390650 | MtrunA17_Chr1g0202341 | 29.148 | 223 | 138 | 7 | 315 | 529 | 399 | 609 | 3.16e-19 | 92.0 |
| Msa0390650 | MtrunA17_Chr2g0296781 | 26.910 | 301 | 190 | 7 | 55 | 351 | 1 | 275 | 1.53e-24 | 108 |
| Msa0390650 | MtrunA17_Chr2g0296781 | 25.806 | 279 | 169 | 10 | 313 | 571 | 338 | 598 | 5.44e-17 | 85.1 |
| Msa0390650 | MtrunA17_Chr1g0203721 | 25.157 | 318 | 187 | 8 | 21 | 310 | 11 | 305 | 1.98e-22 | 102 |
| Msa0390650 | MtrunA17_Chr1g0203721 | 25.994 | 327 | 203 | 12 | 293 | 601 | 394 | 699 | 9.66e-17 | 84.3 |
| Msa0390650 | MtrunA17_Chr8g0363841 | 26.774 | 310 | 198 | 9 | 56 | 360 | 22 | 307 | 2.29e-22 | 102 |
| Msa0390650 | MtrunA17_Chr8g0363841 | 28.448 | 232 | 144 | 4 | 311 | 532 | 361 | 580 | 1.88e-18 | 89.7 |
| Msa0390650 | MtrunA17_Chr1g0164591 | 29.902 | 204 | 130 | 4 | 147 | 347 | 1 | 194 | 1.11e-21 | 96.7 |
| Msa0390650 | MtrunA17_Chr5g0441581 | 23.580 | 352 | 224 | 9 | 39 | 388 | 25 | 333 | 5.61e-19 | 91.3 |
| Msa0390650 | MtrunA17_Chr5g0441581 | 27.203 | 261 | 159 | 8 | 338 | 581 | 387 | 633 | 2.08e-17 | 86.3 |
| Msa0390650 | MtrunA17_Chr2g0287651 | 26.190 | 294 | 192 | 6 | 21 | 310 | 45 | 317 | 3.87e-18 | 89.0 |
| Msa0390650 | MtrunA17_Chr2g0287651 | 23.009 | 226 | 147 | 5 | 316 | 529 | 422 | 632 | 3.47e-11 | 66.6 |
| Msa0390650 | MtrunA17_Chr1g0207551 | 24.903 | 257 | 170 | 4 | 338 | 585 | 399 | 641 | 1.68e-17 | 86.7 |
| Msa0390650 | MtrunA17_Chr3g0080351 | 26.599 | 297 | 172 | 11 | 307 | 585 | 407 | 675 | 2.06e-17 | 86.7 |
| Msa0390650 | MtrunA17_Chr6g0477261 | 30.323 | 155 | 106 | 1 | 196 | 348 | 7 | 161 | 3.32e-17 | 85.5 |
| Msa0390650 | MtrunA17_Chr6g0477261 | 25.448 | 279 | 170 | 10 | 313 | 571 | 227 | 487 | 7.33e-17 | 84.3 |
| Msa0390650 | MtrunA17_Chr6g0458391 | 27.626 | 257 | 143 | 7 | 57 | 310 | 231 | 447 | 1.81e-16 | 83.6 |
| Msa0390650 | MtrunA17_Chr1g0196541 | 23.077 | 338 | 223 | 8 | 55 | 388 | 1 | 305 | 4.73e-16 | 82.0 |
| Msa0390650 | MtrunA17_Chr1g0198761 | 24.290 | 317 | 213 | 8 | 37 | 343 | 33 | 332 | 1.88e-14 | 77.0 |
| Msa0390650 | MtrunA17_Chr5g0431001 | 24.138 | 348 | 230 | 11 | 29 | 366 | 39 | 362 | 2.92e-14 | 75.9 |
| Msa0390650 | MtrunA17_Chr1g0203051 | 23.673 | 245 | 168 | 3 | 66 | 310 | 94 | 319 | 4.74e-14 | 75.5 |
| Msa0390650 | MtrunA17_Chr2g0329031 | 24.490 | 196 | 136 | 3 | 335 | 525 | 369 | 557 | 1.63e-13 | 73.9 |
| Msa0390650 | MtrunA17_Chr2g0329031 | 24.606 | 317 | 193 | 12 | 33 | 343 | 3 | 279 | 1.35e-12 | 70.9 |
| Msa0390650 | MtrunA17_Chr2g0290391 | 25.455 | 275 | 168 | 9 | 45 | 303 | 44 | 297 | 5.06e-13 | 72.4 |
| Msa0390650 | MtrunA17_Chr2g0291591 | 25.461 | 271 | 152 | 11 | 53 | 310 | 66 | 299 | 6.30e-13 | 71.6 |
| Msa0390650 | MtrunA17_Chr2g0276841 | 23.695 | 249 | 170 | 6 | 65 | 310 | 84 | 315 | 1.65e-12 | 70.9 |
| Msa0390650 | MtrunA17_Chr5g0440451 | 22.857 | 280 | 193 | 8 | 315 | 586 | 396 | 660 | 2.28e-12 | 70.5 |
| Msa0390650 | MtrunA17_Chr3g0118611 | 24.723 | 271 | 157 | 10 | 338 | 586 | 312 | 557 | 6.78e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0390650 | AT4G38180.1 | 26.756 | 299 | 190 | 7 | 52 | 343 | 74 | 350 | 2.31e-25 | 112 |
| Msa0390650 | AT4G38180.1 | 25.000 | 216 | 126 | 6 | 335 | 532 | 440 | 637 | 2.22e-13 | 73.9 |
| Msa0390650 | AT4G15090.1 | 27.113 | 284 | 178 | 7 | 311 | 585 | 398 | 661 | 2.49e-22 | 102 |
| Msa0390650 | AT4G15090.5 | 27.113 | 284 | 178 | 7 | 311 | 585 | 398 | 661 | 2.49e-22 | 102 |
| Msa0390650 | AT4G15090.3 | 27.113 | 284 | 178 | 7 | 311 | 585 | 398 | 661 | 2.49e-22 | 102 |
| Msa0390650 | AT4G15090.2 | 27.113 | 284 | 178 | 7 | 311 | 585 | 398 | 661 | 2.49e-22 | 102 |
| Msa0390650 | AT4G15090.4 | 27.113 | 284 | 178 | 7 | 311 | 585 | 398 | 661 | 2.49e-22 | 102 |
| Msa0390650 | AT4G19990.5 | 25.781 | 256 | 166 | 7 | 315 | 561 | 348 | 588 | 2.84e-17 | 86.3 |
| Msa0390650 | AT4G19990.1 | 25.781 | 256 | 166 | 7 | 315 | 561 | 291 | 531 | 3.04e-17 | 86.3 |
| Msa0390650 | AT4G19990.7 | 25.781 | 256 | 166 | 7 | 315 | 561 | 362 | 602 | 3.06e-17 | 86.3 |
| Msa0390650 | AT4G19990.3 | 25.781 | 256 | 166 | 7 | 315 | 561 | 348 | 588 | 3.21e-17 | 86.3 |
| Msa0390650 | AT4G19990.4 | 25.781 | 256 | 166 | 7 | 315 | 561 | 348 | 588 | 3.21e-17 | 86.3 |
| Msa0390650 | AT4G19990.6 | 25.781 | 256 | 166 | 7 | 315 | 561 | 348 | 588 | 4.08e-17 | 85.9 |
| Msa0390650 | AT4G19990.2 | 25.781 | 256 | 166 | 7 | 315 | 561 | 348 | 588 | 4.08e-17 | 85.9 |
| Msa0390650 | AT3G22170.2 | 26.104 | 249 | 156 | 7 | 335 | 572 | 425 | 656 | 1.26e-15 | 81.3 |
| Msa0390650 | AT3G22170.1 | 26.104 | 249 | 156 | 7 | 335 | 572 | 425 | 656 | 1.26e-15 | 81.3 |
| Msa0390650 | AT5G28530.1 | 24.503 | 302 | 196 | 7 | 56 | 343 | 60 | 343 | 1.67e-15 | 80.9 |
| Msa0390650 | AT5G28530.3 | 24.503 | 302 | 196 | 7 | 56 | 343 | 60 | 343 | 1.96e-15 | 80.5 |
| Msa0390650 | AT5G28530.2 | 24.503 | 302 | 196 | 7 | 56 | 343 | 60 | 343 | 1.96e-15 | 80.5 |
| Msa0390650 | AT1G76320.3 | 27.477 | 222 | 144 | 5 | 313 | 529 | 335 | 544 | 2.41e-15 | 80.1 |
| Msa0390650 | AT1G76320.1 | 27.679 | 224 | 141 | 5 | 313 | 529 | 335 | 544 | 2.73e-15 | 80.1 |
| Msa0390650 | AT1G76320.4 | 27.679 | 224 | 141 | 5 | 313 | 529 | 335 | 544 | 2.73e-15 | 80.1 |
| Msa0390650 | AT1G76320.2 | 27.679 | 224 | 141 | 5 | 313 | 529 | 335 | 544 | 2.89e-15 | 80.1 |
| Msa0390650 | AT1G10240.2 | 22.556 | 266 | 186 | 7 | 48 | 310 | 45 | 293 | 3.98e-12 | 69.7 |
| Msa0390650 | AT1G10240.1 | 22.556 | 266 | 186 | 7 | 48 | 310 | 45 | 293 | 3.98e-12 | 69.7 |
Find 77 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 3_2:-1714859 | Msa0390650:CDS |
| TTTCTGTAACTTGGTGCTTT+TGG | 0.264317 | 3_2:-1713981 | Msa0390650:CDS |
| TCTGATGTTGTCCTGTTGTT+AGG | 0.288908 | 3_2:+1716584 | None:intergenic |
| GGTAATTATGCATATAAAAC+TGG | 0.302948 | 3_2:-1716728 | Msa0390650:CDS |
| CGATCATGATCTTCAAAACT+TGG | 0.305304 | 3_2:+1714519 | None:intergenic |
| TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 3_2:+1716393 | None:intergenic |
| CAACTAGATTATTCTCTATT+CGG | 0.323831 | 3_2:-1716077 | Msa0390650:CDS |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 3_2:+1716027 | None:intergenic |
| GAAGGCCTACTTCAGACTTT+AGG | 0.375686 | 3_2:-1715034 | Msa0390650:CDS |
| GAGGGATAATCATGCTGAAT+TGG | 0.376108 | 3_2:-1714826 | Msa0390650:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 3_2:-1716020 | Msa0390650:intron |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 3_2:-1716028 | Msa0390650:CDS |
| TACACGTGTTTGTGCAGATT+CGG | 0.390328 | 3_2:-1714199 | Msa0390650:CDS |
| GAGAACGTCTTATGAAGTTA+TGG | 0.394356 | 3_2:-1716318 | Msa0390650:CDS |
| TCATGCTGAATTGGACTTCA+AGG | 0.399206 | 3_2:-1714817 | Msa0390650:CDS |
| ATGTGTATAAGATATATAGA+TGG | 0.407680 | 3_2:-1716463 | Msa0390650:CDS |
| CATGTCGTATGTTTGAGAAC+AGG | 0.415108 | 3_2:-1714443 | Msa0390650:CDS |
| GAAGTTATGGGTCAAGGAGT+TGG | 0.428685 | 3_2:-1716305 | Msa0390650:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 3_2:-1716380 | Msa0390650:CDS |
| ACAAAATAAGAAATTTGATA+AGG | 0.431852 | 3_2:-1716666 | Msa0390650:CDS |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 3_2:-1716515 | Msa0390650:CDS |
| CTACACGGTGTTCTTGAAGC+TGG | 0.449082 | 3_2:-1714159 | Msa0390650:CDS |
| AACCGCATCAGCTGACTGTT+AGG | 0.450316 | 3_2:+1714765 | None:intergenic |
| TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | 3_2:-1714985 | Msa0390650:CDS |
| GTGATATCATTTCTGTAACT+TGG | 0.453435 | 3_2:-1713990 | Msa0390650:CDS |
| GCTCTTATAAATTCTAAAGC+TGG | 0.462891 | 3_2:-1716350 | Msa0390650:CDS |
| TCCATGATACTTTATTGCTA+GGG | 0.464004 | 3_2:+1716795 | None:intergenic |
| AGAACGTCTTATGAAGTTAT+GGG | 0.466325 | 3_2:-1716317 | Msa0390650:CDS |
| GTTTGCTTAATCCTAACAAC+AGG | 0.467124 | 3_2:-1716595 | Msa0390650:CDS |
| CGCTTTAAAACATATTGTCC+AGG | 0.471916 | 3_2:+1714342 | None:intergenic |
| TTGAAGATCTTGGAGTTCCT+AGG | 0.473596 | 3_2:-1714399 | Msa0390650:CDS |
| ATCATGATCGATTTGATGAA+AGG | 0.476999 | 3_2:-1714506 | Msa0390650:CDS |
| TACACGGTGTTCTTGAAGCT+GGG | 0.478647 | 3_2:-1714158 | Msa0390650:CDS |
| GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | 3_2:-1714986 | Msa0390650:CDS |
| TTTAAGTCTGAAAACCGAAA+AGG | 0.483010 | 3_2:+1716266 | None:intergenic |
| TTCCATGATACTTTATTGCT+AGG | 0.489989 | 3_2:+1716794 | None:intergenic |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 3_2:-1714845 | Msa0390650:CDS |
| CGTTATGTTTGTAACAAACA+AGG | 0.494754 | 3_2:-1716632 | Msa0390650:CDS |
| AGCTGGAATATCTTTGAAGC+TGG | 0.496270 | 3_2:-1716498 | Msa0390650:CDS |
| CCCCTAGCAATAAAGTATCA+TGG | 0.498381 | 3_2:-1716796 | Msa0390650:CDS |
| CTAAGGTAACATGAATGCTC+TGG | 0.504903 | 3_2:+1716410 | None:intergenic |
| TAACAAACAAGGTTTCAAGA+AGG | 0.511682 | 3_2:-1716621 | Msa0390650:CDS |
| TGCTTCTAAAACATCAACAT+TGG | 0.513630 | 3_2:+1714563 | None:intergenic |
| GAATGCTCTGGTTTATGTAA+TGG | 0.517705 | 3_2:+1716422 | None:intergenic |
| TTACAACCAACCCTTTCCTC+CGG | 0.518116 | 3_2:+1716521 | None:intergenic |
| TGTCTTCTGTAGCATCAACT+TGG | 0.520245 | 3_2:+1716132 | None:intergenic |
| TGTGTATAAGATATATAGAT+GGG | 0.523615 | 3_2:-1716462 | Msa0390650:CDS |
| GAAGATTATATGAATGTGCT+AGG | 0.531971 | 3_2:+1714031 | None:intergenic |
| GGCCTACTTCAGACTTTAGG+TGG | 0.536366 | 3_2:-1715031 | Msa0390650:CDS |
| AACAAACAAGGTTTCAAGAA+GGG | 0.554561 | 3_2:-1716620 | Msa0390650:CDS |
| TTCACAAACTCAATAACCAA+TGG | 0.554620 | 3_2:+1716557 | None:intergenic |
| TAAAGAATAGAACAAGTGAA+TGG | 0.555459 | 3_2:+1714877 | None:intergenic |
| GGAGTAACATTGAGAACTAT+CGG | 0.556951 | 3_2:+1716817 | None:intergenic |
| CTTACGAAAATCGTATGCAT+TGG | 0.559732 | 3_2:-1714998 | Msa0390650:CDS |
| ATGTCGTATGTTTGAGAACA+GGG | 0.560861 | 3_2:-1714442 | Msa0390650:CDS |
| CCATGATACTTTATTGCTAG+GGG | 0.563054 | 3_2:+1716796 | None:intergenic |
| GATCATGATCTTCAAAACTT+GGG | 0.567815 | 3_2:+1714520 | None:intergenic |
| GTCTTCAGTGCCAACATGGA+TGG | 0.576478 | 3_2:+1714275 | None:intergenic |
| GTTATGGGTCAAGGAGTTGG+AGG | 0.578191 | 3_2:-1716302 | Msa0390650:CDS |
| TCTAAAACATCAACATTGGA+AGG | 0.579248 | 3_2:+1714567 | None:intergenic |
| TTACTGATTCATGCTGAGAG+TGG | 0.579535 | 3_2:-1716875 | Msa0390650:CDS |
| TCTTATGAAGTTATGGGTCA+AGG | 0.580120 | 3_2:-1716311 | Msa0390650:CDS |
| ATCCTAACAGTCAGCTGATG+CGG | 0.594920 | 3_2:-1714767 | Msa0390650:CDS |
| TATGATGATGCTGATAATGA+CGG | 0.599988 | 3_2:-1714591 | Msa0390650:CDS |
| TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 3_2:+1714251 | None:intergenic |
| GACAACATCAGACAGTCCAT+TGG | 0.604607 | 3_2:-1716573 | Msa0390650:CDS |
| CTGAAATCGACCATCCATGT+TGG | 0.607729 | 3_2:-1714285 | Msa0390650:CDS |
| ATATCAACTTCATCTGAGAG+TGG | 0.614980 | 3_2:-1716920 | Msa0390650:CDS |
| ACGTGTTTGTGCAGATTCGG+AGG | 0.616020 | 3_2:-1714196 | Msa0390650:CDS |
| ATGATGATGCTGATAATGAC+GGG | 0.620534 | 3_2:-1714590 | Msa0390650:CDS |
| AGCCACCTAAAGTCTGAAGT+AGG | 0.632459 | 3_2:+1715029 | None:intergenic |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 3_2:-1714844 | Msa0390650:CDS |
| GATATTGCACATGACCACCT+AGG | 0.647490 | 3_2:+1714382 | None:intergenic |
| TGGTGTCTTCAGTGCCAACA+TGG | 0.650133 | 3_2:+1714271 | None:intergenic |
| GATTTCAGCTTATCGACAGA+CGG | 0.652942 | 3_2:+1714300 | None:intergenic |
| TGTCGTATGTTTGAGAACAG+GGG | 0.653807 | 3_2:-1714441 | Msa0390650:CDS |
| AAGATCTTGGAGTTCCTAGG+TGG | 0.662062 | 3_2:-1714396 | Msa0390650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAATAAGAAATTTGATA+AGG | - | chr3_2:1714241-1714260 | Msa0390650:CDS | 15.0% |
| !!! | ATGATGAAAAATTGTTTTAA+TGG | - | chr3_2:1715851-1715870 | Msa0390650:intron | 15.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | - | chr3_2:1714158-1714177 | Msa0390650:CDS | 20.0% |
| !!! | ATAAAACTGGATTTTCTATT+AGG | - | chr3_2:1714192-1714211 | Msa0390650:CDS | 20.0% |
| !! | ATGTGTATAAGATATATAGA+TGG | - | chr3_2:1714444-1714463 | Msa0390650:CDS | 20.0% |
| !! | TGTGTATAAGATATATAGAT+GGG | - | chr3_2:1714445-1714464 | Msa0390650:CDS | 20.0% |
| !! | AAAAATAAACACTAACCTAA+TGG | + | chr3_2:1714905-1714924 | None:intergenic | 20.0% |
| !!! | CATGTTGTAATTTTTTTTTC+TGG | - | chr3_2:1714975-1714994 | Msa0390650:CDS | 20.0% |
| !! | ACATACTTATTAGAATACTT+AGG | - | chr3_2:1715265-1715284 | Msa0390650:intron | 20.0% |
| !!! | AATCAGATTTTGACTATAAT+TGG | - | chr3_2:1715822-1715841 | Msa0390650:intron | 20.0% |
| !!! | ATCAGATTTTGACTATAATT+GGG | - | chr3_2:1715823-1715842 | Msa0390650:intron | 20.0% |
| !!! | TGAAAAATTGTTTTAATGGA+AGG | - | chr3_2:1715855-1715874 | Msa0390650:intron | 20.0% |
| !!! | CTAAGTTTTTACAATTGAAA+AGG | - | chr3_2:1716282-1716301 | Msa0390650:CDS | 20.0% |
| ! | GGTAATTATGCATATAAAAC+TGG | - | chr3_2:1714179-1714198 | Msa0390650:CDS | 25.0% |
| ! | TGGATATCATAGTAAAAAGA+TGG | + | chr3_2:1714758-1714777 | None:intergenic | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | - | chr3_2:1714792-1714811 | Msa0390650:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | - | chr3_2:1714793-1714812 | Msa0390650:CDS | 25.0% |
| ! | CAACTAGATTATTCTCTATT+CGG | - | chr3_2:1714830-1714849 | Msa0390650:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr3_2:1714879-1714898 | Msa0390650:CDS | 25.0% |
| !! | TTACTTTCATTAAGTTGTTC+TGG | - | chr3_2:1714952-1714971 | Msa0390650:CDS | 25.0% |
| ! | CAAACTTAAATGATGTTGAT+TGG | - | chr3_2:1715168-1715187 | Msa0390650:intron | 25.0% |
| !!! | ATTTATATTTTGAACTGCCT+AGG | - | chr3_2:1715192-1715211 | Msa0390650:intron | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | + | chr3_2:1715515-1715534 | None:intergenic | 25.0% |
| ! | TAAAGAATAGAACAAGTGAA+TGG | + | chr3_2:1716033-1716052 | None:intergenic | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr3_2:1716048-1716067 | Msa0390650:CDS | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr3_2:1716222-1716241 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr3_2:1716222-1716241 | Msa0390650:CDS | 25.0% |
| !!! | ATTATGTTTTTGCTTGATGT+TGG | + | chr3_2:1716787-1716806 | None:intergenic | 25.0% |
| TCCATGATACTTTATTGCTA+GGG | + | chr3_2:1714115-1714134 | None:intergenic | 30.0% | |
| TTCCATGATACTTTATTGCT+AGG | + | chr3_2:1714116-1714135 | None:intergenic | 30.0% | |
| CGTTATGTTTGTAACAAACA+AGG | - | chr3_2:1714275-1714294 | Msa0390650:CDS | 30.0% | |
| TAACAAACAAGGTTTCAAGA+AGG | - | chr3_2:1714286-1714305 | Msa0390650:CDS | 30.0% | |
| AACAAACAAGGTTTCAAGAA+GGG | - | chr3_2:1714287-1714306 | Msa0390650:CDS | 30.0% | |
| TTCACAAACTCAATAACCAA+TGG | + | chr3_2:1714353-1714372 | None:intergenic | 30.0% | |
| TGTGAAAGTGAAAGAAAAAC+CGG | - | chr3_2:1714367-1714386 | Msa0390650:CDS | 30.0% | |
| TTACTTCTCGAAATGATCTA+AGG | + | chr3_2:1714517-1714536 | None:intergenic | 30.0% | |
| !! | GCTCTTATAAATTCTAAAGC+TGG | - | chr3_2:1714557-1714576 | Msa0390650:CDS | 30.0% |
| AGAACGTCTTATGAAGTTAT+GGG | - | chr3_2:1714590-1714609 | Msa0390650:CDS | 30.0% | |
| TTTAAGTCTGAAAACCGAAA+AGG | + | chr3_2:1714644-1714663 | None:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr3_2:1714883-1714902 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr3_2:1714887-1714906 | Msa0390650:CDS | 30.0% | |
| AGTTCCTACTTGTTTGTTTA+GGG | - | chr3_2:1715069-1715088 | Msa0390650:CDS | 30.0% | |
| AAATCCCTAAACAAACAAGT+AGG | + | chr3_2:1715076-1715095 | None:intergenic | 30.0% | |
| TTGTCTAAGTAAAAATGCCT+AGG | + | chr3_2:1715212-1715231 | None:intergenic | 30.0% | |
| AGACTAGCAATGACTAATTA+AGG | - | chr3_2:1715348-1715367 | Msa0390650:intron | 30.0% | |
| GACTAGCAATGACTAATTAA+GGG | - | chr3_2:1715349-1715368 | Msa0390650:intron | 30.0% | |
| TAAATTTCAGCTGCCTTTAT+TGG | - | chr3_2:1715499-1715518 | Msa0390650:intron | 30.0% | |
| !!! | CATCGTAAGAGTGTTTTATT+TGG | - | chr3_2:1715532-1715551 | Msa0390650:intron | 30.0% |
| ! | TCAATTTCGAATAGTTTTCC+AGG | - | chr3_2:1715679-1715698 | Msa0390650:intron | 30.0% |
| ! | TTTTGACGAGGTAACTAATT+TGG | - | chr3_2:1715781-1715800 | Msa0390650:intron | 30.0% |
| ! | CATACGATTTTCGTAAGTTT+GGG | + | chr3_2:1715906-1715925 | None:intergenic | 30.0% |
| ! | TCTTTCAATGCTTTTCTTTG+TGG | - | chr3_2:1715992-1716011 | Msa0390650:intron | 30.0% |
| CTCCTCATAATAGTATTTGA+AGG | + | chr3_2:1716227-1716246 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr3_2:1716225-1716244 | Msa0390650:CDS | 30.0% | |
| ! | TATGATGATGCTGATAATGA+CGG | - | chr3_2:1716316-1716335 | Msa0390650:CDS | 30.0% |
| ! | TCTAAAACATCAACATTGGA+AGG | + | chr3_2:1716343-1716362 | None:intergenic | 30.0% |
| !! | TGCTTCTAAAACATCAACAT+TGG | + | chr3_2:1716347-1716366 | None:intergenic | 30.0% |
| GATCATGATCTTCAAAACTT+GGG | + | chr3_2:1716390-1716409 | None:intergenic | 30.0% | |
| !! | ATCATGATCGATTTGATGAA+AGG | - | chr3_2:1716401-1716420 | Msa0390650:CDS | 30.0% |
| !!! | CATTTTTTGAAGACAATACC+TGG | - | chr3_2:1716547-1716566 | Msa0390650:CDS | 30.0% |
| !!! | GACAATATGTTTTAAAGCGT+TGG | - | chr3_2:1716569-1716588 | Msa0390650:CDS | 30.0% |
| !!! | GCATCTGAATTTTTTCTACA+CGG | - | chr3_2:1716733-1716752 | Msa0390650:CDS | 30.0% |
| GAAGATTATATGAATGTGCT+AGG | + | chr3_2:1716879-1716898 | None:intergenic | 30.0% | |
| GTGATATCATTTCTGTAACT+TGG | - | chr3_2:1716917-1716936 | Msa0390650:CDS | 30.0% | |
| ATATCAACTTCATCTGAGAG+TGG | - | chr3_2:1713987-1714006 | Msa0390650:CDS | 35.0% | |
| GGAGTAACATTGAGAACTAT+CGG | + | chr3_2:1714093-1714112 | None:intergenic | 35.0% | |
| CCATGATACTTTATTGCTAG+GGG | + | chr3_2:1714114-1714133 | None:intergenic | 35.0% | |
| GTTTGCTTAATCCTAACAAC+AGG | - | chr3_2:1714312-1714331 | Msa0390650:CDS | 35.0% | |
| ! | GAATGCTCTGGTTTATGTAA+TGG | + | chr3_2:1714488-1714507 | None:intergenic | 35.0% |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr3_2:1714527-1714546 | Msa0390650:CDS | 35.0% | |
| GAGAACGTCTTATGAAGTTA+TGG | - | chr3_2:1714589-1714608 | Msa0390650:CDS | 35.0% | |
| TCTTATGAAGTTATGGGTCA+AGG | - | chr3_2:1714596-1714615 | Msa0390650:CDS | 35.0% | |
| GACAATTCGTCAAAAAGAGA+TGG | - | chr3_2:1714676-1714695 | Msa0390650:intron | 35.0% | |
| AATTCGTCAAAAAGAGATGG+TGG | - | chr3_2:1714679-1714698 | Msa0390650:intron | 35.0% | |
| !!! | GGCATGTTGTTTTTTTGTTC+TGG | - | chr3_2:1714996-1715015 | Msa0390650:CDS | 35.0% |
| CTGGCATGTGTATTATAAGT+AGG | - | chr3_2:1715015-1715034 | Msa0390650:CDS | 35.0% | |
| TAGGAACTGTAGTAAATCCT+AGG | + | chr3_2:1715057-1715076 | None:intergenic | 35.0% | |
| CAGTTCCTACTTGTTTGTTT+AGG | - | chr3_2:1715068-1715087 | Msa0390650:CDS | 35.0% | |
| ! | ATTTTCTTGCTTCTGCCATT+TGG | - | chr3_2:1715092-1715111 | Msa0390650:CDS | 35.0% |
| AAAAACCCCATGAAACCAAA+TGG | + | chr3_2:1715110-1715129 | None:intergenic | 35.0% | |
| !! | CATCTTTCAGGTTTGATATC+TGG | + | chr3_2:1715140-1715159 | None:intergenic | 35.0% |
| CAGATATCAAACCTGAAAGA+TGG | - | chr3_2:1715138-1715157 | Msa0390650:intron | 35.0% | |
| TTTGTCTCAAACCATCTTTC+AGG | + | chr3_2:1715152-1715171 | None:intergenic | 35.0% | |
| AGCAATGACTAATTAAGGGT+TGG | - | chr3_2:1715353-1715372 | Msa0390650:intron | 35.0% | |
| TGACTAATTAAGGGTTGGAT+TGG | - | chr3_2:1715358-1715377 | Msa0390650:intron | 35.0% | |
| !!! | AGATAGCAGCTACTTTTGAT+TGG | - | chr3_2:1715575-1715594 | Msa0390650:intron | 35.0% |
| AATCGTCTGTGGTTTCTTAT+TGG | + | chr3_2:1715629-1715648 | None:intergenic | 35.0% | |
| ! | AGTTTTCCAGGTGTTTTTCA+TGG | - | chr3_2:1715691-1715710 | Msa0390650:intron | 35.0% |
| ! | GTTTTCCAGGTGTTTTTCAT+GGG | - | chr3_2:1715692-1715711 | Msa0390650:intron | 35.0% |
| !!! | TTTTTCATGGGCTTTGTTCA+TGG | - | chr3_2:1715704-1715723 | Msa0390650:intron | 35.0% |
| GAGAATGCAAAGAAAAAGCT+TGG | - | chr3_2:1715736-1715755 | Msa0390650:intron | 35.0% | |
| !!! | AACAGTGCATTTTTTTGACG+AGG | - | chr3_2:1715769-1715788 | Msa0390650:intron | 35.0% |
| ! | GCATACGATTTTCGTAAGTT+TGG | + | chr3_2:1715907-1715926 | None:intergenic | 35.0% |
| CTTACGAAAATCGTATGCAT+TGG | - | chr3_2:1715909-1715928 | Msa0390650:intron | 35.0% | |
| ACATTATGGTTCAGAGAATG+AGG | - | chr3_2:1716062-1716081 | Msa0390650:CDS | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr3_2:1716063-1716082 | Msa0390650:CDS | 35.0% | |
| TGAATAAATGCAAAGCAAGC+TGG | + | chr3_2:1716187-1716206 | None:intergenic | 35.0% | |
| CTTGCTTTGCATTTATTCAC+AGG | - | chr3_2:1716188-1716207 | Msa0390650:CDS | 35.0% | |
| ! | ATGATGATGCTGATAATGAC+GGG | - | chr3_2:1716317-1716336 | Msa0390650:CDS | 35.0% |
| CGATCATGATCTTCAAAACT+TGG | + | chr3_2:1716391-1716410 | None:intergenic | 35.0% | |
| ATGTCGTATGTTTGAGAACA+GGG | - | chr3_2:1716465-1716484 | Msa0390650:CDS | 35.0% | |
| !!! | TCGACATGTTTTGAAGATCT+TGG | - | chr3_2:1716498-1716517 | Msa0390650:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTCC+AGG | + | chr3_2:1716568-1716587 | None:intergenic | 35.0% |
| !!! | TTTCTGTAACTTGGTGCTTT+TGG | - | chr3_2:1716926-1716945 | Msa0390650:CDS | 35.0% |
| !! | TTACTGATTCATGCTGAGAG+TGG | - | chr3_2:1714032-1714051 | Msa0390650:CDS | 40.0% |
| ! | CCCCTAGCAATAAAGTATCA+TGG | - | chr3_2:1714111-1714130 | Msa0390650:CDS | 40.0% |
| TCTGATGTTGTCCTGTTGTT+AGG | + | chr3_2:1714326-1714345 | None:intergenic | 40.0% | |
| GAAAGTGAAAGAAAAACCGG+AGG | - | chr3_2:1714370-1714389 | Msa0390650:CDS | 40.0% | |
| TGAAAGAAAAACCGGAGGAA+AGG | - | chr3_2:1714375-1714394 | Msa0390650:CDS | 40.0% | |
| GAAAGAAAAACCGGAGGAAA+GGG | - | chr3_2:1714376-1714395 | Msa0390650:CDS | 40.0% | |
| !! | AGCTGGAATATCTTTGAAGC+TGG | - | chr3_2:1714409-1714428 | Msa0390650:CDS | 40.0% |
| CTAAGGTAACATGAATGCTC+TGG | + | chr3_2:1714500-1714519 | None:intergenic | 40.0% | |
| ! | GCACGAAGAATCTTCCTTTT+CGG | - | chr3_2:1714627-1714646 | Msa0390650:intron | 40.0% |
| TGTCTTCTGTAGCATCAACT+TGG | + | chr3_2:1714778-1714797 | None:intergenic | 40.0% | |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | - | chr3_2:1714800-1714819 | Msa0390650:CDS | 40.0% |
| ! | GAGTACATTTTGAACTGCCT+AGG | - | chr3_2:1715037-1715056 | Msa0390650:CDS | 40.0% |
| ! | CTTCTGCCATTTGGTTTCAT+GGG | - | chr3_2:1715101-1715120 | Msa0390650:intron | 40.0% |
| ! | TTCTGCCATTTGGTTTCATG+GGG | - | chr3_2:1715102-1715121 | Msa0390650:intron | 40.0% |
| CGATCACACAAGACAATTTC+AGG | + | chr3_2:1715236-1715255 | None:intergenic | 40.0% | |
| ATTGAGTTTACGCATTGCTG+AGG | - | chr3_2:1715299-1715318 | Msa0390650:intron | 40.0% | |
| TGGTCTGTATAAATCGTCTG+TGG | + | chr3_2:1715640-1715659 | None:intergenic | 40.0% | |
| ACAGACGATTTATACAGACC+AGG | - | chr3_2:1715639-1715658 | Msa0390650:intron | 40.0% | |
| !! | TATGCATTGGTCTTCAGCTT+GGG | - | chr3_2:1715922-1715941 | Msa0390650:intron | 40.0% |
| ! | GTCAAGTCACATTTTACAGC+TGG | - | chr3_2:1715944-1715963 | Msa0390650:intron | 40.0% |
| GAGGGATAATCATGCTGAAT+TGG | - | chr3_2:1716081-1716100 | Msa0390650:CDS | 40.0% | |
| TCATGCTGAATTGGACTTCA+AGG | - | chr3_2:1716090-1716109 | Msa0390650:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+AGG | - | chr3_2:1716464-1716483 | Msa0390650:CDS | 40.0% | |
| TGTCGTATGTTTGAGAACAG+GGG | - | chr3_2:1716466-1716485 | Msa0390650:CDS | 40.0% | |
| TTGAAGATCTTGGAGTTCCT+AGG | - | chr3_2:1716508-1716527 | Msa0390650:CDS | 40.0% | |
| GATTTCAGCTTATCGACAGA+CGG | + | chr3_2:1716610-1716629 | None:intergenic | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | + | chr3_2:1716659-1716678 | None:intergenic | 40.0% | |
| TACACGTGTTTGTGCAGATT+CGG | - | chr3_2:1716708-1716727 | Msa0390650:CDS | 40.0% | |
| GACAACATCAGACAGTCCAT+TGG | - | chr3_2:1714334-1714353 | Msa0390650:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+CGG | + | chr3_2:1714389-1714408 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr3_2:1714392-1714411 | Msa0390650:CDS | 45.0% |
| GAAGTTATGGGTCAAGGAGT+TGG | - | chr3_2:1714602-1714621 | Msa0390650:CDS | 45.0% | |
| ! | CGTCAAAAAGAGATGGTGGT+TGG | - | chr3_2:1714683-1714702 | Msa0390650:intron | 45.0% |
| ! | GCTTCTGCCATTTGGTTTCA+TGG | - | chr3_2:1715100-1715119 | Msa0390650:intron | 45.0% |
| AACACAATAACGCACTAGCC+TGG | + | chr3_2:1715660-1715679 | None:intergenic | 45.0% | |
| CAAAGCCCATGAAAAACACC+TGG | + | chr3_2:1715700-1715719 | None:intergenic | 45.0% | |
| GAAGGCCTACTTCAGACTTT+AGG | - | chr3_2:1715873-1715892 | Msa0390650:intron | 45.0% | |
| ! | AGCCACCTAAAGTCTGAAGT+AGG | + | chr3_2:1715881-1715900 | None:intergenic | 45.0% |
| !! | GTATGCATTGGTCTTCAGCT+TGG | - | chr3_2:1715921-1715940 | Msa0390650:intron | 45.0% |
| ATCCTAACAGTCAGCTGATG+CGG | - | chr3_2:1716140-1716159 | Msa0390650:CDS | 45.0% | |
| TATGAGGAGGACACGACAAA+AGG | - | chr3_2:1716238-1716257 | Msa0390650:CDS | 45.0% | |
| ATGAGGAGGACACGACAAAA+GGG | - | chr3_2:1716239-1716258 | Msa0390650:CDS | 45.0% | |
| AAGATCTTGGAGTTCCTAGG+TGG | - | chr3_2:1716511-1716530 | Msa0390650:CDS | 45.0% | |
| GATATTGCACATGACCACCT+AGG | + | chr3_2:1716528-1716547 | None:intergenic | 45.0% | |
| CTGAAATCGACCATCCATGT+TGG | - | chr3_2:1716622-1716641 | Msa0390650:CDS | 45.0% | |
| TACACGGTGTTCTTGAAGCT+GGG | - | chr3_2:1716749-1716768 | Msa0390650:CDS | 45.0% | |
| GAAAAACCGGAGGAAAGGGT+TGG | - | chr3_2:1714380-1714399 | Msa0390650:CDS | 50.0% | |
| GTTATGGGTCAAGGAGTTGG+AGG | - | chr3_2:1714605-1714624 | Msa0390650:CDS | 50.0% | |
| !! | TGGGCTTTGTTCATGGCACA+TGG | - | chr3_2:1715711-1715730 | Msa0390650:intron | 50.0% |
| GGCCTACTTCAGACTTTAGG+TGG | - | chr3_2:1715876-1715895 | Msa0390650:intron | 50.0% | |
| AACCGCATCAGCTGACTGTT+AGG | + | chr3_2:1716145-1716164 | None:intergenic | 50.0% | |
| GTCTTCAGTGCCAACATGGA+TGG | + | chr3_2:1716635-1716654 | None:intergenic | 50.0% | |
| TGGTGTCTTCAGTGCCAACA+TGG | + | chr3_2:1716639-1716658 | None:intergenic | 50.0% | |
| ACGTGTTTGTGCAGATTCGG+AGG | - | chr3_2:1716711-1716730 | Msa0390650:CDS | 50.0% | |
| CTACACGGTGTTCTTGAAGC+TGG | - | chr3_2:1716748-1716767 | Msa0390650:CDS | 50.0% | |
| CACGACAAAAGGGTCTGCGT+TGG | - | chr3_2:1716249-1716268 | Msa0390650:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 1713978 | 1716951 | 1713978 | ID=Msa0390650;Name=Msa0390650 |
| chr3_2 | mRNA | 1713978 | 1716951 | 1713978 | ID=Msa0390650-mRNA-1;Parent=Msa0390650;Name=Msa0390650-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|3|0|643 |
| chr3_2 | exon | 1716021 | 1716951 | 1716021 | ID=Msa0390650-mRNA-1:exon:530;Parent=Msa0390650-mRNA-1 |
| chr3_2 | exon | 1714761 | 1715113 | 1714761 | ID=Msa0390650-mRNA-1:exon:529;Parent=Msa0390650-mRNA-1 |
| chr3_2 | exon | 1713978 | 1714625 | 1713978 | ID=Msa0390650-mRNA-1:exon:528;Parent=Msa0390650-mRNA-1 |
| chr3_2 | CDS | 1716021 | 1716951 | 1716021 | ID=Msa0390650-mRNA-1:cds;Parent=Msa0390650-mRNA-1 |
| chr3_2 | CDS | 1714761 | 1715113 | 1714761 | ID=Msa0390650-mRNA-1:cds;Parent=Msa0390650-mRNA-1 |
| chr3_2 | CDS | 1713978 | 1714625 | 1713978 | ID=Msa0390650-mRNA-1:cds;Parent=Msa0390650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
