AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0391020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0391020 MtrunA17_Chr5g0422941 88.608 237 27 0 1 237 1 237 4.65e-159 440
Msa0391020 MtrunA17_Chr2g0317451 80.932 236 45 0 1 236 1 236 3.75e-143 399
Msa0391020 MtrunA17_Chr2g0317481 80.932 236 45 0 1 236 1 236 1.38e-142 398
Msa0391020 MtrunA17_Chr5g0419601 76.793 237 55 0 1 237 1 237 1.27e-125 355
Msa0391020 MtrunA17_Chr5g0422421 74.667 225 57 0 1 225 1 225 5.97e-122 346
Msa0391020 MtrunA17_Chr1g0187361 69.333 225 69 0 1 225 1 225 3.82e-112 321
Msa0391020 MtrunA17_Chr8g0355091 64.135 237 85 0 1 237 1 237 7.06e-112 320
Msa0391020 MtrunA17_Chr1g0188671 69.333 225 69 0 1 225 39 263 2.38e-111 320
Msa0391020 MtrunA17_Chr1g0206721 66.968 221 73 0 1 221 1 221 3.68e-108 311
Msa0391020 MtrunA17_Chr1g0149391 65.823 237 81 0 1 237 1 237 1.76e-105 304
Msa0391020 MtrunA17_Chr1g0206701 62.667 225 84 0 1 225 1 225 1.96e-104 301
Msa0391020 MtrunA17_Chr2g0292791 64.135 237 85 0 1 237 1 237 1.50e-103 299
Msa0391020 MtrunA17_Chr3g0099421 63.801 221 80 0 1 221 26 246 5.91e-100 291
Msa0391020 MtrunA17_Chr1g0206691 61.818 220 84 0 18 237 1 220 2.21e-98 286
Msa0391020 MtrunA17_Chr2g0300441 58.228 237 98 1 1 237 1 236 1.57e-96 281
Msa0391020 MtrunA17_Chr3g0089141 60.426 235 75 3 1 225 1 227 2.61e-95 278
Msa0391020 MtrunA17_Chr1g0208561 60.000 235 76 3 1 225 1 227 4.60e-93 272
Msa0391020 MtrunA17_Chr2g0325971 59.149 235 78 3 1 225 1 227 3.70e-90 265
Msa0391020 MtrunA17_Chr3g0099411 59.361 219 70 2 1 219 1 200 1.45e-86 256
Msa0391020 MtrunA17_Chr1g0208581 54.812 239 91 3 1 237 1 224 1.13e-85 254
Msa0391020 MtrunA17_Chr1g0206991 62.637 182 68 0 1 182 1 182 7.04e-81 240
Msa0391020 MtrunA17_Chr7g0238991 51.695 236 112 2 3 237 14 248 1.53e-80 241
Msa0391020 MtrunA17_Chr3g0119901 44.670 197 105 1 1 193 1 197 3.76e-51 165
Msa0391020 MtrunA17_Chr3g0085241 44.974 189 94 1 3 191 35 213 3.55e-50 164
Msa0391020 MtrunA17_Chr3g0111931 72.549 102 28 0 21 122 2 103 9.83e-48 153
Msa0391020 MtrunA17_Chr3g0089151 60.163 123 49 0 1 123 1 123 1.42e-47 153
Msa0391020 MtrunA17_Chr2g0300421 61.719 128 49 0 1 128 1 128 3.10e-47 154
Msa0391020 MtrunA17_Chr1g0187351 80.597 67 12 1 18 83 1 67 3.16e-33 115
Msa0391020 MtrunA17_Chr3g0111841 88.136 59 7 0 15 73 2 60 1.62e-31 110
Msa0391020 MtrunA17_Chr8g0379021 35.542 166 97 2 5 167 8 166 1.40e-27 103
Msa0391020 MtrunA17_Chr2g0333981 32.184 174 106 2 5 174 8 173 3.99e-27 102
Msa0391020 MtrunA17_Chr4g0018951 38.312 154 83 2 5 158 8 149 4.12e-27 102
Msa0391020 MtrunA17_Chr3g0111831 73.770 61 16 0 16 76 11 71 1.39e-25 95.9
Msa0391020 MtrunA17_Chr1g0169761 49.351 77 39 0 9 85 2 78 1.82e-22 90.5
Msa0391020 MtrunA17_Chr8g0376821 52.113 71 34 0 9 79 2 72 4.21e-22 89.7
Msa0391020 MtrunA17_Chr4g0074101 36.196 163 92 5 9 161 2 162 4.43e-22 90.1
Msa0391020 MtrunA17_Chr8g0357771 50.633 79 39 0 9 87 2 80 1.07e-21 88.6
Msa0391020 MtrunA17_Chr8g0356071 53.247 77 36 0 9 85 2 78 1.52e-21 87.8
Msa0391020 MtrunA17_Chr1g0175601 46.667 75 40 0 9 83 2 76 1.28e-20 85.9
Msa0391020 MtrunA17_Chr1g0175611 45.570 79 43 0 9 87 2 80 2.41e-20 84.7
Msa0391020 MtrunA17_Chr1g0180591 38.095 105 63 1 9 111 2 106 8.38e-20 83.6
Msa0391020 MtrunA17_Chr4g0071601 34.831 178 108 3 5 175 8 184 2.58e-19 82.4
Msa0391020 MtrunA17_Chr4g0049901 45.000 100 46 2 10 101 29 127 2.14e-18 81.3
Msa0391020 MtrunA17_Chr4g0052061 52.174 69 33 0 9 77 2 70 3.92e-18 78.6
Msa0391020 MtrunA17_Chr3g0077501 50.000 68 34 0 9 76 2 69 2.11e-17 78.2
Msa0391020 MtrunA17_Chr4g0052081 50.725 69 34 0 9 77 2 70 4.18e-17 76.3
Msa0391020 MtrunA17_Chr3g0097101 43.750 80 45 0 3 82 11 90 8.51e-17 77.0
Msa0391020 MtrunA17_Chr4g0057151 48.611 72 37 0 10 81 3 74 1.02e-16 75.9
Msa0391020 MtrunA17_Chr8g0351051 49.367 79 38 1 9 85 2 80 1.80e-16 76.3
Msa0391020 MtrunA17_Chr4g0061691 50.725 69 33 1 9 76 2 70 2.44e-16 75.5
Msa0391020 MtrunA17_Chr6g0474371 50.725 69 33 1 9 76 2 70 4.92e-16 73.9
Msa0391020 MtrunA17_Chr7g0246431 46.914 81 39 1 10 86 3 83 7.08e-16 73.9
Msa0391020 MtrunA17_Chr8g0351041 45.333 75 41 0 10 84 3 77 7.35e-16 72.8
Msa0391020 MtrunA17_Chr5g0427401 48.529 68 35 0 9 76 2 69 7.62e-16 73.9
Msa0391020 MtrunA17_Chr2g0279821 42.105 76 44 0 9 84 2 77 1.39e-15 73.6
Msa0391020 MtrunA17_Chr8g0380021 48.529 68 35 0 9 76 18 85 1.52e-15 73.6
Msa0391020 MtrunA17_Chr1g0204111 51.471 68 33 0 9 76 18 85 2.01e-15 73.2
Msa0391020 MtrunA17_Chr4g0020221 51.471 68 33 0 9 76 2 69 2.14e-15 73.2
Msa0391020 MtrunA17_Chr7g0246381 54.545 66 25 1 9 69 2 67 2.30e-15 68.6
Msa0391020 MtrunA17_Chr4g0049541 38.202 89 44 1 9 97 2 79 2.52e-15 72.4
Msa0391020 MtrunA17_Chr8g0351031 45.333 75 41 0 10 84 3 77 2.95e-15 72.4
Msa0391020 MtrunA17_Chr2g0284911 48.529 68 35 0 9 76 17 84 3.20e-15 72.8
Msa0391020 MtrunA17_Chr5g0412271 50.746 67 33 0 9 75 2 68 4.95e-15 71.6
Msa0391020 MtrunA17_Chr5g0412461 50.746 67 33 0 9 75 2 68 6.21e-15 71.6
Msa0391020 MtrunA17_Chr8g0366231 46.377 69 36 1 9 76 2 70 9.25e-15 71.2
Msa0391020 MtrunA17_Chr3g0093131 32.168 143 78 5 26 158 36 169 9.39e-15 70.5
Msa0391020 MtrunA17_Chr5g0404951 50.000 70 33 1 9 76 2 71 9.47e-15 71.2
Msa0391020 MtrunA17_Chr8g0345001 30.994 171 91 5 2 158 9 166 1.03e-14 70.1
Msa0391020 MtrunA17_Chr7g0220111 49.275 69 34 1 9 76 2 70 1.04e-14 71.2
Msa0391020 MtrunA17_Chr6g0455511 49.275 69 34 1 9 76 2 70 1.18e-14 71.2
Msa0391020 MtrunA17_Chr5g0420081 48.529 68 34 1 9 75 2 69 1.37e-14 70.9
Msa0391020 MtrunA17_Chr7g0220121 44.444 72 39 1 9 79 2 73 1.48e-14 70.9
Msa0391020 MtrunA17_Chr1g0173161 58.929 56 23 0 9 64 2 57 1.55e-14 67.0
Msa0391020 MtrunA17_Chr5g0411691 44.118 68 38 0 9 76 2 69 2.78e-14 70.1
Msa0391020 MtrunA17_Chr1g0159661 48.485 66 33 1 9 74 2 66 4.14e-14 68.2
Msa0391020 MtrunA17_Chr3g0134451 47.887 71 36 1 9 78 2 72 5.21e-14 70.1
Msa0391020 MtrunA17_Chr1g0164791 45.238 84 40 2 9 86 2 85 5.47e-14 68.9
Msa0391020 MtrunA17_Chr5g0427921 49.123 57 29 0 9 65 2 58 6.18e-14 64.7
Msa0391020 MtrunA17_Chr4g0061671 52.632 57 27 0 9 65 2 58 7.23e-14 67.8
Msa0391020 MtrunA17_Chr5g0420091 55.357 56 25 0 9 64 2 57 7.73e-14 68.2
Msa0391020 MtrunA17_Chr2g0308251 47.887 71 36 1 9 78 2 72 9.13e-14 65.1
Msa0391020 MtrunA17_Chr8g0377561 55.357 56 25 0 9 64 2 57 1.03e-13 65.1
Msa0391020 MtrunA17_Chr5g0425191 57.407 54 23 0 8 61 1 54 1.28e-13 65.1
Msa0391020 MtrunA17_Chr3g0125241 44.286 70 37 1 9 76 27 96 1.36e-13 67.4
Msa0391020 MtrunA17_Chr3g0142191 47.619 63 33 0 9 71 2 64 2.22e-13 67.4
Msa0391020 MtrunA17_Chr4g0044071 54.386 57 26 0 9 65 2 58 2.63e-13 64.3
Msa0391020 MtrunA17_Chr3g0122251 53.571 56 26 0 9 64 2 57 3.60e-13 67.0
Msa0391020 MtrunA17_Chr4g0025531 38.202 89 55 0 1 89 1 89 1.07e-11 62.8
Msa0391020 MtrunA17_Chr4g0060841 42.857 77 42 1 9 83 2 78 5.62e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0391020 AT5G60440.1 49.735 189 88 3 5 190 3 187 4.10e-53 173
Msa0391020 AT1G65360.1 43.684 190 98 4 5 192 3 185 9.70e-42 142
Msa0391020 AT1G01530.1 40.526 190 105 3 4 192 2 184 1.90e-37 131
Msa0391020 AT2G24840.1 46.835 158 79 2 9 163 63 218 7.05e-37 130
Msa0391020 AT4G36590.1 37.131 237 124 8 5 226 3 229 1.51e-35 127
Msa0391020 AT3G04100.1 27.041 196 139 2 2 193 7 202 1.12e-24 97.4
Msa0391020 AT2G34440.1 53.521 71 33 0 9 79 2 72 3.53e-22 90.1
Msa0391020 AT3G66656.1 58.824 68 28 0 9 76 2 69 8.43e-22 89.4
Msa0391020 AT1G72350.1 34.940 166 70 5 9 169 43 175 2.66e-21 89.0
Msa0391020 AT4G37940.4 32.370 173 86 5 9 154 2 170 1.28e-18 81.6
Msa0391020 AT2G22630.1 32.787 183 86 6 9 154 2 184 1.41e-18 81.6
Msa0391020 AT2G22630.2 32.787 183 86 6 9 154 2 184 1.41e-18 81.6
Msa0391020 AT1G28460.1 30.857 175 107 5 5 170 4 173 2.60e-18 80.1
Msa0391020 AT2G45660.2 52.941 68 32 0 10 77 3 70 6.20e-18 78.6
Msa0391020 AT2G45650.1 54.412 68 31 0 9 76 2 69 7.77e-18 80.1
Msa0391020 AT5G51870.5 52.778 72 34 0 5 76 21 92 1.02e-17 78.6
Msa0391020 AT4G37940.1 31.694 183 88 6 9 154 2 184 1.14e-17 79.3
Msa0391020 AT2G45660.1 52.941 68 32 0 10 77 3 70 1.58e-17 78.6
Msa0391020 AT4G22950.2 47.222 72 38 0 10 81 3 74 4.30e-17 76.6
Msa0391020 AT5G51870.2 53.731 67 31 0 10 76 3 69 6.25e-17 76.3
Msa0391020 AT5G51870.1 53.731 67 31 0 10 76 3 69 6.84e-17 76.6
Msa0391020 AT1G29962.1 28.144 167 106 4 5 157 4 170 7.17e-17 76.3
Msa0391020 AT4G09960.2 48.529 68 35 0 9 76 2 69 7.19e-17 77.0
Msa0391020 AT4G09960.6 48.529 68 35 0 9 76 3 70 8.21e-17 77.0
Msa0391020 AT4G09960.1 48.529 68 35 0 9 76 2 69 8.33e-17 77.0
Msa0391020 AT5G23260.4 35.570 149 68 4 5 125 14 162 9.94e-17 77.4
Msa0391020 AT4G09960.5 48.529 68 35 0 9 76 12 79 1.03e-16 77.0
Msa0391020 AT5G51870.3 52.857 70 33 0 7 76 10 79 1.05e-16 76.6
Msa0391020 AT4G22950.3 47.887 71 37 0 10 80 3 73 1.19e-16 76.3
Msa0391020 AT4G22950.1 47.887 71 37 0 10 80 3 73 1.19e-16 76.3
Msa0391020 AT5G51870.4 53.731 67 31 0 10 76 3 69 1.39e-16 76.3
Msa0391020 AT4G09960.3 48.529 68 35 0 9 76 28 95 1.55e-16 76.6
Msa0391020 AT5G10140.1 29.688 192 121 3 9 199 2 180 1.85e-16 75.5
Msa0391020 AT5G10140.2 49.275 69 34 1 9 76 2 70 2.01e-16 74.7
Msa0391020 AT5G10140.4 45.783 83 41 2 9 90 2 81 2.40e-16 74.7
Msa0391020 AT3G57390.3 52.941 68 32 0 9 76 2 69 2.61e-16 75.5
Msa0391020 AT5G23260.1 45.652 92 44 2 5 90 14 105 2.73e-16 76.3
Msa0391020 AT5G62165.14 50.746 67 33 0 10 76 3 69 2.98e-16 72.4
Msa0391020 AT5G62165.17 50.746 67 33 0 10 76 3 69 3.00e-16 73.9
Msa0391020 AT5G62165.12 50.746 67 33 0 10 76 3 69 3.00e-16 73.9
Msa0391020 AT5G62165.11 50.746 67 33 0 10 76 3 69 3.00e-16 73.9
Msa0391020 AT5G62165.6 50.746 67 33 0 10 76 3 69 3.04e-16 73.9
Msa0391020 AT5G62165.9 50.746 67 33 0 10 76 3 69 3.04e-16 73.9
Msa0391020 AT5G62165.7 50.746 67 33 0 10 76 3 69 3.04e-16 73.9
Msa0391020 AT5G62165.8 50.746 67 33 0 10 76 3 69 3.04e-16 73.9
Msa0391020 AT5G62165.13 50.746 67 33 0 10 76 3 69 3.04e-16 73.9
Msa0391020 AT5G23260.2 35.333 150 69 4 9 130 2 151 3.35e-16 75.9
Msa0391020 AT4G09960.4 48.529 68 35 0 9 76 97 164 3.67e-16 76.6
Msa0391020 AT3G30260.1 30.137 146 72 4 9 124 2 147 3.81e-16 75.5
Msa0391020 AT5G10140.3 49.275 69 34 1 9 76 2 70 4.14e-16 74.3
Msa0391020 AT3G57230.2 45.588 68 37 0 9 76 2 69 4.44e-16 73.2
Msa0391020 AT3G57390.1 52.941 68 32 0 9 76 2 69 6.17e-16 75.1
Msa0391020 AT2G22540.3 50.746 67 33 0 9 75 2 68 6.86e-16 74.7
Msa0391020 AT2G22540.1 50.746 67 33 0 9 75 2 68 6.86e-16 74.7
Msa0391020 AT5G62165.10 50.746 67 33 0 10 76 3 69 8.04e-16 73.6
Msa0391020 AT5G62165.4 50.746 67 33 0 10 76 3 69 8.04e-16 73.6
Msa0391020 AT3G57230.1 45.588 68 37 0 9 76 2 69 9.01e-16 74.3
Msa0391020 AT3G57230.4 45.588 68 37 0 9 76 2 69 9.01e-16 74.3
Msa0391020 AT5G62165.3 50.746 67 33 0 10 76 3 69 9.35e-16 73.9
Msa0391020 AT5G62165.1 50.746 67 33 0 10 76 3 69 9.35e-16 73.9
Msa0391020 AT5G62165.2 50.746 67 33 0 10 76 3 69 9.35e-16 73.9
Msa0391020 AT1G22130.1 39.394 99 59 1 9 106 2 100 9.67e-16 75.5
Msa0391020 AT5G23260.3 46.591 88 41 2 9 90 2 89 1.10e-15 73.9
Msa0391020 AT4G18960.1 46.667 75 40 0 2 76 11 85 1.26e-15 74.3
Msa0391020 AT2G42830.1 44.737 76 42 0 1 76 9 84 1.71e-15 73.6
Msa0391020 AT2G42830.2 44.737 76 42 0 1 76 9 84 1.73e-15 73.9
Msa0391020 AT3G61120.1 51.471 68 33 0 9 76 2 69 1.88e-15 73.6
Msa0391020 AT3G58780.1 47.887 71 37 0 6 76 14 84 1.99e-15 73.6
Msa0391020 AT4G37940.3 47.059 68 36 0 9 76 2 69 2.12e-15 72.0
Msa0391020 AT4G24540.1 51.471 68 33 0 9 76 2 69 2.26e-15 72.8
Msa0391020 AT3G54340.1 47.143 70 35 1 9 76 2 71 2.53e-15 73.2
Msa0391020 AT3G58780.5 47.887 71 37 0 6 76 20 90 2.61e-15 73.6
Msa0391020 AT5G51860.2 50.746 67 33 0 10 76 3 69 2.65e-15 72.4
Msa0391020 AT5G13790.2 48.529 68 35 0 9 76 2 69 3.15e-15 73.6
Msa0391020 AT5G13790.1 48.529 68 35 0 9 76 2 69 3.47e-15 73.2
Msa0391020 AT5G51860.1 50.746 67 33 0 10 76 3 69 3.54e-15 72.4
Msa0391020 AT3G58780.4 45.333 75 41 0 2 76 10 84 4.39e-15 73.2
Msa0391020 AT1G77980.1 40.449 89 52 1 9 96 2 90 4.52e-15 73.6
Msa0391020 AT5G60910.1 47.826 69 35 1 9 76 2 70 7.79e-15 72.0
Msa0391020 AT5G65050.2 47.826 69 35 1 9 76 2 70 1.35e-14 70.1
Msa0391020 AT1G69120.2 44.928 69 37 1 9 76 2 70 1.92e-14 70.5
Msa0391020 AT4G11880.2 47.222 72 37 1 10 80 3 74 2.02e-14 69.3
Msa0391020 AT4G11880.3 47.222 72 37 1 10 80 3 74 2.02e-14 69.3
Msa0391020 AT1G26310.1 44.928 69 37 1 9 76 2 70 2.14e-14 70.9
Msa0391020 AT1G77950.3 43.421 76 41 2 9 83 2 76 2.42e-14 70.5
Msa0391020 AT1G77950.2 43.421 76 41 2 9 83 2 76 2.42e-14 70.5
Msa0391020 AT1G77950.1 43.421 76 41 2 9 83 2 76 2.42e-14 70.5
Msa0391020 AT1G77950.4 43.421 76 41 2 9 83 2 76 2.42e-14 70.5
Msa0391020 AT5G20240.2 45.714 70 36 1 9 76 2 71 2.72e-14 68.6
Msa0391020 AT1G47760.1 32.174 115 68 2 9 115 2 114 2.83e-14 69.3
Msa0391020 AT2G14210.1 47.826 69 35 1 9 76 2 70 3.02e-14 70.1
Msa0391020 AT1G28450.1 28.977 176 111 6 5 168 4 177 3.23e-14 68.9
Msa0391020 AT4G11880.4 47.222 72 37 1 10 80 3 74 3.38e-14 69.7
Msa0391020 AT4G11880.1 47.222 72 37 1 10 80 3 74 3.38e-14 69.7
Msa0391020 AT5G15800.1 49.275 69 34 1 9 76 2 70 3.45e-14 70.1
Msa0391020 AT5G65050.3 47.826 69 35 1 9 76 2 70 3.59e-14 69.3
Msa0391020 AT5G65050.1 47.826 69 35 1 9 76 2 70 3.67e-14 68.9
Msa0391020 AT5G65050.5 47.826 69 35 1 9 76 2 70 3.80e-14 68.9
Msa0391020 AT5G20240.1 45.714 70 36 1 9 76 2 71 3.81e-14 69.3
Msa0391020 AT2G03710.1 41.000 100 51 3 9 100 2 101 3.91e-14 70.1
Msa0391020 AT2G14210.2 47.826 69 35 1 9 76 2 70 3.94e-14 69.7
Msa0391020 AT2G03710.3 41.000 100 51 3 9 100 2 101 4.11e-14 68.9
Msa0391020 AT2G03710.2 41.000 100 51 3 9 100 2 101 4.19e-14 70.1
Msa0391020 AT1G69120.1 44.928 69 37 1 9 76 2 70 4.22e-14 70.1
Msa0391020 AT5G15800.2 49.275 69 34 1 9 76 2 70 6.28e-14 69.7
Msa0391020 AT2G22540.2 57.143 56 24 0 9 64 2 57 8.35e-14 68.9
Msa0391020 AT3G58780.2 51.667 60 29 0 6 65 14 73 1.66e-13 68.2
Msa0391020 AT3G58780.3 48.438 64 33 0 2 65 10 73 2.15e-13 68.2
Msa0391020 AT1G17310.1 50.000 76 36 1 8 83 47 120 2.46e-13 67.4
Msa0391020 AT5G65060.3 46.377 69 36 1 9 76 2 70 2.48e-13 66.6
Msa0391020 AT5G65060.1 46.377 69 36 1 9 76 2 70 2.59e-13 67.0
Msa0391020 AT5G65060.2 46.377 69 36 1 9 76 2 70 2.65e-13 66.6
Msa0391020 AT1G24260.1 55.357 56 25 0 9 64 2 57 2.87e-13 67.8
Msa0391020 AT1G24260.3 55.357 56 25 0 9 64 2 57 2.96e-13 67.4
Msa0391020 AT1G24260.2 55.357 56 25 0 9 64 2 57 2.96e-13 67.8
Msa0391020 AT1G17310.2 50.000 76 36 1 8 83 58 131 3.44e-13 67.0
Msa0391020 AT5G65070.4 40.964 83 45 2 9 90 2 81 4.00e-13 65.1
Msa0391020 AT5G65070.1 30.573 157 78 6 9 138 2 154 4.23e-13 66.2
Msa0391020 AT1G71692.1 45.714 70 37 1 9 77 2 71 4.78e-13 66.2
Msa0391020 AT3G02310.2 44.928 69 37 1 9 76 2 70 7.07e-13 65.9
Msa0391020 AT5G65080.3 41.379 87 47 2 1 86 1 84 9.05e-13 65.1
Msa0391020 AT3G02310.1 44.928 69 37 1 9 76 2 70 9.89e-13 66.2
Msa0391020 AT5G65070.2 40.964 83 45 2 9 90 2 81 1.08e-12 65.9
Msa0391020 AT5G65070.5 40.964 83 45 2 9 90 2 81 1.38e-12 65.1
Msa0391020 AT5G65070.3 49.123 57 29 0 9 65 2 58 2.87e-12 64.7
Msa0391020 AT4G37435.1 43.056 72 40 1 9 79 2 73 1.31e-11 62.0
Msa0391020 AT5G65080.2 43.548 62 35 0 1 62 1 62 2.81e-11 61.2
Msa0391020 AT1G18750.4 37.662 77 46 1 9 83 2 78 3.74e-11 62.4
Msa0391020 AT1G18750.1 37.662 77 46 1 9 83 2 78 4.11e-11 62.4
Msa0391020 AT2G26320.1 43.243 74 40 1 5 76 14 87 4.18e-11 58.9
Msa0391020 AT1G18750.3 37.662 77 46 1 9 83 2 78 4.25e-11 62.4

Find 56 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCATGATGTCATCATTT+TGG 0.109779 3_2:+2325934 None:intergenic
GACCTTATTCATCTCATAAA+TGG 0.175011 3_2:+2325764 None:intergenic
GAACCATTTCCAACATAAAA+TGG 0.249437 3_2:+2325642 None:intergenic
TTTGTTTGGTTTCAACAATA+TGG 0.259787 3_2:-2325526 Msa0391020:CDS
TCTATGATCGTTTCAACATT+TGG 0.289536 3_2:+2325981 None:intergenic
CAACATAAAATGGAAGGGTT+TGG 0.295108 3_2:+2325652 None:intergenic
GTTGAATCTTGTTGAGGATT+TGG 0.322565 3_2:+2325591 None:intergenic
TTGTTGCTCAACATGCTGAT+AGG 0.333786 3_2:-2325698 Msa0391020:CDS
AACAAATGTGGTTGCAAGAT+AGG 0.334778 3_2:+2325543 None:intergenic
CCTGATTTGTCTTTCGCACC+TGG 0.338707 3_2:+2325808 None:intergenic
ATTATACAAGAAGGCTTTAG+AGG 0.340263 3_2:-2325733 Msa0391020:CDS
AACATAAAATGGAAGGGTTT+GGG 0.353082 3_2:+2325653 None:intergenic
TTGTTTGGTTTCAACAATAT+GGG 0.380840 3_2:-2325525 Msa0391020:CDS
AGCGAGCTTTGCACCCTTTG+TGG 0.386397 3_2:-2326062 Msa0391020:CDS
ATCTTGCAACCACATTTGTT+TGG 0.393291 3_2:-2325540 Msa0391020:CDS
GTTGGAAATGGTTCATCCTC+TGG 0.402464 3_2:-2325633 Msa0391020:CDS
TGCTGATAGGGTTGAAATGC+AGG 0.408645 3_2:-2325685 Msa0391020:CDS
ACCTTATTCATCTCATAAAT+GGG 0.419947 3_2:+2325765 None:intergenic
TCCCATTTATGAGATGAATA+AGG 0.420859 3_2:-2325766 Msa0391020:CDS
CGCAATATATGCACCACAAA+GGG 0.465418 3_2:+2326049 None:intergenic
CCTTCTTGTATAATTCAAGT+TGG 0.484620 3_2:+2325742 None:intergenic
TGACATCATGCAATTAATTG+AGG 0.500210 3_2:-2325925 Msa0391020:CDS
CCAGGTGCGAAAGACAAATC+AGG 0.504787 3_2:-2325808 Msa0391020:CDS
GCTCGCGCACCTTGGCTCTA+CGG 0.510044 3_2:+2325898 None:intergenic
ACAAATGTGGTTGCAAGATA+GGG 0.513656 3_2:+2325544 None:intergenic
GTGGTTGCAAGATAGGGTTA+TGG 0.523741 3_2:+2325550 None:intergenic
TTCAACAATATGGGAGAAGA+AGG 0.528297 3_2:-2325516 Msa0391020:CDS
GCCAAGGTGCGCGAGCTCAA+TGG 0.535008 3_2:-2325891 Msa0391020:CDS
ACCATTGAGCTCGCGCACCT+TGG 0.535093 3_2:+2325890 None:intergenic
CCAACTTGAATTATACAAGA+AGG 0.537115 3_2:-2325742 Msa0391020:CDS
CATTTCCAACATAAAATGGA+AGG 0.542188 3_2:+2325646 None:intergenic
GAGCTCAATGGTATATTGAC+TGG 0.544330 3_2:-2325879 Msa0391020:CDS
TGTTGCTCAACATGCTGATA+GGG 0.545180 3_2:-2325697 Msa0391020:CDS
GAAGGTGGACATGGTCCACA+TGG 0.547260 3_2:-2325498 Msa0391020:CDS
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 3_2:-2326100 Msa0391020:CDS
CCGTGAGAATGAGCTAATCC+AGG 0.557926 3_2:-2325826 Msa0391020:CDS
ATTTCCAACATAAAATGGAA+GGG 0.561384 3_2:+2325647 None:intergenic
GGATTTGGCTGATGCTCAAG+AGG 0.571835 3_2:+2325606 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 3_2:-2326101 Msa0391020:CDS
ACTGGTATGAAAGATGCAAT+CGG 0.573096 3_2:-2325861 Msa0391020:CDS
GCGTTAATCATATTCTCACC+TGG 0.578489 3_2:-2326029 Msa0391020:CDS
AACAATATGGGAGAAGAAGG+TGG 0.594567 3_2:-2325513 Msa0391020:CDS
ATGGGAGAAGAAGGTGGACA+TGG 0.604335 3_2:-2325507 Msa0391020:CDS
TGTGCTTTAGCCATGTCAAG+CGG 0.619256 3_2:-2326191 None:intergenic
GGAAAGGTTGAATCTTGTTG+AGG 0.620573 3_2:+2325585 None:intergenic
TCAAGCGGAAAGAAAACTCA+AGG 0.621333 3_2:-2326176 Msa0391020:CDS
CCTGGATTAGCTCATTCTCA+CGG 0.627343 3_2:+2325826 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.627906 3_2:+2326087 None:intergenic
ACGCAATATATGCACCACAA+AGG 0.628806 3_2:+2326048 None:intergenic
AATGAAAATACTTTCTCACC+AGG 0.642771 3_2:+2326011 None:intergenic
TGAGGATTACCGTAGAGCCA+AGG 0.649629 3_2:-2325907 Msa0391020:CDS
GCTGATAGGGTTGAAATGCA+GGG 0.657468 3_2:-2325684 Msa0391020:CDS
ATGCTCAAGAGGCATTCCAG+AGG 0.678253 3_2:+2325617 None:intergenic
TTGTTGAAACCAAACAAATG+TGG 0.689946 3_2:+2325531 None:intergenic
AAGGTGGACATGGTCCACAT+GGG 0.699064 3_2:-2325497 Msa0391020:CDS
TCATATCAAAAGAACCCATG+TGG 0.739919 3_2:+2325483 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ACCTTATTCATCTCATAAAT+GGG + chr3_2:2325905-2325924 None:intergenic 25.0%
! ATTTCCAACATAAAATGGAA+GGG + chr3_2:2326023-2326042 None:intergenic 25.0%
!! TTTGTTTGGTTTCAACAATA+TGG - chr3_2:2326141-2326160 Msa0391020:CDS 25.0%
!! TTGTTTGGTTTCAACAATAT+GGG - chr3_2:2326142-2326161 Msa0391020:CDS 25.0%
AATGAAAATACTTTCTCACC+AGG + chr3_2:2325659-2325678 None:intergenic 30.0%
!!! GGTGAGAAAGTATTTTCATT+TGG - chr3_2:2325659-2325678 Msa0391020:CDS 30.0%
TCTATGATCGTTTCAACATT+TGG + chr3_2:2325689-2325708 None:intergenic 30.0%
! TTGCATGATGTCATCATTTT+GGG + chr3_2:2325735-2325754 None:intergenic 30.0%
! ATTGCATGATGTCATCATTT+TGG + chr3_2:2325736-2325755 None:intergenic 30.0%
TGACATCATGCAATTAATTG+AGG - chr3_2:2325742-2325761 Msa0391020:CDS 30.0%
! AGACAAATCAGGAACATTTT+TGG - chr3_2:2325870-2325889 Msa0391020:CDS 30.0%
TCCCATTTATGAGATGAATA+AGG - chr3_2:2325901-2325920 Msa0391020:CDS 30.0%
GACCTTATTCATCTCATAAA+TGG + chr3_2:2325906-2325925 None:intergenic 30.0%
CCTTCTTGTATAATTCAAGT+TGG + chr3_2:2325928-2325947 None:intergenic 30.0%
CCAACTTGAATTATACAAGA+AGG - chr3_2:2325925-2325944 Msa0391020:CDS 30.0%
! ATTATACAAGAAGGCTTTAG+AGG - chr3_2:2325934-2325953 Msa0391020:CDS 30.0%
AACATAAAATGGAAGGGTTT+GGG + chr3_2:2326017-2326036 None:intergenic 30.0%
CATTTCCAACATAAAATGGA+AGG + chr3_2:2326024-2326043 None:intergenic 30.0%
! CTTCCATTTTATGTTGGAAA+TGG - chr3_2:2326022-2326041 Msa0391020:CDS 30.0%
GAACCATTTCCAACATAAAA+TGG + chr3_2:2326028-2326047 None:intergenic 30.0%
TTGTTGAAACCAAACAAATG+TGG + chr3_2:2326139-2326158 None:intergenic 30.0%
ACTGGTATGAAAGATGCAAT+CGG - chr3_2:2325806-2325825 Msa0391020:CDS 35.0%
!! CAAATCAGGAACATTTTTGG+TGG - chr3_2:2325873-2325892 Msa0391020:CDS 35.0%
CAACATAAAATGGAAGGGTT+TGG + chr3_2:2326018-2326037 None:intergenic 35.0%
! CAAACCCTTCCATTTTATGT+TGG - chr3_2:2326016-2326035 Msa0391020:CDS 35.0%
GTTGAATCTTGTTGAGGATT+TGG + chr3_2:2326079-2326098 None:intergenic 35.0%
ACAAATGTGGTTGCAAGATA+GGG + chr3_2:2326126-2326145 None:intergenic 35.0%
AACAAATGTGGTTGCAAGAT+AGG + chr3_2:2326127-2326146 None:intergenic 35.0%
ATCTTGCAACCACATTTGTT+TGG - chr3_2:2326127-2326146 Msa0391020:CDS 35.0%
TTCAACAATATGGGAGAAGA+AGG - chr3_2:2326151-2326170 Msa0391020:CDS 35.0%
TCAAGCGGAAAGAAAACTCA+AGG - chr3_2:2325491-2325510 Msa0391020:CDS 40.0%
CGCAATATATGCACCACAAA+GGG + chr3_2:2325621-2325640 None:intergenic 40.0%
ACGCAATATATGCACCACAA+AGG + chr3_2:2325622-2325641 None:intergenic 40.0%
GCGTTAATCATATTCTCACC+TGG - chr3_2:2325638-2325657 Msa0391020:CDS 40.0%
! ATGATGTCATCATTTTGGGC+TGG + chr3_2:2325731-2325750 None:intergenic 40.0%
GAGCTCAATGGTATATTGAC+TGG - chr3_2:2325788-2325807 Msa0391020:CDS 40.0%
TTGTTGCTCAACATGCTGAT+AGG - chr3_2:2325969-2325988 Msa0391020:CDS 40.0%
TGTTGCTCAACATGCTGATA+GGG - chr3_2:2325970-2325989 Msa0391020:CDS 40.0%
GGAAAGGTTGAATCTTGTTG+AGG + chr3_2:2326085-2326104 None:intergenic 40.0%
ATGGAAAAACTCTGCTGGAA+AGG + chr3_2:2326101-2326120 None:intergenic 40.0%
AACAATATGGGAGAAGAAGG+TGG - chr3_2:2326154-2326173 Msa0391020:CDS 40.0%
CTTTCTTGAAGAGCCCACTA+CGG + chr3_2:2325583-2325602 None:intergenic 45.0%
!! CCTGGATTAGCTCATTCTCA+CGG + chr3_2:2325844-2325863 None:intergenic 45.0%
TGCTGATAGGGTTGAAATGC+AGG - chr3_2:2325982-2326001 Msa0391020:CDS 45.0%
GCTGATAGGGTTGAAATGCA+GGG - chr3_2:2325983-2326002 Msa0391020:CDS 45.0%
GTTGGAAATGGTTCATCCTC+TGG - chr3_2:2326034-2326053 Msa0391020:CDS 45.0%
GGGTTATGGAAAAACTCTGC+TGG + chr3_2:2326106-2326125 None:intergenic 45.0%
GTGGTTGCAAGATAGGGTTA+TGG + chr3_2:2326120-2326139 None:intergenic 45.0%
TGAGGATTACCGTAGAGCCA+AGG - chr3_2:2325760-2325779 Msa0391020:CDS 50.0%
CCGTGAGAATGAGCTAATCC+AGG - chr3_2:2325841-2325860 Msa0391020:CDS 50.0%
! CCTGATTTGTCTTTCGCACC+TGG + chr3_2:2325862-2325881 None:intergenic 50.0%
CCAGGTGCGAAAGACAAATC+AGG - chr3_2:2325859-2325878 Msa0391020:CDS 50.0%
!! ATGCTCAAGAGGCATTCCAG+AGG + chr3_2:2326053-2326072 None:intergenic 50.0%
GGATTTGGCTGATGCTCAAG+AGG + chr3_2:2326064-2326083 None:intergenic 50.0%
ATGGGAGAAGAAGGTGGACA+TGG - chr3_2:2326160-2326179 Msa0391020:CDS 50.0%
AAGGTGGACATGGTCCACAT+GGG - chr3_2:2326170-2326189 Msa0391020:CDS 50.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG - chr3_2:2325566-2325585 Msa0391020:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG - chr3_2:2325567-2325586 Msa0391020:CDS 55.0%
AGCGAGCTTTGCACCCTTTG+TGG - chr3_2:2325605-2325624 Msa0391020:CDS 55.0%
GAAGGTGGACATGGTCCACA+TGG - chr3_2:2326169-2326188 Msa0391020:CDS 55.0%
ACCATTGAGCTCGCGCACCT+TGG + chr3_2:2325780-2325799 None:intergenic 60.0%
!! GCTCGCGCACCTTGGCTCTA+CGG + chr3_2:2325772-2325791 None:intergenic 65.0%
GCCAAGGTGCGCGAGCTCAA+TGG - chr3_2:2325776-2325795 Msa0391020:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 2325488 2326201 2325488 ID=Msa0391020;Name=Msa0391020
chr3_2 mRNA 2325488 2326201 2325488 ID=Msa0391020-mRNA-1;Parent=Msa0391020;Name=Msa0391020-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|237
chr3_2 exon 2325488 2326201 2325488 ID=Msa0391020-mRNA-1:exon:752;Parent=Msa0391020-mRNA-1
chr3_2 CDS 2325488 2326201 2325488 ID=Msa0391020-mRNA-1:cds;Parent=Msa0391020-mRNA-1
Gene Sequence

>Msa0391020

ATGTCAAGCGGAAAGAAAACTCAAGGTCGTAAAAAGATTGAGATGAAAAAGATGAGCAATGAAAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCTAGCGAGCTTTGCACCCTTTGTGGTGCATATATTGCGTTAATCATATTCTCACCTGGTGAGAAAGTATTTTCATTTGGTTATCCAAATGTTGAAACGATCATAGATCGTTTTCTCTCTCAAGTTCCAGCCCAAAATGATGACATCATGCAATTAATTGAGGATTACCGTAGAGCCAAGGTGCGCGAGCTCAATGGTATATTGACTGGTATGAAAGATGCAATCGGCATCAATAAGAACCGTGAGAATGAGCTAATCCAGGTGCGAAAGACAAATCAGGAACATTTTTGGTGGACTCGTCCCATTTATGAGATGAATAAGGTCCAACTTGAATTATACAAGAAGGCTTTAGAGGATCTACTTAAACTTGTTGCTCAACATGCTGATAGGGTTGAAATGCAGGGTACTTCTACCCAAACCCTTCCATTTTATGTTGGAAATGGTTCATCCTCTGGAATGCCTCTTGAGCATCAGCCAAATCCTCAACAAGATTCAACCTTTCCAGCAGAGTTTTTCCATAACCCTATCTTGCAACCACATTTGTTTGGTTTCAACAATATGGGAGAAGAAGGTGGACATGGTCCACATGGGTTCTTTTGA
Protein sequence

>Msa0391020

MSSGKKTQGRKKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAYIALIIFSPGEKVFSFGYPNVETIIDRFLSQVPAQNDDIMQLIEDYRRAKVRELNGILTGMKDAIGINKNRENELIQVRKTNQEHFWWTRPIYEMNKVQLELYKKALEDLLKLVAQHADRVEMQGTSTQTLPFYVGNGSSSGMPLEHQPNPQQDSTFPAEFFHNPILQPHLFGFNNMGEEGGHGPHGFF*